Query 028388
Match_columns 209
No_of_seqs 110 out of 1391
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079 Uridylate kinase/adeny 100.0 4.9E-35 1.1E-39 201.0 22.7 185 17-202 4-193 (195)
2 PLN02674 adenylate kinase 100.0 2.5E-33 5.5E-38 206.4 24.2 183 18-200 28-243 (244)
3 PLN02459 probable adenylate ki 100.0 4.7E-33 1E-37 205.7 23.9 194 7-202 15-251 (261)
4 PRK14531 adenylate kinase; Pro 100.0 1.5E-32 3.3E-37 197.2 23.5 177 22-200 3-182 (183)
5 PLN02200 adenylate kinase fami 100.0 1.6E-32 3.4E-37 203.1 23.7 190 14-203 36-225 (234)
6 PRK14527 adenylate kinase; Pro 100.0 5.2E-32 1.1E-36 195.8 23.7 184 17-200 2-190 (191)
7 PRK13808 adenylate kinase; Pro 100.0 6.2E-32 1.3E-36 206.3 22.4 181 23-203 2-194 (333)
8 PRK14528 adenylate kinase; Pro 100.0 2E-31 4.3E-36 191.5 23.6 178 22-199 2-185 (186)
9 PRK14532 adenylate kinase; Pro 100.0 1.8E-31 3.9E-36 192.7 23.5 179 23-201 2-186 (188)
10 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 2E-31 4.4E-36 191.8 23.2 178 23-200 1-182 (183)
11 PRK14529 adenylate kinase; Pro 100.0 3.7E-31 8.1E-36 192.9 21.6 178 23-200 2-222 (223)
12 TIGR01351 adk adenylate kinase 100.0 8.4E-31 1.8E-35 192.1 23.0 176 24-200 2-209 (210)
13 PRK14526 adenylate kinase; Pro 100.0 2.8E-30 6.1E-35 188.0 22.4 179 23-203 2-210 (211)
14 PRK02496 adk adenylate kinase; 100.0 8.1E-30 1.8E-34 183.5 24.3 178 22-201 2-183 (184)
15 PRK00279 adk adenylate kinase; 100.0 4E-30 8.7E-35 189.2 22.8 181 22-202 1-214 (215)
16 PTZ00088 adenylate kinase 1; P 100.0 2.2E-29 4.7E-34 185.2 23.9 180 18-199 3-228 (229)
17 TIGR01360 aden_kin_iso1 adenyl 100.0 1.5E-28 3.3E-33 177.6 24.6 181 20-201 2-186 (188)
18 PRK14530 adenylate kinase; Pro 100.0 4.4E-28 9.6E-33 178.4 22.4 176 23-203 5-214 (215)
19 cd01428 ADK Adenylate kinase ( 100.0 9.4E-28 2E-32 174.3 20.1 167 24-191 2-193 (194)
20 COG0563 Adk Adenylate kinase a 100.0 9.1E-27 2E-31 165.0 20.7 172 22-200 1-177 (178)
21 PF00406 ADK: Adenylate kinase 100.0 4.3E-27 9.3E-32 164.0 18.6 146 26-178 1-150 (151)
22 PLN02842 nucleotide kinase 100.0 9.5E-27 2.1E-31 186.0 20.4 179 25-206 1-206 (505)
23 KOG3078 Adenylate kinase [Nucl 99.9 4.4E-23 9.6E-28 149.0 18.1 183 20-204 14-226 (235)
24 PRK01184 hypothetical protein; 99.9 1.9E-19 4.1E-24 129.6 20.8 170 22-203 2-179 (184)
25 PRK13973 thymidylate kinase; P 99.8 2.9E-19 6.3E-24 131.2 18.3 178 20-207 2-211 (213)
26 COG0125 Tmk Thymidylate kinase 99.8 4.6E-18 9.9E-23 122.9 18.4 175 20-205 2-206 (208)
27 COG1102 Cmk Cytidylate kinase 99.8 1.4E-17 2.9E-22 112.9 18.5 166 22-202 1-172 (179)
28 PRK13975 thymidylate kinase; P 99.8 5.4E-18 1.2E-22 123.2 18.1 169 21-204 2-192 (196)
29 PRK06762 hypothetical protein; 99.8 9.4E-18 2E-22 118.8 18.3 157 21-201 2-163 (166)
30 PRK04040 adenylate kinase; Pro 99.8 2.4E-18 5.2E-23 123.5 14.9 172 21-200 2-187 (188)
31 PLN02924 thymidylate kinase 99.8 6.6E-18 1.4E-22 123.9 17.5 170 19-204 14-205 (220)
32 PRK03839 putative kinase; Prov 99.8 2.7E-18 5.9E-23 123.1 15.1 151 22-203 1-154 (180)
33 PRK13974 thymidylate kinase; P 99.8 4.3E-18 9.3E-23 124.9 16.1 174 21-203 3-207 (212)
34 PRK06217 hypothetical protein; 99.8 1.5E-17 3.2E-22 119.5 16.3 162 22-203 2-180 (183)
35 PRK13949 shikimate kinase; Pro 99.8 3.9E-17 8.4E-22 115.5 17.9 160 23-199 3-168 (169)
36 PRK08356 hypothetical protein; 99.8 7.3E-18 1.6E-22 122.3 14.5 170 20-202 4-192 (195)
37 COG0703 AroK Shikimate kinase 99.8 1.6E-17 3.6E-22 115.2 15.2 163 21-202 2-168 (172)
38 PRK13948 shikimate kinase; Pro 99.8 3E-17 6.6E-22 116.8 16.0 166 18-202 7-175 (182)
39 PRK08233 hypothetical protein; 99.8 9.9E-18 2.1E-22 120.4 13.7 169 20-202 2-177 (182)
40 PHA02530 pseT polynucleotide k 99.8 5.5E-18 1.2E-22 131.0 11.9 164 21-191 2-171 (300)
41 COG1936 Predicted nucleotide k 99.8 3.1E-17 6.7E-22 112.6 13.7 153 22-202 1-156 (180)
42 PRK00698 tmk thymidylate kinas 99.8 2E-16 4.4E-21 115.7 18.0 171 20-203 2-203 (205)
43 cd01672 TMPK Thymidine monopho 99.8 4.1E-16 9E-21 113.5 19.3 167 22-201 1-199 (200)
44 TIGR00041 DTMP_kinase thymidyl 99.8 2.2E-16 4.8E-21 114.6 17.3 162 21-196 3-195 (195)
45 PRK00131 aroK shikimate kinase 99.7 1.6E-16 3.5E-21 113.3 15.7 169 18-202 1-171 (175)
46 cd02030 NDUO42 NADH:Ubiquinone 99.7 2.6E-16 5.6E-21 116.1 16.8 172 23-198 1-217 (219)
47 PRK04182 cytidylate kinase; Pr 99.7 5.6E-16 1.2E-20 111.1 17.8 167 22-204 1-175 (180)
48 PRK03731 aroL shikimate kinase 99.7 5E-16 1.1E-20 110.5 17.3 164 22-202 3-170 (171)
49 PRK13946 shikimate kinase; Pro 99.7 5.9E-16 1.3E-20 111.2 17.6 165 20-204 9-178 (184)
50 PRK08118 topology modulation p 99.7 1E-16 2.2E-21 113.2 13.4 141 22-187 2-158 (167)
51 PRK00081 coaE dephospho-CoA ki 99.7 2.2E-16 4.7E-21 114.3 15.4 163 22-202 3-193 (194)
52 PRK14730 coaE dephospho-CoA ki 99.7 3E-16 6.4E-21 113.5 16.0 162 22-200 2-192 (195)
53 PRK07933 thymidylate kinase; V 99.7 1.3E-16 2.8E-21 117.0 13.7 171 22-200 1-211 (213)
54 PRK05057 aroK shikimate kinase 99.7 5.4E-16 1.2E-20 110.1 16.1 167 19-202 2-171 (172)
55 PRK13947 shikimate kinase; Pro 99.7 5.1E-16 1.1E-20 110.4 15.7 163 23-202 3-168 (171)
56 PRK12339 2-phosphoglycerate ki 99.7 3E-15 6.5E-20 108.0 18.5 173 20-200 2-195 (197)
57 PRK13976 thymidylate kinase; P 99.7 3.3E-15 7.1E-20 109.0 18.4 168 22-204 1-203 (209)
58 TIGR02173 cyt_kin_arch cytidyl 99.7 5.3E-15 1.2E-19 105.1 19.0 161 22-200 1-170 (171)
59 TIGR01313 therm_gnt_kin carboh 99.7 3E-15 6.5E-20 105.6 17.2 154 24-200 1-161 (163)
60 PF02223 Thymidylate_kin: Thym 99.7 3.5E-16 7.5E-21 112.8 12.2 156 26-196 1-186 (186)
61 PRK14733 coaE dephospho-CoA ki 99.7 5E-15 1.1E-19 107.1 17.5 169 19-203 4-199 (204)
62 COG1428 Deoxynucleoside kinase 99.7 9.2E-16 2E-20 108.9 12.9 123 20-151 3-152 (216)
63 PRK00625 shikimate kinase; Pro 99.7 2.7E-15 5.9E-20 106.1 15.1 112 22-144 1-116 (173)
64 PF13671 AAA_33: AAA domain; P 99.7 5E-16 1.1E-20 107.2 11.1 113 23-144 1-118 (143)
65 COG0237 CoaE Dephospho-CoA kin 99.7 4.4E-15 9.5E-20 107.0 16.2 166 21-205 2-195 (201)
66 PRK14731 coaE dephospho-CoA ki 99.7 1.9E-15 4.2E-20 110.5 14.6 168 19-204 3-204 (208)
67 COG2019 AdkA Archaeal adenylat 99.7 3.5E-15 7.6E-20 101.7 14.6 171 20-202 3-188 (189)
68 PRK14734 coaE dephospho-CoA ki 99.7 2.8E-15 6.1E-20 108.8 15.2 165 22-204 2-196 (200)
69 COG0283 Cmk Cytidylate kinase 99.7 7.3E-15 1.6E-19 104.6 16.0 172 21-202 4-219 (222)
70 PRK12338 hypothetical protein; 99.7 6.8E-15 1.5E-19 112.4 16.4 180 18-204 1-206 (319)
71 PLN02422 dephospho-CoA kinase 99.7 6.6E-15 1.4E-19 108.2 15.6 164 22-203 2-195 (232)
72 PRK14732 coaE dephospho-CoA ki 99.6 4.8E-15 1E-19 107.1 12.9 164 23-204 1-192 (196)
73 PLN02199 shikimate kinase 99.6 5.4E-14 1.2E-18 105.8 18.7 168 20-204 101-290 (303)
74 cd00227 CPT Chloramphenicol (C 99.6 5.6E-14 1.2E-18 100.3 18.1 163 21-201 2-175 (175)
75 PRK08154 anaerobic benzoate ca 99.6 8.3E-15 1.8E-19 113.3 14.5 167 17-203 129-302 (309)
76 cd01673 dNK Deoxyribonucleosid 99.6 6.5E-15 1.4E-19 106.8 13.1 115 23-144 1-145 (193)
77 PTZ00451 dephospho-CoA kinase; 99.6 1.7E-14 3.7E-19 107.0 15.4 163 22-202 2-207 (244)
78 TIGR00152 dephospho-CoA kinase 99.6 1.7E-14 3.6E-19 104.2 14.9 158 23-197 1-187 (188)
79 TIGR03574 selen_PSTK L-seryl-t 99.6 4.7E-14 1E-18 106.2 17.4 160 23-202 1-169 (249)
80 PRK14021 bifunctional shikimat 99.6 2.1E-14 4.5E-19 118.7 16.6 170 19-202 4-176 (542)
81 PRK05480 uridine/cytidine kina 99.6 1.2E-14 2.5E-19 106.7 12.7 176 18-202 3-208 (209)
82 PRK13477 bifunctional pantoate 99.6 1.7E-14 3.7E-19 117.0 14.7 176 18-202 281-503 (512)
83 KOG3327 Thymidylate kinase/ade 99.6 3.1E-14 6.8E-19 98.5 13.5 175 18-205 2-198 (208)
84 KOG3347 Predicted nucleotide k 99.6 2.6E-14 5.7E-19 95.6 12.6 107 21-144 7-113 (176)
85 PRK10078 ribose 1,5-bisphospho 99.6 4.7E-14 1E-18 101.6 15.2 160 22-203 3-177 (186)
86 KOG3354 Gluconate kinase [Carb 99.6 3.1E-14 6.8E-19 95.8 12.7 163 19-202 10-188 (191)
87 COG3265 GntK Gluconate kinase 99.6 6.7E-15 1.5E-19 98.4 9.4 155 27-203 1-160 (161)
88 cd02021 GntK Gluconate kinase 99.6 3E-14 6.5E-19 99.2 12.9 112 23-144 1-118 (150)
89 KOG3877 NADH:ubiquinone oxidor 99.6 1.7E-13 3.7E-18 100.7 17.1 175 20-198 70-293 (393)
90 PRK14737 gmk guanylate kinase; 99.6 5.5E-14 1.2E-18 100.8 14.2 167 19-202 2-184 (186)
91 cd02022 DPCK Dephospho-coenzym 99.6 3.9E-14 8.5E-19 101.3 12.9 128 23-162 1-156 (179)
92 PRK07261 topology modulation p 99.6 8.1E-15 1.8E-19 104.0 9.1 99 22-144 1-99 (171)
93 cd00464 SK Shikimate kinase (S 99.6 1.3E-13 2.8E-18 96.3 14.9 108 24-144 2-112 (154)
94 PRK09825 idnK D-gluconate kina 99.6 5.2E-14 1.1E-18 100.2 12.6 166 21-207 3-173 (176)
95 TIGR02322 phosphon_PhnN phosph 99.6 1.7E-13 3.6E-18 98.2 14.5 162 22-202 2-178 (179)
96 PF01121 CoaE: Dephospho-CoA k 99.6 2.3E-14 4.9E-19 102.0 9.8 152 22-191 1-180 (180)
97 PRK03333 coaE dephospho-CoA ki 99.6 8.6E-14 1.9E-18 110.8 14.1 166 22-204 2-194 (395)
98 COG4088 Predicted nucleotide k 99.6 9.8E-14 2.1E-18 98.0 12.4 113 22-144 2-122 (261)
99 TIGR00017 cmk cytidylate kinas 99.6 2.7E-13 5.9E-18 99.5 15.4 170 21-199 2-216 (217)
100 PF01202 SKI: Shikimate kinase 99.6 1.1E-13 2.3E-18 97.1 12.8 152 30-201 1-158 (158)
101 cd02020 CMPK Cytidine monophos 99.6 7.8E-14 1.7E-18 96.6 11.9 122 23-163 1-123 (147)
102 PRK05541 adenylylsulfate kinas 99.6 2.5E-13 5.5E-18 97.0 14.5 162 18-202 4-172 (176)
103 PRK06547 hypothetical protein; 99.6 1.8E-14 3.9E-19 102.0 7.8 127 15-144 9-138 (172)
104 COG0194 Gmk Guanylate kinase [ 99.6 3E-13 6.5E-18 94.5 13.6 164 20-202 3-182 (191)
105 PRK00023 cmk cytidylate kinase 99.6 5.9E-13 1.3E-17 98.4 16.1 173 20-202 3-221 (225)
106 COG0529 CysC Adenylylsulfate k 99.5 3.1E-13 6.7E-18 93.2 13.3 168 15-202 17-191 (197)
107 KOG3220 Similar to bacterial d 99.5 9.1E-13 2E-17 92.6 15.2 161 22-200 2-192 (225)
108 PRK14738 gmk guanylate kinase; 99.5 3.1E-13 6.7E-18 98.8 13.1 169 17-203 9-195 (206)
109 PRK11545 gntK gluconate kinase 99.5 1E-12 2.2E-17 92.6 14.2 153 27-202 1-160 (163)
110 PRK04220 2-phosphoglycerate ki 99.5 3.5E-12 7.5E-17 96.8 17.7 177 19-204 90-292 (301)
111 PTZ00301 uridine kinase; Provi 99.5 1.2E-13 2.7E-18 100.6 9.6 167 21-202 3-205 (210)
112 COG0572 Udk Uridine kinase [Nu 99.5 1.7E-13 3.7E-18 98.7 9.7 146 19-176 6-177 (218)
113 PF13207 AAA_17: AAA domain; P 99.5 3.4E-14 7.3E-19 95.3 5.5 106 23-144 1-110 (121)
114 smart00072 GuKc Guanylate kina 99.5 1.7E-13 3.6E-18 98.6 8.8 163 21-202 2-182 (184)
115 TIGR00235 udk uridine kinase. 99.5 3.4E-13 7.3E-18 98.8 10.5 173 16-201 1-203 (207)
116 PRK13951 bifunctional shikimat 99.5 1.5E-12 3.2E-17 106.2 15.1 152 22-196 1-155 (488)
117 PRK11860 bifunctional 3-phosph 99.5 1.7E-12 3.6E-17 110.0 15.9 172 21-202 442-655 (661)
118 TIGR01663 PNK-3'Pase polynucle 99.5 1.7E-12 3.6E-17 106.0 15.2 102 17-144 365-468 (526)
119 TIGR03263 guanyl_kin guanylate 99.5 1.2E-12 2.6E-17 93.8 12.8 163 22-201 2-179 (180)
120 PRK00300 gmk guanylate kinase; 99.5 4E-12 8.6E-17 93.0 14.9 169 18-203 2-185 (205)
121 PRK05416 glmZ(sRNA)-inactivati 99.5 1.6E-11 3.5E-16 93.5 18.1 149 21-202 6-160 (288)
122 COG2074 2-phosphoglycerate kin 99.5 6E-12 1.3E-16 91.6 14.7 179 17-204 85-289 (299)
123 TIGR00455 apsK adenylylsulfate 99.5 3E-12 6.6E-17 92.1 13.3 159 19-200 16-184 (184)
124 PF07931 CPT: Chloramphenicol 99.5 5.8E-12 1.3E-16 88.8 14.3 156 22-201 2-174 (174)
125 PF08433 KTI12: Chromatin asso 99.4 2.7E-12 5.8E-17 97.0 13.1 111 22-144 2-119 (270)
126 PRK09518 bifunctional cytidyla 99.4 3.5E-13 7.5E-18 115.1 9.2 171 23-206 3-235 (712)
127 PRK12337 2-phosphoglycerate ki 99.4 3E-11 6.5E-16 96.3 19.4 178 19-202 253-461 (475)
128 PRK00889 adenylylsulfate kinas 99.4 6.8E-12 1.5E-16 89.5 13.9 160 19-202 2-170 (175)
129 PRK06696 uridine kinase; Valid 99.4 1E-12 2.2E-17 97.3 9.3 120 18-144 19-167 (223)
130 PF01583 APS_kinase: Adenylyls 99.4 2.4E-12 5.1E-17 88.8 10.3 113 20-143 1-119 (156)
131 PRK03846 adenylylsulfate kinas 99.4 7.3E-12 1.6E-16 91.1 13.3 158 18-202 21-192 (198)
132 PRK12269 bifunctional cytidyla 99.4 7E-12 1.5E-16 107.6 13.7 39 22-60 35-73 (863)
133 PF13238 AAA_18: AAA domain; P 99.4 2.7E-13 5.9E-18 91.7 3.9 106 24-144 1-112 (129)
134 cd02024 NRK1 Nicotinamide ribo 99.4 1.1E-12 2.3E-17 93.8 7.0 114 23-144 1-151 (187)
135 cd02023 UMPK Uridine monophosp 99.4 5.3E-12 1.1E-16 91.9 10.7 114 23-144 1-139 (198)
136 PRK07667 uridine kinase; Provi 99.4 2.3E-12 4.9E-17 93.3 8.2 130 20-160 16-171 (193)
137 COG0645 Predicted kinase [Gene 99.4 1.2E-10 2.5E-15 80.4 15.8 116 22-144 2-124 (170)
138 PRK05537 bifunctional sulfate 99.4 1.1E-11 2.4E-16 102.8 12.5 164 18-202 389-562 (568)
139 COG4639 Predicted kinase [Gene 99.4 2.3E-11 4.9E-16 82.4 11.7 114 21-144 2-117 (168)
140 PF00485 PRK: Phosphoribulokin 99.3 1.6E-12 3.4E-17 94.3 4.8 115 23-144 1-147 (194)
141 PF06414 Zeta_toxin: Zeta toxi 99.3 3.6E-12 7.9E-17 92.7 6.6 118 17-144 11-141 (199)
142 cd02027 APSK Adenosine 5'-phos 99.3 7E-11 1.5E-15 82.0 12.6 109 23-143 1-116 (149)
143 PF03668 ATP_bind_2: P-loop AT 99.3 3E-10 6.5E-15 85.2 16.5 149 22-202 2-156 (284)
144 PHA03132 thymidine kinase; Pro 99.3 9.9E-11 2.1E-15 96.0 14.3 129 21-151 257-427 (580)
145 PRK05506 bifunctional sulfate 99.3 5.3E-11 1.1E-15 100.7 12.9 163 18-201 457-627 (632)
146 cd02025 PanK Pantothenate kina 99.3 2.1E-11 4.5E-16 89.9 9.2 118 23-144 1-149 (220)
147 PLN02348 phosphoribulokinase 99.3 2.6E-11 5.7E-16 94.9 10.1 132 19-160 47-219 (395)
148 PF01591 6PF2K: 6-phosphofruct 99.3 1.3E-10 2.8E-15 85.0 12.2 150 17-171 8-179 (222)
149 PRK05439 pantothenate kinase; 99.3 1.7E-11 3.7E-16 93.9 7.6 124 17-144 82-237 (311)
150 cd02028 UMPK_like Uridine mono 99.2 1.5E-11 3.4E-16 87.8 6.3 110 23-144 1-139 (179)
151 KOG4235 Mitochondrial thymidin 99.2 5.8E-10 1.2E-14 78.2 13.4 67 120-189 150-220 (244)
152 COG3709 Uncharacterized compon 99.2 1.1E-09 2.5E-14 74.6 14.4 163 20-202 4-182 (192)
153 TIGR03575 selen_PSTK_euk L-ser 99.2 1.5E-10 3.2E-15 89.9 11.6 122 23-144 1-175 (340)
154 PRK09270 nucleoside triphospha 99.2 1E-10 2.3E-15 86.9 10.5 121 19-144 31-181 (229)
155 PRK15453 phosphoribulokinase; 99.2 1E-10 2.2E-15 87.8 9.0 40 18-57 2-46 (290)
156 PRK07429 phosphoribulokinase; 99.2 2.6E-10 5.7E-15 88.5 11.1 39 18-56 5-46 (327)
157 COG1660 Predicted P-loop-conta 99.2 1.8E-09 3.8E-14 79.2 14.3 147 22-202 2-157 (286)
158 KOG3308 Uncharacterized protei 99.2 4E-10 8.7E-15 79.5 10.6 173 20-202 3-204 (225)
159 PF00625 Guanylate_kin: Guanyl 99.2 1.7E-10 3.7E-15 82.9 8.3 165 20-202 1-182 (183)
160 TIGR00554 panK_bact pantothena 99.2 1.8E-10 3.9E-15 87.7 8.8 122 17-144 58-217 (290)
161 PLN02772 guanylate kinase 99.2 1.4E-09 2.9E-14 85.4 13.8 169 20-202 134-318 (398)
162 cd02019 NK Nucleoside/nucleoti 99.1 3.3E-10 7.1E-15 67.9 6.2 60 23-132 1-63 (69)
163 cd02026 PRK Phosphoribulokinas 99.0 3.2E-09 6.9E-14 80.7 10.3 34 23-56 1-37 (273)
164 cd02029 PRK_like Phosphoribulo 99.0 4.8E-09 1E-13 78.3 10.1 35 23-57 1-40 (277)
165 COG4185 Uncharacterized protei 99.0 2.4E-08 5.2E-13 68.1 12.4 151 21-186 2-157 (187)
166 PLN02318 phosphoribulokinase/u 99.0 2.9E-09 6.2E-14 87.4 9.4 37 19-55 63-100 (656)
167 PHA00729 NTP-binding motif con 99.0 7.2E-09 1.6E-13 75.8 9.4 113 18-144 14-139 (226)
168 KOG0635 Adenosine 5'-phosphosu 98.9 1.8E-08 3.9E-13 68.0 8.9 118 14-142 24-147 (207)
169 PHA03136 thymidine kinase; Pro 98.9 3.9E-07 8.5E-12 71.2 16.3 29 121-151 189-217 (378)
170 PLN02165 adenylate isopentenyl 98.9 2.1E-08 4.6E-13 77.4 9.2 37 19-55 41-77 (334)
171 COG1072 CoaA Panthothenate kin 98.8 9.4E-09 2E-13 76.4 6.6 122 16-144 77-231 (283)
172 KOG3062 RNA polymerase II elon 98.8 8.3E-09 1.8E-13 74.2 4.9 114 22-144 2-122 (281)
173 PF13521 AAA_28: AAA domain; P 98.8 2.7E-08 5.9E-13 70.1 7.5 37 23-62 1-37 (163)
174 PF13189 Cytidylate_kin2: Cyti 98.7 1.2E-06 2.6E-11 62.7 13.3 114 23-144 1-134 (179)
175 PRK06761 hypothetical protein; 98.7 4E-06 8.6E-11 63.8 16.4 30 21-50 3-32 (282)
176 PF08303 tRNA_lig_kinase: tRNA 98.6 1.5E-06 3.3E-11 60.0 12.0 73 24-118 2-75 (168)
177 PTZ00322 6-phosphofructo-2-kin 98.6 4.9E-07 1.1E-11 77.2 11.7 32 20-51 214-245 (664)
178 TIGR03707 PPK2_P_aer polyphosp 98.6 4.9E-06 1.1E-10 61.4 15.4 148 19-187 29-205 (230)
179 cd00071 GMPK Guanosine monopho 98.6 2.4E-07 5.3E-12 63.2 7.1 24 23-46 1-24 (137)
180 KOG0733 Nuclear AAA ATPase (VC 98.6 2.9E-07 6.3E-12 75.4 8.2 120 20-144 222-372 (802)
181 TIGR03709 PPK2_rel_1 polyphosp 98.6 9.9E-06 2.2E-10 60.9 15.5 146 20-186 55-229 (264)
182 PHA03135 thymidine kinase; Pro 98.5 1.1E-05 2.5E-10 62.3 15.7 27 19-45 8-34 (343)
183 TIGR03708 poly_P_AMP_trns poly 98.5 7.2E-06 1.6E-10 66.9 15.3 149 18-187 37-214 (493)
184 PHA03134 thymidine kinase; Pro 98.5 1.6E-05 3.4E-10 61.4 16.4 41 125-167 165-206 (340)
185 PHA03138 thymidine kinase; Pro 98.5 2.1E-06 4.6E-11 66.2 11.0 26 20-45 11-36 (340)
186 PRK00091 miaA tRNA delta(2)-is 98.5 1.2E-07 2.6E-12 73.2 4.1 35 20-54 3-37 (307)
187 KOG4622 Predicted nucleotide k 98.5 2.2E-06 4.7E-11 60.7 10.0 118 23-144 3-142 (291)
188 PLN02840 tRNA dimethylallyltra 98.5 1.6E-07 3.6E-12 74.7 4.8 39 16-54 16-54 (421)
189 PF00004 AAA: ATPase family as 98.5 1.2E-07 2.6E-12 64.1 3.4 28 24-51 1-28 (132)
190 PF13173 AAA_14: AAA domain 98.5 2E-06 4.4E-11 58.0 8.9 98 22-140 3-104 (128)
191 PF03976 PPK2: Polyphosphate k 98.4 1.9E-06 4.1E-11 63.6 8.9 143 20-186 30-204 (228)
192 PRK12724 flagellar biosynthesi 98.4 7.3E-06 1.6E-10 65.5 12.4 107 20-134 222-344 (432)
193 PRK08099 bifunctional DNA-bind 98.4 2.7E-06 5.9E-11 68.2 10.1 35 17-51 215-249 (399)
194 COG1618 Predicted nucleotide k 98.4 3.6E-07 7.8E-12 62.7 3.7 26 21-46 5-30 (179)
195 PF05729 NACHT: NACHT domain 98.3 3.1E-06 6.7E-11 59.4 7.9 24 22-45 1-24 (166)
196 COG3896 Chloramphenicol 3-O-ph 98.3 3.7E-05 8.1E-10 52.7 12.5 170 17-201 19-204 (205)
197 PF13401 AAA_22: AAA domain; P 98.3 3.3E-06 7.1E-11 57.0 6.8 109 20-134 3-125 (131)
198 KOG0730 AAA+-type ATPase [Post 98.3 1.6E-05 3.6E-10 65.8 11.8 129 13-144 460-613 (693)
199 CHL00181 cbbX CbbX; Provisiona 98.3 3E-05 6.5E-10 59.6 12.2 40 20-59 58-106 (287)
200 PLN02748 tRNA dimethylallyltra 98.3 9.6E-07 2.1E-11 71.6 4.1 36 19-54 20-55 (468)
201 TIGR02881 spore_V_K stage V sp 98.3 1.2E-05 2.6E-10 61.0 9.9 27 19-45 40-66 (261)
202 PF01712 dNK: Deoxynucleoside 98.2 1.7E-06 3.7E-11 59.7 4.6 76 120-201 63-143 (146)
203 PHA02575 1 deoxynucleoside mon 98.2 1.7E-06 3.6E-11 63.1 4.7 41 22-62 1-41 (227)
204 PRK09087 hypothetical protein; 98.2 5.2E-06 1.1E-10 61.6 7.4 39 21-59 44-82 (226)
205 TIGR00174 miaA tRNA isopenteny 98.2 9.8E-07 2.1E-11 67.3 3.3 32 23-54 1-32 (287)
206 PRK14974 cell division protein 98.2 9.2E-06 2E-10 63.5 8.8 27 19-45 138-164 (336)
207 TIGR01425 SRP54_euk signal rec 98.2 8.5E-06 1.9E-10 65.5 8.7 39 18-57 97-140 (429)
208 smart00382 AAA ATPases associa 98.2 1.2E-06 2.5E-11 59.5 3.4 28 21-48 2-29 (148)
209 PRK00771 signal recognition pa 98.2 1.1E-05 2.4E-10 65.2 9.4 27 19-45 93-119 (437)
210 PF05496 RuvB_N: Holliday junc 98.2 1.6E-06 3.5E-11 63.2 4.1 30 21-50 50-79 (233)
211 smart00763 AAA_PrkA PrkA AAA d 98.2 1.4E-06 3.1E-11 68.0 4.0 28 19-46 76-103 (361)
212 PF00448 SRP54: SRP54-type pro 98.2 2.6E-06 5.5E-11 61.8 5.0 26 21-46 1-26 (196)
213 CHL00195 ycf46 Ycf46; Provisio 98.2 1.3E-05 2.7E-10 65.9 9.4 34 19-52 257-290 (489)
214 TIGR01223 Pmev_kin_anim phosph 98.2 0.00013 2.9E-09 51.2 12.9 117 23-144 1-135 (182)
215 KOG0744 AAA+-type ATPase [Post 98.2 1.4E-06 3.1E-11 66.3 3.4 27 20-46 176-202 (423)
216 PRK05800 cobU adenosylcobinami 98.2 1.4E-06 3E-11 61.7 3.1 31 22-52 2-34 (170)
217 TIGR00390 hslU ATP-dependent p 98.2 1.8E-06 3.9E-11 68.7 3.9 34 20-53 46-79 (441)
218 COG2256 MGS1 ATPase related to 98.2 1.1E-05 2.4E-10 63.2 8.2 37 16-52 43-79 (436)
219 TIGR03708 poly_P_AMP_trns poly 98.2 0.00021 4.5E-09 58.6 15.7 148 18-186 296-472 (493)
220 PLN02796 D-glycerate 3-kinase 98.2 1.7E-06 3.6E-11 67.3 3.5 38 19-56 98-140 (347)
221 COG0324 MiaA tRNA delta(2)-iso 98.2 2.5E-06 5.5E-11 65.3 4.4 35 20-54 2-36 (308)
222 TIGR00959 ffh signal recogniti 98.2 3.9E-05 8.5E-10 62.0 11.3 39 18-57 96-140 (428)
223 PF07728 AAA_5: AAA domain (dy 98.2 2.6E-06 5.7E-11 58.3 4.0 28 24-51 2-29 (139)
224 COG3172 NadR Predicted ATPase/ 98.1 0.00033 7.2E-09 48.3 13.7 28 21-48 8-35 (187)
225 PRK05201 hslU ATP-dependent pr 98.1 2.5E-06 5.5E-11 67.9 3.8 34 20-53 49-82 (443)
226 PRK10867 signal recognition pa 98.1 1.8E-05 3.8E-10 64.0 8.6 40 18-58 97-142 (433)
227 PRK11889 flhF flagellar biosyn 98.1 5.7E-05 1.2E-09 59.9 11.1 27 19-45 239-265 (436)
228 PLN03046 D-glycerate 3-kinase; 98.1 2.7E-06 5.8E-11 67.6 3.6 39 18-56 209-252 (460)
229 PRK14729 miaA tRNA delta(2)-is 98.1 4.2E-06 9.1E-11 64.2 4.5 35 19-54 2-36 (300)
230 PRK09169 hypothetical protein; 98.1 4E-05 8.7E-10 71.2 11.1 111 19-144 2108-2220(2316)
231 PRK06620 hypothetical protein; 98.1 7.2E-05 1.6E-09 55.1 10.7 31 22-52 45-75 (214)
232 cd03115 SRP The signal recogni 98.1 4E-05 8.7E-10 54.4 9.1 31 23-53 2-37 (173)
233 KOG0780 Signal recognition par 98.1 3.1E-05 6.8E-10 60.5 8.7 115 16-136 96-227 (483)
234 KOG0707 Guanylate kinase [Nucl 98.1 0.0002 4.4E-09 52.3 12.3 162 22-202 38-221 (231)
235 TIGR00150 HI0065_YjeE ATPase, 98.1 5.4E-06 1.2E-10 55.9 4.0 29 20-48 21-49 (133)
236 PRK12723 flagellar biosynthesi 98.1 3.4E-05 7.3E-10 61.6 8.9 27 19-45 172-198 (388)
237 PRK10751 molybdopterin-guanine 98.0 6.2E-06 1.4E-10 58.2 4.1 28 19-46 4-31 (173)
238 PF03266 NTPase_1: NTPase; In 98.0 5.4E-06 1.2E-10 58.6 3.8 22 24-45 2-23 (168)
239 PF06745 KaiC: KaiC; InterPro 98.0 2.2E-05 4.7E-10 58.3 7.2 38 19-56 17-60 (226)
240 PRK12323 DNA polymerase III su 98.0 0.00024 5.1E-09 59.9 13.8 27 21-47 38-64 (700)
241 COG1126 GlnQ ABC-type polar am 98.0 4.5E-06 9.8E-11 60.2 3.2 27 16-42 23-49 (240)
242 PRK14956 DNA polymerase III su 98.0 8.4E-05 1.8E-09 60.6 10.8 28 21-48 40-67 (484)
243 PRK12377 putative replication 98.0 0.00032 6.9E-09 52.7 13.2 39 21-59 101-144 (248)
244 KOG2702 Predicted panthothenat 98.0 4.4E-05 9.5E-10 55.7 8.1 124 18-144 116-279 (323)
245 TIGR01618 phage_P_loop phage n 98.0 5.9E-06 1.3E-10 60.7 3.7 35 19-55 10-44 (220)
246 PF13245 AAA_19: Part of AAA d 98.0 8.2E-06 1.8E-10 49.6 3.7 26 20-45 9-35 (76)
247 COG0541 Ffh Signal recognition 98.0 3.2E-05 6.9E-10 61.4 7.7 114 17-132 96-222 (451)
248 TIGR01650 PD_CobS cobaltochela 98.0 6.3E-06 1.4E-10 63.8 3.8 31 21-51 64-94 (327)
249 PHA03133 thymidine kinase; Pro 98.0 0.0013 2.8E-08 51.4 16.2 27 20-46 39-65 (368)
250 TIGR03877 thermo_KaiC_1 KaiC d 98.0 2.6E-05 5.6E-10 58.4 6.9 35 19-53 19-58 (237)
251 KOG0739 AAA+-type ATPase [Post 98.0 0.00022 4.8E-09 54.2 11.7 43 19-61 163-208 (439)
252 PRK14955 DNA polymerase III su 98.0 0.00042 9.2E-09 55.9 13.9 28 21-48 38-65 (397)
253 PF03308 ArgK: ArgK protein; 98.0 9.2E-06 2E-10 60.4 4.0 27 19-45 27-53 (266)
254 cd01124 KaiC KaiC is a circadi 98.0 8E-06 1.7E-10 58.7 3.6 31 23-53 1-36 (187)
255 PRK14961 DNA polymerase III su 98.0 0.00043 9.3E-09 55.2 13.7 27 21-47 38-64 (363)
256 PF07726 AAA_3: ATPase family 98.0 4.4E-06 9.5E-11 55.6 1.9 28 24-51 2-29 (131)
257 cd00009 AAA The AAA+ (ATPases 97.9 1.3E-05 2.8E-10 54.8 4.4 26 20-45 18-43 (151)
258 PRK03992 proteasome-activating 97.9 1E-05 2.2E-10 64.9 4.3 40 18-57 162-203 (389)
259 COG0552 FtsY Signal recognitio 97.9 0.00012 2.6E-09 56.4 9.8 92 18-110 136-234 (340)
260 PF03215 Rad17: Rad17 cell cyc 97.9 1.1E-05 2.5E-10 66.6 4.6 31 20-50 44-74 (519)
261 PF01745 IPT: Isopentenyl tran 97.9 1.1E-05 2.4E-10 58.2 3.8 120 22-144 2-138 (233)
262 PRK12402 replication factor C 97.9 0.00097 2.1E-08 52.5 15.2 28 19-46 34-61 (337)
263 PRK04328 hypothetical protein; 97.9 3.5E-05 7.6E-10 58.1 6.7 34 19-52 21-59 (249)
264 PRK06067 flagellar accessory p 97.9 3.5E-05 7.6E-10 57.6 6.7 39 19-57 23-66 (234)
265 PRK14958 DNA polymerase III su 97.9 0.00064 1.4E-08 56.5 14.4 28 21-48 38-65 (509)
266 PRK09435 membrane ATPase/prote 97.9 1.2E-05 2.7E-10 62.7 4.2 28 18-45 53-80 (332)
267 PRK06645 DNA polymerase III su 97.9 0.00038 8.3E-09 57.6 13.0 28 21-48 43-70 (507)
268 PF00910 RNA_helicase: RNA hel 97.9 8.8E-06 1.9E-10 53.1 2.9 23 24-46 1-23 (107)
269 PRK14957 DNA polymerase III su 97.9 0.00056 1.2E-08 57.1 13.9 27 21-47 38-64 (546)
270 PTZ00454 26S protease regulato 97.9 1.4E-05 3.1E-10 64.1 4.5 34 18-51 176-209 (398)
271 TIGR02640 gas_vesic_GvpN gas v 97.9 1.3E-05 2.9E-10 60.8 4.1 30 21-50 21-50 (262)
272 PRK14964 DNA polymerase III su 97.9 0.00049 1.1E-08 56.6 13.3 28 21-48 35-62 (491)
273 PRK05342 clpX ATP-dependent pr 97.9 1.1E-05 2.4E-10 64.9 3.6 31 22-52 109-139 (412)
274 TIGR01526 nadR_NMN_Atrans nico 97.9 1.5E-05 3.2E-10 62.4 4.2 31 21-51 162-192 (325)
275 cd00544 CobU Adenosylcobinamid 97.9 7.4E-05 1.6E-09 52.8 7.4 29 23-51 1-31 (169)
276 TIGR03689 pup_AAA proteasome A 97.9 0.00014 3E-09 60.0 9.9 30 19-48 214-243 (512)
277 COG1855 ATPase (PilT family) [ 97.9 1.1E-05 2.3E-10 64.3 3.3 27 20-46 262-288 (604)
278 COG1703 ArgK Putative periplas 97.9 1.4E-05 3.1E-10 60.4 3.7 29 17-45 47-75 (323)
279 TIGR01242 26Sp45 26S proteasom 97.9 1.6E-05 3.6E-10 63.3 4.4 33 19-51 154-186 (364)
280 PRK14951 DNA polymerase III su 97.9 0.00088 1.9E-08 56.7 14.6 29 20-48 37-65 (618)
281 CHL00176 ftsH cell division pr 97.9 0.00055 1.2E-08 58.3 13.5 35 18-52 213-247 (638)
282 TIGR02012 tigrfam_recA protein 97.9 8.7E-05 1.9E-09 57.6 8.1 84 19-105 53-141 (321)
283 KOG0738 AAA+-type ATPase [Post 97.9 0.00023 5E-09 55.9 10.2 40 20-59 243-285 (491)
284 TIGR00635 ruvB Holliday juncti 97.9 1.9E-05 4.1E-10 61.3 4.4 31 19-49 28-58 (305)
285 COG3911 Predicted ATPase [Gene 97.9 1.8E-05 3.8E-10 53.7 3.5 29 19-48 7-35 (183)
286 PLN00020 ribulose bisphosphate 97.9 1.6E-05 3.6E-10 62.2 3.9 42 18-59 145-188 (413)
287 COG4240 Predicted kinase [Gene 97.9 2.4E-05 5.2E-10 56.9 4.4 43 17-59 46-94 (300)
288 cd00983 recA RecA is a bacter 97.9 0.00012 2.5E-09 57.0 8.5 84 19-105 53-141 (325)
289 PRK14949 DNA polymerase III su 97.9 0.00052 1.1E-08 59.8 13.0 28 21-48 38-65 (944)
290 COG0466 Lon ATP-dependent Lon 97.8 1.7E-05 3.6E-10 66.5 4.0 37 18-54 347-385 (782)
291 PF06309 Torsin: Torsin; Inte 97.8 2.8E-05 6E-10 51.6 4.2 31 15-45 47-77 (127)
292 PRK07003 DNA polymerase III su 97.8 0.00049 1.1E-08 59.0 12.5 28 21-48 38-65 (830)
293 cd01131 PilT Pilus retraction 97.8 1.7E-05 3.7E-10 57.7 3.6 24 23-46 3-26 (198)
294 PRK08116 hypothetical protein; 97.8 0.00067 1.4E-08 51.7 12.3 39 21-59 114-157 (268)
295 PRK07994 DNA polymerase III su 97.8 0.00044 9.5E-09 58.7 12.3 28 21-48 38-65 (647)
296 TIGR02655 circ_KaiC circadian 97.8 2.8E-05 6.1E-10 64.2 5.2 88 19-106 261-362 (484)
297 TIGR00382 clpX endopeptidase C 97.8 1.8E-05 4E-10 63.5 3.9 31 22-52 117-147 (413)
298 TIGR00362 DnaA chromosomal rep 97.8 0.001 2.2E-08 53.9 14.0 40 21-60 136-182 (405)
299 KOG2004 Mitochondrial ATP-depe 97.8 1.6E-05 3.4E-10 66.7 3.6 37 19-55 436-474 (906)
300 TIGR00101 ureG urease accessor 97.8 2.1E-05 4.5E-10 57.2 3.9 26 21-46 1-26 (199)
301 PRK12726 flagellar biosynthesi 97.8 0.0004 8.6E-09 55.0 11.1 36 18-53 203-243 (407)
302 PTZ00361 26 proteosome regulat 97.8 2.5E-05 5.4E-10 63.3 4.6 34 18-51 214-247 (438)
303 PRK07764 DNA polymerase III su 97.8 0.00049 1.1E-08 60.1 12.6 28 21-48 37-64 (824)
304 PF03029 ATP_bind_1: Conserved 97.8 1.3E-05 2.8E-10 59.9 2.7 21 26-46 1-21 (238)
305 COG4619 ABC-type uncharacteriz 97.8 1.8E-05 3.8E-10 55.1 3.1 31 15-45 23-53 (223)
306 PRK14086 dnaA chromosomal repl 97.8 0.00042 9.1E-09 58.2 11.7 40 22-61 315-361 (617)
307 PF03205 MobB: Molybdopterin g 97.8 2.3E-05 5E-10 53.7 3.6 24 22-45 1-24 (140)
308 PRK04195 replication factor C 97.8 2.1E-05 4.5E-10 65.0 4.0 32 21-52 39-70 (482)
309 PF13191 AAA_16: AAA ATPase do 97.8 1.9E-05 4.1E-10 56.5 3.4 30 17-46 20-49 (185)
310 PF07724 AAA_2: AAA domain (Cd 97.8 2.3E-05 5E-10 55.5 3.7 25 23-47 5-29 (171)
311 TIGR01241 FtsH_fam ATP-depende 97.8 2.2E-05 4.8E-10 65.1 4.1 35 18-52 85-119 (495)
312 cd00820 PEPCK_HprK Phosphoenol 97.8 2.1E-05 4.6E-10 50.9 3.1 25 18-42 12-36 (107)
313 PRK00080 ruvB Holliday junctio 97.8 2.6E-05 5.7E-10 61.2 4.3 29 21-49 51-79 (328)
314 PRK14960 DNA polymerase III su 97.8 0.00046 1E-08 58.3 11.6 28 21-48 37-64 (702)
315 KOG0734 AAA+-type ATPase conta 97.8 0.00022 4.8E-09 58.2 9.4 39 13-51 329-367 (752)
316 KOG1969 DNA replication checkp 97.8 2.2E-05 4.8E-10 65.9 3.9 34 19-52 324-357 (877)
317 PRK14952 DNA polymerase III su 97.8 0.00071 1.5E-08 57.0 12.8 28 21-48 35-62 (584)
318 PF13555 AAA_29: P-loop contai 97.8 2.8E-05 6E-10 45.0 3.2 22 22-43 24-45 (62)
319 PF02367 UPF0079: Uncharacteri 97.8 3.3E-05 7.2E-10 51.4 3.9 29 19-47 13-41 (123)
320 PRK14088 dnaA chromosomal repl 97.8 0.00058 1.3E-08 55.8 11.9 40 22-61 131-177 (440)
321 COG1136 SalX ABC-type antimicr 97.8 2.1E-05 4.7E-10 57.7 3.3 31 15-45 25-55 (226)
322 PHA02244 ATPase-like protein 97.8 2.3E-05 5E-10 61.6 3.6 34 22-55 120-153 (383)
323 COG2812 DnaX DNA polymerase II 97.8 9.5E-05 2.1E-09 60.7 7.1 135 23-162 40-189 (515)
324 PRK14969 DNA polymerase III su 97.8 0.00084 1.8E-08 56.1 12.8 28 21-48 38-65 (527)
325 TIGR03878 thermo_KaiC_2 KaiC d 97.8 0.00013 2.9E-09 55.3 7.5 34 20-53 35-73 (259)
326 TIGR03420 DnaA_homol_Hda DnaA 97.8 3.5E-05 7.7E-10 57.1 4.3 39 18-56 35-78 (226)
327 KOG0731 AAA+-type ATPase conta 97.8 0.00024 5.3E-09 60.6 9.6 129 14-144 337-493 (774)
328 PRK14954 DNA polymerase III su 97.8 0.0014 3E-08 55.6 14.1 28 21-48 38-65 (620)
329 TIGR01243 CDC48 AAA family ATP 97.8 0.00024 5.1E-09 61.8 9.9 33 19-51 485-517 (733)
330 COG2255 RuvB Holliday junction 97.8 2.7E-05 5.8E-10 58.6 3.5 29 21-49 52-80 (332)
331 COG1222 RPT1 ATP-dependent 26S 97.8 6.7E-05 1.4E-09 58.2 5.7 62 6-67 168-233 (406)
332 PRK10416 signal recognition pa 97.8 3.4E-05 7.4E-10 60.1 4.2 28 18-45 111-138 (318)
333 cd01130 VirB11-like_ATPase Typ 97.8 1.7E-05 3.8E-10 57.1 2.4 31 16-46 20-50 (186)
334 TIGR00064 ftsY signal recognit 97.7 3.9E-05 8.5E-10 58.5 4.3 28 18-45 69-96 (272)
335 PRK08903 DnaA regulatory inact 97.7 6E-05 1.3E-09 56.0 5.2 37 20-56 41-82 (227)
336 TIGR03015 pepcterm_ATPase puta 97.7 3.1E-05 6.7E-10 59.0 3.8 27 20-46 42-68 (269)
337 PRK13342 recombination factor 97.7 3.7E-05 7.9E-10 62.3 4.3 35 17-51 32-66 (413)
338 PRK14490 putative bifunctional 97.7 3.3E-05 7.1E-10 61.6 3.9 28 19-46 3-30 (369)
339 PRK05896 DNA polymerase III su 97.7 0.0014 3E-08 55.2 13.4 27 21-47 38-64 (605)
340 PRK05973 replicative DNA helic 97.7 3.1E-05 6.6E-10 57.6 3.4 34 19-52 62-100 (237)
341 PRK12422 chromosomal replicati 97.7 0.0047 1E-07 50.6 16.1 38 22-59 142-184 (445)
342 PRK11784 tRNA 2-selenouridine 97.7 0.00011 2.5E-09 57.7 6.5 111 21-144 141-256 (345)
343 PRK14950 DNA polymerase III su 97.7 0.0013 2.8E-08 55.8 13.2 28 21-48 38-65 (585)
344 COG1116 TauB ABC-type nitrate/ 97.7 3.3E-05 7.2E-10 57.1 3.3 31 15-45 23-53 (248)
345 TIGR02880 cbbX_cfxQ probable R 97.7 5E-05 1.1E-09 58.4 4.4 23 23-45 60-82 (284)
346 cd01918 HprK_C HprK/P, the bif 97.7 3.8E-05 8.2E-10 52.8 3.4 32 21-53 14-45 (149)
347 PF10662 PduV-EutP: Ethanolami 97.7 3.3E-05 7E-10 52.6 3.0 24 22-45 2-25 (143)
348 PRK09354 recA recombinase A; P 97.7 0.00023 4.9E-09 55.9 8.0 84 19-105 58-146 (349)
349 PRK13695 putative NTPase; Prov 97.7 4.2E-05 9.1E-10 54.4 3.6 24 22-45 1-24 (174)
350 TIGR00073 hypB hydrogenase acc 97.7 4.3E-05 9.2E-10 56.0 3.8 31 16-46 17-47 (207)
351 KOG0234 Fructose-6-phosphate 2 97.7 0.00096 2.1E-08 53.3 11.4 151 16-171 23-196 (438)
352 PRK09111 DNA polymerase III su 97.7 0.0015 3.2E-08 55.3 13.2 29 21-49 46-74 (598)
353 PRK15455 PrkA family serine pr 97.7 3.8E-05 8.2E-10 63.6 3.7 28 19-46 101-128 (644)
354 PRK08084 DNA replication initi 97.7 5.5E-05 1.2E-09 56.5 4.3 35 20-54 44-83 (235)
355 PRK06893 DNA replication initi 97.7 6E-05 1.3E-09 56.1 4.4 33 21-53 39-76 (229)
356 PF00308 Bac_DnaA: Bacterial d 97.7 0.0004 8.6E-09 51.4 8.7 40 22-61 35-81 (219)
357 COG1219 ClpX ATP-dependent pro 97.7 4.5E-05 9.8E-10 58.3 3.7 32 21-52 97-128 (408)
358 TIGR03499 FlhF flagellar biosy 97.7 4.9E-05 1.1E-09 58.3 4.0 27 19-45 192-218 (282)
359 COG0378 HypB Ni2+-binding GTPa 97.7 5.2E-05 1.1E-09 53.9 3.7 35 18-52 9-48 (202)
360 COG0464 SpoVK ATPases of the A 97.7 0.00047 1E-08 57.3 10.0 34 19-52 274-307 (494)
361 PRK00149 dnaA chromosomal repl 97.7 0.00067 1.4E-08 55.7 10.7 39 22-60 149-194 (450)
362 TIGR02655 circ_KaiC circadian 97.7 0.00014 3.1E-09 60.1 6.8 35 19-53 19-59 (484)
363 KOG4238 Bifunctional ATP sulfu 97.7 0.00018 3.9E-09 55.9 6.8 113 20-144 49-170 (627)
364 COG1224 TIP49 DNA helicase TIP 97.7 3.2E-05 6.9E-10 59.9 2.7 43 20-62 64-110 (450)
365 PF00005 ABC_tran: ABC transpo 97.7 2.8E-05 6E-10 53.0 2.2 29 17-45 7-35 (137)
366 PF01695 IstB_IS21: IstB-like 97.7 0.00011 2.3E-09 52.5 5.3 40 20-59 46-90 (178)
367 PF00693 Herpes_TK: Thymidine 97.7 0.0043 9.3E-08 47.0 13.8 27 125-153 147-173 (281)
368 PRK11034 clpA ATP-dependent Cl 97.7 0.00011 2.3E-09 63.6 6.1 34 19-52 485-519 (758)
369 PRK08533 flagellar accessory p 97.6 0.00016 3.5E-09 53.9 6.3 25 19-43 22-46 (230)
370 PRK06835 DNA replication prote 97.6 0.00063 1.4E-08 53.3 9.8 38 22-59 184-226 (329)
371 PHA02624 large T antigen; Prov 97.6 6.6E-05 1.4E-09 62.4 4.5 34 19-52 429-462 (647)
372 cd03116 MobB Molybdenum is an 97.6 6.4E-05 1.4E-09 52.6 3.8 25 22-46 2-26 (159)
373 TIGR00176 mobB molybdopterin-g 97.6 4.8E-05 1E-09 53.0 3.2 23 23-45 1-23 (155)
374 PRK14962 DNA polymerase III su 97.6 5.3E-05 1.2E-09 62.1 3.9 27 21-47 36-62 (472)
375 PRK06526 transposase; Provisio 97.6 8.4E-05 1.8E-09 56.1 4.7 40 20-59 97-141 (254)
376 COG1120 FepC ABC-type cobalami 97.6 4.1E-05 8.9E-10 57.4 3.0 32 15-46 22-53 (258)
377 KOG1970 Checkpoint RAD17-RFC c 97.6 5.9E-05 1.3E-09 61.5 4.0 32 19-50 108-139 (634)
378 PRK14965 DNA polymerase III su 97.6 0.0032 6.8E-08 53.3 14.3 28 21-48 38-65 (576)
379 COG1124 DppF ABC-type dipeptid 97.6 5.1E-05 1.1E-09 55.8 3.2 29 17-45 29-57 (252)
380 cd01120 RecA-like_NTPases RecA 97.6 4.9E-05 1.1E-09 53.0 3.1 23 23-45 1-23 (165)
381 PF08477 Miro: Miro-like prote 97.6 5.7E-05 1.2E-09 50.0 3.2 23 23-45 1-23 (119)
382 cd00984 DnaB_C DnaB helicase C 97.6 0.00077 1.7E-08 50.5 9.6 27 19-45 11-37 (242)
383 TIGR01166 cbiO cobalt transpor 97.6 5.6E-05 1.2E-09 54.6 3.2 30 16-45 13-42 (190)
384 PRK07940 DNA polymerase III su 97.6 0.002 4.2E-08 51.9 12.2 29 20-48 35-63 (394)
385 TIGR03881 KaiC_arch_4 KaiC dom 97.6 0.00023 4.9E-09 53.0 6.5 25 19-43 18-42 (229)
386 PRK08691 DNA polymerase III su 97.6 0.0016 3.5E-08 55.5 12.1 28 21-48 38-65 (709)
387 TIGR01243 CDC48 AAA family ATP 97.6 7.9E-05 1.7E-09 64.7 4.6 33 19-51 210-242 (733)
388 TIGR00750 lao LAO/AO transport 97.6 8.2E-05 1.8E-09 57.7 4.3 27 19-45 32-58 (300)
389 cd01393 recA_like RecA is a b 97.6 0.00027 5.7E-09 52.5 6.8 26 19-44 17-42 (226)
390 PF06068 TIP49: TIP49 C-termin 97.6 6.1E-05 1.3E-09 59.0 3.3 36 21-56 50-89 (398)
391 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 6E-05 1.3E-09 55.6 3.2 30 16-45 25-54 (218)
392 TIGR00960 3a0501s02 Type II (G 97.6 6.2E-05 1.3E-09 55.5 3.2 30 16-45 24-53 (216)
393 COG1127 Ttg2A ABC-type transpo 97.6 0.00066 1.4E-08 50.1 8.4 115 15-129 28-169 (263)
394 TIGR02639 ClpA ATP-dependent C 97.6 0.00019 4E-09 62.4 6.6 33 19-51 481-514 (731)
395 COG1419 FlhF Flagellar GTP-bin 97.6 0.00035 7.5E-09 55.4 7.4 34 20-53 202-242 (407)
396 cd03292 ABC_FtsE_transporter F 97.6 6.4E-05 1.4E-09 55.3 3.2 30 16-45 22-51 (214)
397 PRK14948 DNA polymerase III su 97.6 0.0027 5.9E-08 54.0 13.2 28 21-48 38-65 (620)
398 PRK10463 hydrogenase nickel in 97.6 7.4E-05 1.6E-09 57.0 3.5 29 17-45 100-128 (290)
399 cd03225 ABC_cobalt_CbiO_domain 97.6 6.8E-05 1.5E-09 55.0 3.3 30 16-45 22-51 (211)
400 COG1484 DnaC DNA replication p 97.6 0.0013 2.8E-08 49.8 10.1 40 20-59 104-148 (254)
401 PLN03025 replication factor C 97.6 7.9E-05 1.7E-09 58.3 3.7 27 20-46 33-59 (319)
402 TIGR02237 recomb_radB DNA repa 97.6 0.0001 2.2E-09 54.0 4.1 35 19-53 10-49 (209)
403 PRK07133 DNA polymerase III su 97.6 0.0034 7.3E-08 54.0 13.5 28 21-48 40-67 (725)
404 PHA02544 44 clamp loader, smal 97.6 0.0001 2.2E-09 57.6 4.3 30 20-49 42-71 (316)
405 cd03269 ABC_putative_ATPase Th 97.6 7.3E-05 1.6E-09 54.9 3.3 31 15-45 20-50 (210)
406 cd03238 ABC_UvrA The excision 97.6 7.3E-05 1.6E-09 53.2 3.1 28 15-42 15-42 (176)
407 PRK13768 GTPase; Provisional 97.5 8.8E-05 1.9E-09 56.1 3.7 25 21-45 2-26 (253)
408 PRK14959 DNA polymerase III su 97.5 0.0048 1E-07 52.2 14.1 28 21-48 38-65 (624)
409 cd03259 ABC_Carb_Solutes_like 97.5 7.7E-05 1.7E-09 54.8 3.3 30 16-45 21-50 (213)
410 cd03224 ABC_TM1139_LivF_branch 97.5 7.4E-05 1.6E-09 55.3 3.3 30 16-45 21-50 (222)
411 COG3839 MalK ABC-type sugar tr 97.5 7.2E-05 1.6E-09 58.3 3.2 30 16-45 24-53 (338)
412 PRK11629 lolD lipoprotein tran 97.5 7.5E-05 1.6E-09 55.7 3.2 30 16-45 30-59 (233)
413 PRK09183 transposase/IS protei 97.5 0.00017 3.7E-09 54.7 5.2 38 20-57 101-143 (259)
414 PRK14722 flhF flagellar biosyn 97.5 0.0001 2.3E-09 58.4 4.1 28 18-45 134-161 (374)
415 cd03263 ABC_subfamily_A The AB 97.5 7.7E-05 1.7E-09 55.1 3.3 30 16-45 23-52 (220)
416 KOG0743 AAA+-type ATPase [Post 97.5 6.8E-05 1.5E-09 59.8 3.0 31 21-51 235-265 (457)
417 TIGR02673 FtsE cell division A 97.5 7.9E-05 1.7E-09 54.8 3.3 30 16-45 23-52 (214)
418 cd01394 radB RadB. The archaea 97.5 0.00011 2.4E-09 54.2 4.1 34 19-52 17-55 (218)
419 cd03283 ABC_MutS-like MutS-lik 97.5 8.5E-05 1.8E-09 54.1 3.3 30 14-43 18-47 (199)
420 TIGR02211 LolD_lipo_ex lipopro 97.5 8E-05 1.7E-09 55.1 3.3 30 16-45 26-55 (221)
421 TIGR02315 ABC_phnC phosphonate 97.5 8E-05 1.7E-09 55.9 3.3 30 16-45 23-52 (243)
422 PF13086 AAA_11: AAA domain; P 97.5 6.7E-05 1.5E-09 55.6 2.9 25 21-45 17-41 (236)
423 PRK15177 Vi polysaccharide exp 97.5 8.1E-05 1.7E-09 54.8 3.2 30 16-45 8-37 (213)
424 cd03219 ABC_Mj1267_LivG_branch 97.5 7.5E-05 1.6E-09 55.8 3.1 30 16-45 21-50 (236)
425 cd03226 ABC_cobalt_CbiO_domain 97.5 7.8E-05 1.7E-09 54.5 3.1 30 16-45 21-50 (205)
426 cd03301 ABC_MalK_N The N-termi 97.5 8.2E-05 1.8E-09 54.7 3.3 30 16-45 21-50 (213)
427 COG2884 FtsE Predicted ATPase 97.5 0.00011 2.4E-09 52.2 3.7 30 16-45 23-52 (223)
428 COG2326 Uncharacterized conser 97.5 0.012 2.5E-07 43.9 14.1 159 19-201 72-262 (270)
429 cd03264 ABC_drug_resistance_li 97.5 7.5E-05 1.6E-09 54.8 3.0 26 19-45 24-49 (211)
430 cd03261 ABC_Org_Solvent_Resist 97.5 8.2E-05 1.8E-09 55.6 3.2 30 16-45 21-50 (235)
431 PRK13541 cytochrome c biogenes 97.5 8.6E-05 1.9E-09 53.8 3.2 31 15-45 20-50 (195)
432 cd03296 ABC_CysA_sulfate_impor 97.5 8.4E-05 1.8E-09 55.7 3.3 30 16-45 23-52 (239)
433 cd03223 ABCD_peroxisomal_ALDP 97.5 9.2E-05 2E-09 52.3 3.3 30 16-45 22-51 (166)
434 cd03262 ABC_HisP_GlnQ_permease 97.5 8.9E-05 1.9E-09 54.5 3.3 30 16-45 21-50 (213)
435 PRK09302 circadian clock prote 97.5 0.00032 7E-09 58.5 7.0 34 19-52 29-68 (509)
436 COG0396 sufC Cysteine desulfur 97.5 8.8E-05 1.9E-09 54.2 3.2 34 16-49 25-58 (251)
437 TIGR03608 L_ocin_972_ABC putat 97.5 8.4E-05 1.8E-09 54.3 3.1 30 16-45 19-48 (206)
438 cd03235 ABC_Metallic_Cations A 97.5 8E-05 1.7E-09 54.8 3.0 30 16-45 20-49 (213)
439 PRK08181 transposase; Validate 97.5 0.00021 4.6E-09 54.3 5.3 40 20-59 105-149 (269)
440 TIGR00763 lon ATP-dependent pr 97.5 0.00012 2.5E-09 64.0 4.5 32 20-51 346-377 (775)
441 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 8.8E-05 1.9E-09 55.5 3.3 30 16-45 22-51 (236)
442 cd03258 ABC_MetN_methionine_tr 97.5 8.9E-05 1.9E-09 55.3 3.3 30 16-45 26-55 (233)
443 cd03229 ABC_Class3 This class 97.5 9.4E-05 2E-09 52.8 3.3 30 16-45 21-50 (178)
444 PRK10247 putative ABC transpor 97.5 9.1E-05 2E-09 55.0 3.3 30 16-45 28-57 (225)
445 PF04665 Pox_A32: Poxvirus A32 97.5 0.00011 2.5E-09 54.6 3.7 29 18-46 10-38 (241)
446 cd03256 ABC_PhnC_transporter A 97.5 9E-05 2E-09 55.5 3.3 30 16-45 22-51 (241)
447 cd03293 ABC_NrtD_SsuB_transpor 97.5 8.3E-05 1.8E-09 55.0 3.0 30 16-45 25-54 (220)
448 COG2874 FlaH Predicted ATPases 97.5 0.00066 1.4E-08 49.2 7.4 126 19-144 26-177 (235)
449 PRK13851 type IV secretion sys 97.5 5.2E-05 1.1E-09 59.6 2.0 29 18-46 159-187 (344)
450 cd03260 ABC_PstB_phosphate_tra 97.5 9.4E-05 2E-09 55.0 3.3 30 16-45 21-50 (227)
451 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.00029 6.2E-09 52.3 5.8 34 20-53 15-53 (224)
452 KOG1532 GTPase XAB1, interacts 97.5 0.00011 2.4E-09 55.0 3.6 30 17-46 15-44 (366)
453 PF01926 MMR_HSR1: 50S ribosom 97.5 9.6E-05 2.1E-09 48.8 3.0 20 24-43 2-21 (116)
454 cd03257 ABC_NikE_OppD_transpor 97.5 9.3E-05 2E-09 55.0 3.2 31 15-45 25-55 (228)
455 cd03232 ABC_PDR_domain2 The pl 97.5 8.9E-05 1.9E-09 53.6 3.0 29 16-44 28-56 (192)
456 TIGR00678 holB DNA polymerase 97.5 0.0073 1.6E-07 43.5 13.0 27 21-47 14-40 (188)
457 PRK07952 DNA replication prote 97.5 0.00019 4.2E-09 53.8 4.8 38 22-59 100-142 (244)
458 PRK10584 putative ABC transpor 97.5 9.6E-05 2.1E-09 54.9 3.2 30 16-45 31-60 (228)
459 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 9.7E-05 2.1E-09 50.9 3.0 30 16-45 21-50 (144)
460 cd03247 ABCC_cytochrome_bd The 97.5 0.0001 2.2E-09 52.7 3.2 31 15-45 22-52 (178)
461 COG1220 HslU ATP-dependent pro 97.5 0.00013 2.8E-09 56.3 3.8 32 20-51 49-80 (444)
462 PRK04296 thymidine kinase; Pro 97.5 0.00012 2.6E-09 52.9 3.5 25 21-45 2-26 (190)
463 cd03230 ABC_DR_subfamily_A Thi 97.5 0.00011 2.3E-09 52.3 3.2 30 16-45 21-50 (173)
464 COG1223 Predicted ATPase (AAA+ 97.5 0.0001 2.2E-09 55.0 3.1 41 20-60 150-192 (368)
465 TIGR02770 nickel_nikD nickel i 97.5 0.0001 2.2E-09 54.9 3.2 30 16-45 7-36 (230)
466 cd03246 ABCC_Protease_Secretio 97.5 0.00011 2.4E-09 52.2 3.3 30 16-45 23-52 (173)
467 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00011 2.5E-09 52.3 3.3 29 17-45 21-49 (177)
468 PRK13764 ATPase; Provisional 97.5 0.00011 2.4E-09 61.6 3.7 28 19-46 255-282 (602)
469 PRK14250 phosphate ABC transpo 97.5 0.0001 2.3E-09 55.3 3.2 30 16-45 24-53 (241)
470 PF01078 Mg_chelatase: Magnesi 97.5 8.7E-05 1.9E-09 53.7 2.6 26 21-46 22-47 (206)
471 COG3842 PotA ABC-type spermidi 97.5 0.00011 2.4E-09 57.6 3.4 31 15-45 25-55 (352)
472 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00036 7.7E-09 61.5 6.8 39 18-56 592-636 (852)
473 cd03265 ABC_DrrA DrrA is the A 97.5 0.00012 2.5E-09 54.2 3.3 30 16-45 21-50 (220)
474 cd04163 Era Era subfamily. Er 97.5 0.00012 2.6E-09 51.0 3.2 24 21-44 3-26 (168)
475 TIGR03410 urea_trans_UrtE urea 97.5 0.00011 2.4E-09 54.7 3.2 30 16-45 21-50 (230)
476 PRK11124 artP arginine transpo 97.5 0.00011 2.5E-09 55.1 3.3 30 16-45 23-52 (242)
477 TIGR01978 sufC FeS assembly AT 97.5 0.00011 2.4E-09 55.1 3.3 29 16-44 21-49 (243)
478 TIGR02323 CP_lyasePhnK phospho 97.5 0.00011 2.3E-09 55.6 3.2 30 16-45 24-53 (253)
479 PRK06731 flhF flagellar biosyn 97.5 0.00078 1.7E-08 51.3 7.8 26 20-45 74-99 (270)
480 PRK06647 DNA polymerase III su 97.5 0.0058 1.2E-07 51.5 13.5 28 21-48 38-65 (563)
481 COG1763 MobB Molybdopterin-gua 97.5 0.00014 3E-09 50.8 3.4 26 21-46 2-27 (161)
482 cd03218 ABC_YhbG The ABC trans 97.5 0.00012 2.6E-09 54.6 3.4 30 16-45 21-50 (232)
483 PRK11248 tauB taurine transpor 97.5 0.00011 2.4E-09 55.6 3.2 30 16-45 22-51 (255)
484 cd03214 ABC_Iron-Siderophores_ 97.5 0.00012 2.6E-09 52.4 3.3 30 16-45 20-49 (180)
485 PRK14247 phosphate ABC transpo 97.4 0.00012 2.5E-09 55.3 3.3 30 16-45 24-53 (250)
486 COG1117 PstB ABC-type phosphat 97.4 0.00013 2.9E-09 52.8 3.3 29 16-45 28-56 (253)
487 PRK14242 phosphate transporter 97.4 0.00011 2.4E-09 55.5 3.2 28 17-44 28-55 (253)
488 cd03268 ABC_BcrA_bacitracin_re 97.4 0.00012 2.6E-09 53.7 3.2 30 16-45 21-50 (208)
489 TIGR00416 sms DNA repair prote 97.4 0.00025 5.4E-09 58.0 5.3 35 20-54 93-132 (454)
490 COG0714 MoxR-like ATPases [Gen 97.4 0.00014 2.9E-09 57.3 3.7 31 21-51 43-73 (329)
491 TIGR02524 dot_icm_DotB Dot/Icm 97.4 0.00013 2.8E-09 57.8 3.6 26 20-45 133-158 (358)
492 PRK13539 cytochrome c biogenes 97.4 0.00012 2.6E-09 53.6 3.2 30 16-45 23-52 (207)
493 TIGR01184 ntrCD nitrate transp 97.4 0.00012 2.6E-09 54.5 3.2 30 16-45 6-35 (230)
494 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00012 2.7E-09 53.4 3.3 31 15-45 25-55 (204)
495 PRK06851 hypothetical protein; 97.4 0.00021 4.5E-09 56.5 4.7 31 15-45 24-54 (367)
496 cd03215 ABC_Carb_Monos_II This 97.4 0.00012 2.6E-09 52.5 3.1 29 17-45 22-50 (182)
497 PRK10908 cell division protein 97.4 0.00013 2.7E-09 54.1 3.3 30 16-45 23-52 (222)
498 PRK10865 protein disaggregatio 97.4 0.00084 1.8E-08 59.3 8.9 37 19-55 595-637 (857)
499 cd03216 ABC_Carb_Monos_I This 97.4 0.00013 2.7E-09 51.4 3.1 30 16-45 21-50 (163)
500 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00012 2.6E-09 54.6 3.2 30 16-45 23-52 (234)
No 1
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-35 Score=200.95 Aligned_cols=185 Identities=55% Similarity=1.003 Sum_probs=172.6
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
...+|++|+|.|+|||||-|+|..++++|+|.++|.+|++|..... +++.+..+.+.+..|..+|.+...+++++++..
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999988 999999999999999999999999999999998
Q ss_pred cCC-CeEEEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388 96 SGN-DKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 96 ~~~-~~~i~dg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
... .+++|||||++..+...|.+ ... .+++++|++|+.+++.+|+..| .+.|.++..+.+.+|+..|.+...|+.
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~-~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFER-KIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI 162 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence 664 55999999999999999999 555 6999999999999999999999 334899999999999999999999999
Q ss_pred HHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
++|+..+.+..+|++.++++++..+.+.+..
T Consensus 163 ~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 163 EYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999887754
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=2.5e-33 Score=206.43 Aligned_cols=183 Identities=30% Similarity=0.574 Sum_probs=167.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+..++.|+|.|+|||||||+|+.|++++|+.+++.+++++..+..++..+..+.+++..|..+|+++...++.+.+....
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 107 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 107 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC-----------------------
Q 028388 98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ----------------------- 146 (209)
Q Consensus 98 -~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r----~~----------------------- 146 (209)
..+||+||||++..+...|..+ ....++.+|+|++|.+++.+|+..| ..
T Consensus 108 ~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~ 187 (244)
T PLN02674 108 CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 187 (244)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCc
Confidence 6899999999999999987763 3468999999999999999999998 11
Q ss_pred --CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
.|.++..+.+.+|+..|++...++.++|...+.++.+|++.+++++++.|...+
T Consensus 188 L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 188 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 277889999999999999999999999999999999999999999999998876
No 3
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=4.7e-33 Score=205.73 Aligned_cols=194 Identities=29% Similarity=0.558 Sum_probs=175.5
Q ss_pred CcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH
Q 028388 7 TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86 (209)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (209)
+-.+.+..++...+++.|+|.|+|||||||+|+.|++.+|+.+++.++++++.+..++..+..+..++..|..+|++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~ 94 (261)
T PLN02459 15 DLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIF 94 (261)
T ss_pred hccccccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHH
Confidence 34455666776778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc----C-------------
Q 028388 87 KLLQKAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----Q------------- 146 (209)
Q Consensus 87 ~~i~~~~~~~---~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~----~------------- 146 (209)
.++.+.+... ...+||+||||++..|...|.. . ..++.+|+|+++.+++.+|+..|. .
T Consensus 95 ~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~-~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~ 172 (261)
T PLN02459 95 SLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEG-V-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKG 172 (261)
T ss_pred HHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHh-c-CCCCEEEEEECCHHHHHHHhhccccccccCcccccccccccc
Confidence 9999999763 3689999999999999999987 3 468999999999999999999981 0
Q ss_pred -----------------------CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 147 -----------------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 147 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.|.++.++.+.+|+..|.+...|+.++|...+.++.+|++.++++++++|.+.|..
T Consensus 173 ~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 173 EDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred ccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 46788899999999999999999999999999999999999999999999999865
No 4
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=1.5e-32 Score=197.18 Aligned_cols=177 Identities=31% Similarity=0.617 Sum_probs=161.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
+.|+|+|+|||||||+++.|++++|+.+++.+++++..+..++..+.....++..+..+++++...++...+......++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~ 82 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW 82 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence 46999999999999999999999999999999999999888888888888888899999999999999988876556789
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (209)
|+||||++..+...+... ....++.+|+|++|++++.+|+..| ++.++..+.+.+|+..|++...|+.++|...+
T Consensus 83 ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~ 160 (183)
T PRK14531 83 LLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQRG 160 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998877663 3456788999999999999999999 88889999999999999999999999999888
Q ss_pred cEEEEcCCCChHHHHHHHHHhc
Q 028388 179 KVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 179 ~~~~id~~~~~ee~~~~i~~~i 200 (209)
.++.+|++.+++++++.|.+.|
T Consensus 161 ~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 161 LLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 8999999999999999998775
No 5
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=1.6e-32 Score=203.09 Aligned_cols=190 Identities=63% Similarity=1.034 Sum_probs=169.3
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
.++.+..|++|+|.|+|||||||+|+.|++++|+.+++.++++++.+...+..+..+...+..+..++++....++...+
T Consensus 36 ~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l 115 (234)
T PLN02200 36 SSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEM 115 (234)
T ss_pred CCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 35556678999999999999999999999999999999999999998888888888888888899999999889888888
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY 173 (209)
Q Consensus 94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (209)
......++|+||||+...+...|.......|+++|+|+++++++.+|+..|..++.++..+.+.+++..|.+...++.++
T Consensus 116 ~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~ 195 (234)
T PLN02200 116 ESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDY 195 (234)
T ss_pred hcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76556789999999999998888774445799999999999999999999844567788899999999999999999999
Q ss_pred HhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
|...+.++.+|++.+++++++.|.+.+...
T Consensus 196 y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 196 YSKKGKLYTINAVGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred HHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 988888999999999999999999988663
No 6
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=5.2e-32 Score=195.84 Aligned_cols=184 Identities=34% Similarity=0.652 Sum_probs=165.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
..++|++|+|.|+|||||||+|+.|++++|+.+++.|++++.....++..+.....++..+...+++.+..++.+.+...
T Consensus 2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~ 81 (191)
T PRK14527 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM 81 (191)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999988878888888888888899999999999999988865
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
...++|+||||++..+...+..+ ....++.+|+|++|++++.+|+.+| ..+|.++..+.+.+|+..|.+...++.
T Consensus 82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~ 161 (191)
T PRK14527 82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV 161 (191)
T ss_pred CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 55689999999999998777653 3457888999999999999999999 456888889999999999999999999
Q ss_pred HHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
.+|.+.+.++.||++.++++++++|...|
T Consensus 162 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 162 DYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 99999889999999999999999998775
No 7
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=6.2e-32 Score=206.35 Aligned_cols=181 Identities=30% Similarity=0.592 Sum_probs=163.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 101 (209)
.|+|.|+|||||||+++.|++.||+.+++.|++++..+..++..+....+++..+..+|++++..++.+.+.... ..+|
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ 81 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF 81 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence 589999999999999999999999999999999999988889999999999999999999999999999887644 5789
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-c-------CCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-N-------QGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r-~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
|+||||++.+|...|..+ ....||++|+|++|++++++|+..| . ..|.++..+.+.+|+..|++...++
T Consensus 82 ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PL 161 (333)
T PRK13808 82 ILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPL 161 (333)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999999887653 4468999999999999999999987 1 1366778999999999999999999
Q ss_pred HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.++|.+.+.++.||++.+++++++.|...|...
T Consensus 162 l~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 162 VHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 999998888999999999999999999888653
No 8
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=2e-31 Score=191.51 Aligned_cols=178 Identities=29% Similarity=0.589 Sum_probs=162.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 100 (209)
+.|+|.|+|||||||+|+.|++.+|+++++.+++++..+..++..+.....++..+...+++....++.+.+.... ..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 4589999999999999999999999999999999999988888888888999999999999998888988887643 578
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
+|+||||++..+...+..+ ....++.+|+|++|++++.+|+..| ..++.++..+.+.+|+..|+....|+.++|.
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~ 161 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA 161 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999988764 2457999999999999999999999 5678889999999999999999999999999
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHh
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAV 199 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~ 199 (209)
..+.++.+|++.++++++..|.+.
T Consensus 162 ~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 162 AQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHh
Confidence 999999999999999999988764
No 9
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1.8e-31 Score=192.72 Aligned_cols=179 Identities=31% Similarity=0.602 Sum_probs=160.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 101 (209)
.|+|.|+|||||||+|+.|++++|+.+++.|+++++.+..++..+..+...+..+..++++.+..++...+.... +.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 589999999999999999999999999999999999988888888888888888999999999999998886543 7899
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
|+||||++..+...+..+ ....|+.+|+|++|++++.+|+..| ..+++++..+.+.+++..|+....++.++|.+
T Consensus 82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~ 161 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG 161 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887643 4567999999999999999999998 34678888899999999999999999899988
Q ss_pred cCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 177 KGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 177 ~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
.+.++.+|++.++++++++|.+.|.
T Consensus 162 ~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 162 QGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHh
Confidence 8888999999999999999998875
No 10
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=2e-31 Score=191.77 Aligned_cols=178 Identities=66% Similarity=1.105 Sum_probs=158.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 102 (209)
+|+|.|+|||||||+|+.|++++|+.+++.++++++.+..++..+.....++..+..++++....++...+....+.++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 48999999999999999999999999999999999998877888888888899999999999999999888765578899
Q ss_pred EeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388 103 IDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (209)
Q Consensus 103 ~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (209)
+||||++..+...|..+ ....|+++|+|++|++++.+|+..| ..++.++..+.+.+++..|.+...++.++|...+
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~ 160 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG 160 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999988877764 3357999999999999999999999 2255667888999999999999999999998877
Q ss_pred cEEEEcCCCChHHHHHHHHHhc
Q 028388 179 KVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 179 ~~~~id~~~~~ee~~~~i~~~i 200 (209)
.++.||++.+++++.++|.+.+
T Consensus 161 ~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 161 KVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 8899999999999999998765
No 11
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=3.7e-31 Score=192.88 Aligned_cols=178 Identities=26% Similarity=0.551 Sum_probs=158.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 102 (209)
.|+|.|+|||||||+++.|++++++.+++.++++++.+..++..+..+++++..+..+|+++...++.+.+......++|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i 81 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence 58999999999999999999999999999999999998888999999999999999999999999999999876678999
Q ss_pred EeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc---cC----------------------------CC
Q 028388 103 IDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR---NQ----------------------------GR 148 (209)
Q Consensus 103 ~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r---~~----------------------------~~ 148 (209)
+||||++..|...|... ....|+.+|+|++|.+++.+|+..| .. .|
T Consensus 82 LDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R 161 (223)
T PRK14529 82 LDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTR 161 (223)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccC
Confidence 99999999999987753 3467999999999999999999998 10 26
Q ss_pred CCCc-HHHHHHHHHHHHhh---chhHHHHHhh-----cCcEEEEcCCCChHHHHHHHHHhc
Q 028388 149 EDDN-VETIRKRFKVFLES---SLPVVQYYEA-----KGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 149 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
.+|. ++.+.+|+..|++. ..++.++|.. .+.++.+|++++++++++.|.+.+
T Consensus 162 ~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 162 ADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 6674 68999999999987 4467789985 678999999999999999998775
No 12
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=8.4e-31 Score=192.15 Aligned_cols=176 Identities=36% Similarity=0.695 Sum_probs=160.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeE
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKF 101 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~ 101 (209)
|+|.|+|||||||+|+.|++++|+.+++.++++++.+...+..+......+..+...+++++..++.+.+.... ..++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 78999999999999999999999999999999999988888889999999999999999999999999998632 6799
Q ss_pred EEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhcc-C----------------------------CCCCC
Q 028388 102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN-Q----------------------------GREDD 151 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~~~~~~R~~~r~-~----------------------------~~~~~ 151 (209)
|+||||++..+...|.. ... .++.+|+|++|.+++.+|+..|. . .|.++
T Consensus 82 ilDGfPrt~~Qa~~l~~-~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD 160 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDA-LLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD 160 (210)
T ss_pred EEeCCCCCHHHHHHHHH-HhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence 99999999999998887 444 68999999999999999999981 0 26778
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
..+.+.+|+..|++...++.++|...+.++.+|++.+++++++.|.+.|
T Consensus 161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 8999999999999999999999999889999999999999999998876
No 13
>PRK14526 adenylate kinase; Provisional
Probab=99.98 E-value=2.8e-30 Score=187.95 Aligned_cols=179 Identities=30% Similarity=0.564 Sum_probs=161.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF 101 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 101 (209)
.|+|.|+|||||||+++.|++.+++.+++.|+++++.+..++..+..+..++..+...|++...+++.+.+.... ..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 488999999999999999999999999999999999988888899999999999999999999999999997643 6789
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c----------------------------CCCCCCc
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------QGREDDN 152 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~----------------------------~~~~~~~ 152 (209)
|+||||++..+...|.. ... ...+|+|.+|++++.+|+..| . .+|.++.
T Consensus 82 ilDGfPR~~~Qa~~l~~-~~~-~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 82 ILDGFPRNINQAKALDK-FLP-NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred EEECCCCCHHHHHHHHH-hcC-CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 99999999999999887 322 246888999999999999998 1 1478889
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.+.+.+|+..|++...|+.++|...+.++.+|++.++++++++|.+.|.++
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK 210 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999999999999999999889999999999999999999998764
No 14
>PRK02496 adk adenylate kinase; Provisional
Probab=99.98 E-value=8.1e-30 Score=183.48 Aligned_cols=178 Identities=33% Similarity=0.633 Sum_probs=159.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 100 (209)
+.|+|.|+|||||||+++.|++.+|+.+++.|++++..+..++..+.....++..+...+++....++.+.+.... ..+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 5689999999999999999999999999999999999988888888888888989999999999999999887543 568
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (209)
+|+||||++..+...+..+ ....|+++|+|++|++++.+|+..| ++.++..+.+.+++..|.+...++.++|...
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~ 159 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDR 159 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887776653 2346899999999999999999999 7778888999999999999999999999888
Q ss_pred CcEEEEcCCCChHHHHHHHHHhcC
Q 028388 178 GKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 178 ~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
+.++.+|++.+++++.++|.+.|.
T Consensus 160 ~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 160 QKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC
Confidence 889999999999999999998874
No 15
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.98 E-value=4e-30 Score=189.21 Aligned_cols=181 Identities=36% Similarity=0.696 Sum_probs=162.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 100 (209)
+.|+|.|+|||||||+|+.|++++|+.+++.++++++.+...+..+..+...+..+..++++....++.+.+.... ..+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 3599999999999999999999999999999999999988888888989999999999999999999999987644 458
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028388 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-----------------------------~~~ 148 (209)
+|+||||++..+...+.+. ....++.+|+|++|.+++.+|+..|. ..|
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 9999999999998888542 34578899999999999999999981 145
Q ss_pred CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.++..+.+.+|+..|+.+..++.++|...+.++.+|++.+++++++.|.+.|..
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 778899999999999999999999999988899999999999999999988764
No 16
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.97 E-value=2.2e-29 Score=185.23 Aligned_cols=180 Identities=23% Similarity=0.487 Sum_probs=160.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-- 95 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 95 (209)
...|+.|+|.|+|||||||+|+.|++.+|+++++.|+++++.+...+..+..+.+++..+...+++++..++.+.+..
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence 345778999999999999999999999999999999999999888888999999999999999999999999999976
Q ss_pred c-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------
Q 028388 96 S-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----------------------------- 145 (209)
Q Consensus 96 ~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~----------------------------- 145 (209)
. ...++|+||||++..+...+.. . ..|+++|+|+++.+++.+|+..|.
T Consensus 83 ~~~~~g~iLDGfPRt~~Qa~~l~~-~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~ 160 (229)
T PTZ00088 83 DDCFKGFILDGFPRNLKQCKELGK-I-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPAD 160 (229)
T ss_pred cccCceEEEecCCCCHHHHHHHHh-c-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCc
Confidence 2 2688999999999999988876 3 579999999999999999999871
Q ss_pred ----------CCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCc-EEEE---cCCCChHHHHHHHHHh
Q 028388 146 ----------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK-VRKI---DAAKPVAEVFDAVKAV 199 (209)
Q Consensus 146 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~ee~~~~i~~~ 199 (209)
..|.++.++.+.+|+..|++...++.++|...+. ++.+ |++.+++++++.|.+.
T Consensus 161 c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 161 CEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred ccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 0366778899999999999999999999999987 8777 7889999999888754
No 17
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.97 E-value=1.5e-28 Score=177.58 Aligned_cols=181 Identities=48% Similarity=0.883 Sum_probs=155.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~ 97 (209)
+.++|+|.|+|||||||+|+.|++.+|+.+++.|++++..+......+..+...+..+...+...+...+...+... .
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence 35689999999999999999999999999999999999887666666777777777788888888777777776542 3
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
+.++|+||||+...+...+.. ....|+++|+|++|++++.+|+.+| ...+.++..+.+.+++..|++...++.++|.
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~-~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~ 160 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFER-RIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE 160 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 789999999999988888876 5667999999999999999999988 2457777888999999999999889888888
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
..+.++.+|++.+++++.+.|...+.
T Consensus 161 ~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 161 TKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 77788899999999999999998875
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.97 E-value=4.4e-28 Score=178.39 Aligned_cols=176 Identities=35% Similarity=0.652 Sum_probs=150.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH-----HcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
.|+|.|+|||||||+++.|++++|+.+++.+++++... ..+..++. ....+..+...+++....++...+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~-- 81 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD-- 81 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc--
Confidence 68999999999999999999999999999999999875 22334443 45567788889999888888888753
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c----------------------------CCC
Q 028388 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------QGR 148 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~----------------------------~~~ 148 (209)
..++|+||||++..+...+.. ...++++|+|++|.+++.+|+.+| . ..|
T Consensus 82 ~~~~IldG~pr~~~q~~~l~~--~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R 159 (215)
T PRK14530 82 ADGFVLDGYPRNLEQAEYLES--ITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQR 159 (215)
T ss_pred CCCEEEcCCCCCHHHHHHHHH--hcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCC
Confidence 468999999999999888775 246899999999999999999987 1 135
Q ss_pred CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.++..+.+.+|+..|.+...++.++|...+.++.+|++.+++++++.|.+.|.+.
T Consensus 160 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 160 DDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA 214 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 6678899999999999999999999998888999999999999999999988653
No 19
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.96 E-value=9.4e-28 Score=174.28 Aligned_cols=167 Identities=41% Similarity=0.762 Sum_probs=149.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCeEE
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFL 102 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~i 102 (209)
|+|+|+|||||||+|+.|++++|+.+++.++++++.+......+..+...+..+...+++.+..++...+... .+.++|
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~v 81 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFI 81 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEE
Confidence 8999999999999999999999999999999999998888888888888888888899999999999988754 267899
Q ss_pred EeCCCCCHHHHHHHHHhcCC---CCcEEEEEecCHHHHHHHHhhcc---------------------CCCCCCcHHHHHH
Q 028388 103 IDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNRN---------------------QGREDDNVETIRK 158 (209)
Q Consensus 103 ~dg~~~~~~~~~~~~~~~~~---~~~~~i~L~~~~~~~~~R~~~r~---------------------~~~~~~~~~~~~~ 158 (209)
+||||++..+...|.. ... .++++|+|++|++++.+|+..|. ..+.++..+.+.+
T Consensus 82 ldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~ 160 (194)
T cd01428 82 LDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKK 160 (194)
T ss_pred EeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHH
Confidence 9999999999998888 443 78999999999999999999992 1366788899999
Q ss_pred HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHH
Q 028388 159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE 191 (209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee 191 (209)
|+..|.+...++.++|...+.++.+|++.++++
T Consensus 161 R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~ 193 (194)
T cd01428 161 RLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDE 193 (194)
T ss_pred HHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCc
Confidence 999999999999999999899999999888765
No 20
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=9.1e-27 Score=164.99 Aligned_cols=172 Identities=34% Similarity=0.657 Sum_probs=157.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 100 (209)
+.|+|.|+|||||||+|+.|+++++++++|.+++++..+...++.+.....++..+..++++....++...+.... ..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999998765 237
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
+|+||||+...+...+.+. .....+.++.++++.+.+..|+..| . |.++..+.+.+|+..|.+...|+..+|.
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r--~~r~dd~~~~~~~R~~~y~~~~~pli~~y~- 157 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGR--RVREDDNEETVKKRLKVYHEQTAPLIEYYS- 157 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCc--cccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence 9999999999999988875 2468899999999999999999998 4 7889999999999999999999988887
Q ss_pred cCcEEEEcCCCChHHHHHHHHHhc
Q 028388 177 KGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 177 ~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
+.+|+..+++++.+.+.+.+
T Consensus 158 ----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 158 ----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ----eeccCCCCHHHHHHHHHHhh
Confidence 78999999999999988765
No 21
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.96 E-value=4.3e-27 Score=164.04 Aligned_cols=146 Identities=44% Similarity=0.850 Sum_probs=130.1
Q ss_pred EEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCeEEEe
Q 028388 26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID 104 (209)
Q Consensus 26 i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~d 104 (209)
|.|+|||||||+|+.|++++|+.+|+.++++++.+...+..+..+.+++..+..+|++++..++...+... ...++|+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999876 58999999
Q ss_pred CCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388 105 GFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178 (209)
Q Consensus 105 g~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (209)
|||++..+...|.+. ....|+.+|+|++|.+++.+|+.. +..+.+.+|+..|+++..++.++|.+.+
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999988762 467889999999999999999984 6778999999999999999999998765
No 22
>PLN02842 nucleotide kinase
Probab=99.95 E-value=9.5e-27 Score=185.97 Aligned_cols=179 Identities=30% Similarity=0.642 Sum_probs=159.2
Q ss_pred EEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeEE
Q 028388 25 FVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFL 102 (209)
Q Consensus 25 ~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~i 102 (209)
+|.|+|||||||+|+.|++++++.+++.+++++..+..++..+..+++++..+...+++.+..++.+.+.... ..++|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 4899999999999999999999999999999999988899999999999999999999999999999987542 56799
Q ss_pred EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c------------------------CCCCCCcHHHHH
Q 028388 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N------------------------QGREDDNVETIR 157 (209)
Q Consensus 103 ~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~------------------------~~~~~~~~~~~~ 157 (209)
+||||++..+...+.. ....|+++|+|++|++++.+|+.+| . ..|.++..+.+.
T Consensus 81 LDGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 81 LDGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EeCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 9999999999888887 6678999999999999999999887 1 146688899999
Q ss_pred HHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhh
Q 028388 158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206 (209)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~ 206 (209)
+|+..|++...++..+|.. .++.+|++.++++++++|.+.|......
T Consensus 160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~~ 206 (505)
T PLN02842 160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQKD 206 (505)
T ss_pred HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888863 5788999999999999999988765543
No 23
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=4.4e-23 Score=149.02 Aligned_cols=183 Identities=39% Similarity=0.659 Sum_probs=165.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN 98 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 98 (209)
++..+++.|+|||||+|+|..|++.++..+++++|++++.+...++.+....+++..+...+++++..++...+... -+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999988777777765 37
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----c-------------------------CCCC
Q 028388 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----N-------------------------QGRE 149 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r----~-------------------------~~~~ 149 (209)
.++++||||++..+...+.+ ....++.+|.|++|.+.+.+|+..| . ..|.
T Consensus 94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~ 172 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE 172 (235)
T ss_pred cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence 99999999999998888887 7889999999999999999999998 1 1456
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
+|.++.+..|+..|++...++.++|...+.+..+++.. .++++..+...+....
T Consensus 173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~ 226 (235)
T KOG3078|consen 173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV 226 (235)
T ss_pred cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence 78889999999999999999999999999888888876 8999999998887654
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.86 E-value=1.9e-19 Score=129.56 Aligned_cols=170 Identities=24% Similarity=0.338 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCc-----hHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
++|+|+|+|||||||+++ +++++|+++++.||++++.+.. +.. ++........ .+.......++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence 589999999999999987 7789999999999999998643 211 2332222221 12223333444445554
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhhchhHHHH
Q 028388 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLESSLPVVQY 173 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 173 (209)
..+..||+||+ +...+...+.. ....+..+|+++||++++.+|+..| ++..+ ..+.+.++...... .+..+.
T Consensus 78 ~~~~~vvidg~-r~~~e~~~~~~-~~~~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~~~q~~--~~~~~~ 151 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEYFRK-EFPEDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERDERELS--WGIGEV 151 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHHHHH-hCCcccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHHHHHhc--cCHHHH
Confidence 45788999998 67777777766 3334668999999999999999988 54432 34555555433211 112223
Q ss_pred HhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
+. ..+ ++++++.+.+++.+++.+++...
T Consensus 152 ~~-~ad-~vI~N~~~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 152 IA-LAD-YMIVNDSTLEEFRARVRKLLERI 179 (184)
T ss_pred HH-hcC-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 32 233 45556669999999999887643
No 25
>PRK13973 thymidylate kinase; Provisional
Probab=99.85 E-value=2.9e-19 Score=131.19 Aligned_cols=178 Identities=22% Similarity=0.302 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecH--------hHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTI 86 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (209)
++++|+|+|++||||||+++.|++.| |..++.. +..+++.+... ..........+... ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 36899999999999999999999999 7766654 56666654431 11111111111111 0112223
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-C---CC
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-Q---GR 148 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~-~---~~ 148 (209)
..+..++. .+..||+|+|..+ ..+...+... ....||++|||++|++++.+|+.+|. . .+
T Consensus 80 ~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~ 157 (213)
T PRK13973 80 EVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDR 157 (213)
T ss_pred HHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCc
Confidence 33444444 4788999987522 1233333321 34679999999999999999999881 1 12
Q ss_pred CCC-cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388 149 EDD-NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA 207 (209)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~ 207 (209)
.+. ..+.+.+....|.+. .+.+ ...+.+||++.+++++.++|.+.+.....+|
T Consensus 158 ~e~~~~~~~~~~~~~y~~l----~~~~--~~~~~~Ida~~~~e~V~~~I~~~i~~~~~~~ 211 (213)
T PRK13973 158 FEKEDLAFHEKRREAFLQI----AAQE--PERCVVIDATASPEAVAAEIWAAVDQRLLEA 211 (213)
T ss_pred hhhchHHHHHHHHHHHHHH----HHhC--CCcEEEEcCCCCHHHHHHHHHHHHHHHHhhc
Confidence 221 223333333333331 1211 2357889999999999999999987755543
No 26
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.82 E-value=4.6e-18 Score=122.93 Aligned_cols=175 Identities=21% Similarity=0.321 Sum_probs=109.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCc---eecHhHHHHHHHHcCCchHHHHHHHHHcC-CCCCH-HHH-------HH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPS-EVT-------IK 87 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-------~~ 87 (209)
++++|+|+|+.||||||+++.|++.+... ++-. ++ +.++..+..+++.+.++ ..... ... .+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----rE--P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----RE--PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----eC--CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999433 3322 11 44566777777777654 22222 211 23
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 88 LLQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 88 ~i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
.+.+.+.. ..+..||+|.|..+. .+...+.+. ....||+++||++|+++..+|+.+| +...+
T Consensus 76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r--~~~~~ 153 (208)
T COG0125 76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKR--GELRD 153 (208)
T ss_pred HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhc--CCccc
Confidence 33333332 237899999876542 333333332 3348999999999999999999998 32211
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcC--cEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKG--KVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
..+... ..+++.++..+..+.... .++++|++.+++++.+.|.+.+.....
T Consensus 154 r~E~~~---~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 154 RFEKED---DEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred hhhhHH---HHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence 111111 122222222222222222 589999999999999999988876543
No 27
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.81 E-value=1.4e-17 Score=112.86 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
++|.|.|+|||||||+|+.|++++|+++++.|.+++++.....-.-..+..+-.....+..+. .--+..+. ....+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~i--D~rq~e~a--~~~nv 76 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEI--DRRQKELA--KEGNV 76 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHH--HHHHHHHH--HcCCe
Confidence 579999999999999999999999999999999999996653222233444433333222221 11222222 25789
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh-hcC--
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE-AKG-- 178 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 178 (209)
|++|.- ..|.- ...+++.|||.+|.++..+|+.+|+..-..+.......|=. ...+...+.|. ...
T Consensus 77 VlegrL------A~Wi~--k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~---se~kRY~~~YgIDidDl 145 (179)
T COG1102 77 VLEGRL------AGWIV--REYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREE---SEKKRYKKIYGIDIDDL 145 (179)
T ss_pred EEhhhh------HHHHh--ccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHhCCCCccc
Confidence 999752 23332 25689999999999999999999832222222222221111 11111122232 111
Q ss_pred --cEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 179 --KVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 179 --~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
.-+++|+ .-+++++..-+...+..
T Consensus 146 SiyDLVinTs~~~~~~v~~il~~aid~ 172 (179)
T COG1102 146 SIYDLVINTSKWDPEEVFLILLDAIDA 172 (179)
T ss_pred eeeEEEEecccCCHHHHHHHHHHHHHh
Confidence 1145555 55888888887777654
No 28
>PRK13975 thymidylate kinase; Provisional
Probab=99.81 E-value=5.4e-18 Score=123.20 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH----------HHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IKLLQ 90 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~ 90 (209)
+++|+|+|++||||||+++.|+++++..+... +.+...+..+++++......+.... ...++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~ 73 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIE 73 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998533211 0111223333333322111111000 11122
Q ss_pred HHHHhcCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHH
Q 028388 91 KAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKR 159 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~ 159 (209)
..+. ...+|+|+|..+- .+...+.. ....|+++|||++|++++.+|+..| +++......+.++
T Consensus 74 ~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~-~~~~pd~vi~L~~~~e~~~~Rl~~r--~~~~~~~~~~~~~ 147 (196)
T PRK13975 74 EDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINR-YAKKPDLVFLLDVDIEEALKRMETR--DKEIFEKKEFLKK 147 (196)
T ss_pred HHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHhcc--CccccchHHHHHH
Confidence 2222 3679999875431 11112222 3457999999999999999999988 4432333333333
Q ss_pred HHHHHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcch
Q 028388 160 FKVFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~ 204 (209)
+...+..... ...+.....++++|++ .+++++.++|.+.|....
T Consensus 148 ~~~~y~~~~~-~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~ 192 (196)
T PRK13975 148 VQEKYLELAN-NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI 192 (196)
T ss_pred HHHHHHHHHh-hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3332222211 1112223357889984 799999999999886654
No 29
>PRK06762 hypothetical protein; Provisional
Probab=99.81 E-value=9.4e-18 Score=118.77 Aligned_cols=157 Identities=16% Similarity=0.226 Sum_probs=98.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (209)
|++|+|+|+|||||||+|+.|++.+ ++.+++.|.+.... ..... .......+.+...+...+. .+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l-~~~~~----------~~~~~~~~~~~~~~~~~~~--~g 68 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM-LRVKD----------GPGNLSIDLIEQLVRYGLG--HC 68 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh-ccccC----------CCCCcCHHHHHHHHHHHHh--CC
Confidence 6899999999999999999999999 56677875544333 21100 0011222333333333333 46
Q ss_pred CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCC-CCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
..+|+|+..........+..+ ....+..+|||++|.+++.+|...| ++ .....+.+..++... ..+ .
T Consensus 69 ~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R--~~~~~~~~~~l~~~~~~~----~~~----~ 138 (166)
T PRK06762 69 EFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR--PKSHEFGEDDMRRWWNPH----DTL----G 138 (166)
T ss_pred CEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc--cccccCCHHHHHHHHhhc----CCc----C
Confidence 889999875444333334433 3334678999999999999999988 33 123445554443221 111 1
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
....++++++.++++++++|...+.
T Consensus 139 -~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 139 -VIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred -CCCeEEecCCCCHHHHHHHHHHHhc
Confidence 1235667778899999999988763
No 30
>PRK04040 adenylate kinase; Provisional
Probab=99.81 E-value=2.4e-18 Score=123.54 Aligned_cols=172 Identities=15% Similarity=0.227 Sum_probs=107.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCc--hHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSE--NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE- 95 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 95 (209)
|++|+|+|+|||||||+++.|++++ ++.+++.++++......... .....+ .........+.......+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r----~l~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMR----KLPPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHh----hCChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 89999999998877554321 112222 11111122223334444333
Q ss_pred cCCCeEEEeCCCCCHH--------HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhh
Q 028388 96 SGNDKFLIDGFPRNEE--------NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLES 166 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~--------~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
..+..+|+||+..-.. ....+ ....|+.+|++.++++++.+|+... .++|..+..+.+..++......
T Consensus 78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~ 154 (188)
T PRK04040 78 AGEGPVIVDTHATIKTPAGYLPGLPEWVL---EELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAA 154 (188)
T ss_pred hcCCCEEEeeeeeeccCCCCcCCCCHHHH---hhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHH
Confidence 2356699998642111 11222 3458999999999999998888853 2367777777777665443332
Q ss_pred chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
... +..+......+++|.+..+++.++++.+.|
T Consensus 155 a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 155 AMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 111 111112223444555545999999998876
No 31
>PLN02924 thymidylate kinase
Probab=99.81 E-value=6.6e-18 Score=123.93 Aligned_cols=170 Identities=22% Similarity=0.316 Sum_probs=102.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-HH----------HH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT----------IK 87 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~ 87 (209)
+++++|+|+|++||||||+++.|++.++...+.. ..+++. ..++..+..+++++......... .. ..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep-~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~ 91 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFP-DRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS 91 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999996443322 111111 11344555555555432222111 11 12
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028388 88 LLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI 156 (209)
Q Consensus 88 ~i~~~~~~~~~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~ 156 (209)
.+..++. .+..||+|.|..+- ++...+.. ..+.||++|||++|++++.+|...+ +...+. ..+
T Consensus 92 ~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~-~~~~PDlvi~Ld~~~~~a~~R~~~~--~~~~E~-~~~ 165 (220)
T PLN02924 92 LMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEV-GLPAPDLVLYLDISPEEAAERGGYG--GERYEK-LEF 165 (220)
T ss_pred HHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC--cccccc-HHH
Confidence 2333333 48899999987531 22222232 4568999999999999999996533 111111 222
Q ss_pred HHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.+++. ..+..+.. ..+.+||++.+++++.++|.+.+....
T Consensus 166 ~~rv~-------~~Y~~la~-~~~~vIDa~~sieeV~~~I~~~I~~~l 205 (220)
T PLN02924 166 QKKVA-------KRFQTLRD-SSWKIIDASQSIEEVEKKIREVVLDTV 205 (220)
T ss_pred HHHHH-------HHHHHHhh-cCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 22222 22222222 357888999999999999988886543
No 32
>PRK03839 putative kinase; Provisional
Probab=99.80 E-value=2.7e-18 Score=123.11 Aligned_cols=151 Identities=19% Similarity=0.345 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 100 (209)
+.|+|.|+|||||||+++.|++++++++++.|++++.. . .+..... ..+.....++..+.. ..+..
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~--~---~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK--G---IGEEKDD--------EMEIDFDKLAYFIEEEFKEKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc--C---CcccCCh--------hhhcCHHHHHHHHHHhccCCC
Confidence 36999999999999999999999999999999987653 1 1110000 001112233333322 12567
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH-HHHHhhchhHHHHHhhcCc
Q 028388 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF-KVFLESSLPVVQYYEAKGK 179 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 179 (209)
+|+||+.. ....++++|||+++++++.+|+..| +.. .. .+.... ..+.+ ....+.+.....
T Consensus 68 vIidG~~~-----------~l~~~~~vi~L~~~~~~~~~Rl~~R--~~~--~~-~~~~~~~~~~~~--~~~~~~~~~r~~ 129 (180)
T PRK03839 68 VVLDGHLS-----------HLLPVDYVIVLRAHPKIIKERLKER--GYS--KK-KILENVEAELVD--VCLCEALEEKEK 129 (180)
T ss_pred EEEEeccc-----------cccCCCEEEEEECCHHHHHHHHHHc--CCC--HH-HHHHHHHHHHHH--HHHHHHHHhcCC
Confidence 99999642 1235789999999999999999987 321 11 111111 11111 112244555667
Q ss_pred EEEEcCC-CChHHHHHHHHHhcCcc
Q 028388 180 VRKIDAA-KPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 180 ~~~id~~-~~~ee~~~~i~~~i~~~ 203 (209)
++.+|++ .++++++++|.+.+...
T Consensus 130 ~~~Id~~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 130 VIEVDTTGKTPEEVVEEILELIKSG 154 (180)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC
Confidence 8899985 69999999999888654
No 33
>PRK13974 thymidylate kinase; Provisional
Probab=99.80 E-value=4.3e-18 Score=124.92 Aligned_cols=174 Identities=21% Similarity=0.305 Sum_probs=115.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHHHHHHcCCchHHHHHHHHHcC--CCCCHHHHH---------H
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTI---------K 87 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~ 87 (209)
+.+|+|+|++||||||+++.|++.+...... .........+.++..+..+++++... ...++.... .
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 6799999999999999999999988522110 00111111133566777777777522 222222221 1
Q ss_pred ----HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028388 88 ----LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (209)
Q Consensus 88 ----~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~ 149 (209)
.+...+. .+..||.|.|..+ ..+...+... ....|+++|||++|++++.+|+..| .
T Consensus 83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R--~-- 156 (212)
T PRK13974 83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR--K-- 156 (212)
T ss_pred HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--c--
Confidence 1222222 3678888865333 1223333332 3457999999999999999999876 2
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
++ .+.++...|.+...+.+..+...+.+..+|++.+++++.++|.+.|...
T Consensus 157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN 207 (212)
T ss_pred cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 22 3455666788888888888888888999999999999999999888754
No 34
>PRK06217 hypothetical protein; Validated
Probab=99.79 E-value=1.5e-17 Score=119.50 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
+.|+|.|+|||||||+++.|++.+|+++++.|+++... .+..+. ...+.+.....+...+. .+..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~ 67 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR--PREGW 67 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh--cCCCE
Confidence 56999999999999999999999999999999887642 111110 12233444444454543 24679
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc---CCC---CCCc----HHHHHHHHHHHHh------
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN---QGR---EDDN----VETIRKRFKVFLE------ 165 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~---~~~---~~~~----~~~~~~~~~~~~~------ 165 (209)
|+||++... ... ....++.+|||++|.+++.+|+..|. .++ .... ...+.++...|..
T Consensus 68 vi~G~~~~~--~~~----~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 141 (183)
T PRK06217 68 VLSGSALGW--GDP----LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGR 141 (183)
T ss_pred EEEccHHHH--HHH----HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcc
Confidence 999986432 111 12347889999999999999999982 122 1111 1223333333332
Q ss_pred hchhHHHHHhhc-CcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 166 SSLPVVQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.......++... ..++.+++..++++..+.|.+.|...
T Consensus 142 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~~ 180 (183)
T PRK06217 142 SLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLASA 180 (183)
T ss_pred cHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhcc
Confidence 111112222322 46788899899999999999998654
No 35
>PRK13949 shikimate kinase; Provisional
Probab=99.79 E-value=3.9e-17 Score=115.51 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=99.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 102 (209)
.|+|.|+|||||||+++.|++.+++.+++.|.++..... ......+. ..+.....+....++.+ +.. ....||
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~--~~~~~~~~---~~g~~~fr~~e~~~l~~-l~~-~~~~vi 75 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH--KTVGDIFA---ERGEAVFRELERNMLHE-VAE-FEDVVI 75 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC--ccHHHHHH---HhCHHHHHHHHHHHHHH-HHh-CCCEEE
Confidence 599999999999999999999999999999988765521 11111111 11222223333445554 322 233444
Q ss_pred EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhhchhHHHHHhhc
Q 028388 103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN---VETIRKRFKVFLESSLPVVQYYEAK 177 (209)
Q Consensus 103 ~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (209)
..| .+........+.+ .+++|||++|++++.+|+..+.+.|+... .+.+.+.+...++...++ |..
T Consensus 76 s~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~---Y~~- 146 (169)
T PRK13949 76 STGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPF---YRQ- 146 (169)
T ss_pred EcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHH---HHh-
Confidence 454 4455555656555 46899999999999999985312344321 233444444444544444 444
Q ss_pred CcEEEEcC-CCChHHHHHHHHHh
Q 028388 178 GKVRKIDA-AKPVAEVFDAVKAV 199 (209)
Q Consensus 178 ~~~~~id~-~~~~ee~~~~i~~~ 199 (209)
.+ +.+|+ +.+++++++.|.+.
T Consensus 147 ad-~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 147 AK-IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred CC-EEEECCCCCHHHHHHHHHHh
Confidence 33 45665 55889999888764
No 36
>PRK08356 hypothetical protein; Provisional
Probab=99.79 E-value=7.3e-18 Score=122.26 Aligned_cols=170 Identities=20% Similarity=0.261 Sum_probs=102.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC-Cch------HHH----HHHHHHcCCCCC----HHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SEN------GTM----IQNMIKEGKIVP----SEV 84 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~-~~~------~~~----~~~~~~~~~~~~----~~~ 84 (209)
..++|+|+|+|||||||+|+.|+ ++|+.+++.++.++...... ..+ ... ...++..+...+ .+.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 34789999999999999999996 58999999988554332221 000 000 011222222222 244
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC----cHHHHHHHH
Q 028388 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD----NVETIRKRF 160 (209)
Q Consensus 85 ~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~----~~~~~~~~~ 160 (209)
+...+.+.+. ....+++||+ ++..+...+.. . ...+||+++|++++.+|+..| +.... ..+.+.+..
T Consensus 83 ~~~~~~~~~~--~~~~ividG~-r~~~q~~~l~~-~---~~~vi~l~~~~~~~~~Rl~~R--~~~~~~~~~~~e~~~~~~ 153 (195)
T PRK08356 83 LIRLAVDKKR--NCKNIAIDGV-RSRGEVEAIKR-M---GGKVIYVEAKPEIRFERLRRR--GAEKDKGIKSFEDFLKFD 153 (195)
T ss_pred HHHHHHHHhc--cCCeEEEcCc-CCHHHHHHHHh-c---CCEEEEEECCHHHHHHHHHhc--CCccccccccHHHHHHHH
Confidence 4444444443 2346999999 99998888776 2 247999999999999999988 33211 233332221
Q ss_pred HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
. .+...... ..+....+++++| +.+++++.++|.++++.
T Consensus 154 ~-~~~~l~~~-~~~~~~aD~vI~N-~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 154 E-WEEKLYHT-TKLKDKADFVIVN-EGTLEELRKKVEEILRE 192 (195)
T ss_pred H-HHHHhhhh-hhHHHhCcEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 11110011 1122334555544 56999999999988764
No 37
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.78 E-value=1.6e-17 Score=115.16 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND 99 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (209)
.+.|+++|++||||||+.+.||+.|++++++.|.++.+.. +..+.+.+ ..|+......-..++.......
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--- 72 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEED--- 72 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence 3569999999999999999999999999999999998863 22233333 2244444445566666666632
Q ss_pred eEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 100 ~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
..|+. |.....+.+..+.. ...+|||++|.+++++|+..+ ..||.-...+-.+.+....+...++ |++
T Consensus 73 ~~ViaTGGG~v~~~enr~~l~~-----~g~vv~L~~~~e~l~~Rl~~~-~~RPll~~~~~~~~l~~L~~~R~~~---Y~e 143 (172)
T COG0703 73 NAVIATGGGAVLSEENRNLLKK-----RGIVVYLDAPFETLYERLQRD-RKRPLLQTEDPREELEELLEERQPL---YRE 143 (172)
T ss_pred CeEEECCCccccCHHHHHHHHh-----CCeEEEEeCCHHHHHHHhccc-cCCCcccCCChHHHHHHHHHHHHHH---HHH
Confidence 24433 35555666666665 227999999999999999944 1333222222233344444444444 444
Q ss_pred cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 177 KGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 177 ~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.+ .++++++...++++++|...+..
T Consensus 144 ~a-~~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 144 VA-DFIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred hC-cEEecCCCCcHHHHHHHHHHHHH
Confidence 44 45666655558899998887754
No 38
>PRK13948 shikimate kinase; Provisional
Probab=99.78 E-value=3e-17 Score=116.84 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=101.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+..|..|+++|++||||||+++.|++.+++.+++.|..+.+.. +......+. ..++....+....++...+..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~--g~si~~if~---~~Ge~~fR~~E~~~l~~l~~~-- 79 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT--GKSIPEIFR---HLGEAYFRRCEAEVVRRLTRL-- 79 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH--hCCHHHHHH---HhCHHHHHHHHHHHHHHHHhc--
Confidence 3457899999999999999999999999999999988777653 122222221 223323233334445554432
Q ss_pred CCeEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388 98 NDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (209)
Q Consensus 98 ~~~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (209)
...|+. |.+........+.+ ...+|||+++++++.+|+..+ .|+......-.+++....+...++ |
T Consensus 80 -~~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~---Y 148 (182)
T PRK13948 80 -DYAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPV---Y 148 (182)
T ss_pred -CCeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHH---H
Confidence 233443 34444555555444 246899999999999999654 344321111123444444444444 4
Q ss_pred hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.. ..+.+...+.+++++++.|.+.+..
T Consensus 149 ~~-a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 149 RQ-ATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred Hh-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence 33 3344433467999999999888754
No 39
>PRK08233 hypothetical protein; Provisional
Probab=99.78 E-value=9.9e-18 Score=120.40 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=97.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC---CHHHHHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQKAMEE 95 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~ 95 (209)
++++|+|.|+|||||||+|+.|++.++. .++..|.+.... .......+...+... ..+.+...+...+..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN------CPEDICKWIDKGANYSEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc------CchhhhhhhhccCChhhhhhHHHHHHHHHHHcC
Confidence 4689999999999999999999999963 333332221110 001112222222221 112223333333322
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHH-
Q 028388 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY- 174 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (209)
.....+|+|+ +....... +. ..+|++|||++|++++.+|+.+| ...+...+.+.+++..|.....+.+..+
T Consensus 76 ~~~~~vivd~-~~~~~~~~-~~----~~~d~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 147 (182)
T PRK08233 76 SNVDYIIVDY-PFAYLNSE-MR----QFIDVTIFIDTPLDIAMARRILR--DFKEDTGNEIHNDLKHYLNYARPLYLEAL 147 (182)
T ss_pred CCceEEEEee-ehhhccHH-HH----HHcCEEEEEcCCHHHHHHHHHHH--HhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence 1124455665 32211111 11 23789999999999999998877 2211222345566666766666654322
Q ss_pred hh--cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 175 EA--KGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 175 ~~--~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.. ....+++|++.+.+++.++|...+.+
T Consensus 148 ~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 148 HTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred hcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 11 13457799999999999999988765
No 40
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.77 E-value=5.5e-18 Score=131.01 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=105.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (209)
+.+|++.|+|||||||+|+.|++++ ++.+++.|++. ..+......+.. .+...............+...+. .+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~ 76 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLR-QSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK 76 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHH-HHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence 4689999999999999999999999 89999996654 433222111100 00000000001122233333333 468
Q ss_pred eEEEeCCCCCHHHHHHHHHh-cCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHH---HHHHHHHhhchhHHHHH
Q 028388 100 KFLIDGFPRNEENRAAFEAV-TKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIR---KRFKVFLESSLPVVQYY 174 (209)
Q Consensus 100 ~~i~dg~~~~~~~~~~~~~~-~~~~~~-~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 174 (209)
.+|+|+++....+...+..+ ...... .+|+|++|.+++.+|+..| +....+.+.+. +++..+.....|++..+
T Consensus 77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~ 154 (300)
T PHA02530 77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTAD 154 (300)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceeccC
Confidence 89999999888887776653 222222 3799999999999999999 54445555555 67777777777776666
Q ss_pred hhcCcEEEEcCCCChHH
Q 028388 175 EAKGKVRKIDAAKPVAE 191 (209)
Q Consensus 175 ~~~~~~~~id~~~~~ee 191 (209)
.....++.+|.+.++.+
T Consensus 155 ~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAK 171 (300)
T ss_pred CCCCCEEEEECCCcCcC
Confidence 55456778887666543
No 41
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.76 E-value=3.1e-17 Score=112.62 Aligned_cols=153 Identities=18% Similarity=0.339 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
|+|+|+|.||+||||+|..|+ .+|+.+++..++..+. +.-.+ ..+ ......+..+.+...++..+. ....
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~---~~~~~--~de-~r~s~~vD~d~~~~~le~~~~---~~~~ 70 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN---GLYTE--YDE-LRKSVIVDVDKLRKRLEELLR---EGSG 70 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc---CCeec--cCC-ccceEEeeHHHHHHHHHHHhc---cCCe
Confidence 579999999999999999999 9999999998877654 11000 000 000112233444555555542 4778
Q ss_pred EEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHHHHHHHhhchhHHHHHhhcCc
Q 028388 102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKRFKVFLESSLPVVQYYEAKGK 179 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (209)
|+|++. . +.. .+|++|.|.++|+++.+|+.+| |-+... .+++...+..- -+.+..+....
T Consensus 71 Ivd~H~---------~--hl~~~~dlVvVLR~~p~~L~~RLk~R--Gy~~eKI~ENveAEi~~v-----i~~EA~E~~~~ 132 (180)
T COG1936 71 IVDSHL---------S--HLLPDCDLVVVLRADPEVLYERLKGR--GYSEEKILENVEAEILDV-----ILIEAVERFEA 132 (180)
T ss_pred Eeechh---------h--hcCCCCCEEEEEcCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH-----HHHHHHHhcCc
Confidence 999752 1 223 4899999999999999999999 544332 23333332211 01222333356
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCc
Q 028388 180 VRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 180 ~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
++.+|. +.+++++++.|.+.+..
T Consensus 133 v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 133 VIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred eEEEECCCCCHHHHHHHHHHHHcc
Confidence 788886 77999999999998873
No 42
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.76 E-value=2e-16 Score=115.69 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcCCchHHHHHHHHHc--CCCCCHHHH-------HH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKE--GKIVPSEVT-------IK 87 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~ 87 (209)
++++|+|+|++||||||+++.|++.++. ..+.. +. +.+...+..+...+.. ....+.... ..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----RE--PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----eC--CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998732 11111 00 1112233444444331 111111111 11
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCC-
Q 028388 88 LLQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRED- 150 (209)
Q Consensus 88 ~i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~- 150 (209)
.+...+.. ..+..+|+|.++.+. .+...+... ....||++|||++|++++.+|+.+| +..+
T Consensus 76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R--~~~~~ 153 (205)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRAR--GELDR 153 (205)
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcch
Confidence 11111111 247899999755432 122222221 2267999999999999999999988 4211
Q ss_pred --CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 151 --DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.....+.+++...+. .+.. .....++++|++.+++++.++|.+.|.+.
T Consensus 154 ~~~~~~~~~~~~~~~y~---~~~~--~~~~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 154 IEQEGLDFFERVREGYL---ELAE--KEPERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred hhhhhHHHHHHHHHHHH---HHHH--hCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 111223333332211 1111 12236788999999999999999887543
No 43
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.75 E-value=4.1e-16 Score=113.49 Aligned_cols=167 Identities=19% Similarity=0.315 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCC---CCCHHHH-------HHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEVT-------IKL 88 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~ 88 (209)
++|+|+|++||||||+++.|++.+ |+.++.... +.....+..++.++.... ..+.... ...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 544443211 011112223333322211 1111100 111
Q ss_pred HHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388 89 LQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (209)
Q Consensus 89 i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~ 152 (209)
+.+.+.. ..+..+|+|.++.+- .+...+... ....|+.+|||++|++++.+|+.+| ++....
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~ 152 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEAR--GRDDRD 152 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcchh
Confidence 1111211 247899999765331 122222221 3357999999999999999999988 432221
Q ss_pred ---HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 153 ---VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 153 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
...+.+++...+. .+...+ ...++++|++.+++++.++|.+.|.
T Consensus 153 ~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 153 EQEGLEFHERVREGYL---ELAAQE--PERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 1222222222111 111111 2367899999999999999988764
No 44
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.75 E-value=2.2e-16 Score=114.62 Aligned_cols=162 Identities=17% Similarity=0.274 Sum_probs=87.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCCH------------H
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS------------E 83 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~ 83 (209)
+++|+|+|+|||||||+++.|++.++. .++-... +.....+..+++++.... .... .
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE------PGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999853 2221100 011222333333321111 1110 0
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCH------------HHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccCCCC
Q 028388 84 VTIKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQGRE 149 (209)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~------------~~~~~~~~~~~~--~~~~~i~L~~~~~~~~~R~~~r~~~~~ 149 (209)
.....+...+. .+..+|+|.+..+- .+...+.. ... .|+++|||++|++++.+|+..| +..
T Consensus 77 ~~~~~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~-~~~~~~~d~~i~l~~~~~~~~~R~~~r--~~~ 151 (195)
T TIGR00041 77 HLEDKIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE-DALGDMPDLTIYLDIDPEVALERLRKR--GEL 151 (195)
T ss_pred HHHHHHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHH-HhhCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence 11122222222 36789999753221 12222322 222 3999999999999999999988 332
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHH
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i 196 (209)
. ..... ....+........+.+.....++++|++.+++++..+|
T Consensus 152 ~--~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 152 D--REEFE-KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred c--hHHHH-HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 1 11111 11111111111122233244688999999999988764
No 45
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.75 E-value=1.6e-16 Score=113.34 Aligned_cols=169 Identities=21% Similarity=0.337 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
|+.++.|+|+|+|||||||+++.|++.+|+.+++.|+++.... +......... .+..........++......
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~~---~g~~~~~~~~~~~~~~l~~~-- 73 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA--GKSIPEIFEE---EGEAAFRELEEEVLAELLAR-- 73 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--
Confidence 4567899999999999999999999999999999988876542 2222211111 11111112223344444432
Q ss_pred CCeEEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 98 NDKFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 98 ~~~~i~dg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
...+|..|. .........+. ....+|||++|++.+.+|+..|.. ++....+...+.+..+.....+. |.
T Consensus 74 ~~~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~---~~ 144 (175)
T PRK00131 74 HNLVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPL---YE 144 (175)
T ss_pred CCCEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHH---HH
Confidence 233444331 11222222221 234799999999999999998721 22111111122222232322222 33
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...++++..++.+++++++.|.+.+..
T Consensus 145 ~~~dl~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 145 EVADITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred hhcCeEEeCCCCCHHHHHHHHHHHHHh
Confidence 323454444578999999999988754
No 46
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.74 E-value=2.6e-16 Score=116.09 Aligned_cols=172 Identities=15% Similarity=0.270 Sum_probs=92.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHH-HHHHH-HcCCchHH------HHHHHHHcCC---CCCHHHH------
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL-LRAEI-KSGSENGT------MIQNMIKEGK---IVPSEVT------ 85 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~-~~~~~-~~~~~~~~------~~~~~~~~~~---~~~~~~~------ 85 (209)
+|+|+|+.||||||+++.|+++++..++..... ..... +.+...+. .++.+..... .......
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 589999999999999999999998755533200 00000 00111111 1222222211 1111111
Q ss_pred -HHHHHHHHHh--cCCCeEEEeCCCCCH------------------HHHHHHHHh---cCCCCcEEEEEecCHHHHHHHH
Q 028388 86 -IKLLQKAMEE--SGNDKFLIDGFPRNE------------------ENRAAFEAV---TKIEPEFVLFFDCSEEEMERRI 141 (209)
Q Consensus 86 -~~~i~~~~~~--~~~~~~i~dg~~~~~------------------~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~ 141 (209)
...+...+.. ..+..||+|++..+- .....+.+. ....||++|||++|++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 1111111111 136789999874331 111111110 3367999999999999999999
Q ss_pred hhccCCCCCC--cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCC--CChHHHHHHHHH
Q 028388 142 LNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKA 198 (209)
Q Consensus 142 ~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~ee~~~~i~~ 198 (209)
.+| ++... ....+.+++...+..+ ....+.....++++|++ .++++++++|..
T Consensus 161 ~~R--~~~~e~~~~~~yl~~l~~~y~~~--~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 161 KKR--GDPHEMKVTSAYLQDIENAYKKT--FLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHc--CCchhhcccHHHHHHHHHHHHHH--HHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 998 44321 2223333443333221 01113345578999987 788888887754
No 47
>PRK04182 cytidylate kinase; Provisional
Probab=99.74 E-value=5.6e-16 Score=111.07 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
++|+|+|+|||||||+++.|++.+|+++++.+++++............+......... ....+...+..... .+.++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~ 77 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPE-IDKEIDRRQLEIAE--KEDNV 77 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCch-HHHHHHHHHHHHHh--cCCCE
Confidence 4799999999999999999999999999999888887654322111112111111111 01111222222211 34678
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH-HHHHh-----
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV-VQYYE----- 175 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----- 175 (209)
|+||..... + ....++++|||++|++++.+|+..| .. .+.....+.+.......... ...|.
T Consensus 78 Vi~g~~~~~-----~---~~~~~~~~V~l~a~~e~~~~Rl~~r--~~--~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (180)
T PRK04182 78 VLEGRLAGW-----M---AKDYADLKIWLKAPLEVRAERIAER--EG--ISVEEALEETIEREESEAKRYKEYYGIDIDD 145 (180)
T ss_pred EEEEeecce-----E---ecCCCCEEEEEECCHHHHHHHHHhc--cC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 888742111 1 1112678999999999999999987 21 12222222111111111111 11111
Q ss_pred -hcCcEEEEcC-CCChHHHHHHHHHhcCcch
Q 028388 176 -AKGKVRKIDA-AKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 176 -~~~~~~~id~-~~~~ee~~~~i~~~i~~~~ 204 (209)
.... +++|+ ..+++++++.|.+.+....
T Consensus 146 ~~~~d-~~idt~~~~~~~~~~~I~~~~~~~~ 175 (180)
T PRK04182 146 LSIYD-LVINTSRWDPEGVFDIILTAIDKLL 175 (180)
T ss_pred ccccc-EEEECCCCCHHHHHHHHHHHHHHHh
Confidence 2233 45554 6799999999998886543
No 48
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.74 E-value=5e-16 Score=110.47 Aligned_cols=164 Identities=18% Similarity=0.282 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
..|+|+|+|||||||+++.|++++|+++++.|.+..... +......... .++....+....++. .+. ....+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~--g~~~~~~~~~---~g~~~~~~~e~~~~~-~~~--~~~~v 74 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS--NMTVAEIVER---EGWAGFRARESAALE-AVT--APSTV 74 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHH-Hhc--CCCeE
Confidence 358889999999999999999999999999988776652 2222221111 111111111223332 222 22333
Q ss_pred EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (209)
Q Consensus 102 i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (209)
|.-| ++........+.. .+++|||++|++++.+|+..| ...++......+.+.+....+...+ .|...
T Consensus 75 i~~ggg~vl~~~~~~~l~~-----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~---~y~~~ 146 (171)
T PRK03731 75 IATGGGIILTEENRHFMRN-----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREA---LYREV 146 (171)
T ss_pred EECCCCccCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHH---HHHHh
Confidence 3333 3333333333333 567999999999999999876 1122211111222222223232222 23332
Q ss_pred CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 178 GKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 178 ~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
. .+++|++.++++++++|.+.+..
T Consensus 147 a-~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 147 A-HHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred C-CEEEcCCCCHHHHHHHHHHHHhc
Confidence 2 37888889999999999988753
No 49
>PRK13946 shikimate kinase; Provisional
Probab=99.74 E-value=5.9e-16 Score=111.23 Aligned_cols=165 Identities=17% Similarity=0.243 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (209)
.++.|+++|+|||||||+++.|++++|+++++.|....... +......+.. .+..........++..... .+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~--~~~ 81 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK--GGP 81 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh--cCC
Confidence 45689999999999999999999999999999987665542 2222222111 1111112222444444443 234
Q ss_pred eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC---CcHHHHHHHHHHHHhhchhHHHHH
Q 028388 100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED---DNVETIRKRFKVFLESSLPVVQYY 174 (209)
Q Consensus 100 ~~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 174 (209)
.||..| .+........+.. ..++|||++|++++.+|+..|. +++. ..... .+....+...+ .|
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r~-~rp~~~~~~~~~---~i~~~~~~R~~---~y 149 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRRD-TRPLLRTADPKE---TLARLMEERYP---VY 149 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCCC-CCCcCCCCChHH---HHHHHHHHHHH---HH
Confidence 555554 2344444444433 3478999999999999999871 1221 11112 22222222223 24
Q ss_pred hhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 175 EAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.. .++.+.+++.+++++++.|...+....
T Consensus 150 ~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 150 AE-ADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred Hh-CCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 43 456666668899999999998887654
No 50
>PRK08118 topology modulation protein; Reviewed
Probab=99.74 E-value=1e-16 Score=113.18 Aligned_cols=141 Identities=18% Similarity=0.280 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
+.|+|+|+|||||||+|+.|++.++.++++.|+++... .....+.+....++...+. ...+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~---~~~w 62 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK---EDEW 62 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc---CCCE
Confidence 46999999999999999999999999999998876531 0122334444555555444 3579
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--c-CCC--CC---CcHH----HHHHHHHHHHhhchh
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N-QGR--ED---DNVE----TIRKRFKVFLESSLP 169 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~-~~~--~~---~~~~----~~~~~~~~~~~~~~~ 169 (209)
|+||.+..... .. ...+|.+|||++|.+++..|+.+| . .+. ++ ...+ .+.+.+..|....++
T Consensus 63 VidG~~~~~~~-~~-----l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~ 136 (167)
T PRK08118 63 IIDGNYGGTMD-IR-----LNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRP 136 (167)
T ss_pred EEeCCcchHHH-HH-----HHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhH
Confidence 99996432211 12 224899999999999999999998 1 221 11 1112 455666666655555
Q ss_pred HH-HHHhh---cCcEEEEcCCC
Q 028388 170 VV-QYYEA---KGKVRKIDAAK 187 (209)
Q Consensus 170 ~~-~~~~~---~~~~~~id~~~ 187 (209)
.+ ..+.. ...++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~ 158 (167)
T PRK08118 137 SILKRLNQLSEEKDIVILKSRN 158 (167)
T ss_pred HHHHHHHhcCCCCeEEEECCHH
Confidence 32 22222 22566677643
No 51
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.74 E-value=2.2e-16 Score=114.32 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------- 85 (209)
.+|+|+|++||||||+++.|++ +|+++++.|.+.++.+..+......+.+.+.. ...+....+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 99999999999999877666555555444422 112222111
Q ss_pred -----------HHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 86 -----------IKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 86 -----------~~~i~~~~~~~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
...+...+.... ...+|+|.- ...+. .+ ...+|.+|++++|++++.+|+..| . ....
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-ll~e~--~~----~~~~D~vi~V~a~~e~~~~Rl~~R--~--~~s~ 150 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIP-LLFEN--GL----EKLVDRVLVVDAPPETQLERLMAR--D--GLSE 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-HhhcC--Cc----hhhCCeEEEEECCHHHHHHHHHHc--C--CCCH
Confidence 122223333222 256777752 11110 11 124789999999999999999987 2 3455
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
+.+..++..... ..+... ... ++|+++.+.+++.+++.++++.
T Consensus 151 e~~~~ri~~Q~~----~~~~~~-~ad-~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 151 EEAEAIIASQMP----REEKLA-RAD-DVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHHHHHHHhCC----HHHHHH-hCC-EEEECCCCHHHHHHHHHHHHHh
Confidence 667766654322 222112 222 6777777999999999887643
No 52
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.74 E-value=3e-16 Score=113.49 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----C-CCCHHHH----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----K-IVPSEVT---------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~---------- 85 (209)
++|+|+|++||||||+++.|++.+|+++++.|++.++.+..+......+.+.+... . .+....+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 47999999999999999999999999999999999998877776666666555321 1 1111111
Q ss_pred ------------HHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388 86 ------------IKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (209)
Q Consensus 86 ------------~~~i~~~~~~~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~ 152 (209)
...+...+.... ...+++|. |...+. .+. ..+|.+|+++||.+++.+|+..| . ...
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~~~----~~~D~ii~V~a~~e~r~~Rl~~R--~--g~s 150 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--KLT----DLCSEIWVVDCSPEQQLQRLIKR--D--GLT 150 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--chH----hCCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence 122233333222 34666663 211111 111 24789999999999999999987 2 345
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
.+.+..++... . +... .....+ ++|+++.+.+++.+++.+++
T Consensus 151 ~e~~~~ri~~Q---~-~~~~-k~~~aD-~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 151 EEEAEARINAQ---W-PLEE-KVKLAD-VVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred HHHHHHHHHhC---C-CHHH-HHhhCC-EEEECCCCHHHHHHHHHHHH
Confidence 56666665432 1 2222 122233 46777779999999998775
No 53
>PRK07933 thymidylate kinase; Validated
Probab=99.73 E-value=1.3e-16 Score=116.95 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC---ceec----------HhHHHHHHHHcCCc-h--HHHHHHHHHcCCCCCHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGY---THLS----------AGDLLRAEIKSGSE-N--GTMIQNMIKEGKIVPSEVT 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~----------~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 85 (209)
++|+|+|+.||||||+++.|+++|.. .++- .++.+++.+..... . .......+-...+. +.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~--~~- 77 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA--GA- 77 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh--hh-
Confidence 57999999999999999999999942 2211 13444444332110 0 00001111111110 00
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCHH--------------HHHHHHHh-----cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028388 86 IKLLQKAMEESGNDKFLIDGFPRNEE--------------NRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQ 146 (209)
Q Consensus 86 ~~~i~~~~~~~~~~~~i~dg~~~~~~--------------~~~~~~~~-----~~~~~~~~i~L~~~~~~~~~R~~~r~~ 146 (209)
...+..++. .+..||+|+|..+-. ....+..+ ....||++|||++|++++.+|+.+|
T Consensus 78 ~~~I~p~l~--~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R-- 153 (213)
T PRK07933 78 RDELAGLLA--AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR-- 153 (213)
T ss_pred HHHHHHHHh--CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh--
Confidence 112333333 478999998764421 01111111 2347999999999999999999988
Q ss_pred CCCC--CcHHHHHHHHHHHHhhchhHHHHHhh---cCcEEEEcCCCChHHHHHHHHHhc
Q 028388 147 GRED--DNVETIRKRFKVFLESSLPVVQYYEA---KGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
++.. ...+.+.. -..|.+.....+..+.. ...++++|++.+++++.+.|.+.|
T Consensus 154 ~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 154 AAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred ccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 3211 00011111 11222223222222222 237888999999999999998765
No 54
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.73 E-value=5.4e-16 Score=110.08 Aligned_cols=167 Identities=16% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (209)
.++..|+|.|++||||||+++.|++.+++.+++.|..+.... +......+.. .+.....+....++..... .
T Consensus 2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~i~~~~~~---~g~~~fr~~e~~~l~~l~~--~- 73 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADIGWVFDV---EGEEGFRDREEKVINELTE--K- 73 (172)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcCHhHHHHH---hCHHHHHHHHHHHHHHHHh--C-
Confidence 456789999999999999999999999999999987665442 2222211111 1111111122334444322 2
Q ss_pred CeEEEe-C--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 99 DKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 99 ~~~i~d-g--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
..+++. | .+........+.. .+.+|||++|.+++.+|+..+ ..|+........+.+..+.+...++ |.
T Consensus 74 ~~~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~-~~rP~~~~~~~~~~~~~l~~~R~~~---Y~ 144 (172)
T PRK05057 74 QGIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRD-KKRPLLQVDDPREVLEALANERNPL---YE 144 (172)
T ss_pred CCEEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC-CCCCCCCCCCHHHHHHHHHHHHHHH---HH
Confidence 334443 2 2233344444444 357999999999999999865 1232221111122233444444454 44
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...++.+..++.+++++++.|.+.+..
T Consensus 145 ~~Ad~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 145 EIADVTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred hhCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 434444433467999999999887753
No 55
>PRK13947 shikimate kinase; Provisional
Probab=99.72 E-value=5.1e-16 Score=110.44 Aligned_cols=163 Identities=16% Similarity=0.244 Sum_probs=93.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 102 (209)
.|+|.|+|||||||+++.|++.+|+++++.|.++... . +....+.+.. .+.....+....+++. +.. ....+|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~-~-g~~~~~~~~~---~ge~~~~~~e~~~~~~-l~~-~~~~vi 75 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM-T-GMTVAEIFEK---DGEVRFRSEEKLLVKK-LAR-LKNLVI 75 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh-c-CCcHHHHHHH---hChHHHHHHHHHHHHH-Hhh-cCCeEE
Confidence 4999999999999999999999999999998877665 1 2222111111 1111111222223332 221 123333
Q ss_pred EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcE
Q 028388 103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180 (209)
Q Consensus 103 ~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (209)
-.| .+........+.+ ..++|||++|++.+.+|+..| ..++........+++....+...+ +|. ...+
T Consensus 76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r-~~rp~~~~~~~~~~i~~~~~~r~~---~y~-~ad~ 145 (171)
T PRK13947 76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKK-KSRPLLMVGDPEERIKELLKEREP---FYD-FADY 145 (171)
T ss_pred ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH---HHH-hcCE
Confidence 222 3333444444433 247999999999999999876 123221112233333333332222 233 2345
Q ss_pred EEEcCCCChHHHHHHHHH-hcCc
Q 028388 181 RKIDAAKPVAEVFDAVKA-VFTP 202 (209)
Q Consensus 181 ~~id~~~~~ee~~~~i~~-~i~~ 202 (209)
++.+++.++++++++|.+ ++..
T Consensus 146 ~Idt~~~~~~~i~~~I~~~~~~~ 168 (171)
T PRK13947 146 TIDTGDMTIDEVAEEIIKAYLKL 168 (171)
T ss_pred EEECCCCCHHHHHHHHHHHHHhh
Confidence 555567899999999998 6544
No 56
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.71 E-value=3e-15 Score=108.04 Aligned_cols=173 Identities=13% Similarity=0.196 Sum_probs=102.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchH-HHHHHHHHcCCCCC----HHH----------
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVP----SEV---------- 84 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~---------- 84 (209)
++++|+|+|+|||||||+|+.|++++++.++..+|++++.+....... ......+..+..++ ...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998877532211 00001010011111 111
Q ss_pred ----HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhc-cCCCCCCcHHHHHH
Q 028388 85 ----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNR-NQGREDDNVETIRK 158 (209)
Q Consensus 85 ----~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r-~~~~~~~~~~~~~~ 158 (209)
+..++...+. .+.++|+|+.+........... . . ..++++.+ ++++..+|+..| .......+.+.+.+
T Consensus 82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~-~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~ 155 (197)
T PRK12339 82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT-N--N-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE 155 (197)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh-c--C-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence 1222333333 5899999997666555433222 1 1 25666665 678888999999 11122233444555
Q ss_pred HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
.+...+....-+.+...+.+ +-++++. ++++.++.+.+.+
T Consensus 156 ~~~~ir~i~~~l~~~a~~~~-i~~i~~~-~~~~~~~~~~~~~ 195 (197)
T PRK12339 156 HLPEYRTIMDYSIADARGYN-IKVIDTD-NYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCeecCc-cHHHHHHHHHHHh
Confidence 55444443333444434433 5566665 6888888777654
No 57
>PRK13976 thymidylate kinase; Provisional
Probab=99.71 E-value=3.3e-15 Score=108.96 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCc-----eecHhHHHHHHHHcCCchHHHHHHHHHcCCCC-CHHHH-------HHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYT-----HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-PSEVT-------IKL 88 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~ 88 (209)
++|+|+|+.||||||+++.|++.|.-. ++-. ++ +.++..++.+++.+...... +.... ...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~e--P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----RE--PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----eC--CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999988532 2111 11 22444555555555431111 11111 112
Q ss_pred HHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 89 LQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 89 i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
+.+.+.. ..+..||+|.|..+- ++...+... ....||++|||++|++++.+|+.++ +......
T Consensus 75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~--~~e~~~~ 152 (209)
T PRK13976 75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN--GYEFMDL 152 (209)
T ss_pred HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc--chhcccH
Confidence 2222221 148899999876441 222223221 2347999999999999999999754 2111122
Q ss_pred HHHHHHHH-HHHhhchhHHHHHhhcCcEEEEcC---CCC---hHHHHHHHHHhcCcch
Q 028388 154 ETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDA---AKP---VAEVFDAVKAVFTPKD 204 (209)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~---~~~---~ee~~~~i~~~i~~~~ 204 (209)
+ +.++.. .|.+. .. .....+..+|+ +.+ ++++.++|.+.|....
T Consensus 153 ~-~l~~v~~~Y~~l----~~--~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 153 E-FYDKVRKGFREI----VI--KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred H-HHHHHHHHHHHH----HH--hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence 2 222222 22221 11 11234677777 345 8999999988876544
No 58
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.71 E-value=5.3e-15 Score=105.13 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GND 99 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 99 (209)
++|.|+|++||||||+|+.|++.+|+++++.++++++...........+........ .....+...+... .+.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~ 75 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999998887764432111111111111111 1122222222211 356
Q ss_pred eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH-HHHHhh--
Q 028388 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV-VQYYEA-- 176 (209)
Q Consensus 100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 176 (209)
.+|+||..... + ....++++|||++|++++.+|+..| .. .+.+...+++.......... ..++..
T Consensus 76 ~~Vi~g~~~~~-----~---~~~~~d~~v~v~a~~~~r~~R~~~R--~~--~s~~~a~~~~~~~d~~~~~~~~~~~~~~~ 143 (171)
T TIGR02173 76 NVVLESRLAGW-----I---VREYADVKIWLKAPLEVRARRIAKR--EG--KSLTVARSETIEREESEKRRYLKFYGIDI 143 (171)
T ss_pred CEEEEecccce-----e---ecCCcCEEEEEECCHHHHHHHHHHc--cC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 78889864221 1 1234678999999999999999987 22 23333333332221111111 111211
Q ss_pred ---cCcEEEEcC-CCChHHHHHHHHHhc
Q 028388 177 ---KGKVRKIDA-AKPVAEVFDAVKAVF 200 (209)
Q Consensus 177 ---~~~~~~id~-~~~~ee~~~~i~~~i 200 (209)
...-+++|+ ..++++ ++.|.+++
T Consensus 144 ~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 144 DDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred cccccccEEEECCCCCHHH-HHHHHHHh
Confidence 111256666 569999 99888765
No 59
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.70 E-value=3e-15 Score=105.62 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=91.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHHHHhc
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES 96 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~ 96 (209)
|+|+|+|||||||+++.|++.++..+++.|++.... ...+....... ...+. ...+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~-- 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDD----------RWPWLQNLNDASTAAAA-- 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhh----------HHHHHHHHHHHHHHHHh--
Confidence 578999999999999999999999999998864221 11111110000 01111 122222222
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
.+..+|+|...........+.. . .....++||++|++++.+|+..| +......+.+..++..+. .+. ..
T Consensus 69 ~~~~~Vi~~t~~~~~~r~~~~~-~-~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~---~~~----~~ 137 (163)
T TIGR01313 69 KNKVGIITCSALKRHYRDILRE-A-EPNLHFIYLSGDKDVILERMKAR--KGHFMKADMLESQFAALE---EPL----AD 137 (163)
T ss_pred cCCCEEEEecccHHHHHHHHHh-c-CCCEEEEEEeCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhC---CCC----CC
Confidence 2444466654443444444443 2 22334799999999999999988 322223344444433321 111 11
Q ss_pred cCcEEEEcCCCChHHHHHHHHHhc
Q 028388 177 KGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 177 ~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
...++++|++.+++++.+++...+
T Consensus 138 e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 138 ETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred CCceEEEECCCCHHHHHHHHHHHH
Confidence 135799999999999999988765
No 60
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.70 E-value=3.5e-16 Score=112.77 Aligned_cols=156 Identities=19% Similarity=0.282 Sum_probs=86.3
Q ss_pred EEcCCCCChhHHHHHHHHHhCCcee---cHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH------------HHHHHHH
Q 028388 26 VLGGPGSGKGTQCANIVEHFGYTHL---SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE------------VTIKLLQ 90 (209)
Q Consensus 26 i~G~pgsGKsTla~~L~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~i~ 90 (209)
|+|++||||||+++.|++.|....+ ..-. +.+...+..+++++......... .....+.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~------~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~ 74 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFP------PGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIR 74 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEES------STSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999953221 1000 11223333444433311111111 0112233
Q ss_pred HHHHhcCCCeEEEeCCCCC------------HHHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccC-CCCCCcHHH
Q 028388 91 KAMEESGNDKFLIDGFPRN------------EENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQ-GREDDNVET 155 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~~~~--~~~~~i~L~~~~~~~~~R~~~r~~-~~~~~~~~~ 155 (209)
..+. .+..||+|.|..+ ..+...+.. ... .||++|||++|++++.+|+..|.. .+.......
T Consensus 75 ~~l~--~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~-~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~ 151 (186)
T PF02223_consen 75 PALK--RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNK-DIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLE 151 (186)
T ss_dssp HHHH--TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHH-HHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHH
T ss_pred HHHc--CCCEEEEechhHHHHHhCccccCCcchhhhHHHH-HhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHH
Confidence 3333 4799999965322 223333333 222 899999999999999999999921 111122222
Q ss_pred HHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHH
Q 028388 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196 (209)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i 196 (209)
+..+ .++.. .+.+.....++++|++.+++++.++|
T Consensus 152 ~~~~---~~~~y---~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 152 YLRR---VREAY---LELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHH---HHHHH---HHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred HHHH---HHHHH---HHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 2222 22221 12222456899999999999999876
No 61
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.69 E-value=5e-15 Score=107.06 Aligned_cols=169 Identities=17% Similarity=0.131 Sum_probs=103.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc----CCCCCH------------
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE----GKIVPS------------ 82 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------ 82 (209)
-.|..|.|+|.+||||||+++.|++.+|+++++.|.+.++.+.. ......+.+.++. ...+..
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE 82 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence 34688999999999999999999999999999999888887654 2222222222211 011111
Q ss_pred ----------HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388 83 ----------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (209)
Q Consensus 83 ----------~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~ 152 (209)
+.+...+...+.......+++|. |...+....+ ...+|.+|++.||+++..+|+..| ...+
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~~~~~----~~~~D~vi~V~a~~e~ri~Rl~~R----d~~s 153 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPYNFRH----YDYLKKVIVIKADLETRIRRLMER----DGKN 153 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhccCch----hhhCCEEEEEECCHHHHHHHHHHc----CCCC
Confidence 11123333333333334666774 2221110000 124789999999999999999977 2334
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCC-ChHHHHHHHHHhcCcc
Q 028388 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFTPK 203 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~ee~~~~i~~~i~~~ 203 (209)
.+...+++..... ..+. ....+ ++|++++ +.+++..++...+++.
T Consensus 154 ~~~a~~ri~~Q~~----~eek-~~~aD-~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 154 RQQAVAFINLQIS----DKER-EKIAD-FVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred HHHHHHHHHhCCC----HHHH-HHhCC-EEEECcCCCHHHHHHHHHHHHHHH
Confidence 5566655433211 1222 22233 5677777 9999999999887764
No 62
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.69 E-value=9.2e-16 Score=108.93 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=71.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCcee----cHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL----SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
..++|+|.|+.|+||||||+.|+++++...+ .-+.++...+.+...++..++-++.... .+-+......
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~R-------fk~~k~~~~~ 75 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNR-------FKKIKKALSD 75 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHH-------HHHHHHHhcc
Confidence 4578999999999999999999999996443 3445555554444445444444332211 1111111111
Q ss_pred c---CCCeEEEeCC-C---------CCHHHHHHHHHh---------cCC-CCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 96 S---GNDKFLIDGF-P---------RNEENRAAFEAV---------TKI-EPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 96 ~---~~~~~i~dg~-~---------~~~~~~~~~~~~---------~~~-~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
. ..+.++-|.+ + .+..+...+..+ ..+ .||++|||+|+.++..+|+.+| ||+-+
T Consensus 76 ~~~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~R--gR~~E 152 (216)
T COG1428 76 KNNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKR--GRPFE 152 (216)
T ss_pred cccccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHh--CCCcc
Confidence 0 0222333320 0 011111111111 233 8999999999999999999999 66544
No 63
>PRK00625 shikimate kinase; Provisional
Probab=99.69 E-value=2.7e-15 Score=106.15 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (209)
+.|+|+|+|||||||+++.|++++++++++.|+++.+..... ....+.+. ..++..........+... . ...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~---~~Ge~~fr~~E~~~l~~l-~--~~~ 74 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQ---AYGEEGFCREEFLALTSL-P--VIP 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHH---HHCHHHHHHHHHHHHHHh-c--cCC
Confidence 359999999999999999999999999999999888753210 12222211 112222122222333322 2 123
Q ss_pred eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 100 ~~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+|..| .+...+....+.. ...+|||++|++++.+|+..|
T Consensus 75 ~VIs~GGg~~~~~e~~~~l~~-----~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 75 SIVALGGGTLMIEPSYAHIRN-----RGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred eEEECCCCccCCHHHHHHHhc-----CCEEEEEECCHHHHHHHHhcC
Confidence 344333 3333333333322 357999999999999999988
No 64
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.69 E-value=5e-16 Score=107.22 Aligned_cols=113 Identities=20% Similarity=0.360 Sum_probs=75.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCch---HHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN---GTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (209)
+|+++|+|||||||+++.|++.+++.+++.|++........... ....... ....+..++...+. .+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~--~g~ 71 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALR--NGN 71 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHH--TT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHH--cCC
Confidence 68999999999999999999999999999988666553211110 0000000 01122344444444 478
Q ss_pred eEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 100 ~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+|+|...........+..+ ....+..+|+|+++.+++.+|+..|
T Consensus 72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 89999877777666665554 2333557999999999999999999
No 65
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.69 E-value=4.4e-15 Score=107.01 Aligned_cols=166 Identities=15% Similarity=0.192 Sum_probs=102.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCC-----C----------CHH--
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----V----------PSE-- 83 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~-- 83 (209)
+++|.|+|.|||||||+++.+++ +|+++++.|++.++.+.++..........++.... . .+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 46899999999999999999998 99999999999998877765444444443331111 0 000
Q ss_pred --HHHH----HHHH----HHHhcCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388 84 --VTIK----LLQK----AMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (209)
Q Consensus 84 --~~~~----~i~~----~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~ 152 (209)
.+.+ ++.. .........+++| ...|.+... ..++.+|++.||+++..+|+.+| + ..+
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e--------iplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--~--~~~ 148 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLE--------IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--D--GLD 148 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEE--------chHHHhccccccCCEEEEEECCHHHHHHHHHhc--C--CCC
Confidence 0011 1111 1111112244444 234444212 22789999999999999999988 4 344
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
.+....++.... +..+.+...+ ++++++.+++++.+++.+.++....
T Consensus 149 ~e~~~~~~~~Q~----~~~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 149 EEDAEARLASQR----DLEEKLALAD--VVIDNDGSIENLLEQIEKLLKELLG 195 (201)
T ss_pred HHHHHHHHHhcC----CHHHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHHh
Confidence 444444433322 2222233223 5788888999999999888766443
No 66
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.68 E-value=1.9e-15 Score=110.49 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=103.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc--------CC-CCCHHH-----
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE--------GK-IVPSEV----- 84 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~----- 84 (209)
+.+++|.|+|++||||||+++.|++ +|+++++.|.+.++.+..+......+...+.. +. .+....
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3468899999999999999999986 99999999888877755443322222222211 00 011111
Q ss_pred -----------------HHHHHHHHHHhc--CC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 85 -----------------TIKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 85 -----------------~~~~i~~~~~~~--~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
+...+...+... .+ ..+++|+ |...+. . ....+|.+|++.+|.+++.+|+.+|
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~-pLL~e~--~----~~~~~d~ii~V~a~~e~~~~Rl~~R 154 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEA-AILFES--G----GDAGLDFIVVVAADTELRLERAVQR 154 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe-eeeeec--C----chhcCCeEEEEECCHHHHHHHHHHc
Confidence 112222222221 12 4555554 222211 1 1124689999999999999999988
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 145 NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
++ ...+.+.+|+..+....... . .. -++|+++.+.+++.+++.++++...
T Consensus 155 --~~--~s~e~~~~Ri~~q~~~~~~~----~-~a-d~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 155 --GM--GSREEIRRRIAAQWPQEKLI----E-RA-DYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred --CC--CCHHHHHHHHHHcCChHHHH----H-hC-CEEEECCCCHHHHHHHHHHHHHHHH
Confidence 43 35677888876543332221 2 22 2567777899999999998886644
No 67
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.68 E-value=3.5e-15 Score=101.69 Aligned_cols=171 Identities=17% Similarity=0.240 Sum_probs=107.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-- 96 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 96 (209)
.+++++|+|.||+||||+++.+.+.+ .+.+++.++++-+...... .-+. ++.+ ...|.+.+..+...+....
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g-lve~-rD~~---Rklp~e~Q~~lq~~Aa~rI~~ 77 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG-LVEH-RDEM---RKLPLENQRELQAEAAKRIAE 77 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC-Cccc-HHHH---hcCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999 8899999999887744311 1111 1111 2445554444444333221
Q ss_pred CCCeEEEeCCC----------CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh
Q 028388 97 GNDKFLIDGFP----------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLE 165 (209)
Q Consensus 97 ~~~~~i~dg~~----------~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~ 165 (209)
....+|+|.+. ..+.+ .+ ...+|+.++.|+++++++..|..+. .+.|+.+..+.+.++...-+-
T Consensus 78 ~~~~iivDtH~~IkTP~GylpgLP~~--Vl---~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~ 152 (189)
T COG2019 78 MALEIIVDTHATIKTPAGYLPGLPSW--VL---EELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRA 152 (189)
T ss_pred hhhceEEeccceecCCCccCCCCcHH--HH---HhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHH
Confidence 12338888532 11222 12 3467999999999999988888877 556677777777664332111
Q ss_pred hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 166 SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 166 ~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
. ...........+.++.+ +..+++....|...|..
T Consensus 153 a--A~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 153 A--AMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred H--HHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 1 11111122345666665 67899999998887753
No 68
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.68 E-value=2.8e-15 Score=108.82 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH-----HHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-----EVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------- 85 (209)
++|+|+|++||||||+++.|++ +|+++++.|++.++.+..+......+.+.+......++ ..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999987 89999999999999888776666666665544322211 111
Q ss_pred -----------HHHHHHHHHhc--CC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 86 -----------IKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 86 -----------~~~i~~~~~~~--~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
...+...+... .+ ..+++|. |...+. . ....+|.+||++||+++..+|+..| . ..
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~-plL~e~--g----~~~~~D~vi~V~a~~e~ri~Rl~~R--~--g~ 149 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM-PLLVEK--G----LDRKMDLVVVVDVDVEERVRRLVEK--R--GL 149 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe-eceeEc--C----ccccCCeEEEEECCHHHHHHHHHHc--C--CC
Confidence 12222222211 12 3455552 211111 0 1125789999999999999999987 2 34
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
+.+....++..+... ... .... -++++++.+++++.+++..+++...
T Consensus 150 s~e~~~~ri~~Q~~~----~~k-~~~a-d~vI~N~g~~e~l~~~v~~~~~~~~ 196 (200)
T PRK14734 150 DEDDARRRIAAQIPD----DVR-LKAA-DIVVDNNGTREQLLAQVDGLIAEIL 196 (200)
T ss_pred CHHHHHHHHHhcCCH----HHH-HHhC-CEEEECcCCHHHHHHHHHHHHHHHH
Confidence 556666666544332 111 1222 2578888899999999998876543
No 69
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.67 E-value=7.3e-15 Score=104.64 Aligned_cols=172 Identities=21% Similarity=0.298 Sum_probs=101.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc----CCch--HHHHHHHHH--------------cCCCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSEN--GTMIQNMIK--------------EGKIV 80 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~----~~~~--~~~~~~~~~--------------~~~~~ 80 (209)
.++|.|-||.||||||+|+.||++||+.|+++|-++|..... +..+ ...+..... ++...
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 488999999999999999999999999999999999876433 1110 111111111 11112
Q ss_pred CHHHH-----------------HHHHHHHHHhc-C-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHH
Q 028388 81 PSEVT-----------------IKLLQKAMEES-G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141 (209)
Q Consensus 81 ~~~~~-----------------~~~i~~~~~~~-~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~ 141 (209)
+..+. +..+....+.. . +.++|+||-- .-....+..++-|||++++++..+|.
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRD--------iGTvV~PdA~lKiFLtAS~e~RA~RR 155 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRD--------IGTVVFPDAELKIFLTASPEERAERR 155 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCC--------CcceECCCCCeEEEEeCCHHHHHHHH
Confidence 11111 11221111111 1 3668888731 01113456788999999999977776
Q ss_pred hhc--cCCCCCCcHHHHHHHHH--HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 142 LNR--NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 142 ~~r--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
-+. ..+.... .+.+.+.+. .+.+..+.... +....+.+++|+ +.+++|++++|..+++.
T Consensus 156 ~~q~~~~g~~~~-~e~ll~eI~~RD~~D~~R~~~P-Lk~A~DA~~iDTs~msieeVv~~il~~~~~ 219 (222)
T COG0283 156 YKQLQAKGFSEV-FEELLAEIKERDERDSNRAVAP-LKPAEDALLLDTSSLSIEEVVEKILELIRQ 219 (222)
T ss_pred HHHHHhccCcch-HHHHHHHHHHhhhccccCcCCC-CcCCCCeEEEECCCCcHHHHHHHHHHHHHH
Confidence 655 2222222 455544443 34444433322 233445667776 77999999999998873
No 70
>PRK12338 hypothetical protein; Provisional
Probab=99.67 E-value=6.8e-15 Score=112.36 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=103.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC--Cch----HHHHHHHH---HcCCCC-C------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SEN----GTMIQNMI---KEGKIV-P------ 81 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~--~~~----~~~~~~~~---~~~~~~-~------ 81 (209)
|.+|.+|+|+|+|||||||+|+.|++++|+.++..+|.+++.+... .++ .....+.+ ...... +
T Consensus 1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~ 80 (319)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC 80 (319)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence 4568999999999999999999999999999997789999876651 111 11111111 111111 1
Q ss_pred ------HHHHHHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCC
Q 028388 82 ------SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDD 151 (209)
Q Consensus 82 ------~~~~~~~i~~~~~~--~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~ 151 (209)
.+.+...+...+.. .++.++|+||............. ....+-..++|..+.+...+|...| ...|.
T Consensus 81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~-- 157 (319)
T PRK12338 81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKRAMEIKRG-- 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHhhhccCCc--
Confidence 11222333333332 25889999998665554442111 1122334666678999999999998 22222
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
....+.+...+....-+.+...+. .+.++++. +.+++++.+.+.|....
T Consensus 158 --~~~l~~f~~Ir~Iq~~l~~~A~e~-~VpvI~N~-did~Tv~~ile~I~e~s 206 (319)
T PRK12338 158 --GKQLEYFRENRIIHDHLVEQAREH-NVPVIKND-DIDCTVKKMLSYIREVC 206 (319)
T ss_pred --hhhhhChHHHHHHHHHHHHhHhhC-CCceeCCC-cHHHHHHHHHHHHHhhe
Confidence 122222222222222222322222 45555554 88999999988886543
No 71
>PLN02422 dephospho-CoA kinase
Probab=99.67 E-value=6.6e-15 Score=108.20 Aligned_cols=164 Identities=20% Similarity=0.155 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------- 85 (209)
++|+|+|.+||||||+++.|+ ++|+++++.|++.++.+..+......+.+.++. ...+....+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 379999999999999999998 689999999999999988766544444443321 111221111
Q ss_pred -----------HHHHHHHHHh---cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 86 -----------IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 86 -----------~~~i~~~~~~---~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
...+...+.. .....+++|. |...+. . ....+|.+|+++||+++..+|+..| . ..
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL~E~--~----~~~~~D~vI~V~a~~e~ri~RL~~R--~--g~ 149 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLLFET--K----MDKWTKPVVVVWVDPETQLERLMAR--D--GL 149 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhhhhc--c----hhhhCCEEEEEECCHHHHHHHHHHc--C--CC
Confidence 1112221111 1134666773 222111 1 1224789999999999999999987 2 34
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
+.+.+.+++..... ... .....+ ++|+++++.+++..++.++++..
T Consensus 150 s~eea~~Ri~~Q~~----~ee-k~~~AD-~VI~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 150 SEEQARNRINAQMP----LDW-KRSKAD-IVIDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred CHHHHHHHHHHcCC----hhH-HHhhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 55666666533221 111 122233 57777779999999998777543
No 72
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.65 E-value=4.8e-15 Score=107.10 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=102.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH------------
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT------------ 85 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------ 85 (209)
+|.|+|++||||||+++.|++ +|+.+++.|.+.+..+..+......+.+.++.. ..+....+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999965 799999999999988776665555454443221 11111111
Q ss_pred ----------HHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388 86 ----------IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (209)
Q Consensus 86 ----------~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~ 154 (209)
...+...+... .+..+|+|. |...+. . ....+|.+|++++|++++.+|+..| . ..+.+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~r~~RL~~R--~--g~s~e 148 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV-PLLFET--D----AYTLCDATVTVDSDPEESILRTISR--D--GMKKE 148 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe-eeeeEc--C----chhhCCEEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence 22222222222 234555563 322221 1 1124689999999999999999987 2 33556
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.+..++..- . +..+. ....+ ++++++.+.+++..++.++++...
T Consensus 149 ~a~~ri~~Q--~--~~~~k-~~~aD-~vI~N~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 149 DVLARIASQ--L--PITEK-LKRAD-YIVRNDGNREGLKEECKILYSTLL 192 (196)
T ss_pred HHHHHHHHc--C--CHHHH-HHhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence 666665441 1 22222 23333 466677799999999998876543
No 73
>PLN02199 shikimate kinase
Probab=99.65 E-value=5.4e-14 Score=105.80 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (209)
+...|+++|++||||||+++.|++.+|+++++.|.++.+.+. +......+.. .|+....+....++.+... ..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~~---~GE~~FR~~E~e~L~~L~~---~~ 173 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFVH---HGENFFRGKETDALKKLSS---RY 173 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHHH---hCHHHHHHHHHHHHHHHHh---cC
Confidence 456899999999999999999999999999999998888632 3333332221 2333333444455555433 22
Q ss_pred eEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC---cHHHH---HHHHHHHHhhchh
Q 028388 100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDD---NVETI---RKRFKVFLESSLP 169 (209)
Q Consensus 100 ~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~---~~~~~---~~~~~~~~~~~~~ 169 (209)
.+|+. |.+.....+..+. ...+|||++|++++.+|+... ...|+.. ..+.+ ...+....+...+
T Consensus 174 ~~VIStGGG~V~~~~n~~~L~------~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~p 247 (303)
T PLN02199 174 QVVVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGE 247 (303)
T ss_pred CEEEECCCcccCCHHHHHHHh------CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHH
Confidence 34444 2333333333322 247999999999999999962 1234332 12211 2455555555555
Q ss_pred HHHHHhhcCcEEEE------------cCCCChHHHHHHHHHhcCcch
Q 028388 170 VVQYYEAKGKVRKI------------DAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 170 ~~~~~~~~~~~~~i------------d~~~~~ee~~~~i~~~i~~~~ 204 (209)
+ |.. ..+.+. ..+.++++++.+|...+.+..
T Consensus 248 l---Y~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l 290 (303)
T PLN02199 248 A---YTN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFL 290 (303)
T ss_pred H---HHh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 5 554 434333 246789999988888776544
No 74
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.65 E-value=5.6e-14 Score=100.26 Aligned_cols=163 Identities=12% Similarity=0.116 Sum_probs=90.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc--eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH-------HHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLLQK 91 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~ 91 (209)
+++|+++|+|||||||+++.|++.++.. +++.|++.... ............+-......+. ......+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 80 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL-PLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA 80 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhc-ChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998654 44666554432 2100000000000000000111 112233333
Q ss_pred HHHhcCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 92 AMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 92 ~~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
.+. .+..+|+|.... .......+..+ ...+.+.|+|.||.+++.+|..+| +... .. +... .+..
T Consensus 81 ~l~--~G~~VIvD~~~~~~~~~r~~~~~~-~~~~~~~v~l~~~~~~l~~R~~~R--~~~~--~~-~~~~--~~~~----- 145 (175)
T cd00227 81 MAR--AGANVIADDVFLGRAALQDCWRSF-VGLDVLWVGVRCPGEVAEGRETAR--GDRV--PG-QARK--QARV----- 145 (175)
T ss_pred HHh--CCCcEEEeeeccCCHHHHHHHHHh-cCCCEEEEEEECCHHHHHHHHHhc--CCcc--ch-HHHH--HHHH-----
Confidence 333 488999997544 33333444442 223457999999999999999988 4221 11 1110 0110
Q ss_pred HHHHhhcCcEEEEcCC-CChHHHHHHHHHhcC
Q 028388 171 VQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT 201 (209)
Q Consensus 171 ~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~ 201 (209)
........+.+|++ .++++++++|.+.|.
T Consensus 146 --~~~~~~~dl~iDts~~s~~e~a~~i~~~l~ 175 (175)
T cd00227 146 --VHAGVEYDLEVDTTHKTPIECARAIAARVQ 175 (175)
T ss_pred --hcCCCcceEEEECCCCCHHHHHHHHHHhcC
Confidence 01112234678875 589999999988763
No 75
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.64 E-value=8.3e-15 Score=113.27 Aligned_cols=167 Identities=17% Similarity=0.273 Sum_probs=96.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
.++.+..|+|+|+|||||||+++.|++.+|+++++.|..+.+.. +......+.. .+...........+...+..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G~~i~ei~~~---~G~~~fr~~e~~~l~~ll~~- 202 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--GLSVSEIFAL---YGQEGYRRLERRALERLIAE- 202 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhh-
Confidence 34567799999999999999999999999999999987665541 2222221111 12211223334445444432
Q ss_pred CCCeEEEeCCC--CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC----CCcHHHHHHHHHHHHhhchhH
Q 028388 97 GNDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 97 ~~~~~i~dg~~--~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~ 170 (209)
....||-.|.. ........+.. ..++|||++|++++.+|+..|...++ ....+.+.+ ......+.
T Consensus 203 ~~~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~----~~~~R~~~ 273 (309)
T PRK08154 203 HEEMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRR----ILASREPL 273 (309)
T ss_pred CCCEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHH----HHHHHHHH
Confidence 22334433321 12222222222 34799999999999999988721222 112233332 22222333
Q ss_pred HHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCcc
Q 028388 171 VQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 171 ~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~~ 203 (209)
|.. .++ ++|+ ..+++++.++|...+...
T Consensus 274 ---y~~-ad~-~I~t~~~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 274 ---YAR-ADA-VVDTSGLTVAQSLARLRELVRPA 302 (309)
T ss_pred ---HHh-CCE-EEECCCCCHHHHHHHHHHHHHHH
Confidence 322 334 4555 559999999999888553
No 76
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.64 E-value=6.5e-15 Score=106.78 Aligned_cols=115 Identities=22% Similarity=0.329 Sum_probs=65.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHh--------HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAG--------DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (209)
+|+|+|++||||||+++.|++++++.++... .+++..+.+...+....+.++. ....+.+.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~-------~~r~~~~~~~~~ 73 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFL-------LSRLKQYKDALE 73 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHH-------HHHHHHHHHHHh
Confidence 4899999999999999999999887554331 1222222110001111111110 001122222221
Q ss_pred h-cCCCeEEEeCCCCCHH---------------HHH---HHHH-h--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 95 E-SGNDKFLIDGFPRNEE---------------NRA---AFEA-V--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 95 ~-~~~~~~i~dg~~~~~~---------------~~~---~~~~-~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
. ..+..+|+|+++.+-. ... .+.. + ....|+++|||+++++++.+|+.+|
T Consensus 74 ~~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R 145 (193)
T cd01673 74 HLSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKR 145 (193)
T ss_pred hcccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1 1478999998765421 011 1111 1 2467999999999999999999988
No 77
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.64 E-value=1.7e-14 Score=107.02 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------- 85 (209)
.+|.|+|.+||||||+++.|++.+|+++++.|.+.++.+..+......+.+.+.. ...+....+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999999999999999999877665544444443321 112222111
Q ss_pred -----------HHHHHHHHH------------hcCCCeEEEeCCCCCHHHHHHHHHhc--CCCCcEEEEEecCHHHHHHH
Q 028388 86 -----------IKLLQKAME------------ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERR 140 (209)
Q Consensus 86 -----------~~~i~~~~~------------~~~~~~~i~dg~~~~~~~~~~~~~~~--~~~~~~~i~L~~~~~~~~~R 140 (209)
...+...+. ......+|+|. | .+.+.. ...+|.++++.+|.++..+|
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-P-------LL~E~~~~~~~~D~iv~V~a~~e~ri~R 153 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-P-------TLFETKTFTYFVSASVVVSCSEERQIER 153 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-c-------hhhccCchhhcCCeEEEEECCHHHHHHH
Confidence 111112221 11123677874 2 222211 12468999999999999999
Q ss_pred HhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCC--CChHHHHHHHHHhcCc
Q 028388 141 ILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 141 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~ee~~~~i~~~i~~ 202 (209)
+..| ...+.+.+.+|+.. +. +..+ .....+ ++|+++ ++.+++..++.+++..
T Consensus 154 L~~R----~g~s~eea~~Ri~~--Q~--~~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 154 LRKR----NGFSKEEALQRIGS--QM--PLEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAW 207 (244)
T ss_pred HHHc----CCCCHHHHHHHHHh--CC--CHHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence 9977 23456777777644 11 1122 223333 455566 7999999999877643
No 78
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.64 E-value=1.7e-14 Score=104.15 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=99.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCH---------------
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPS--------------- 82 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------------- 82 (209)
+|+|+|.+||||||+++.|++..++.+++.|.+.++.+..+......+.+.+.. ...+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999888999999999999887766544444433321 111111
Q ss_pred -------HHHHHHHHHHHHhcC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 83 -------EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 83 -------~~~~~~i~~~~~~~~--~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
+.+...+.+.+.... +..++++.. ...+. .+ ...+|.++++++|.+++.+|+..| . ..+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~p-ll~e~--~~----~~~~D~vv~V~~~~~~~~~Rl~~R--~--~~s~ 149 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVP-LLFEN--KL----RSLCDRVIVVDVSPQLQLERLMQR--D--NLTE 149 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEch-HhhhC--Cc----HHhCCEEEEEECCHHHHHHHHHHc--C--CCCH
Confidence 111233333333222 246666642 11111 11 124678999999999999999987 3 4455
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHH
Q 028388 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 197 (209)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~ 197 (209)
+.+.+++.... +..+. ..... ++|+++.+.+++..++.
T Consensus 150 ~~~~~r~~~q~----~~~~~-~~~ad-~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 150 EEVQKRLASQM----DIEER-LARAD-DVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHHHHHHhcC----CHHHH-HHhCC-EEEECCCCHHHHHHHHh
Confidence 66776655532 22221 22222 56777779999988875
No 79
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.63 E-value=4.7e-14 Score=106.19 Aligned_cols=160 Identities=19% Similarity=0.320 Sum_probs=93.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+|+|+|+|||||||+|+.|++.++ ..+++. |.++..+.. +........ .+....++...+. .
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~~~e~~~-------~~~~~~~i~~~l~--~ 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKEKYEEFI-------RDSTLYLIKTALK--N 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhHHhHHHH-------HHHHHHHHHHHHh--C
Confidence 589999999999999999999883 344545 445443211 000001111 1222344555554 3
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
+..+|+|+.+.....+..+... ....+..+|||++|.+++.+|...| +.. .+.+.+...+..|.. |... +.
T Consensus 68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R--~~~-~~~~~i~~l~~r~e~---p~~~-~~ 140 (249)
T TIGR03574 68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER--GEK-IPNEVIKDMYEKFDE---PGTK-YS 140 (249)
T ss_pred CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC--CCC-CCHHHHHHHHHhhCC---CCCC-CC
Confidence 5779999876444443333321 3345667999999999999999988 432 233333332222221 2111 11
Q ss_pred hcCcEEEEcCCC--ChHHHHHHHHHhcCc
Q 028388 176 AKGKVRKIDAAK--PVAEVFDAVKAVFTP 202 (209)
Q Consensus 176 ~~~~~~~id~~~--~~ee~~~~i~~~i~~ 202 (209)
-....+.+|++. +.+++++.|...+..
T Consensus 141 wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 141 WDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred ccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 012567888754 678999999887643
No 80
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.63 E-value=2.1e-14 Score=118.67 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=104.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
.+-..|++.|+|||||||+++.|++.+|+++++.|+.+.+.. +..+.+.+ ..++..+.+...+++......
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~-- 75 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED-- 75 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 345679999999999999999999999999999999887762 22233322 234444445555556654432
Q ss_pred CCeEE-EeC-CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 98 NDKFL-IDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 98 ~~~~i-~dg-~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
...|| +-| .+........+.. .......+|||++|++++.+|+..+ ..|+.... .-.+++...++...++ |+
T Consensus 76 ~~~VIs~GGG~v~~~~n~~~L~~-~~~~~g~vv~L~~~~~~l~~Rl~~~-~~RPll~~-~~~~~~~~l~~~R~~~---Y~ 149 (542)
T PRK14021 76 FDGIFSLGGGAPMTPSTQHALAS-YIAHGGRVVYLDADPKEAMERANRG-GGRPMLNG-DANKRWKKLFKQRDPV---FR 149 (542)
T ss_pred CCeEEECCCchhCCHHHHHHHHH-HHhcCCEEEEEECCHHHHHHHHhCC-CCCCCCCC-CcHHHHHHHHHHHHHH---HH
Confidence 22233 222 4444555554432 1112247999999999999999754 22333211 1123344444444444 55
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...++.+.....++++++++|.+.+..
T Consensus 150 ~~Ad~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 150 QVANVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred hhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 544454444567999999999887754
No 81
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.62 E-value=1.2e-14 Score=106.70 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=93.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (209)
+.+|.+|.|.|++|||||||++.|++.++ ..+++.|+++...- . ..........+........+.+.+.+.....
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQS-H-LSFEERVKTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcc-c-CCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence 35789999999999999999999999983 45677777654220 0 0000000000111112222333333333221
Q ss_pred h----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388 95 E----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (209)
Q Consensus 95 ~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~ 152 (209)
. .....+|+||....... . ....+|++||+++|.+++.+|...|........
T Consensus 81 ~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~--~----~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~ 154 (209)
T PRK05480 81 GKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDE--R----LRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRS 154 (209)
T ss_pred CCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCch--h----HhhhhceeEEEeCChhHHHHHHHhhcchhcCCC
Confidence 0 11346788986432211 1 112367899999999999999888821111223
Q ss_pred HHHHHHHHHH-HHhhchhHHHHHhhcCcEEEEcCC----CChHHHHHHHHHhcCc
Q 028388 153 VETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAA----KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~----~~~ee~~~~i~~~i~~ 202 (209)
.+.+..++.. .........+.+....+ ++++++ .+.+++.++|..++.+
T Consensus 155 ~e~~~~~~~~~~~~~~~~~i~~~~~~AD-~vI~~~~~~~~~~~~l~~~i~~~~~~ 208 (209)
T PRK05480 155 LESVINQYLSTVRPMHLQFIEPSKRYAD-IIIPEGGKNRVAIDILKAKIRQLLEK 208 (209)
T ss_pred HHHHHHHHHHhhhhhHHhhccHhhccee-EEecCCCcchHHHHHHHHHHHHHhhc
Confidence 3444333222 11111111122233334 455533 3788888888877654
No 82
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.62 E-value=1.7e-14 Score=116.98 Aligned_cols=176 Identities=19% Similarity=0.281 Sum_probs=100.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCch--HHHHHHHHHcCC-------------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKEGK------------- 78 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~------------- 78 (209)
+.++++|.|.|++||||||+++.|+++||+.+++.|.+++... ..+-.. ...+...+.+-.
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceE
Confidence 4578899999999999999999999999999999999999752 111111 111111111000
Q ss_pred -----CC-----------------CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHH
Q 028388 79 -----IV-----------------PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (209)
Q Consensus 79 -----~~-----------------~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~ 135 (209)
.+ ....++..+....++. ...++|+||.- .-....+..++.|||+++++
T Consensus 361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRD--------igtvV~P~AdlKIfL~As~e 432 (512)
T PRK13477 361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRD--------IGTHVFPDAELKIFLTASVE 432 (512)
T ss_pred EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccc--------ceeEEcCCCCEEEEEECCHH
Confidence 00 0111122222221111 23468888741 00002345789999999999
Q ss_pred HHHHHHhhc--cCCCCCCcHHHHHHHHHH--HHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 136 EMERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 136 ~~~~R~~~r--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
++.+|+..+ .++-.....+.+.+.+.. +.+..+.....|...+ .+.+|+ +.+++++++.|.+.+.+
T Consensus 433 vRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~d-ai~IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 433 ERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADD-AIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred HHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCC-eEEEECCCCCHHHHHHHHHHHHHH
Confidence 999987655 122212223444443322 2222222222233223 356665 67999999999998865
No 83
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=3.1e-14 Score=98.51 Aligned_cols=175 Identities=21% Similarity=0.343 Sum_probs=109.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----------H
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------I 86 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 86 (209)
+.+..+|++.|..+|||||.+..|.+.++-..- ...+.+-. ..-+..+..+..++.+....++... .
T Consensus 2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~-~~~l~~FP-~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~ 79 (208)
T KOG3327|consen 2 MIRGALIVLEGLDRSGKSTQCGKLVESLIPGLD-PAELLRFP-ERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHV 79 (208)
T ss_pred CCCccEEeeeccccCCceeehhHHHHHHHhccC-hHHhhhcc-hhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHH
Confidence 457789999999999999999999988843221 11222211 2234455555566655555554433 4
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~ 155 (209)
+.+...+. .+..+|+|.|.++ .+|...+.. ....||+++||+++++++.+| .++ |...-....
T Consensus 80 ~~i~e~l~--kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~-gL~KPDlvlfL~v~p~~~a~r-ggf--G~Erye~v~ 153 (208)
T KOG3327|consen 80 SLIKEKLA--KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV-GLPKPDLVLFLDVSPEDAARR-GGF--GEERYETVA 153 (208)
T ss_pred HHHHHHHh--cCCeEEEecceecchhhhhhcCCCcchhhCCcc-CCCCCCeEEEEeCCHHHHHHh-cCc--chhHHHHHH
Confidence 45555555 4778999987655 234444444 778999999999999995444 444 222112233
Q ss_pred HHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
+.++...+++... -.+...+.++|++.+++++.+.|...+.....
T Consensus 154 fqekv~~~~q~l~-----r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 154 FQEKVLVFFQKLL-----RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHHHHHHHHHH-----hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence 3443333333211 01344789999999999999999877765443
No 84
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.62 E-value=2.6e-14 Score=95.58 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (209)
.+.|+|+|.||+||||+|..||+.+++.++..+++.++--. .....+-+ .--.+..+-+...++..+.+ .+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~y-~c~i~DEdkv~D~Le~~m~~---Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEEY-KCHILDEDKVLDELEPLMIE---GG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhcccccc-cCccccHHHHHHHHHHHHhc---CC
Confidence 35689999999999999999999999999999998876411 11111111 11244556678888888883 77
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.|+|-+. ...|.+ ..+|+++.|.||.+++..|+..|
T Consensus 78 ~IVDyHg-----Cd~Fpe---rwfdlVvVLr~~~s~LY~RL~sR 113 (176)
T KOG3347|consen 78 NIVDYHG-----CDFFPE---RWFDLVVVLRTPNSVLYDRLKSR 113 (176)
T ss_pred cEEeecc-----cCccch---hheeEEEEEecCchHHHHHHHHc
Confidence 8888431 111111 24678999999999999999999
No 85
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.62 E-value=4.7e-14 Score=101.60 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHc-CCchHHHHHHHHHcCCC----------CCHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKS-GSENGTMIQNMIKEGKI----------VPSEVTI 86 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~ 86 (209)
.+++|.||+||||||+++.|+..++..++..+..+... ... -....+.+......+.. +-.. .
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~--~ 80 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVG--I 80 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCc--H
Confidence 57999999999999999999998875554433322211 000 00111221222222211 1101 1
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
-++..+. .+..+|++|. ........+ ....+..+|||++|.+++.+|+..| ++. ..+.+.+++....
T Consensus 81 -~~~~~l~--~g~~VI~~G~---~~~~~~~~~-~~~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~-- 147 (186)
T PRK10078 81 -EIDLWLH--AGFDVLVNGS---RAHLPQARA-RYQSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA-- 147 (186)
T ss_pred -HHHHHHh--CCCEEEEeCh---HHHHHHHHH-HcCCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh--
Confidence 1444444 3677888876 211122233 3334556899999999999999977 433 3455666653221
Q ss_pred chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.+. ....+++|++.++++++++|.+++...
T Consensus 148 ------~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 148 ------RYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred ------hhc-cCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 122 345678888889999999999988653
No 86
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.1e-14 Score=95.77 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=103.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCchHHHHHHHHHcCCCCCHHHHHHH---HHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIKL---LQK 91 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~ 91 (209)
+.+-+|++.|++||||||++..|+++|++.+++.||+....- ..+..+. ....++|+.++ +..
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn----------D~DR~pWL~~i~~~~~~ 79 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN----------DDDRWPWLKKIAVELRK 79 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC----------cccccHHHHHHHHHHHH
Confidence 345589999999999999999999999999999988754431 1122111 11112333222 222
Q ss_pred HHHhcCCCeEEEeCCCCCHHHHHHHHHh-c----CCC---CcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388 92 AMEESGNDKFLIDGFPRNEENRAAFEAV-T----KIE---PEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~----~~~---~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (209)
.+. .++++|+...-.....++.+... . ... --.+|+|.++.+++.+|+.+| ...-.+.+-+..++...
T Consensus 80 ~l~--~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R--~gHFMp~~lleSQf~~L 155 (191)
T KOG3354|consen 80 ALA--SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKR--KGHFMPADLLESQFATL 155 (191)
T ss_pred Hhh--cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhc--ccccCCHHHHHHHHHhc
Confidence 222 57889987654444444444431 0 011 234999999999999999999 66667777776654443
Q ss_pred HhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 164 LESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
.. |. .+..+++.|+.. .++|+++..|.+.+..
T Consensus 156 E~---p~----~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 156 EA---PD----ADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred cC---CC----CCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 22 11 112257778764 8999999998877643
No 87
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=6.7e-15 Score=98.38 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=99.1
Q ss_pred EcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH---HHHHHHHHHHHhc--CCCeE
Q 028388 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLLQKAMEES--GNDKF 101 (209)
Q Consensus 27 ~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~--~~~~~ 101 (209)
.|.+||||||+++.|++++++.+++.|++.-..--. .+..+..+.++ -+...+..++... .+..+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~----------KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIE----------KMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHH----------HHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 389999999999999999999999998875433111 11222222221 1133333333321 23445
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEE
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (209)
|+-..-.....++.+.. ...--.+|||+.+.+++.+|+..| ..+-.+...+..++..... | .....++
T Consensus 71 vi~CSALKr~YRD~LR~--~~~~~~Fv~L~g~~~~i~~Rm~~R--~gHFM~~~ll~SQfa~LE~---P-----~~de~vi 138 (161)
T COG3265 71 VIACSALKRSYRDLLRE--ANPGLRFVYLDGDFDLILERMKAR--KGHFMPASLLDSQFATLEE---P-----GADEDVL 138 (161)
T ss_pred EEecHHHHHHHHHHHhc--cCCCeEEEEecCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhcC---C-----CCCCCEE
Confidence 55433333333344443 222245999999999999999999 7777777777765544322 1 1112689
Q ss_pred EEcCCCChHHHHHHHHHhcCcc
Q 028388 182 KIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 182 ~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.||.+.+++++++++..+++..
T Consensus 139 ~idi~~~~e~vv~~~~~~l~~~ 160 (161)
T COG3265 139 TIDIDQPPEEVVAQALAWLKEG 160 (161)
T ss_pred EeeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999988753
No 88
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.61 E-value=3e-14 Score=99.16 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=71.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S 96 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 96 (209)
+|+|+|+|||||||+|+.|++.+++.+++.|.+..... ..+..... .....+...+....... .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLND----------EDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCc----------cchhhHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999877665321 11111100 00011111111111111 2
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+..+|+|...........+..+....+..+|||++|.+++.+|+..|
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 467889997655555555555522124456999999999999999998
No 89
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.60 E-value=1.7e-13 Score=100.73 Aligned_cols=175 Identities=16% Similarity=0.247 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec---HhHHHHH--------HHHc--CCchHHHHHHHHHcCC--------
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS---AGDLLRA--------EIKS--GSENGTMIQNMIKEGK-------- 78 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~---~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~-------- 78 (209)
..++|++.|+.|||||++|+.||++||+.++. .|+++-. ...+ +....-.+..+..+..
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q 149 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ 149 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence 45799999999999999999999999976654 4443322 1111 0111111222222110
Q ss_pred ----CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCH-H-----------------HHHHHHHh---cCCCCcEEEEEecC
Q 028388 79 ----IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNE-E-----------------NRAAFEAV---TKIEPEFVLFFDCS 133 (209)
Q Consensus 79 ----~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~-~-----------------~~~~~~~~---~~~~~~~~i~L~~~ 133 (209)
.........+++..+. .+++||++..|.+- - ....+.+. ....|.++|||+.|
T Consensus 150 ~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P 227 (393)
T KOG3877|consen 150 DRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP 227 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence 0011222455555555 69999999877651 1 11111111 45679999999999
Q ss_pred HHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchh-HHHHHhhcCcEEEEcC--CCChHHHHHHHHH
Q 028388 134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYEAKGKVRKIDA--AKPVAEVFDAVKA 198 (209)
Q Consensus 134 ~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~id~--~~~~ee~~~~i~~ 198 (209)
.+.+.+|+++| +.+++..-.-...+....+..+. .+..++....++..|. .++-+.+++.|..
T Consensus 228 v~~v~~~Ik~r--g~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIEr 293 (393)
T KOG3877|consen 228 VNKVLENIKRR--GNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIER 293 (393)
T ss_pred cHHHHHHHHhc--CCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhh
Confidence 99999999999 55544321111222222222222 2444566667788886 4466777777754
No 90
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.60 E-value=5.5e-14 Score=100.83 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=99.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHH--------
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE-------- 83 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~-------- 83 (209)
.+|++|+|+||+|||||||++.|.+++.-.+.+.....|...++ +.. ..+.+...+..+.++...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 46889999999999999999999988743334443444432111 000 113333333333333221
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV 162 (209)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (209)
...+.++..+. .++.+|+|-. ..-...+.. .....-++||+.+| .+++.+|+.+| + ..+.+.+.+++..
T Consensus 82 t~~~~i~~~~~--~g~~~i~d~~---~~g~~~l~~-~~~~~~~~Ifi~pps~e~l~~RL~~R--~--~~s~e~i~~Rl~~ 151 (186)
T PRK14737 82 TPKAFIEDAFK--EGRSAIMDID---VQGAKIIKE-KFPERIVTIFIEPPSEEEWEERLIHR--G--TDSEESIEKRIEN 151 (186)
T ss_pred CcHHHHHHHHH--cCCeEEEEcC---HHHHHHHHH-hCCCCeEEEEEECCCHHHHHHHHHhc--C--CCCHHHHHHHHHH
Confidence 12555666665 5889999953 333334444 32222268888885 68899999877 3 3456777777765
Q ss_pred HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.... .+ +....+. +|+++ +++++..++...|..
T Consensus 152 ~~~e----~~-~~~~~D~-vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 152 GIIE----LD-EANEFDY-KIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred HHHH----Hh-hhccCCE-EEECc-CHHHHHHHHHHHHhc
Confidence 3321 11 2222334 44445 899999999988765
No 91
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.59 E-value=3.9e-14 Score=101.35 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=82.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH------------
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT------------ 85 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------ 85 (209)
+|+|+|+|||||||+++.|++ +|+++++.|.+.++.+..+......+...+... ..+....+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999998 999999999999998777666655555554321 11111111
Q ss_pred ----------HHHHHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388 86 ----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (209)
Q Consensus 86 ----------~~~i~~~~~~~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~ 154 (209)
...+...+..... ..+|+|. |...+. .+ ...+|.++++++|+++..+|+..| . ....+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~--~~----~~~~D~vv~V~a~~~~ri~Rl~~R--d--~~s~~ 148 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFET--GL----EKLVDRVIVVDAPPEIQIERLMKR--D--GLSEE 148 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcC--Cc----HHhCCeEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence 2222222222222 4566674 211111 11 124689999999999999999987 2 34556
Q ss_pred HHHHHHHH
Q 028388 155 TIRKRFKV 162 (209)
Q Consensus 155 ~~~~~~~~ 162 (209)
.+.+++..
T Consensus 149 ~~~~r~~~ 156 (179)
T cd02022 149 EAEARIAS 156 (179)
T ss_pred HHHHHHHh
Confidence 66666544
No 92
>PRK07261 topology modulation protein; Provisional
Probab=99.59 E-value=8.1e-15 Score=103.97 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
+.|+|+|+|||||||+|+.|++.++.++++.|.+.... . ....+.+.....+...+.+ ..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~---~~w 61 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-----N-----------WQERDDDDMIADISNFLLK---HDW 61 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-----c-----------cccCCHHHHHHHHHHHHhC---CCE
Confidence 35899999999999999999999999999887654211 0 1222344455666666552 349
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
|+||.+........+. ..|.+|+|++|..++..|+.+|
T Consensus 62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHH
Confidence 9999865433333333 3689999999999999999998
No 93
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.59 E-value=1.3e-13 Score=96.31 Aligned_cols=108 Identities=21% Similarity=0.325 Sum_probs=64.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI 103 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~ 103 (209)
|+|+|+|||||||+++.|++.+|+.+++.|.++...... ......... +...........+..... ...+|+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~~~~---~~~~vi 73 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLLLLT---KENAVI 73 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHHHhc---cCCcEE
Confidence 789999999999999999999999999998887665321 222111111 110001111122222222 223444
Q ss_pred e-C--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 104 D-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 104 d-g--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
+ | +.........+ .....+|||++|++++.+|+..|
T Consensus 74 ~~g~~~i~~~~~~~~~-----~~~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 74 ATGGGAVLREENRRLL-----LENGIVVWLDASPEELLERLARD 112 (154)
T ss_pred ECCCCccCcHHHHHHH-----HcCCeEEEEeCCHHHHHHHhccC
Confidence 4 3 22222221221 23557999999999999999987
No 94
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.58 E-value=5.2e-14 Score=100.16 Aligned_cols=166 Identities=15% Similarity=0.207 Sum_probs=100.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCchHHHHHHHHHcCCCCCH-HHHHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEE 95 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 95 (209)
+.+++|.|++||||||+++.|+..++..+++.+++....- ..+.... .....+. ..+.+.......
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~- 73 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLT--------DEDRLPWLERLNDASYSLYK- 73 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCC--------cccchHHHHHHHHHHHHHHh-
Confidence 4579999999999999999999999998888776532110 0000000 0011111 111222222211
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
....++|+..+ ........+.+ ...+..+|||++|++++.+|+.+| ..+....+.+..++..+.. + -.
T Consensus 74 ~~~~g~iv~s~-~~~~~R~~~r~--~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~~~~~vl~~Q~~~~e~---~----~~ 141 (176)
T PRK09825 74 KNETGFIVCSS-LKKQYRDILRK--SSPNVHFLWLDGDYETILARMQRR--AGHFMPPDLLQSQFDALER---P----CA 141 (176)
T ss_pred cCCCEEEEEEe-cCHHHHHHHHh--hCCCEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHcCC---C----CC
Confidence 12456666444 34444444443 445668999999999999999999 3333445555444333221 1 01
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA 207 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~ 207 (209)
....++.+|++.+++++.+.+...++.++...
T Consensus 142 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (176)
T PRK09825 142 DEHDIARIDVNHDIENVTEQCRQAVQAFRQAL 173 (176)
T ss_pred CcCCeEEEECCCCHHHHHHHHHHHHHHHHhcc
Confidence 12358999999999999999999888776543
No 95
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.57 E-value=1.7e-13 Score=98.18 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCc---eecHhHHHHHHHHcCCch----HHHHHHHHHcCCCC--------CHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSEN----GTMIQNMIKEGKIV--------PSEVTI 86 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~---~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~~~ 86 (209)
.+|+|+|+|||||||+++.|+..++.. .+....+.+.....+..+ ...+......+... ......
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 479999999999999999999987632 111001111100011110 11111111111110 000111
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
.+...+. .+..+|+|+.. .....+.. .. ....+|||++|.+++.+|+..| +++ .++.+.+++..+...
T Consensus 82 -~i~~~~~--~g~~vv~~g~~---~~~~~~~~-~~-~~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~~ 149 (179)
T TIGR02322 82 -EIDQWLE--AGDVVVVNGSR---AVLPEARQ-RY-PNLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSARF 149 (179)
T ss_pred -HHHHHHh--cCCEEEEECCH---HHHHHHHH-HC-CCcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhhc
Confidence 2333333 46789999862 22223322 22 2347999999999999999988 543 345666665432221
Q ss_pred chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
. .....+++++++.+++++.++|.+++++
T Consensus 150 -----~--~~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 150 -----A--AAPADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred -----c--cccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 1 0234567788888999999999998864
No 96
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.57 E-value=2.3e-14 Score=101.96 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----------- 85 (209)
++|.|+|..||||||+++.|++ +|+++++.|.+.++.+..+......+.+.+... ..+....+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5799999999999999999988 999999999999988777766666665555421 22222221
Q ss_pred -----------HHHHHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 86 -----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 86 -----------~~~i~~~~~~~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
...+...+..... ..+++|. |...+. . ....+|.+|++.||.++..+|+.+| ...+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~ri~Rl~~R----~~~~~ 148 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI-PLLFES--G----LEKLCDEVIVVYAPEEIRIKRLMER----DGLSE 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--T----GGGGSSEEEEEE--HHHHHHHHHHH----HTSTH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc-chhhhh--h----HhhhhceEEEEECCHHHHHHHHHhh----CCCcH
Confidence 2223333333223 6677774 222221 1 1224789999999999999999988 24455
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHH
Q 028388 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE 191 (209)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee 191 (209)
+.+..++..-. +..+.....+ ++|+++++.++
T Consensus 149 ~~~~~ri~~Q~----~~~~k~~~ad--~vI~N~g~~~~ 180 (180)
T PF01121_consen 149 EEAEARIASQM----PDEEKRKRAD--FVIDNNGSLEE 180 (180)
T ss_dssp HHHHHHHHTS------HHHHHHH-S--EEEE-SSHHH-
T ss_pred HHHHHHHHhCC----CHHHHHHhCC--EEEECCCCCCC
Confidence 66666544321 2222222223 56666666653
No 97
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.57 E-value=8.6e-14 Score=110.80 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----------- 85 (209)
..|+|+|.+||||||+++.|++ +|+++++.|.+.++.+..+......+.+.++.. ..+....+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3699999999999999999987 899999999999998776654333344333221 11111111
Q ss_pred -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388 86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (209)
Q Consensus 86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~ 154 (209)
...+.+.+....+..+++.+.|...+. . ....+|.+||+++|.+++.+|+..| + ....+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~----~~~~~D~iI~V~ap~e~ri~Rl~~r---R-g~s~~ 150 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--G----MAPLFHLVVVVDADVEVRVRRLVEQ---R-GMAEA 150 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--C----chhhCCEEEEEECCHHHHHHHHHhc---C-CCCHH
Confidence 222333333333445666554433221 1 1124689999999999999999874 1 12233
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
....++..... .+....... ++++++.+.+++..++.+.++...
T Consensus 151 ~a~~ri~~Q~~-----~e~k~~~AD-~vIdN~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 151 DARARIAAQAS-----DEQRRAVAD-VWLDNSGTPDELVEAVRALWADRL 194 (395)
T ss_pred HHHHHHHhcCC-----hHHHHHhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence 33333322111 111122333 567777799999999888776544
No 98
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=9.8e-14 Score=98.01 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchH---HHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENG---TMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
++|+++|+|||||||+|+.|++.|. +..++.+.-+...+.++..+. +..++.+. +.....+..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc-
Confidence 5799999999999999999999884 444443332222222222222 11222111 111224444444
Q ss_pred cCCCeEEEeCCCCCHHHHHH--HHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 96 SGNDKFLIDGFPRNEENRAA--FEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~~~~--~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
+..||+|....-...+.. +.......+..+|||.+|+++|.+|...|
T Consensus 74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence 688999985433322222 11115567778999999999999999776
No 99
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.57 E-value=2.7e-13 Score=99.47 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCch--HHHHHHHHHc-----------------C
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKE-----------------G 77 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~-----------------~ 77 (209)
+++|.|.|++||||||+++.|++++++.+++.|++++... ..+... ...+...... +
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 3689999999999999999999999999999999887652 111110 1111111100 0
Q ss_pred C-----------------CCCHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028388 78 K-----------------IVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139 (209)
Q Consensus 78 ~-----------------~~~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~ 139 (209)
. ....+.+...+.....+. ...++|+||.... + . .....++.|||++|.++..+
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~--~--~----v~~~a~~~ifl~a~~~~Ra~ 153 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIG--T--V----VFPNAEVKIFLDASVEERAK 153 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcc--e--E----EeCCCCEEEEEECCHHHHHH
Confidence 0 000111133333333321 2457999985211 0 0 22336799999999999988
Q ss_pred HHhhc-cCCCCCCcHHHHHHHHHHH--HhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHh
Q 028388 140 RILNR-NQGREDDNVETIRKRFKVF--LESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAV 199 (209)
Q Consensus 140 R~~~r-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~ 199 (209)
|...+ .....+-..+.+.+.+..- .+..+.... .......+++|+ ..+++++++.|.++
T Consensus 154 Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~-~~~a~~~i~Idts~l~ieevv~~I~~~ 216 (217)
T TIGR00017 154 RRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAP-LKKADDALYLDTSNLSIDEVVEKILEY 216 (217)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCc-ccCCCCeEEEECCCCCHHHHHHHHHHh
Confidence 88877 1111123344444444322 122222211 222233355665 67999999998764
No 100
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.57 E-value=1.1e-13 Score=97.10 Aligned_cols=152 Identities=22% Similarity=0.392 Sum_probs=87.9
Q ss_pred CCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCeEEEe---C
Q 028388 30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDKFLID---G 105 (209)
Q Consensus 30 pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~i~d---g 105 (209)
|||||||+++.||+.|++++++.|+.+.+.. +..+.+.+. .+..........++...+... +.|+. |
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG 71 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG 71 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence 7999999999999999999999999887662 222222221 122222233345555544422 44443 2
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH-HHHHHHHHhhchhHHHHHhhcCcEEEEc
Q 028388 106 FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI-RKRFKVFLESSLPVVQYYEAKGKVRKID 184 (209)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id 184 (209)
.+........+.. ...+|||+++++++.+|+..+.. |+....... ......+. ...+. |...+.+ +++
T Consensus 72 ~~~~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~-~R~~~---Y~~~a~~-~v~ 140 (158)
T PF01202_consen 72 IVLKEENRELLKE-----NGLVIYLDADPEELAERLRARDN-RPLLKGKMEHEEILELLF-EREPL---YEQAADI-VVD 140 (158)
T ss_dssp GGGSHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCT-SGGTCSHHHHHHHHHHHH-HHHHH---HHHHSSE-EEE
T ss_pred CcCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHH-HHHHH---HHhcCeE-EEe
Confidence 5555555556553 34799999999999999988721 222211111 11112222 22333 4444444 555
Q ss_pred CCC-ChHHHHHHHHHhcC
Q 028388 185 AAK-PVAEVFDAVKAVFT 201 (209)
Q Consensus 185 ~~~-~~ee~~~~i~~~i~ 201 (209)
++. ++++++++|.+.|+
T Consensus 141 ~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 141 TDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp TSSCHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 544 44999999988763
No 101
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.57 E-value=7.8e-14 Score=96.62 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=73.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 102 (209)
+|.|+|+|||||||+|+.|++.+|+++++.+.+..... ...... ... .....+.+...+.. +. ....+|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~-~~~-~~~i~~~l~~~~~~-~~--~~~~~V 69 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASE-VAA-IPEVRKALDERQRE-LA--KKPGIV 69 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHH-hcc-cHhHHHHHHHHHHH-Hh--hCCCEE
Confidence 58999999999999999999999999999974322211 000000 000 00001112222222 22 245799
Q ss_pred EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHH
Q 028388 103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 103 ~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~ 163 (209)
+||...... ....++++|||++|++.+.+|+.+| ...+...+.+...+++...
T Consensus 70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 998642111 1234789999999999999999986 2233445566666655443
No 102
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.56 E-value=2.5e-13 Score=97.00 Aligned_cols=162 Identities=17% Similarity=0.246 Sum_probs=86.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (209)
+.+|.+|+|+|+|||||||+++.|+++++ ..+++.+. +++.+.... +.. ... .. .......+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~~-~~~-~~~-~~------~~~~~~~l~~~ 73 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHYG-YDK-QSR-IE------MALKRAKLAKF 73 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCCC-CCH-HHH-HH------HHHHHHHHHHH
Confidence 35688999999999999999999999985 55666544 444422111 000 000 00 00112223333
Q ss_pred HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (209)
Q Consensus 93 ~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (209)
+. ..+..||+|+.... .......+ ....+.++|||++|++++.+|...+ . . .......+........ .
T Consensus 74 l~-~~g~~VI~~~~~~~-~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~~---l--~-~~~~~~~~~~~~~~~~---~ 141 (176)
T PRK05541 74 LA-DQGMIVIVTTISMF-DEIYAYNR-KHLPNYFEVYLKCDMEELIRRDQKG---L--Y-TKALKGEIKNVVGVDI---P 141 (176)
T ss_pred HH-hCCCEEEEEeCCcH-HHHHHHHH-hhcCCeEEEEEeCCHHHHHHhchhh---H--H-HHHHcCcccccccCCC---c
Confidence 32 24678999975422 22222222 2334567999999999999997632 0 0 0000001111111111 2
Q ss_pred HHhhcCcEEEEcCC--CChHHHHHHHHHhcCc
Q 028388 173 YYEAKGKVRKIDAA--KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 173 ~~~~~~~~~~id~~--~~~ee~~~~i~~~i~~ 202 (209)
.+.....+ ++|++ .++++.+++|.+.+..
T Consensus 142 ~~~~~Ad~-vI~~~~~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 142 FDEPKADL-VIDNSCRTSLDEKVDLILNKLKL 172 (176)
T ss_pred ccCCCCCE-EEeCCCCCCHHHHHHHHHHHHHH
Confidence 22222334 45543 4888888888877643
No 103
>PRK06547 hypothetical protein; Provisional
Probab=99.55 E-value=1.8e-14 Score=101.96 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=75.0
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHH-HcCCCC--CHHHHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIV--PSEVTIKLLQK 91 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~i~~ 91 (209)
++....+++|+|.|++||||||+++.|++.++..+++.|+++... ..-......+...+ ..++.. +.+........
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~ 87 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-HGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGD 87 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-ccCChHHHHHHHHHHhCCCCceecCCCCCCCCCC
Confidence 455677899999999999999999999999999999998877532 11111111122222 122110 10000000000
Q ss_pred HHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
...-.....+|++|..........+.+ .....+.|||++|.+++.+|+..|
T Consensus 88 ~~~l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 88 WVSVEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred cEEeCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhc
Confidence 011113467889996433322222221 122338999999999999999988
No 104
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.55 E-value=3e-13 Score=94.46 Aligned_cols=164 Identities=16% Similarity=0.242 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHHHH-------
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSEVT------- 85 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~------- 85 (209)
++.+|+|+||+|+||||+++.|-+.. -..+|.+...|...++ +.. ..+.+.+.+..+.++.+..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 78999999999999999999999988 4455555555554332 111 11455555555444433222
Q ss_pred -HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388 86 -IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 86 -~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (209)
...++..+. .+..+|+|= ..+-...... ..+....||+.+|. +++.+|+.+| ..+..+.+.+|+...
T Consensus 82 ~~~~ve~~~~--~G~~vildI---d~qGa~qvk~--~~p~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~~a 150 (191)
T COG0194 82 SREPVEQALA--EGKDVILDI---DVQGALQVKK--KMPNAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLENA 150 (191)
T ss_pred cHHHHHHHHh--cCCeEEEEE---ehHHHHHHHH--hCCCeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHHHH
Confidence 445555555 478888872 1222223332 33345577777755 6788888855 567889999998877
Q ss_pred HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...... ... -+.+++|. +++..+..+...+..
T Consensus 151 ~~Ei~~----~~~-fdyvivNd--d~e~a~~~l~~ii~a 182 (191)
T COG0194 151 KKEISH----ADE-FDYVIVND--DLEKALEELKSIILA 182 (191)
T ss_pred HHHHHH----HHh-CCEEEECc--cHHHHHHHHHHHHHH
Confidence 664322 222 33556665 678888888877654
No 105
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.55 E-value=5.9e-13 Score=98.41 Aligned_cols=173 Identities=21% Similarity=0.274 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCchH--HHHHHHHHcCC---------------
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKEGK--------------- 78 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~--------------- 78 (209)
.+++|.|.|++||||||+++.|++++|+.+++.|.+++.... .+-... ....+......
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLN 82 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEEC
Confidence 368999999999999999999999999999999998886432 122111 12222111100
Q ss_pred --CCCHH----H-------H--HHHHHHHHH-----hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388 79 --IVPSE----V-------T--IKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138 (209)
Q Consensus 79 --~~~~~----~-------~--~~~i~~~~~-----~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~ 138 (209)
.+... . . ...+.+.+. -....++|++|.. ... . .....++.|||++|.+...
T Consensus 83 ~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~--~~~--~----vl~~a~~~ifl~a~~e~R~ 154 (225)
T PRK00023 83 GEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRD--IGT--V----VFPDAELKIFLTASAEERA 154 (225)
T ss_pred CcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecC--hhe--E----EeCCCCEEEEEECCHHHHH
Confidence 00000 0 0 001111111 1124679999841 111 1 2233678999999999887
Q ss_pred HHHhhc--cCCCCCCcHHHHHHHHHHHHh--hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 139 RRILNR--NQGREDDNVETIRKRFKVFLE--SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 139 ~R~~~r--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
+|...+ ..+. ....+...+.+..... .... ...+...+..+++|+ ..+++++++.|.+++..
T Consensus 155 ~Rr~~~~~~~g~-~~~~~~~~~~i~~rD~~~~~r~-~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~ 221 (225)
T PRK00023 155 ERRYKELQAKGI-SVDFEDLLAEIKERDERDSNRA-VAPLKPAEDALLLDTSGLSIEEVVEKILALVEE 221 (225)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHHhhhhcc-cccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 776555 1121 2334444443332211 1110 111122233467776 56999999999999864
No 106
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3.1e-13 Score=93.23 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=96.7
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (209)
.+.+.+|.+|+++|.+||||||+|..|.++|- ..++--+|-+|+.+..+-.+...-+... .. ...-+.
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~en--iR------RvaevA 88 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIEN--IR------RVAEVA 88 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHH--HH------HHHHHH
Confidence 34566789999999999999999999999983 3445556778887665443332211110 00 011222
Q ss_pred HHHHhcCCCeEEEeCCCCCH-HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchh
Q 028388 91 KAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP 169 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (209)
..+.. .+..+|+. |.+-. +.++...++......+-||++||.++|.+|=-+. -+.+.....-.+...
T Consensus 89 kll~d-aG~iviva-~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKG----------LYkKAr~GeI~~fTG 156 (197)
T COG0529 89 KLLAD-AGLIVIVA-FISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKG----------LYKKARAGEIKNFTG 156 (197)
T ss_pred HHHHH-CCeEEEEE-eeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchH----------HHHHHHcCCCCCCcC
Confidence 22221 24444443 33333 3333444422223567999999999999994433 222211111122222
Q ss_pred HHHHHhhc-CcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 170 VVQYYEAK-GKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 170 ~~~~~~~~-~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
+...|+.+ ++-+.+|+ ..++++.+++|..++..
T Consensus 157 id~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 157 IDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred CCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence 33334444 35567776 57999999999988753
No 107
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.54 E-value=9.1e-13 Score=92.62 Aligned_cols=161 Identities=17% Similarity=0.248 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH---------------HHH-
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---------------EVT- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~- 85 (209)
.++.++|..||||||+++.+. .+|+++|+.|.+.|+.+..+......+.+.++..-..++ +..
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 578999999999999999996 899999999999999998877666666655543211111 111
Q ss_pred ------------HHHHHHHHHh-cCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 86 ------------IKLLQKAMEE-SGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 86 ------------~~~i~~~~~~-~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
..+..+.... ..+ ..+|+| .|..++. .+. ..+..+|.+.||.++..+|+..| ++.
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~----~~~~~tvvV~cd~~~Ql~Rl~~R----d~l 149 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLL----KICHKTVVVTCDEELQLERLVER----DEL 149 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHH----hheeeEEEEEECcHHHHHHHHHh----ccc
Confidence 1222222111 124 455566 4544443 111 12456899999999999999988 255
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
+.++..+|+...- |+.+..+.. -+++|++.+++++.+++...+
T Consensus 150 se~dAe~Rl~sQm----p~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~ 192 (225)
T KOG3220|consen 150 SEEDAENRLQSQM----PLEKKCELA--DVVIDNNGSLEDLYEQVEKVL 192 (225)
T ss_pred cHHHHHHHHHhcC----CHHHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence 6667776655422 222222322 267888889999988877654
No 108
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.53 E-value=3.1e-13 Score=98.76 Aligned_cols=169 Identities=17% Similarity=0.250 Sum_probs=96.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHH-----
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE----- 83 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~----- 83 (209)
.+.++.+|+|+||||||||||++.|.+.. ..+ +......+..... +.. ....+...+..+.++...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence 45678899999999999999999998643 111 1110111110000 000 011222222222222110
Q ss_pred ---HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec--CHHHHHHHHhhccCCCCCCcHHHHHH
Q 028388 84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNRNQGREDDNVETIRK 158 (209)
Q Consensus 84 ---~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~--~~~~~~~R~~~r~~~~~~~~~~~~~~ 158 (209)
.....+...+. .+..+|+|... .....+.+ ..|+.++++.+ +.+++.+|+..| + .+..+.+.+
T Consensus 88 ~YGt~~~~i~~~~~--~g~~vi~~~~~---~g~~~l~~---~~pd~~~if~~pps~e~l~~Rl~~R--~--~~~~~~~~~ 155 (206)
T PRK14738 88 YYGVPKAPVRQALA--SGRDVIVKVDV---QGAASIKR---LVPEAVFIFLAPPSMDELTRRLELR--R--TESPEELER 155 (206)
T ss_pred eecCCHHHHHHHHH--cCCcEEEEcCH---HHHHHHHH---hCCCeEEEEEeCCCHHHHHHHHHHc--C--CCCHHHHHH
Confidence 11345565555 47788888543 33333433 34667655555 456789999987 3 345667878
Q ss_pred HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
|+..+...... .....++++|++.++++++++|.+.|...
T Consensus 156 Rl~~~~~e~~~-----~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 156 RLATAPLELEQ-----LPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHHHhc-----ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 87766543221 11235788999889999999999988654
No 109
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.52 E-value=1e-12 Score=92.56 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=87.2
Q ss_pred EcCCCCChhHHHHHHHHHhCCceecHhHHHHHH-HH---cCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH---HhcCCC
Q 028388 27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK---SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM---EESGND 99 (209)
Q Consensus 27 ~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~ 99 (209)
.|+|||||||+++.|++.++..+++.|.+.... +. .+...... ........+.+.. ....+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD-----------DRKPWLQALNDAAFAMQRTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh-----------hHHHHHHHHHHHHHHHHHcCCc
Confidence 499999999999999999999999886542111 00 01100000 0001111111111 111244
Q ss_pred eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCc
Q 028388 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179 (209)
Q Consensus 100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (209)
.+|+ ...........+.. ...+..+|||+||++++.+|+..| .......+.+..++..+. +. -.....
T Consensus 70 ~viv-~s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~a~~~vl~~Q~~~~e----p~---~~~e~~ 137 (163)
T PRK11545 70 SLIV-CSALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQ----EP---GADETD 137 (163)
T ss_pred eEEE-EecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHcC----CC---CCCCCC
Confidence 4555 33333444444443 344567999999999999999999 322234444443332221 11 011125
Q ss_pred EEEEcCCCChHHHHHHHHHhcCc
Q 028388 180 VRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 180 ~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
++.+|++.+++++.+.+...+++
T Consensus 138 ~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 138 VLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHH
Confidence 78899998999999999888754
No 110
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.51 E-value=3.5e-12 Score=96.78 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=101.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCC------chHHHHHHHHH--cCCCCCHH-------
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS------ENGTMIQNMIK--EGKIVPSE------- 83 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~------- 83 (209)
.+|++|+|.|++||||||+|..|+++||...+-..|.+++.+.... .........+. .....+++
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 4789999999999999999999999999985444577776554311 01000111111 00011111
Q ss_pred ----H----HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhc--cCCCCCCc
Q 028388 84 ----V----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR--NQGREDDN 152 (209)
Q Consensus 84 ----~----~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~~~~~~R~~~r--~~~~~~~~ 152 (209)
. +...+.+.+. ++..+|++|....+.+...+.. ..... +.+++. .+.+...+|...| ...++.
T Consensus 170 ~~~~~v~~gi~~~I~~~~~--~g~s~IiEGvhl~P~~i~~~~~-~~~~~-i~~~l~i~~ee~h~~RF~~R~~~~~r~~-- 243 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALK--EGISVIIEGVHIVPGFIKEKYL-ENPNV-FMFVLTLSDEEAHKARFYARARVSRRPA-- 243 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH--hCCcEEEecCCCCHHHHHHhhh-cCCCE-EEEEEEECCHHHHHHHHHHHHhhhCCch--
Confidence 1 1334444444 4899999998877777665444 33333 344555 4668899999998 222222
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
+.+.+.+........-+.+...+.+ +-++|+. ++++..+.+.+.+....
T Consensus 244 -~~y~~~~~~ir~iq~~l~~~a~~~~-ip~I~n~-~i~~s~~~~~~~i~~~~ 292 (301)
T PRK04220 244 -ERYLKNFEIIREINDYIVEKAKKHG-VPVIENI-SIEETVDKILEIITERL 292 (301)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCc-cHHHHHHHHHHHHHHHH
Confidence 2222333333333334445455544 3445554 67777777776665544
No 111
>PTZ00301 uridine kinase; Provisional
Probab=99.51 E-value=1.2e-13 Score=100.60 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
.++|.|.|+|||||||+|+.|+++++ ..+++.|++++.. ..-. ....-...+.....+..+.+.+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~-~~~~-~~~~~~~~~d~p~a~D~~~l~~~l~~L~ 80 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQ-SNIP-ESERAYTNYDHPKSLEHDLLTTHLRELK 80 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCc-ccCC-HHHhcCCCCCChhhhCHHHHHHHHHHHH
Confidence 47999999999999999999988873 2356666665432 1000 0000000011112222333333332222
Q ss_pred Hh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCC
Q 028388 94 EE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGR 148 (209)
Q Consensus 94 ~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r---~~~~ 148 (209)
.. .+...+|+||+..... ..+.. ..|+.||+++|.+++..|...| ++|+
T Consensus 81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~----l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~ 154 (210)
T PTZ00301 81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN----EMDCLIFVDTPLDICLIRRAKRDMRERGR 154 (210)
T ss_pred cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH----hCCEEEEEeCChhHHHHHHHhhhHHhcCC
Confidence 11 1246778899654211 12222 3578999999999999999998 2333
Q ss_pred CCCcHHHHHHHHHHHHhhchhHHHHH----hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 149 EDDNVETIRKRFKVFLESSLPVVQYY----EAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..+...+ .|.....+....| ....++++ ......+.....+.+.|..
T Consensus 155 ---~~e~v~~---~~~~~v~~~~~~~I~p~k~~ADiIi-~~~~~~~~~~~~~~~~~~~ 205 (210)
T PTZ00301 155 ---TFESVIE---QYEATVRPMYYAYVEPSKVYADIIV-PSWKDNSVAVGVLRAKLNH 205 (210)
T ss_pred ---CHHHHHH---HHHHhhcccHHHHcCccccCCcEEE-cCCCcchHHHHHHHHHHHH
Confidence 3333333 2444444444333 22234544 4443444555555454443
No 112
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.51 E-value=1.7e-13 Score=98.66 Aligned_cols=146 Identities=18% Similarity=0.280 Sum_probs=85.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCc---eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
.++.+|.|.|++||||||+|+.|.+.++.. .++.|+++... .... ......--+.+..-...+++.+.+......
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~-~~~~-~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQ-SHLP-FEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccch-hhcC-HhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 345899999999999999999999999844 77888877643 1111 100000011122222233333333333321
Q ss_pred ----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCc
Q 028388 96 ----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDN 152 (209)
Q Consensus 96 ----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~ 152 (209)
.+...+|++|+....+ +.+.. -.|+.||+++|.+++..|...| ...|-.+
T Consensus 84 ~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~----~~d~kIfvdtd~D~RliRri~RD~~~rg~~- 156 (218)
T COG0572 84 KPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD----LMDLKIFVDTDADVRLIRRIKRDVQERGRD- 156 (218)
T ss_pred CcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh----hcCEEEEEeCCccHHHHHHHHHHHHHhCCC-
Confidence 1257889999754333 12222 3678999999999998888888 2222222
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhh
Q 028388 153 VETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
.+.. +.+|....+|.++.|-+
T Consensus 157 ~e~v---i~qy~~~vkp~~~~fIe 177 (218)
T COG0572 157 LESV---IEQYVKTVRPMYEQFIE 177 (218)
T ss_pred HHHH---HHHHHHhhChhhhhccC
Confidence 2333 33455566666655543
No 113
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.50 E-value=3.4e-14 Score=95.26 Aligned_cols=106 Identities=30% Similarity=0.478 Sum_probs=60.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----cCC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE----SGN 98 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~ 98 (209)
+|+|.|+|||||||+|+.|++++|+++++.|+++....... .............+.+...+.. ...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIE----------RDDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCH----------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccc----------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 58999999999999999999999999999999432110000 0000000011223333333332 246
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
..+|+||... ... .. . ....+.+||+.++.+++.+|+.+|
T Consensus 71 ~~~ii~g~~~-~~~-~~--~--~~~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 71 DNWIIDGSYE-SEM-EI--R--LPEFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp -EEEEECCSC-HCC-HS--C--CHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred CeEEEeCCCc-cch-hh--h--hhcCCEEEEEECCCHHHHHHHHHH
Confidence 7899999432 111 11 1 112357899999888554444444
No 114
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.49 E-value=1.7e-13 Score=98.58 Aligned_cols=163 Identities=21% Similarity=0.375 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHc---CCchH----HHHHHHHHcCCCCCHH--------
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS---GSENG----TMIQNMIKEGKIVPSE-------- 83 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~-------- 83 (209)
+++|+|.||+||||+|+++.|.+.+. +..+-. ...+...+. +..+. +.+...+..+.+++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~-~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVS-HTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeee-ecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 46899999999999999999998862 222211 222222111 11111 4444444444433321
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (209)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (209)
.....+...+. .++.+|+|..+....+ +.. ....| ++||+. .+.+++.+|+..| + .+..+.+.+++..
T Consensus 81 t~~~~i~~~~~--~~~~~ild~~~~~~~~---l~~-~~~~~-~vIfi~~~s~~~l~~rl~~R--~--~~~~~~i~~rl~~ 149 (184)
T smart00072 81 TSKETIRQVAE--QGKHCLLDIDPQGVKQ---LRK-AQLYP-IVIFIAPPSSEELERRLRGR--G--TETAERIQKRLAA 149 (184)
T ss_pred cCHHHHHHHHH--cCCeEEEEECHHHHHH---HHH-hCCCc-EEEEEeCcCHHHHHHHHHhc--C--CCCHHHHHHHHHH
Confidence 22456666665 4789999977544433 333 33334 688887 5667799999976 3 3456778888776
Q ss_pred HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..... ..+. .-.. +|.++ ++++.++++.+.|..
T Consensus 150 a~~~~----~~~~-~fd~-~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 150 AQKEA----QEYH-LFDY-VIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHH----hhhc-cCCE-EEECc-CHHHHHHHHHHHHHh
Confidence 43321 1121 1233 44444 789999999888754
No 115
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.49 E-value=3.4e-13 Score=98.78 Aligned_cols=173 Identities=13% Similarity=0.193 Sum_probs=88.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (209)
|.++++.+|+|.|++||||||+++.|+..++ ..+++.|+++... ... .........+........+.+.+.+...
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l 78 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQ-SHL-EMAERKKTNFDHPDAFDNDLLYEHLKNL 78 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccCh-hhC-CHHHhcCCCCCCccHhHHHHHHHHHHHH
Confidence 3456778999999999999999999999886 5567776654321 000 0000000000000111111222222222
Q ss_pred HHh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCC
Q 028388 93 MEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRE 149 (209)
Q Consensus 93 ~~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~ 149 (209)
... .....+|+||.+..... .+. ..++++||+++|.+++..|...| ...+.
T Consensus 79 ~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~----~~~d~~I~v~~~~~~~l~R~~~R~~~~rg 152 (207)
T TIGR00235 79 KNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR----DLMDLKIFVDTPLDIRLIRRIERDINERG 152 (207)
T ss_pred HCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH----HhCCEEEEEECChhHHHHHHHHHHHHhhC
Confidence 110 12467888987543221 122 24679999999999999998887 11122
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHH----hhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYY----EAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
... +....+ |.....+.+..+ ....+ ++++++...+..++.+...|+
T Consensus 153 ~~~-~~~~~~---~~~~~~~~~~~~i~~~~~~Ad-~vi~~~~~~~~~~~~~~~~~~ 203 (207)
T TIGR00235 153 RSL-DSVIDQ---YRKTVRPMYEQFVEPTKQYAD-LIIPEGGRNEVAINVLDTKIK 203 (207)
T ss_pred CCH-HHHHHH---HHHhhhhhHHHhCcccccccE-EEEcCCCCchHHHHHHHHHHH
Confidence 222 222222 323333333222 22223 455555566666666555543
No 116
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.49 E-value=1.5e-12 Score=106.16 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
|.|+|+|+|||||||+++.|++.+|+++++.|+++.+. .+....+.+.. .++....+...+.+++.... ...+
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~--~g~~i~~i~~~---~Ge~~fr~~E~~~l~~l~~~--~~~V 73 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR--EGRSVRRIFEE---DGEEYFRLKEKELLRELVER--DNVV 73 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH--cCCCHHHHHHH---hhhHHHHHHHHHHHHHHhhc--CCEE
Confidence 35999999999999999999999999999999887664 22222222221 12222233334444444321 2223
Q ss_pred EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCc
Q 028388 102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179 (209)
Q Consensus 102 i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (209)
|-.| .+.....+..+.. ..+|||+++++++.+|+..+ +|+..... .+++...++...++++ .
T Consensus 74 is~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~lY~---~--- 137 (488)
T PRK13951 74 VATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRPLLREG--KERIREIWERRKQFYT---E--- 137 (488)
T ss_pred EECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHHHh---c---
Confidence 3233 2233344444432 35899999999999999876 55532111 1233333333344433 2
Q ss_pred EEEEcC-CCChHHHHHHH
Q 028388 180 VRKIDA-AKPVAEVFDAV 196 (209)
Q Consensus 180 ~~~id~-~~~~ee~~~~i 196 (209)
+..+|+ +.+++++++++
T Consensus 138 ~~~IDt~~~s~~e~~~~i 155 (488)
T PRK13951 138 FRGIDTSKLNEWETTALV 155 (488)
T ss_pred ccEEECCCCCHHHHHHHH
Confidence 135655 55676766555
No 117
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.49 E-value=1.7e-12 Score=110.04 Aligned_cols=172 Identities=19% Similarity=0.240 Sum_probs=101.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCch--HHHHHHHHHc-------------CCCC-
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMIKE-------------GKIV- 80 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~~~~-------------~~~~- 80 (209)
.++|.|.||+||||||+++.|+++||+.+++.+.+++.... .+-.. ...+.+.... ++.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT 521 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence 56899999999999999999999999999999999998722 22111 1112221111 0000
Q ss_pred ----------------CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028388 81 ----------------PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (209)
Q Consensus 81 ----------------~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~ 143 (209)
....++..+....++. ...++|+||-- .-....+..++-|||++++++..+|+.+
T Consensus 522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRd--------igtvv~p~a~~kifl~a~~~~Ra~Rr~~ 593 (661)
T PRK11860 522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRD--------MGTVIFPDAALKVFLTASAEARAERRYK 593 (661)
T ss_pred hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCC--------CccEECCCCCeEEEEECChhHHHHHHHH
Confidence 0111122222222211 24578999741 0010345678999999999998888876
Q ss_pred c--cCCCCCCcHHHHHHHHH--HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 144 R--NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 144 r--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
. ..+. ....+.+.+.+. .+.+..+... .+....+.++||+ ..+++++++.|.+++.+
T Consensus 594 ~~~~~~~-~~~~~~~~~~~~~Rd~~d~~R~~~-pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 594 QLISKGI-SANIADLLADLEARDARDTQRSVA-PLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHhCCC-CCCHHHHHHHHHHHhHHhhcCCCC-CCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4 2222 223333333332 2333322221 1233345567766 66999999999999865
No 118
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.49 E-value=1.7e-12 Score=106.00 Aligned_cols=102 Identities=22% Similarity=0.355 Sum_probs=80.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
.+..|.+|+++|+|||||||+|+.+++..++.+++.|.+- . .......+...+.
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~-- 418 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALD-- 418 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHh--
Confidence 4567889999999999999999999999999999997641 1 1112344555555
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+..||+|.......++..|..+ ...-+..++++++|.+++.+|+..|
T Consensus 419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 419 QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 47899999988888877777765 3333556999999999999999999
No 119
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.48 E-value=1.2e-12 Score=93.81 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCH--------HHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------EVTI 86 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~ 86 (209)
.+|+|.||+||||||+++.|++.++...+......++...+ +.. ....+...+..+..+.. ....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 57999999999999999999998765444433333322111 000 01122222222222111 1113
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
..+...+. .+..+|+|.. ......+.. ....+..++++.++.+.+.+|+..| + ....+.+.+++..+...
T Consensus 82 ~~i~~~~~--~g~~vi~d~~---~~~~~~~~~-~~~~~~~i~~~~~~~e~~~~Rl~~r--~--~~~~~~i~~rl~~~~~~ 151 (180)
T TIGR03263 82 SPVEEALA--AGKDVLLEID---VQGARQVKK-KFPDAVSIFILPPSLEELERRLRKR--G--TDSEEVIERRLAKAKKE 151 (180)
T ss_pred HHHHHHHH--CCCeEEEECC---HHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHHHHHHHHHH
Confidence 45555555 4788999953 333334444 3334545666677789999999977 3 23556777777665432
Q ss_pred chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
. . +....+.++.| + +.+++.+++...+.
T Consensus 152 ~----~-~~~~~d~~i~n-~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 152 I----A-HADEFDYVIVN-D-DLEKAVEELKSIIL 179 (180)
T ss_pred H----h-ccccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence 1 1 12223444444 4 78999999988764
No 120
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.47 E-value=4e-12 Score=93.02 Aligned_cols=169 Identities=18% Similarity=0.261 Sum_probs=95.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCC--------H
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVP--------S 82 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~--------~ 82 (209)
|..+.+|+|.|++||||||+++.|++.++..++......++...+ +.. ....+......+.... .
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 346789999999999999999999998863333322222221110 000 0122222222111110 0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV 162 (209)
Q Consensus 83 ~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (209)
......+...+. .+..+|+|..+ .....+.. ....+..++++.++.+++.+|+..| + .+..+.+.+++..
T Consensus 82 ~~~~~~i~~~l~--~g~~vi~dl~~---~g~~~l~~-~~~~~~~I~i~~~s~~~l~~Rl~~R--~--~~~~~~i~~rl~~ 151 (205)
T PRK00300 82 GTPRSPVEEALA--AGKDVLLEIDW---QGARQVKK-KMPDAVSIFILPPSLEELERRLRGR--G--TDSEEVIARRLAK 151 (205)
T ss_pred cCcHHHHHHHHH--cCCeEEEeCCH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHhc--C--CCCHHHHHHHHHH
Confidence 011334555554 47788998543 33334444 2333333555567789999999987 3 3466778888777
Q ss_pred HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
+..... ++.. ...+++|+ +.+++..++...+...
T Consensus 152 ~~~~~~----~~~~-~d~vi~n~--~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 152 AREEIA----HASE-YDYVIVND--DLDTALEELKAIIRAE 185 (205)
T ss_pred HHHHHH----hHHh-CCEEEECC--CHHHHHHHHHHHHHHH
Confidence 654332 2222 33445544 7999999999988765
No 121
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.46 E-value=1.6e-11 Score=93.48 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN 98 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 98 (209)
..+|+|+|++||||||+++.|+ ..|+.+++.- +..++..+++..... ...
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~---------------------------~~~L~~~l~~~~~~~~~~~~ 57 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE-DLGYYCVDNL---------------------------PPSLLPKLVELLAQSGGIRK 57 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HcCCeEECCc---------------------------CHHHHHHHHHHHHhcCCCCC
Confidence 4589999999999999999996 5687776431 111112222222211 134
Q ss_pred CeEEEeCCCCCH--HHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 99 DKFLIDGFPRNE--ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 99 ~~~i~dg~~~~~--~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
-.+++|...... .....+..+ .......+|||+++++++.+|+..+.+.++........+.+...++...+ +.
T Consensus 58 ~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~p----l~ 133 (288)
T PRK05416 58 VAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAP----LR 133 (288)
T ss_pred eEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhh----HH
Confidence 577788643221 122222222 22223368999999999999997531123322112222223222222222 23
Q ss_pred hcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 176 AKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 176 ~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
...++ +||+ +.+++++.++|.+.+..
T Consensus 134 ~~ADi-vIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 134 ERADL-VIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred HhCCE-EEECCCCCHHHHHHHHHHHHhc
Confidence 33444 4555 66999999999998854
No 122
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=6e-12 Score=91.57 Aligned_cols=179 Identities=17% Similarity=0.217 Sum_probs=104.9
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC------CchHHHHHHHHHcCC--CCCHHHH---
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------SENGTMIQNMIKEGK--IVPSEVT--- 85 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~--- 85 (209)
.+..|.+|+|.|+||+||||+|..||.+||...+-..|.+|+.+..- +-+.......|+.-. ......+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF 164 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF 164 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence 45679999999999999999999999999988877778888876651 111111111121111 0011011
Q ss_pred -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCC---
Q 028388 86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGRED--- 150 (209)
Q Consensus 86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~~~~~~R~~~r~~~~~~--- 150 (209)
...+.+++. ++..+|++|....+...+.- ......+.++|. .+++....|.-.| .+..
T Consensus 165 ~dqa~~V~~GI~~VI~RAi~--eG~~lIIEGvHlVPg~i~~~---~~~~n~~~~~l~i~dee~Hr~RF~~R--~~~t~~~ 237 (299)
T COG2074 165 EDQASAVMVGIEAVIERAIE--EGEDLIIEGVHLVPGLIKEE---ALGNNVFMFMLYIADEELHRERFYDR--IRYTHAS 237 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHh--cCcceEEEeeeeccccccHh---hhccceEEEEEEeCCHHHHHHHHHHH--HHHHhcc
Confidence 334555555 48899999854333222110 111223444444 4667789999998 2221
Q ss_pred CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.+...+.+++..++....-+.+..++.+ +=+++++ +.+++.+++.+.+.+..
T Consensus 238 rp~~Ryl~yf~EiR~I~Dyl~~~Are~g-VPvI~n~-di~etv~~il~~i~~~~ 289 (299)
T COG2074 238 RPGGRYLEYFKEIRTIHDYLVERAREHG-VPVIEND-DIDETVDRILEDIRKRT 289 (299)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcC-CCeeccc-cHHHHHHHHHHHHHHHH
Confidence 2334455555555444433444444444 4556665 78899999888876644
No 123
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.46 E-value=3e-12 Score=92.07 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=88.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHH-HHHHHHHcCCCCCHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKA 92 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ 92 (209)
.++.+|+|+|+|||||||+++.|+..+. ..+++.++ +++.+..+..+.. .....+ ..+.. +...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~--------~~~~~-~~~~ 85 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENI--------RRIGE-VAKL 85 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHH--------HHHHH-HHHH
Confidence 5678999999999999999999999872 34566544 4443322211111 000000 00011 1122
Q ss_pred HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 93 ~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
+. ..+..||+|.......+...+..+....+..+|||++|.+++.+|...+ ...+. . .+..+.. .
T Consensus 86 ~~-~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~-~-------~~~~l~~----~ 152 (184)
T TIGR00455 86 FV-RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARN-G-------EIKGFTG----I 152 (184)
T ss_pred HH-cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhc-C-------CccCccc----c
Confidence 22 2489999998666666666666632223456899999999999993311 00000 0 0000100 1
Q ss_pred HHHHhh-cCcEEEEcC-CCChHHHHHHHHHhc
Q 028388 171 VQYYEA-KGKVRKIDA-AKPVAEVFDAVKAVF 200 (209)
Q Consensus 171 ~~~~~~-~~~~~~id~-~~~~ee~~~~i~~~i 200 (209)
...|.. ....++||+ ..++++++++|.+.|
T Consensus 153 ~~~y~~p~~adl~Idt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 153 DSPYEAPENPEVVLDTDQNDREECVGQIIEKL 184 (184)
T ss_pred cCCCCCCCCCcEEEECCCCCHHHHHHHHHHhC
Confidence 111232 233467775 468999999887654
No 124
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.46 E-value=5.8e-12 Score=88.77 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHcC----Cch---------HHHHHHHHHcCCCCCHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG----SEN---------GTMIQNMIKEGKIVPSEVTI 86 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~ 86 (209)
.+|++.|+|.|||||+|+.|++.+. |.+++.|.+...+.... ..+ +...... ...+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRL--------YAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHH--------HHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHH--------HHHHH
Confidence 6899999999999999999999996 56788877666432211 000 0101000 01112
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHH-HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRNEEN-RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~~~~-~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~ 165 (209)
..+..... .+..||+|.......+ .+.+.++....+.+.|-+.||.+++.+|-..| +....... + .++..
T Consensus 74 ~~iaa~a~--aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R--gDR~~G~a---~--~q~~~ 144 (174)
T PF07931_consen 74 AAIAAMAR--AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR--GDRPIGLA---A--WQAEH 144 (174)
T ss_dssp HHHHHHHH--TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH--TSSSTTHH---H--HHTTG
T ss_pred HHHHHHHh--CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc--CCcchHHH---H--HHHhh
Confidence 22222222 4899999987666665 44554533345667999999999999999998 32111111 1 01111
Q ss_pred hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388 166 SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (209)
Q Consensus 166 ~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~ 201 (209)
... ....+ +.+|+ ..++++++++|.+.++
T Consensus 145 Vh~------~~~YD-leVDTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 145 VHE------GGRYD-LEVDTSATSPEECAREILARLE 174 (174)
T ss_dssp GGT------T---S-EEEETTSS-HHHHHHHHHTT--
T ss_pred ccc------CCCCC-EEEECCCCCHHHHHHHHHHHhC
Confidence 111 11223 45666 5699999999988763
No 125
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.45 E-value=2.7e-12 Score=97.01 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
++|+|+|.|||||||+|+.|++.+. ..+++.+.+. +.... +..... +......+...+++.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~~~------Ek~~R~~l~s~v~r~ls-- 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADSKK------EKEARGSLKSAVERALS-- 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--GGG------HHHHHHHHHHHHHHHHT--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhchhh------hHHHHHHHHHHHHHhhc--
Confidence 4899999999999999999999863 3455543333 11111 110000 00001223455555554
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
....||+|+.++-...+..+..+ ....+..+||++++.+.+.+|..+|
T Consensus 70 ~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R 119 (270)
T PF08433_consen 70 KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR 119 (270)
T ss_dssp T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT
T ss_pred cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc
Confidence 36899999966555544444333 4445567999999999999999999
No 126
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.45 E-value=3.5e-13 Score=115.06 Aligned_cols=171 Identities=18% Similarity=0.235 Sum_probs=98.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc----CCchHH----------HHHHHHHc------------
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSENGT----------MIQNMIKE------------ 76 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~----~~~~~~----------~~~~~~~~------------ 76 (209)
+|.|.|||||||||+|+.|++++|+.+++.+.+++..... +..... .+......
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDSP 82 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCCc
Confidence 7999999999999999999999999999999998875321 111111 11111100
Q ss_pred -----CCCCC-----------------HHHHHHHH---HHHHHhcCC--------CeEEEeCCCCCHHHHHHHHHhcCCC
Q 028388 77 -----GKIVP-----------------SEVTIKLL---QKAMEESGN--------DKFLIDGFPRNEENRAAFEAVTKIE 123 (209)
Q Consensus 77 -----~~~~~-----------------~~~~~~~i---~~~~~~~~~--------~~~i~dg~~~~~~~~~~~~~~~~~~ 123 (209)
+..+. ...+++.+ ++.+..... .++|+||.- .-....+.
T Consensus 83 ~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRd--------igtvv~p~ 154 (712)
T PRK09518 83 GVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRD--------ITTVVAPD 154 (712)
T ss_pred EEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCc--------cceEEecC
Confidence 00000 00011111 111111111 278888741 11113455
Q ss_pred CcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH--HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhc
Q 028388 124 PEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVF 200 (209)
Q Consensus 124 ~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i 200 (209)
.++-|||++++++..+|+..+ ... ...+.+.+.+. .+.+. +.. .++....+.+++|+ ..+++++++.|...+
T Consensus 155 a~~K~~l~A~~~~Ra~Rr~~~--~~~-~~~~~~~~~~~~Rd~~d~-R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~i 229 (712)
T PRK09518 155 AEVRILLTAREEVRQARRSGQ--DRS-ETPGVVLEDVAARDEADS-KVT-SFLSAADGVTTLDNSDLDFDETLDLLIGLV 229 (712)
T ss_pred CCeEEEEECCHHHHHHHHHHh--hhc-CCHHHHHHHHHHHhhhcc-ccc-CCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 789999999999999998877 111 33333333332 23333 222 22333445567776 779999999999998
Q ss_pred Ccchhh
Q 028388 201 TPKDEK 206 (209)
Q Consensus 201 ~~~~~~ 206 (209)
......
T Consensus 230 ~~~~~~ 235 (712)
T PRK09518 230 EDAIEE 235 (712)
T ss_pred Hhhhhh
Confidence 776544
No 127
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.45 E-value=3e-11 Score=96.31 Aligned_cols=178 Identities=13% Similarity=0.139 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCc------hHHHHH---HHHHcCCC------CCHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE------NGTMIQ---NMIKEGKI------VPSE 83 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~------~~~~ 83 (209)
.+|.+|+++|+|||||||++..|+.++++..+...|.+++.+...-. ...... .....+.. ....
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence 46999999999999999999999999999855333666665444111 000000 11111110 1111
Q ss_pred H--------------HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhcc-CC
Q 028388 84 V--------------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRN-QG 147 (209)
Q Consensus 84 ~--------------~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~-~~ 147 (209)
. +...+++.+. .+..+|+||............. .. ...+.|++.+ +.++..+|+..|. ..
T Consensus 333 vi~Gf~~q~~~V~~gi~~vI~r~l~--eG~SvIIEGVHl~P~~i~~~~~-~~-~~~i~flv~isdeeeH~~Rf~~Ra~~~ 408 (475)
T PRK12337 333 VLRGFRDQVQQVAVGLGAIQERSAQ--EGTSLVLEGVHLVPGYLRHPYQ-AG-ALVVPMLVTLPDEALHRRRFELRDRET 408 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cCCeEEEECCCCCHHHHHHHHh-cC-CceEEEEEEECCHHHHHHHHHHHhhhc
Confidence 1 1333444444 4899999997666655442222 22 2223345555 5677999999991 11
Q ss_pred CCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
....+...+.+.+...+....-+.+...+.+ +-+|++. ++++..+.+.+.|.+
T Consensus 409 ~~~r~~~ky~~~f~~IR~IQdyLv~~A~~~~-ipvI~n~-nid~tv~~~l~~i~~ 461 (475)
T PRK12337 409 GASRPRERYLRHFEEIRLIQDHLLRLARQEG-VPVLPGE-DLDESIDKALEVVLR 461 (475)
T ss_pred cCCCchhHHHHhHHHHHHHHHHHHHHHHHcC-CCeecCc-cHHHHHHHHHHHHHH
Confidence 1112334444444444433333344444433 4445553 667776666655544
No 128
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.44 E-value=6.8e-12 Score=89.53 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=87.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHH-HHHHHHcCCCCCHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQKA 92 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ 92 (209)
.++.+|+|+|+|||||||+++.|+..+. ..+++.|.+ ++.+..+..+... ...... ....+...
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~---------~~~~~a~~ 71 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR---------RIGFVANL 71 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH---------HHHHHHHH
Confidence 3567999999999999999999999883 556777544 3333321111100 000000 01112222
Q ss_pred HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 93 ~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
+. ..+..+++|+..........+.. .. ....+|||++|.+++.+|..+. ...+.. .+........+
T Consensus 72 ~~-~~g~~vi~~~~~~~~~~~~~l~~-~~-~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~--------~i~~~~~~~~~- 139 (175)
T PRK00889 72 LT-RHGVIVLVSAISPYRETREEVRA-NI-GNFLEVFVDAPLEVCEQRDVKGLYAKARAG--------EIKHFTGIDDP- 139 (175)
T ss_pred HH-hCCCEEEEecCCCCHHHHHHHHh-hc-CCeEEEEEcCCHHHHHHhCcccHHHHHHcC--------CCCCCcccCCC-
Confidence 22 24677888875333444444544 22 3346999999999999995210 001100 00001111112
Q ss_pred HHHHh-hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 171 VQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 171 ~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
++. ....+.+.+++.++++++++|.+.|..
T Consensus 140 --~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 140 --YEPPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred --CCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 122 123455555677999999999988853
No 129
>PRK06696 uridine kinase; Validated
Probab=99.43 E-value=1e-12 Score=97.30 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---CCce--ecHhHHHHHHHHc---C--Cc--------hHHHHHHHHHc---
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTH--LSAGDLLRAEIKS---G--SE--------NGTMIQNMIKE--- 76 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~--i~~~~~~~~~~~~---~--~~--------~~~~~~~~~~~--- 76 (209)
..+|.+|+|.|++||||||+|+.|++.+ |..+ ++.|+++...... + .. ....+.+.+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 5578999999999999999999999999 4444 4577776433110 0 00 01111111111
Q ss_pred -CC--CCC---HHHH-HHHHHHHHH-hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 77 -GK--IVP---SEVT-IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 77 -~~--~~~---~~~~-~~~i~~~~~-~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
+. .+. .+.. ......... ......+|+||...... .+. ...|++||+++|.+++.+|+..|
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~---~~~----~~~d~~i~v~~~~e~~~~R~~~R 167 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRP---ELR----DLWDYKIFLDTDFEVSRRRGAKR 167 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhh---hHH----hhCCEEEEEECCHHHHHHHHHHh
Confidence 00 000 0100 011110111 11245788998532211 111 23579999999999999999988
No 130
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.43 E-value=2.4e-12 Score=88.83 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHH-HHHHcCCCCCHHHHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQ-NMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
+|.+|+|+|.|||||||||+.|.++|. ..+++. |.++..+..+-.+...-+ +.+. ....+...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll 70 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL 70 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence 578999999999999999999999993 445655 555544333222211111 1110 012222233
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028388 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (209)
Q Consensus 94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~ 143 (209)
.. .+..+|++......+.++...........+.||++||.+++.+|-.+
T Consensus 71 ~~-~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~K 119 (156)
T PF01583_consen 71 AD-QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPK 119 (156)
T ss_dssp HH-TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTT
T ss_pred Hh-CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCch
Confidence 32 47888888654445555555542211245799999999999999543
No 131
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.42 E-value=7.3e-12 Score=91.09 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=84.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--H
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--Q 90 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~ 90 (209)
..+|.+|+|+|++||||||+++.|+..+ +..+++.|++.... .....+. .....+....+. .
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~-~~~~~~~----------~~~~~~~~~~l~~~a 89 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGL-CSDLGFS----------DADRKENIRRVGEVA 89 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhh-hhcCCcC----------cccHHHHHHHHHHHH
Confidence 4678999999999999999999999987 34566665543222 1111000 000011112221 1
Q ss_pred HHHHhcCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCCCCCcHHHHHHHHHHHHhh
Q 028388 91 KAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGREDDNVETIRKRFKVFLES 166 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r---~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
..+. ..+..+|. .+.. ....++.+..+......++|||++|.+++.+|.. | ...+. +. +..+...
T Consensus 90 ~~~~-~~G~~VI~-~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~-~~-------~~~l~~~ 158 (198)
T PRK03846 90 KLMV-DAGLVVLT-AFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP-KGLYKKARA-GE-------IRNFTGI 158 (198)
T ss_pred HHHh-hCCCEEEE-EeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc-hhHHHHhhc-CC-------ccCcccc
Confidence 1121 12555554 4443 3456666666311222348999999999999932 2 00110 00 0011111
Q ss_pred chhHHHHHh--hcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 167 SLPVVQYYE--AKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 167 ~~~~~~~~~--~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
...|+ .... +.+|+ +.++++++++|.+.+..
T Consensus 159 ----r~~Y~~p~~ad-~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 159 ----DSVYEAPESPE-IHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred ----cccCCCCCCCC-EEEECCCCCHHHHHHHHHHHHHH
Confidence 11144 2233 45664 67999999999988754
No 132
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.40 E-value=7e-12 Score=107.64 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~ 60 (209)
++|.|.|||||||||+|+.||++|++.+++.|.++|...
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 489999999999999999999999999999999999874
No 133
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.39 E-value=2.7e-13 Score=91.72 Aligned_cols=106 Identities=28% Similarity=0.401 Sum_probs=57.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hcCC
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME----ESGN 98 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~ 98 (209)
|+|+|+|||||||+|+.|+++++ ..+...... +......-............+....++..... ....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 78999999999999999999982 222222121 11110000011122233334433333333322 2347
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEE-EEEecCHHHHHHHHhhc
Q 028388 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNR 144 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~-i~L~~~~~~~~~R~~~r 144 (209)
..+|+|+........ ...... |+|+||++++.+|+..|
T Consensus 74 ~~~iid~~~~~~~~~--------~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 74 RNIIIDGILSNLELE--------RLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp SCEEEEESSEEECET--------TEEEESSEEEE--HHHHHHHHHCT
T ss_pred CcEEEecccchhccc--------ccceeeEEEEECCHHHHHHHHHhC
Confidence 889999864222110 011122 99999999999999988
No 134
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.39 E-value=1.1e-12 Score=93.80 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=69.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh------
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE------ 95 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------ 95 (209)
+|.|.|+|||||||+|+.|++.+ +..+++.|+++...- ... ....-...++.......+.+.+.+......
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~-~~~-~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~ 78 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPED-EIP-VDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKF 78 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcc-cCC-hHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCc
Confidence 58999999999999999999999 688999988876431 000 000000001111112223333333222211
Q ss_pred ------------------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 96 ------------------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 96 ------------------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.....+|+||+...... .+. ...|+.||+++|.+++.+|...|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~--~l~----~l~D~~Ifvd~~~d~~~~Rr~~R 151 (187)
T cd02024 79 LRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK--PLV----DLFDIRYFLRVPYETCKRRREAR 151 (187)
T ss_pred ccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH--HHH----hhcCceeEecCCHHHHHHHHHHc
Confidence 12457899997432211 122 24789999999999999999998
No 135
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.39 E-value=5.3e-12 Score=91.89 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=63.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---- 95 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 95 (209)
+|.|.|++||||||+++.|+..+ +..+++.|+++...-.. .........+........+.+...+......
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 78 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHE--ELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccc--cHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence 58999999999999999999987 36778887766332110 0000000000111112222222223221110
Q ss_pred ------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 96 ------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 96 ------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.....+|+||....... .+ ...+|.+||+++|.+++.+|...|
T Consensus 79 ~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~--~~----~~~~d~~i~v~~~~~~~~~R~~~R 139 (198)
T cd02023 79 IPVYDFKTHSRLKETVTVYPADVIILEGILALYDK--EL----RDLMDLKIFVDTDADVRLIRRIER 139 (198)
T ss_pred ccccccccCcccCCceecCCCCEEEEechhhccch--hH----HhhcCeEEEEECChhHHHHHHHHH
Confidence 12356777775322211 11 123579999999999988888777
No 136
>PRK07667 uridine kinase; Provisional
Probab=99.38 E-value=2.3e-12 Score=93.32 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=73.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHc----CCchH---------HHHH----HHHHcC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKS----GSENG---------TMIQ----NMIKEG 77 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~----~~~~~---------~~~~----~~~~~~ 77 (209)
+..+|.|+|+|||||||+|+.|++.++ ..+++.|+++...... ..... ..+. ..+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 447999999999999999999999884 4588898877654321 11110 0000 011111
Q ss_pred CCCCHHHHHHHHHH----HHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 78 KIVPSEVTIKLLQK----AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 78 ~~~~~~~~~~~i~~----~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
+.+..+........ .........+|+||..... ..+.. .+|.+||+++|++++.+|+.+| .....
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~~----~~d~~v~V~~~~~~~~~R~~~r----~~~~~ 164 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWRD----FFHYMVYLDCPRETRFLRESEE----TQKNL 164 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHHh----hceEEEEEECCHHHHHHHHhcc----cHhHH
Confidence 11111110000000 0111124778899864221 12222 3689999999999999999976 33444
Q ss_pred HHHHHHH
Q 028388 154 ETIRKRF 160 (209)
Q Consensus 154 ~~~~~~~ 160 (209)
+.+++++
T Consensus 165 ~~~~~r~ 171 (193)
T PRK07667 165 SKFKNRY 171 (193)
T ss_pred HHHHHHh
Confidence 5555543
No 137
>COG0645 Predicted kinase [General function prediction only]
Probab=99.37 E-value=1.2e-10 Score=80.35 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH----HHHHHHHHHHHh-c
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----VTIKLLQKAMEE-S 96 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~-~ 96 (209)
.++++.|.|||||||+|+.|++.+++..+..|.+. +.+.+...... .....++.. ....+....... .
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~ir-k~L~g~p~~~r------~~~g~ys~~~~~~vy~~l~~~A~l~l~ 74 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIR-KRLFGVPEETR------GPAGLYSPAATAAVYDELLGRAELLLS 74 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHH-HHhcCCccccc------CCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999996654 44344111100 001112111 112222222211 2
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+.+||+|+.+....++.....+ ...-+...|.+.++.+++..|+..|
T Consensus 75 ~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR 124 (170)
T COG0645 75 SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR 124 (170)
T ss_pred CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence 49999999987777777766654 2223455799999999999999988
No 138
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.36 E-value=1.1e-11 Score=102.76 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=89.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC------ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH--H
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--L 89 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i 89 (209)
-.++.+|+|+|+|||||||+++.|+++++. .+++.| .+++.+.....+...-++. ....+ +
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~----------~~~~l~~~ 457 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDL----------NILRIGFV 457 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHH----------HHHHHHHH
Confidence 346779999999999999999999999986 777775 4455433222111111110 00111 1
Q ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhch
Q 028388 90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL 168 (209)
Q Consensus 90 ~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 168 (209)
...+. ..+.++|+|........+..+..+ .......+|||++|.+++.+|..+. ...... ...+..+.....
T Consensus 458 a~~v~-~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~---Ll~~~~---~~~i~~l~~~R~ 530 (568)
T PRK05537 458 ASEIT-KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKG---LYAKAR---EGKIKGFTGISD 530 (568)
T ss_pred HHHHH-hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccc---ccccch---hchhhccccccc
Confidence 22122 247899999643333333333332 1112235899999999999996432 100000 011112222222
Q ss_pred hHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 169 PVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 169 ~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
+ ++.....-+.+|+ ..++++++++|...|..
T Consensus 531 ~---yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 531 P---YEPPANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred c---ccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 2 2321222356665 46899999999988754
No 139
>COG4639 Predicted kinase [General function prediction only]
Probab=99.36 E-value=2.3e-11 Score=82.35 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=77.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (209)
+.++++.|+|||||||+++.. ..+...++.+++-...-. . .+. +.....+....+.+.+.++..+. .+..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~--~-~~~---e~sqk~~~~~~~~l~~~l~qrl~--~Gk~ 71 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGV--S-ASK---ENSQKNDELVWDILYKQLEQRLR--RGKF 71 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhh--c-hhh---hhccccHHHHHHHHHHHHHHHHH--cCCe
Confidence 357999999999999999984 567888888775543310 0 000 00011112223445666666666 5899
Q ss_pred EEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 101 FLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.|+|++...++++..+.++ ...-....|+++.|.+.|.+|.+.|
T Consensus 72 tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 72 TIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred EEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 9999998888877776665 3334456899999999999999866
No 140
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.33 E-value=1.6e-12 Score=94.30 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=63.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC---------ceecHhHHHHHHHHcCCchHHHHHH-HHHcCCCCCHHHHHHHHHHH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGY---------THLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVPSEVTIKLLQKA 92 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~---------~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~ 92 (209)
+|.|+|++||||||+|+.|++.|+. .+++.++++........ .+..... .+........+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHH
Confidence 6899999999999999999999972 24555554433211000 0000000 00111222334444444433
Q ss_pred HHh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 93 MEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 93 ~~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
... .+...+|+||........ +. .-.|+.|||+++.++++.|...|
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~--l~----~l~D~~ifld~~~~~~l~Rri~R 147 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE--LR----DLFDLKIFLDADEDLRLERRIQR 147 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC--HG----GG-SEEEEEEE-HHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee--ec----ccceeEEEecccHHHHHHHHhhh
Confidence 211 124678899864332111 11 23679999999999988888888
No 141
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.32 E-value=3.6e-12 Score=92.75 Aligned_cols=118 Identities=21% Similarity=0.366 Sum_probs=65.5
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC-------CHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-------PSEVTI 86 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 86 (209)
...+|.++++.|+|||||||++..+.+.+ ++.+|+.|++ +...+ .+...... ..... ...+..
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p---~~~~~~~~---~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHP---DYDELLKA---DPDEASELTQKEASRLAE 83 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGST---THHHHHHH---HCCCTHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhcc---chhhhhhh---hhhhhHHHHHHHHHHHHH
Confidence 45789999999999999999999999987 6788888664 33211 11111110 00000 011224
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHH-HHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRNEENRA-AFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~-~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+++..+. .+..+|+|+......... .+..+ ..... .++++.+|++..+.|+..|
T Consensus 84 ~~~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 84 KLIEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQR 141 (199)
T ss_dssp HHHHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHH
Confidence 44555555 478999999777665554 33333 33332 3788899999999999999
No 142
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.32 E-value=7e-11 Score=81.96 Aligned_cols=109 Identities=20% Similarity=0.200 Sum_probs=66.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CC--ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--HHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--QKAMEE 95 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~ 95 (209)
+|+|+|+|||||||+++.|++.+ +. .+++. +.+++.+.....+... . ..+....+. ...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~- 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLA- 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHH-
Confidence 47899999999999999999998 53 34554 4454433221111100 0 011111111 11122
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028388 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~ 143 (209)
..+..+|+|........+..+..+....+..++||++|.+++.+|..+
T Consensus 69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 247889999866666666666653223455699999999999999654
No 143
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.32 E-value=3e-10 Score=85.17 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hcCC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---ESGN 98 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~ 98 (209)
.+|+|+|.+||||||..+.| +-+||.+|+. +|..++.++++.... ....
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 47999999999999999999 5588888853 333333344433321 1124
Q ss_pred CeEEEeCCCCCH-H-HHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 99 DKFLIDGFPRNE-E-NRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 99 ~~~i~dg~~~~~-~-~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
-.+++|--.... . ....+..+ .....-.++||+|+.+++++|...-.+..+-.......+.+...++. +....
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~----L~~lr 129 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKEREL----LEPLR 129 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHH----HHHHH
Confidence 566788432211 1 11122222 22233359999999999999999862223322222233334444444 34446
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..+++++..++.++.++-+.|.+.+..
T Consensus 130 ~~Ad~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 130 ERADLVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred HhCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 666665555678999999999988753
No 144
>PHA03132 thymidine kinase; Provisional
Probab=99.30 E-value=9.9e-11 Score=96.04 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=68.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCC-HH--------------
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVP-SE-------------- 83 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-------------- 83 (209)
.++|+|+|+.||||||+++.|++.++..++...+=......-.......+.+....+. ... ..
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pfl 336 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPFR 336 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHH
Confidence 5789999999999999999999998533322100000000000112222333222111 011 11
Q ss_pred HHHHHHHHH---HHh-----cCCCeEEEeCCCCCHHH-----------------HHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388 84 VTIKLLQKA---MEE-----SGNDKFLIDGFPRNEEN-----------------RAAFEAVTKIEPEFVLFFDCSEEEME 138 (209)
Q Consensus 84 ~~~~~i~~~---~~~-----~~~~~~i~dg~~~~~~~-----------------~~~~~~~~~~~~~~~i~L~~~~~~~~ 138 (209)
.....++.. ... ..+..||+|.++.+-.- ...+..+....||++|||+++++++.
T Consensus 337 ~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~al 416 (580)
T PHA03132 337 ALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEENL 416 (580)
T ss_pred HHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHHH
Confidence 111111111 111 23789999987643211 11112112246899999999999999
Q ss_pred HHHhhccCCCCCC
Q 028388 139 RRILNRNQGREDD 151 (209)
Q Consensus 139 ~R~~~r~~~~~~~ 151 (209)
+|+.+| ++..+
T Consensus 417 kRIkkR--gR~~E 427 (580)
T PHA03132 417 RRVKKR--GRKEE 427 (580)
T ss_pred HHHHhc--Cchhh
Confidence 999999 55433
No 145
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.29 E-value=5.3e-11 Score=100.69 Aligned_cols=163 Identities=19% Similarity=0.172 Sum_probs=91.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (209)
..+|.+|+++|+|||||||+|+.|+++++ +.+++.|+ ++..+..+..+...-+ ...+..+...+
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~a 525 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEVA 525 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHHH
Confidence 34689999999999999999999999983 46677744 5544332211111110 01111111111
Q ss_pred H-HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388 93 M-EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 93 ~-~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
. ....+..+|+|........++.+..+....+..+|||++|.+++.+|. .| +...... ...+..+.....
T Consensus 526 ~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r--~L~~~~~---~~~l~~l~~~r~--- 596 (632)
T PRK05506 526 RLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PK--GLYAKAR---AGEIKNFTGIDS--- 596 (632)
T ss_pred HHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Cc--chhhhcc---cccccccccccc---
Confidence 1 112478899997655556666555522122457999999999999994 23 1110000 011111111111
Q ss_pred HHHhh-cCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388 172 QYYEA-KGKVRKIDA-AKPVAEVFDAVKAVFT 201 (209)
Q Consensus 172 ~~~~~-~~~~~~id~-~~~~ee~~~~i~~~i~ 201 (209)
.|.. ....+.+|+ +.+++++++.|.+.|.
T Consensus 597 -~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~ 627 (632)
T PRK05506 597 -PYEAPENPELRLDTTGRSPEELAEQVLELLR 627 (632)
T ss_pred -CCCCCCCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence 1332 223456665 6799999999998874
No 146
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.29 E-value=2.1e-11 Score=89.90 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=63.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME- 94 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 94 (209)
+|.|.|++||||||+|+.|+..++ ..+++.|+++...... ...+. .+..........+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~-~~~~~--~~~~g~p~~~d~~~l~~~L~~l~~g 77 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKEL-IERGL--MDRKGFPESYDMEALLKFLKDIKSG 77 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHH-HHhhh--hhcCCCcccCCHHHHHHHHHHHHCC
Confidence 588999999999999999999883 3567777765322100 00000 000000111222222222222211
Q ss_pred -----------------------hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 95 -----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 95 -----------------------~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
..+...+|+||..........+.. .....|+.||+++|.+++.+|+.+|
T Consensus 78 ~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~-l~~~~D~~ifvd~~~~~~~~rl~~R 149 (220)
T cd02025 78 KKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLF-VSDFFDFSIYVDADEDDIEKWYIKR 149 (220)
T ss_pred CCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhh-HHHhCCeEEEEECCHHHHHHHHHHH
Confidence 012457889996433221111111 1124678999999999988777777
No 147
>PLN02348 phosphoribulokinase
Probab=99.29 E-value=2.6e-11 Score=94.89 Aligned_cols=132 Identities=15% Similarity=0.237 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC--------------------ceecHhHHHHHHHHcCCchHHHHHHHHHcCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
.+|.+|.|.|++||||||+++.|++.++. .+++.|+++......-...+. . ..+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~---t-~ldP~ 122 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGV---T-ALDPR 122 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCC---c-cCCcc
Confidence 57889999999999999999999999963 367787765311000000000 0 00001
Q ss_pred CCCHHHHHHHHHHHHHh---------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388 79 IVPSEVTIKLLQKAMEE---------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (209)
Q Consensus 79 ~~~~~~~~~~i~~~~~~---------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~ 137 (209)
....+.+.+.+...... .+...+|++|....... . ....+|+.||++++.++.
T Consensus 123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e-----~-lr~l~D~~IyVd~~~dvr 196 (395)
T PLN02348 123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE-----R-VRDLLDFSIYLDISDDVK 196 (395)
T ss_pred cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc-----c-ccccCcEEEEEECCHHHH
Confidence 11122333333322211 12467888985322111 1 223468999999999999
Q ss_pred HHHHhhccCCCCCCcHHHHHHHH
Q 028388 138 ERRILNRNQGREDDNVETIRKRF 160 (209)
Q Consensus 138 ~~R~~~r~~~~~~~~~~~~~~~~ 160 (209)
..|..+|...+.....+...+++
T Consensus 197 l~RRI~RD~~eRG~S~EeV~~~i 219 (395)
T PLN02348 197 FAWKIQRDMAERGHSLESIKASI 219 (395)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHH
Confidence 88877771111123445555544
No 148
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.27 E-value=1.3e-10 Score=85.01 Aligned_cols=150 Identities=17% Similarity=0.258 Sum_probs=78.2
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCC----CCCHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK----IVPSEVTIK 87 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 87 (209)
....+.+|+++|.||.|||++|+.|+..|+ ..+++.++.=|+....... . .++...+ ..-..+...
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~-~----~ff~p~n~~~~~~R~~~a~~ 82 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD-A----EFFDPDNEEAKKLREQIAKE 82 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--G----GGGSTT-HHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccc-c----ccCCCCChHHHHHHHHHHHH
Confidence 345677999999999999999999999885 4668888866666433111 0 0000000 000111122
Q ss_pred H---HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec---CHHHHHHHHhhcc-C------CCCCCcHH
Q 028388 88 L---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC---SEEEMERRILNRN-Q------GREDDNVE 154 (209)
Q Consensus 88 ~---i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~---~~~~~~~R~~~r~-~------~~~~~~~~ 154 (209)
+ +...+....+++.|+|+...+.+.+..+.+........++|+++ +++.+.+.+..-. . ..++...+
T Consensus 83 ~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~ 162 (222)
T PF01591_consen 83 ALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIE 162 (222)
T ss_dssp HHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHH
Confidence 2 22233444589999999999988887766641111134666665 4444555554431 1 11233557
Q ss_pred HHHHHHHHHHhhchhHH
Q 028388 155 TIRKRFKVFLESSLPVV 171 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (209)
++.+|+..|.....|+-
T Consensus 163 Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 163 DFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp HHHHHHHHHHTT-----
T ss_pred HHHHHHHhhcccccccc
Confidence 88889999988887774
No 149
>PRK05439 pantothenate kinase; Provisional
Probab=99.26 E-value=1.7e-11 Score=93.91 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=70.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL 89 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 89 (209)
...+|.+|.|+|+|||||||+|+.|++.++ ..+++.|+++...-.-. ..+ .....+....+..+.+.+.+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~-~~~--l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLE-ERG--LMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHh-hhh--ccccCCCcccccHHHHHHHH
Confidence 446789999999999999999999998764 35688888764321100 000 00000111222233333333
Q ss_pred HHHHHh------------------------cCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 90 QKAMEE------------------------SGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 90 ~~~~~~------------------------~~~~~~i~dg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
...... .....+|++|.... ......+.. .....|+.||+++|.+++.+|+..|
T Consensus 159 ~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~-l~d~~D~~IfVda~~~~~~~w~i~R 237 (311)
T PRK05439 159 SDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLF-VSDFFDFSIYVDADEDLIEKWYIER 237 (311)
T ss_pred HHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchh-hHHhCCEEEEEECCHHHHHHHHHHH
Confidence 322210 12457788885422 211101111 1224689999999999998888777
No 150
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.25 E-value=1.5e-11 Score=87.81 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=65.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-- 95 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 95 (209)
+|+|.|+|||||||+|+.|++.+ +..+++.|+++..........+ .......+..+.+.+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g-----~~d~~~~~d~~~l~~~l~~l~~~~~ 75 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDG-----NYDFESILDLDLLNKNLHDLLNGKE 75 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCC-----CCCCCccccHHHHHHHHHHHHCCCe
Confidence 58999999999999999999997 4578999998874300000000 00000011223333333332211
Q ss_pred ---------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH-HHHHHhhc
Q 028388 96 ---------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNR 144 (209)
Q Consensus 96 ---------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~-~~~R~~~r 144 (209)
.+...+|+||...... .+.. -.|+.||++++.+. +..|...|
T Consensus 76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~----~~d~~I~vd~~~~~~rl~rri~R 139 (179)
T cd02028 76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRS----LLDIRVAVSGGVHLNRLLRRVVR 139 (179)
T ss_pred eecccceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHh----hcCEEEEEeCCccHHHHHHHHHH
Confidence 1246788999654332 2222 26899999999998 66666655
No 151
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=99.24 E-value=5.8e-10 Score=78.25 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=42.1
Q ss_pred cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhhchhHHHHHh--hcCcEEEEcCCCCh
Q 028388 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYE--AKGKVRKIDAAKPV 189 (209)
Q Consensus 120 ~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~ 189 (209)
....+|.+|||.++|++|.+|+..| +|.++ .+-.+.+.++..++.|.- ...+. ...+++++|++...
T Consensus 150 ~~v~~dgiIYLrasPetc~~Ri~~R--~R~EE~gipL~YLe~LH~~HE~WLi-~~~f~~lq~vpvLVLDad~n~ 220 (244)
T KOG4235|consen 150 MDVSLDGIIYLRASPETCYKRIYLR--AREEEKGIPLKYLEALHELHESWLI-KLHFPNLQAVPVLVLDADHNM 220 (244)
T ss_pred cccccceEEEeecChHHHHHHHHHH--hhhhhcCCcHHHHHHHHHHHHHHHH-HHhhhHhhcCCeEEEecccch
Confidence 3467899999999999999999999 33322 333333344444444322 22233 34478999976544
No 152
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.1e-09 Score=74.60 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=97.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCc----eecHhHHHHHHHHcCCchH-----HHHHHHHHcCCC-CCHHH-----
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT----HLSAGDLLRAEIKSGSENG-----TMIQNMIKEGKI-VPSEV----- 84 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~----~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~----- 84 (209)
...+|++.||+|+||-|+.......+... ++.- -+.+.. ..+.+.. .++...-..+.+ +++..
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrR-vITRpa-~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Y 81 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRR-VITRPA-DAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSY 81 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEE-EecccC-CCCcccccccCHHHHHHHhhcCceeEEehhcCccc
Confidence 46799999999999999999999888422 2110 111111 1111111 111111111100 00000
Q ss_pred -HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388 85 -TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 85 -~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (209)
+-.-|...+. .+..+|+.|.-....+.. + . +.--+++.+.++++++.+|+..| || ++.+.+..|+..-
T Consensus 82 gip~eId~wl~--~G~vvl~NgSRa~Lp~ar---r-r-y~~Llvv~ita~p~VLaqRL~~R--GR--Es~eeI~aRL~R~ 150 (192)
T COG3709 82 GIPAEIDLWLA--AGDVVLVNGSRAVLPQAR---R-R-YPQLLVVCITASPEVLAQRLAER--GR--ESREEILARLARA 150 (192)
T ss_pred cCchhHHHHHh--CCCEEEEeccHhhhHHHH---H-h-hhcceeEEEecCHHHHHHHHHHh--cc--CCHHHHHHHHHhh
Confidence 0122344444 478899988643333322 2 2 22346999999999999999998 66 4567777776553
Q ss_pred HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
... ....++++.||+++.++...+++...+..
T Consensus 151 a~~-------~~~~~dv~~idNsG~l~~ag~~ll~~l~~ 182 (192)
T COG3709 151 ARY-------TAGPGDVTTIDNSGELEDAGERLLALLHQ 182 (192)
T ss_pred ccc-------ccCCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence 331 13356899999999999999999888864
No 153
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.24 E-value=1.5e-10 Score=89.92 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=72.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHc---CCchH---HHHHH--------H---HHcCCC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKS---GSENG---TMIQN--------M---IKEGKI 79 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~---~~~~~---~~~~~--------~---~~~~~~ 79 (209)
+.+++|+|||||||+++.|++.+. ..+++.||++.+.... +.... ..+++ . +..|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 368999999999999999998875 3489999988422111 11000 11111 1 111222
Q ss_pred CCH------HHH--------------------HHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEE
Q 028388 80 VPS------EVT--------------------IKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLF 129 (209)
Q Consensus 80 ~~~------~~~--------------------~~~i~~~~~~--~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~ 129 (209)
... ... ...+.+.... .....+|+|+.+.....+..+..+ ....+..+||
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ 160 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF 160 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 111 111 1111122211 124578999877777666655554 3334557999
Q ss_pred EecCHHHHHHHHhhc
Q 028388 130 FDCSEEEMERRILNR 144 (209)
Q Consensus 130 L~~~~~~~~~R~~~r 144 (209)
+++|.+++.+|..+|
T Consensus 161 ld~ple~~l~RN~~R 175 (340)
T TIGR03575 161 LDCPVESCLLRNKQR 175 (340)
T ss_pred EeCCHHHHHHHHhcC
Confidence 999999999999988
No 154
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.24 E-value=1e-10 Score=86.93 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=66.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-----ce-ecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----TH-LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA 92 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (209)
.+|.+|.|.|++|||||||++.|+..+.. .+ ++.|++........ ..+ .............+.....+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~-~~g--~~~~~~~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLD-AHG--LRPRKGAPETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHH-hcc--cccccCCCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999998852 22 55555432210000 000 00000011111222222222222
Q ss_pred HHh------------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 93 MEE------------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 93 ~~~------------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
... .....+|+||....... ..+.. ....+|++||+++|.+++.+|+..|
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~-l~~~~D~vi~v~~~~~~~~~R~~~R 181 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRR-LAGLFDFTIFLDAPAEVLRERLVAR 181 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHH-HHhhCCEEEEEECCHHHHHHHHHHH
Confidence 110 02456788886543321 11121 1234689999999999999999988
No 155
>PRK15453 phosphoribulokinase; Provisional
Probab=99.21 E-value=1e-10 Score=87.79 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~ 57 (209)
+.++++|+|+|.|||||||+++.|++.++ ..+++.|++.+
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 35688999999999999999999998884 45677777664
No 156
>PRK07429 phosphoribulokinase; Provisional
Probab=99.20 E-value=2.6e-10 Score=88.50 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=33.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL 56 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~ 56 (209)
+.+|.+|.|.|++||||||+++.|++.++ ..+++.|+++
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 45789999999999999999999999987 5567777764
No 157
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=99.19 E-value=1.8e-09 Score=79.24 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hcCC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---ESGN 98 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~ 98 (209)
.+|+|+|.+|||||+-.+.| +-+||-+++. +|..++-++++-... ..+.
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 47999999999999999999 4588877743 333333333331111 1124
Q ss_pred CeEEEeCCCC----CH-HHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388 99 DKFLIDGFPR----NE-ENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (209)
Q Consensus 99 ~~~i~dg~~~----~~-~~~~~~~~~~~-~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (209)
-.+++|--.+ .. +....+.+ .. ..+ .++||+++.+++++|...-.+..+-.....+.+.+...++...|+
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~-~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL-- 129 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKD-NGDIDP-RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL-- 129 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHh-cCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH--
Confidence 5677883211 11 11222222 21 223 499999999999999997522333333333555555555655554
Q ss_pred HHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 173 ~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.+.+.+++..++.++.++.+.|...+..
T Consensus 130 --k~~A~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 130 --REIADLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred --HHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence 4444455555588999999999998875
No 158
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.19 E-value=4e-10 Score=79.48 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCc-----------------hHHHHHHHHHcCCCCC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSE-----------------NGTMIQNMIKEGKIVP 81 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 81 (209)
|..+|.|.|.+.|||||||+.|...+ |..+|+-||++...-.-... +...+.-.+......+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 45689999999999999999999988 57889988887654221000 1122222233323322
Q ss_pred HHHHHHHHHH--------H--HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 82 SEVTIKLLQK--------A--MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 82 ~~~~~~~i~~--------~--~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
. ....++.. . ......+.+++|||........ ....+..|++..|-+++.+|...|..-.+.+
T Consensus 83 ~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~------~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~ 155 (225)
T KOG3308|consen 83 E-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQ------VDLFDRIIMLTLDYETCKRRREARTYYPPDD 155 (225)
T ss_pred h-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchh------hhhhhhheeeeccHHHHHHhhcccccCCCCC
Confidence 2 11111111 1 1112267899999753221111 1124568999999999999999882111111
Q ss_pred cHHHHHH-HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 152 NVETIRK-RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 152 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
. ..+.- -+-.|.++... .. +........+|++.+-+..-.+|...+..
T Consensus 156 t-gyfd~~~~P~Y~~~~~~-~~-d~~~h~~~flngdvs~e~~~~~v~~~i~~ 204 (225)
T KOG3308|consen 156 T-GYFDPVVWPHYEKNFEE-AR-DRSRHDSLFLNGDVSEEKLDDKVNESINQ 204 (225)
T ss_pred C-ccccCccchHHHHHHHH-HH-hhcccceeeecccchhhhchhhhhhhhcc
Confidence 1 00000 00011111110 01 11112467888887777777777766643
No 159
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.17 E-value=1.7e-10 Score=82.91 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCch----HHHHHHHHHcCCCCCH--------H
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPS--------E 83 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~--------~ 83 (209)
++++|+|+||+|||||||++.|.+.++-.+ .......|....+ +..+ .+.+......+.++.. .
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 467899999999999999999998875211 1111122221110 1110 1222222222221110 0
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV 162 (209)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (209)
.....+...+. .+..+|+|.. ..-...+.. ....| ++||+.++ .+.+.+|+..| ..+..+.+.+++..
T Consensus 81 t~~~~i~~~~~--~gk~~il~~~---~~g~~~L~~-~~~~~-~~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~ 149 (183)
T PF00625_consen 81 TSKSAIDKVLE--EGKHCILDVD---PEGVKQLKK-AGFNP-IVIFIKPPSPEVLKRRLRRR----GDESEEEIEERLER 149 (183)
T ss_dssp EEHHHHHHHHH--TTTEEEEEET---HHHHHHHHH-CTTTE-EEEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHH
T ss_pred hccchhhHhhh--cCCcEEEEcc---HHHHHHHHh-cccCc-eEEEEEccchHHHHHHHhcc----ccccHHHHHHHHHH
Confidence 11455666666 4788888843 444555555 54444 58888766 57777777655 23455666666665
Q ss_pred HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..... ..+.. -..++.| + ++++++.+|.+.|..
T Consensus 150 ~~~~~----~~~~~-fd~vi~n-~-~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 150 AEKEF----EHYNE-FDYVIVN-D-DLEEAVKELKEIIEQ 182 (183)
T ss_dssp HHHHH----GGGGG-SSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHH----hHhhc-CCEEEEC-c-CHHHHHHHHHHHHHh
Confidence 54422 22222 2344444 3 799999999988753
No 160
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.17 E-value=1.8e-10 Score=87.73 Aligned_cols=122 Identities=14% Similarity=0.196 Sum_probs=67.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHH--HcCCchHHHHHHHHHcCCCCCHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEI--KSGSENGTMIQNMIKEGKIVPSEVTIK 87 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (209)
.+.+|.+|.|.|++||||||+++.|+..+. ..+++.|+++...- .... ..+.......+..+.+..
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-----~~~~~g~P~s~D~~~l~~ 132 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERN-----LMKKKGFPESYDMHRLVK 132 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcC-----CccccCCChhccHHHHHH
Confidence 356789999999999999999999877763 34567766554221 1000 000000111111122222
Q ss_pred HHHHHHH------------------------hcCCCeEEEeCCCCCHHHH-----HHHHHhcCCCCcEEEEEecCHHHHH
Q 028388 88 LLQKAME------------------------ESGNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEME 138 (209)
Q Consensus 88 ~i~~~~~------------------------~~~~~~~i~dg~~~~~~~~-----~~~~~~~~~~~~~~i~L~~~~~~~~ 138 (209)
.+..... ..+...+|++|........ ..+.. .....|+.|||++|.+++.
T Consensus 133 ~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~-~~d~~D~~IyvDa~~d~~~ 211 (290)
T TIGR00554 133 FLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVF-VSDFVDFSIYVDAEEDLLQ 211 (290)
T ss_pred HHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHH-HHHhCCEEEEEECCHHHHH
Confidence 2222111 0124677889864321110 01111 1235789999999999999
Q ss_pred HHHhhc
Q 028388 139 RRILNR 144 (209)
Q Consensus 139 ~R~~~r 144 (209)
+|..+|
T Consensus 212 ~w~i~R 217 (290)
T TIGR00554 212 TWYINR 217 (290)
T ss_pred HHHHHH
Confidence 888877
No 161
>PLN02772 guanylate kinase
Probab=99.17 E-value=1.4e-09 Score=85.41 Aligned_cols=169 Identities=20% Similarity=0.295 Sum_probs=95.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCch----HHHHHHHHHcCCCCCHH--------
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPSE-------- 83 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~-------- 83 (209)
+.++|+|+||+||||+||++.|.+.+.. ..++.....|..... +..+ .+.+...+..+.++...
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 4568999999999999999999887632 112222333332111 1000 02233333333332221
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (209)
...+.++..+. .++.+|+|- ...-...+.. ....+-.++++..+.+++.+|+..| +. ...+.+.+|+..+
T Consensus 214 Tsk~~V~~vl~--~Gk~vILdL---D~qGar~Lr~-~~l~~v~IFI~PPSlEeLe~RL~~R--Gt--eseE~I~kRL~~A 283 (398)
T PLN02772 214 TSIEAVEVVTD--SGKRCILDI---DVQGARSVRA-SSLEAIFIFICPPSMEELEKRLRAR--GT--ETEEQIQKRLRNA 283 (398)
T ss_pred ccHHHHHHHHH--hCCcEEEeC---CHHHHHHHHH-hcCCeEEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHH
Confidence 12556666666 478889883 3333444444 3334444455555689999999987 43 3567888888776
Q ss_pred HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...... ..+......+++| + ++++.++++.+.|..
T Consensus 284 ~~Ei~~--~~~~~~fD~vIvN-D-dLe~A~~~L~~iL~~ 318 (398)
T PLN02772 284 EAELEQ--GKSSGIFDHILYN-D-NLEECYKNLKKLLGL 318 (398)
T ss_pred HHHHhh--ccccCCCCEEEEC-C-CHHHHHHHHHHHHhh
Confidence 442110 0011122344444 4 799999999988754
No 162
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=99.10 E-value=3.3e-10 Score=67.93 Aligned_cols=60 Identities=20% Similarity=0.450 Sum_probs=44.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND 99 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (209)
+|+|+|+|||||||+++.|++.+ +..+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 47899999999999999999985 2333322
Q ss_pred eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec
Q 028388 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC 132 (209)
Q Consensus 100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~ 132 (209)
.+|+||+........ .. ....+|+.|||++
T Consensus 34 ~~I~eg~~~~~~~~~--~~-~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRD--AR-IRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHH--hh-ccccccEEEEEEe
Confidence 899999765444322 22 4567899999987
No 163
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.03 E-value=3.2e-09 Score=80.72 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL 56 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~ 56 (209)
+|.|+|++||||||+++.|+..++ ..+++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 488999999999999999998874 5567777654
No 164
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.00 E-value=4.8e-09 Score=78.30 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~ 57 (209)
+|+|+|++||||||+++.|++.++ ..+++.|++++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998874 46788877766
No 165
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.00 E-value=2.4e-08 Score=68.13 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (209)
|.+.++.|+.||||||+...+-..+ +..+|+.|.+..+.-+.... ...+.. ++ .....+...+. .+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~-~~~i~A----~r-----~ai~~i~~~I~--~~ 69 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPT-SAAIQA----AR-----VAIDRIARLID--LG 69 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCch-HHHHHH----HH-----HHHHHHHHHHH--cC
Confidence 5678889999999999988765544 47788897766655222221 111110 00 11223333333 47
Q ss_pred CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
.++.++.......-....... ......+.++.-.+.+..++|++.| ..|.++-+.+.++.|+. +...-+..++.
T Consensus 70 ~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~---rsle~l~~~l~ 146 (187)
T COG4185 70 RPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYR---RSLELLAQALT 146 (187)
T ss_pred CCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHH---HHHHHHHHHHh
Confidence 888888654443333333332 3333333444445778999999999 55666667777777643 33333334445
Q ss_pred hcCcEEEEcCC
Q 028388 176 AKGKVRKIDAA 186 (209)
Q Consensus 176 ~~~~~~~id~~ 186 (209)
-.+...+.|++
T Consensus 147 l~dr~~IydNS 157 (187)
T COG4185 147 LADRATIYDNS 157 (187)
T ss_pred hcceeEEecCC
Confidence 55566777764
No 166
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.99 E-value=2.9e-09 Score=87.40 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-CceecHhHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDL 55 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-~~~i~~~~~ 55 (209)
..+.+|.|.|++||||||+++.|+..+. ...|+.|++
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 3568999999999999999999999884 456777665
No 167
>PHA00729 NTP-binding motif containing protein
Probab=98.95 E-value=7.2e-09 Score=75.77 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCc--eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
......|+|+|+||+||||+|..|++.++.. .+..++..... .. ..-.++.+.+...+......
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--~~------------~~~fid~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--VQ------------NSYFFELPDALEKIQDAIDN 79 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--CC------------cEEEEEHHHHHHHHHHHHhc
Confidence 3445679999999999999999999987521 12222111100 00 01122333344445444432
Q ss_pred cC-CCeEEEeCCCCCHHH---H----H---HHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 96 SG-NDKFLIDGFPRNEEN---R----A---AFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 96 ~~-~~~~i~dg~~~~~~~---~----~---~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.. ...+|+|++..-... - . .+..+....+++++++.++++.+.+++..|
T Consensus 80 ~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 80 DYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred CCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 22 234689973211111 1 0 111112235788999999999999999998
No 168
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.8e-08 Score=68.04 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=66.9
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL 89 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 89 (209)
+.+...++.+|+|+|.+||||||+|-.|.+.|. ..|+--+|=+|.-+..+-.+...-+ . .-+..+
T Consensus 24 q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR--~---------ENIRRi 92 (207)
T KOG0635|consen 24 QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDR--N---------ENIRRI 92 (207)
T ss_pred HHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhh--h---------hhHHHH
Confidence 456677899999999999999999999998873 4555555656655444322221111 0 001111
Q ss_pred HHHHHhcCCCeEE-EeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028388 90 QKAMEESGNDKFL-IDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (209)
Q Consensus 90 ~~~~~~~~~~~~i-~dg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~ 142 (209)
-.........++| +..+... ...++....+......+-||.++|.+++.+|--
T Consensus 93 geVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDP 147 (207)
T KOG0635|consen 93 GEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDP 147 (207)
T ss_pred HHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCc
Confidence 1111111122333 3332211 223344454333445668999999999998843
No 169
>PHA03136 thymidine kinase; Provisional
Probab=98.86 E-value=3.9e-07 Score=71.16 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.0
Q ss_pred CCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 121 ~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
...||.+|||+.+++++.+|+.+| +|+.+
T Consensus 189 ~p~pD~IIyL~l~~e~~~~RI~kR--gR~~E 217 (378)
T PHA03136 189 EPHGGNIVIMDLDECEHAERIIAR--GRPGE 217 (378)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHc--CCCcc
Confidence 356899999999999999999999 66554
No 170
>PLN02165 adenylate isopentenyltransferase
Probab=98.85 E-value=2.1e-08 Score=77.40 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~ 55 (209)
.++.+|+|.||+||||||++..|++.++..+++.|..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4566999999999999999999999999999998765
No 171
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.84 E-value=9.4e-09 Score=76.38 Aligned_cols=122 Identities=12% Similarity=0.196 Sum_probs=66.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHH--HHHcCCchHHHHHHHHHcCCCCCHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRA--EIKSGSENGTMIQNMIKEGKIVPSEVTI 86 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (209)
.....|++|.|.|+||+||||+|+.|+..+. ...+.+|-+.-. .+.. ..+....+..+.+....+.
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~-----~glm~rKGfPeSyD~~~ll 151 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDE-----RGLMARKGFPESYDVAALL 151 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhh-----ccccccCCCCccccHHHHH
Confidence 3456789999999999999999999988773 222333222110 0000 0000001111122222222
Q ss_pred HHHHHH-------------------HHh-----cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028388 87 KLLQKA-------------------MEE-----SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (209)
Q Consensus 87 ~~i~~~-------------------~~~-----~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~ 142 (209)
+++... +.. .....+|++|........ .+.. ...-+|+.||++++.+.+.+|+.
T Consensus 152 ~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~-~sdffDfSIyvDa~~~~le~wyi 229 (283)
T COG1072 152 RFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLF-LSDFFDFSIYVDADEELLEERYI 229 (283)
T ss_pred HHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-cccc-ccccceEEEEecCCHHHHHHHHH
Confidence 222211 110 114577888854333221 1111 33457899999999999999999
Q ss_pred hc
Q 028388 143 NR 144 (209)
Q Consensus 143 ~r 144 (209)
.|
T Consensus 230 ~R 231 (283)
T COG1072 230 ER 231 (283)
T ss_pred HH
Confidence 99
No 172
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.79 E-value=8.3e-09 Score=74.16 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC-----ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
++|+|+|.|+|||||.|..|.+.|.- .+.-.+|-. -.+....-++....+... ...+...+++.+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~l------Rg~L~S~v~R~Ls-- 72 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKAL------RGKLRSAVDRSLS-- 72 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHH------HHHHHHHHHhhcc--
Confidence 57999999999999999999998841 222222211 010111111111111100 1122344444443
Q ss_pred CCCeEEEeCCCCCHHHH-HHHHHh-cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 97 GNDKFLIDGFPRNEENR-AAFEAV-TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~-~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+..||+|.-.+-.-.+ +.+... .......+||..+|.+.+.+-...|
T Consensus 73 k~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~ 122 (281)
T KOG3062|consen 73 KGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER 122 (281)
T ss_pred cCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC
Confidence 48899999632111100 111111 2333456899999999999999888
No 173
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.79 E-value=2.7e-08 Score=70.10 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=26.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~ 62 (209)
.|+|+|+||+|||||++.|+++ |++++ .+..+.++..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE 37 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence 3899999999999999999998 98888 4666666544
No 174
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.69 E-value=1.2e-06 Score=62.67 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=60.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCC-------chHHHH--HHH---HHcC-------CCCCHH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-------ENGTMI--QNM---IKEG-------KIVPSE 83 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~-------~~~~~~--~~~---~~~~-------~~~~~~ 83 (209)
+|-|.|..|||++|+++.||++||+++++. +++.+...... .+.+.. ..+ +... .....+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 689999999999999999999999999998 66655433310 001111 111 1111 111222
Q ss_pred HHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 84 VTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 84 ~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+.......+... ...++|+.|.. ...+. ...+..+.|+|.+|.+...+|+.++
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~-----a~~il--~~~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRC-----ANYIL--RDIPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTT-----HHHHT--TT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecC-----Hhhhh--CCCCCeEEEEEECCHHHHHHHHHHH
Confidence 3333333333322 14567777753 12222 3444568999999999999999988
No 175
>PRK06761 hypothetical protein; Provisional
Probab=98.67 E-value=4e-06 Score=63.81 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
+++|+|+|+|||||||+++.|+++++...+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~ 32 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGI 32 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence 468999999999999999999999975433
No 176
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.63 E-value=1.5e-06 Score=59.98 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=51.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC-CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL 102 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 102 (209)
|+=.+.+|+||||++..|+.-+| |.++..|++..+ ......+.+.+.+.......|+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k----------------------~~~~f~~~~l~~L~~~~~~vVi 59 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK----------------------RKPKFIKAVLELLAKDTHPVVI 59 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC----------------------CHHHHHHHHHHHHhhCCCCEEE
Confidence 55678999999999999999999 999988875321 1111233344455444678899
Q ss_pred EeCCCCCHHHHHHHHH
Q 028388 103 IDGFPRNEENRAAFEA 118 (209)
Q Consensus 103 ~dg~~~~~~~~~~~~~ 118 (209)
.|...+...++..+..
T Consensus 60 aDRNNh~~reR~ql~~ 75 (168)
T PF08303_consen 60 ADRNNHQKRERKQLFE 75 (168)
T ss_pred EeCCCchHHHHHHHHH
Confidence 9988877776665443
No 177
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.63 E-value=4.9e-07 Score=77.22 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
...+|++.|.||+||||+++.|++.+++..++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~ 245 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQ 245 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCC
Confidence 45689999999999999999999999765544
No 178
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.63 E-value=4.9e-06 Score=61.38 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-- 96 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 96 (209)
..|.+|++.|..||||+.+.+.|.+.++-..+....+-.. . +.+.....+.+.....
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p-------t--------------~eE~~~p~lwRfw~~lP~ 87 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP-------S--------------DRERTQWYFQRYVQHLPA 87 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC-------C--------------HHHHcChHHHHHHHhCCC
Confidence 4689999999999999999999999997444433111000 0 0001111222222222
Q ss_pred CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--c
Q 028388 97 GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD--N 152 (209)
Q Consensus 97 ~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~--~ 152 (209)
.|+..|+|+..+. ...+..|++. .....-+-+||+++.++..+|+..| ......+ .
T Consensus 88 ~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~ 167 (230)
T TIGR03707 88 AGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLS 167 (230)
T ss_pred CCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCC
Confidence 2777777764433 2333344442 3444556899999999999999999 3332222 2
Q ss_pred HHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCCC
Q 028388 153 VETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAK 187 (209)
Q Consensus 153 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (209)
+.++.. +...|......++.... ..+++++|+++.
T Consensus 168 ~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 205 (230)
T TIGR03707 168 PMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDD 205 (230)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 233322 34445554444444333 235899999963
No 179
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.59 E-value=2.4e-07 Score=63.25 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999864
No 180
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.9e-07 Score=75.36 Aligned_cols=120 Identities=18% Similarity=0.295 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh--HHHHHHHHcCCchHHHHHHHHHc--------------------C
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG--DLLRAEIKSGSENGTMIQNMIKE--------------------G 77 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 77 (209)
-|.=|++.||||+|||.||+.+|.+++.++++.. .++..+ .+ +--+.+++.+.. .
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SG--ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkR 298 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SG--ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKR 298 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-Cc--ccHHHHHHHHHHHhccCCeEEEeecccccccch
Confidence 3556899999999999999999999999887741 111111 11 111122222211 0
Q ss_pred CCCCHHHHHHHHHHHHHhcC--------CCeEEEeCCCCCHHHHH-HHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 78 KIVPSEVTIKLLQKAMEESG--------NDKFLIDGFPRNEENRA-AFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 78 ~~~~~~~~~~~i~~~~~~~~--------~~~~i~dg~~~~~~~~~-~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
+....+.-..++.+.+...+ +.+|++-|......-.+ .+. ....+|.-|.|.+|.+...+++..-
T Consensus 299 e~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR--RaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 299 EEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR--RAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred hhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh--ccccccceeeecCCchHHHHHHHHH
Confidence 11112222344444443221 46666665333333222 333 4667899999999999999988875
No 181
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.56 E-value=9.9e-06 Score=60.93 Aligned_cols=146 Identities=11% Similarity=0.137 Sum_probs=84.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G 97 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~ 97 (209)
.|.+|++.|..||||..+.+.|.+.++-..+....+-. ... .+.....+.+..... .
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~-------Pt~--------------eE~~~p~lWRfw~~lP~~ 113 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA-------PSA--------------EELDHDFLWRIHKALPER 113 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC-------CCH--------------HHHcCchHHHHHHhCCCC
Confidence 58999999999999999999999999744443311100 000 000011122222222 3
Q ss_pred CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--cH
Q 028388 98 NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD--NV 153 (209)
Q Consensus 98 ~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~--~~ 153 (209)
|+..|+|+..+. ...+..|++. .....-+-+||+++.++..+|+..| ......+ .+
T Consensus 114 G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~ 193 (264)
T TIGR03709 114 GEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSP 193 (264)
T ss_pred CeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCH
Confidence 778888875433 2233333332 3344556899999999999999998 3333322 22
Q ss_pred HHHH--HHHHHHHhhchhHHHHHh-hcCcEEEEcCC
Q 028388 154 ETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAA 186 (209)
Q Consensus 154 ~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~ 186 (209)
.++. +++..|......++.... ..+++++|+++
T Consensus 194 ~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~ 229 (264)
T TIGR03709 194 ADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPAD 229 (264)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCC
Confidence 3332 234445554444444333 24589999996
No 182
>PHA03135 thymidine kinase; Provisional
Probab=98.54 E-value=1.1e-05 Score=62.26 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+-.+|.|.|+.|+||||+++.|++..
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~~ 34 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDHS 34 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 445679999999999999999999863
No 183
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.54 E-value=7.2e-06 Score=66.91 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=86.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES- 96 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 96 (209)
...|.+|++.|..||||++..+.|.+.++-..+..-.+... . +.+.....+.+.....
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P-------~--------------~eE~~~~flwRfw~~lP 95 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRP-------S--------------DEERERPPMWRFWRRLP 95 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCC-------C--------------HHHhcCcHHHHHHHhCC
Confidence 35688999999999999999999999996433322110000 0 0011111222222222
Q ss_pred -CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--
Q 028388 97 -GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD-- 151 (209)
Q Consensus 97 -~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~-- 151 (209)
.|...|+|+..+. ..++..|++. .....-+-+||+++.++..+|+..| ..+...+
T Consensus 96 ~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~ 175 (493)
T TIGR03708 96 PKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRV 175 (493)
T ss_pred CCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCC
Confidence 2778888865443 2233333332 3444556899999999999999999 3333322
Q ss_pred cHHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCCC
Q 028388 152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAK 187 (209)
Q Consensus 152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 187 (209)
.+.++.. +...|......++.... ..+++++|+++.
T Consensus 176 s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~add 214 (493)
T TIGR03708 176 TPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGED 214 (493)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 3333333 34455555544444433 234899999963
No 184
>PHA03134 thymidine kinase; Provisional
Probab=98.54 E-value=1.6e-05 Score=61.43 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=29.2
Q ss_pred cEEEEEecCHHHHHHHHhhccCCCCCCcHH-HHHHHHHHHHhhc
Q 028388 125 EFVLFFDCSEEEMERRILNRNQGREDDNVE-TIRKRFKVFLESS 167 (209)
Q Consensus 125 ~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~-~~~~~~~~~~~~~ 167 (209)
+.+|+++.++++..+|+.+| +|+.+..+ .+...+...+...
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R--~R~gE~id~~yL~~l~n~Y~~l 206 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRAR--ARIGEQIDAKLIAALRNVYAML 206 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHc--CCCccccCHHHHHHHHHHHHHH
Confidence 78999999999999999999 77666433 3444444443433
No 185
>PHA03138 thymidine kinase; Provisional
Probab=98.51 E-value=2.1e-06 Score=66.20 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+-..|.|.|+.|+||||+++.+.+.+
T Consensus 11 ~~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 11 CILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred cEEEEEEECCCCcCHHhHHHHHHHhh
Confidence 34579999999999999998776654
No 186
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.50 E-value=1.2e-07 Score=73.17 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
++++|+|+||+||||||+|..|++.++..+|+.|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 46799999999999999999999999999998876
No 187
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.50 E-value=2.2e-06 Score=60.67 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=64.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH-----
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK----- 91 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----- 91 (209)
++.+.|.|++||||+++.|.-... ..+++.||+.-...+.........+. ......+-.+..++.
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRg----r~~~~iEk~ISaiqedtdwp 78 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRG----RFECHIEKCISAIQEDTDWP 78 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhc----hHHHHHHHHHHHHhcccCCC
Confidence 578999999999999999865432 45566667653322211111110000 000001111222220
Q ss_pred ----HHH-----hcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 92 ----AME-----ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 92 ----~~~-----~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+. +...+.+++|..++....+..|+++ ......-+||+...-+++.++...|
T Consensus 79 pqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~R 142 (291)
T KOG4622|consen 79 PQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHR 142 (291)
T ss_pred chheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcccc
Confidence 010 1114677888755554444445444 2222334999999999999999988
No 188
>PLN02840 tRNA dimethylallyltransferase
Probab=98.49 E-value=1.6e-07 Score=74.73 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=33.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
-...++++|+|.||+||||||++..|+++++..+|+.|.
T Consensus 16 ~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 16 SKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 345567799999999999999999999999988887654
No 189
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.48 E-value=1.2e-07 Score=64.12 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=25.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
|+|.||||+||||+++.+++.++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 6899999999999999999999976644
No 190
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=2e-06 Score=58.04 Aligned_cols=98 Identities=13% Similarity=0.252 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
++++|.|+.|+||||+++.+++.+. ..+++.++.-...... .+ ..+.+.+... ..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~--~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD--LLEYFLELIK-PG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh--hHHHHHHhhc-cC
Confidence 5789999999999999999998875 7777775543322100 00 1122222211 13
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028388 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R 140 (209)
...+++|..-....+...+..+....++.-|++..+......+
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 5778899765555555555554233366788888887666544
No 191
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=98.44 E-value=1.9e-06 Score=63.63 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
.|.+|+|.|..||||+.+.+.|.+.++ +.+.+.+.-..+. .. ...+.+.....
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE--------------~~----------~p~lwRfw~~l 85 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEE--------------LR----------RPFLWRFWRAL 85 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHH--------------HT----------S-TTHHHHTTS
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhH--------------cC----------CCcHHHHHHhC
Confidence 568999999999999999999999886 3333332111111 00 11122222222
Q ss_pred --CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC-
Q 028388 97 --GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD- 151 (209)
Q Consensus 97 --~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~- 151 (209)
.|+..|+|+..+. ...+..|++. .....-+-|||+.+.++..+|+.+| ..+...+
T Consensus 86 P~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wk 165 (228)
T PF03976_consen 86 PARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWK 165 (228)
T ss_dssp --TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG
T ss_pred CCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcccccc
Confidence 3888888875433 1223333332 3444556899999999999999999 3333222
Q ss_pred -cHHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCC
Q 028388 152 -NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAA 186 (209)
Q Consensus 152 -~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~ 186 (209)
.+.++.. .+..|......++.... ...++++|+++
T Consensus 166 v~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~ 204 (228)
T PF03976_consen 166 VSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPAD 204 (228)
T ss_dssp --HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-S
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCC
Confidence 2333333 33444444444444333 34589999997
No 192
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.42 E-value=7.3e-06 Score=65.45 Aligned_cols=107 Identities=23% Similarity=0.391 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSEVTIKLLQK 91 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~ 91 (209)
++.+++++|++||||||++..|+..+ | ..+++. |.++.... ..+..+..... ....... ..+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~------eQLk~yAe~lgvp~~~~~~~-~~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAI------EQLKRYADTMGMPFYPVKDI-KKFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHH------HHHHHHHHhcCCCeeehHHH-HHHHH
Confidence 56789999999999999999999765 2 233444 54444311 12222212111 1111112 23333
Q ss_pred HHHhcCCCeEEEe--CCC-CCHHHHHHHHHhc----C-CCCcEEEEEecCH
Q 028388 92 AMEESGNDKFLID--GFP-RNEENRAAFEAVT----K-IEPEFVLFFDCSE 134 (209)
Q Consensus 92 ~~~~~~~~~~i~d--g~~-~~~~~~~~~~~~~----~-~~~~~~i~L~~~~ 134 (209)
.+.......+++| |++ +...+...+..+. . .....++.|.+..
T Consensus 294 ~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 4443346789999 553 4556666665541 1 1224455666543
No 193
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.42 E-value=2.7e-06 Score=68.15 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=29.8
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+.-....|+|+|++|||||||++.|++.+|...+.
T Consensus 215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 215 RPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred hhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 34456789999999999999999999999977654
No 194
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.38 E-value=3.6e-07 Score=62.66 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
++.|+|+|+|||||||+++.+++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 57799999999999999999999883
No 195
>PF05729 NACHT: NACHT domain
Probab=98.34 E-value=3.1e-06 Score=59.41 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++++|.|.||+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 368999999999999999999887
No 196
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.34 E-value=3.7e-05 Score=52.68 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=94.1
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHc-C--CchHHHHHH----HHHcCC-CCCHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS-G--SENGTMIQN----MIKEGK-IVPSEVTI 86 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~-~--~~~~~~~~~----~~~~~~-~~~~~~~~ 86 (209)
.+++.++|++.|.|-||||++|..+.+... |.++-.|-+. +.++. . ...+..... ...... ..+-.+..
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~-e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e 97 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFW-EALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE 97 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHH-HhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence 356788999999999999999999988875 5555564443 33332 1 111100000 000000 11112221
Q ss_pred HHHH---HHHH--hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388 87 KLLQ---KAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK 161 (209)
Q Consensus 87 ~~i~---~~~~--~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (209)
..+. ..+. ...+..++.|.+.-...+.....+.....+...+=+.||.|+..+|-..| +.........
T Consensus 98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr--~dR~pG~~rg----- 170 (205)
T COG3896 98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR--GDRHPGWNRG----- 170 (205)
T ss_pred HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc--CCcCcchhhh-----
Confidence 1111 1111 12378899998877767666655533334456888999999999998877 2211111111
Q ss_pred HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388 162 VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (209)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~ 201 (209)
.+++.. .....-+.+|+ ..++.|....|.+-++
T Consensus 171 ~~r~vH-------a~~~YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 171 SARAVH-------ADAEYDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred hHHHhc-------CCcceeeeecccCCCHHHHHHHHHHHhc
Confidence 122211 11112256676 4488999988887654
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=3.3e-06 Score=57.03 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--------CCcee--cHhHHHHHHHHcCCchHHHHHHHHHcCCC--CCHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF--------GYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKI--VPSEVTIK 87 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l--------~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 87 (209)
+..+++|.|+||+|||++++.+++.+ +..++ +..... ....+...+...+..... .+...+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35679999999999999999999987 43333 221111 001122233333322222 23455557
Q ss_pred HHHHHHHhcCCCeEEEeCCCC--CHHHHHHHHHhcCCCCcEEEEEecCH
Q 028388 88 LLQKAMEESGNDKFLIDGFPR--NEENRAAFEAVTKIEPEFVLFFDCSE 134 (209)
Q Consensus 88 ~i~~~~~~~~~~~~i~dg~~~--~~~~~~~~~~~~~~~~~~~i~L~~~~ 134 (209)
.+.+.+.......+|+|..-. .......+..+. ..+.+.+.|-..+
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-CSCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-hCCCCeEEEEECh
Confidence 777777765445788997532 233333444422 2555555554443
No 198
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.6e-05 Score=65.84 Aligned_cols=129 Identities=18% Similarity=0.264 Sum_probs=72.1
Q ss_pred cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHHHHHHcCCc-hHHHHHH----------------H
Q 028388 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSE-NGTMIQN----------------M 73 (209)
Q Consensus 13 ~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~~~~~~~~~-~~~~~~~----------------~ 73 (209)
+..+-.+.|+-|++.||||+||||+|+.||..-+..+++ .-+++.+++-.... ..+.++. .
T Consensus 460 F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 460 FARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDAL 539 (693)
T ss_pred HHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhH
Confidence 455556678889999999999999999999988766655 34555544322111 1111111 1
Q ss_pred HHc-CCCCCHHHHHHHHHHHHHhcC-----CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 74 IKE-GKIVPSEVTIKLLQKAMEESG-----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 74 ~~~-~~~~~~~~~~~~i~~~~~~~~-----~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
-.. +.... ......+...+.+.+ ...+|+...++...-...+. .....|.+||+..|.......+.+-
T Consensus 540 ~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl--RPGRlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730|consen 540 AGSRGGSSS-GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL--RPGRLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred hhccCCCcc-chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc--CCcccceeEeecCccHHHHHHHHHH
Confidence 110 01111 111223333333322 35666665543322222222 3556899999999998877777665
No 199
>CHL00181 cbbX CbbX; Provisional
Probab=98.26 E-value=3e-05 Score=59.63 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---------CceecHhHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---------YTHLSAGDLLRAE 59 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---------~~~i~~~~~~~~~ 59 (209)
.+..+++.|+||+||||+|+.+++.+. +..++.+++...+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~ 106 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY 106 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH
Confidence 345689999999999999999998762 3445555555443
No 200
>PLN02748 tRNA dimethylallyltransferase
Probab=98.26 E-value=9.6e-07 Score=71.59 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
.++.+|+|.||+|||||||+..|+++++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 467799999999999999999999999999999864
No 201
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.25 E-value=1.2e-05 Score=61.04 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.+..+++.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999876
No 202
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=98.24 E-value=1.7e-06 Score=59.74 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=44.7
Q ss_pred cCCC-CcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHH-HHHhhchhHHHHHhhcCcEEEEcCCC-ChHHHHH
Q 028388 120 TKIE-PEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFD 194 (209)
Q Consensus 120 ~~~~-~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~-~~ee~~~ 194 (209)
.... |+++|||++|++++.+|+++| ||+.+ -.....+++. ..++.+- ..+. ...++++|++. +..+..+
T Consensus 63 ~~~~~pdl~IYL~~~~e~~~~RI~kR--gR~~E~~i~~~Yl~~L~~~~y~~~~---~~~~-~~~vl~id~~~~d~~~~~~ 136 (146)
T PF01712_consen 63 EIPKSPDLIIYLDASPETCLERIKKR--GREEEKNIPLEYLERLHEEAYEDWL---KKYD-STPVLVIDADNLDFVENPE 136 (146)
T ss_dssp HCCHH-SEEEEEE--HHHHHHHHHHC--TTGGGTTS-HHHHHHHHHHHHCCHH---SCCT-TTTGCEEEECEEECCSHHT
T ss_pred HhhccCCeEEEEeCCHHHHHHHHHHh--CCchhcCCCHHHHHHHhHHHHHHHH---HhCC-CCceEEEECCccCcccCHH
Confidence 5566 999999999999999999999 77655 2345555555 3333221 1111 23567777754 5555555
Q ss_pred HHHHhcC
Q 028388 195 AVKAVFT 201 (209)
Q Consensus 195 ~i~~~i~ 201 (209)
.+...+.
T Consensus 137 ~~~~~~~ 143 (146)
T PF01712_consen 137 DIEQVIN 143 (146)
T ss_dssp THHHHHC
T ss_pred HHHHHHH
Confidence 5555444
No 203
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.24 E-value=1.7e-06 Score=63.11 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~ 62 (209)
++|+|+|.|||||||+++.+.+..+..-++.++.+++.+..
T Consensus 1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l~~ 41 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEILAI 41 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHHHH
Confidence 58999999999999999999665444338888888877543
No 204
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=5.2e-06 Score=61.58 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~ 59 (209)
.+.++|.|++|||||+|++.+++..+..+++.+++..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~ 82 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDA 82 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHH
Confidence 345899999999999999999999999999987655544
No 205
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.22 E-value=9.8e-07 Score=67.31 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=29.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
+|+|.||+|||||+++..|++.++..+|+.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 48999999999999999999999998888765
No 206
>PRK14974 cell division protein FtsY; Provisional
Probab=98.22 E-value=9.2e-06 Score=63.51 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+|.+|+++|+|||||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458899999999999999888888766
No 207
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.22 E-value=8.5e-06 Score=65.48 Aligned_cols=39 Identities=33% Similarity=0.619 Sum_probs=30.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---CC--ceecHhHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLR 57 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~--~~i~~~~~~~ 57 (209)
..+|.+|+++|++||||||.+..||..+ |. .+++. |.++
T Consensus 97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~-D~~R 140 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA-DTFR 140 (429)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC-cccc
Confidence 3458899999999999999999999877 43 44555 4444
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.22 E-value=1.2e-06 Score=59.54 Aligned_cols=28 Identities=32% Similarity=0.615 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++|.|||||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4679999999999999999999988654
No 209
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.22 E-value=1.1e-05 Score=65.22 Aligned_cols=27 Identities=37% Similarity=0.628 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+|.+|+++|++||||||++..|+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999999877
No 210
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.22 E-value=1.6e-06 Score=63.20 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
..-+++.||||.||||||+.+|++++..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 456899999999999999999999986553
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.21 E-value=1.4e-06 Score=68.02 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+.++++|.|||||||||+|+.|++.++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999999885
No 212
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.20 E-value=2.6e-06 Score=61.77 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
|++|++.||+|+||||.+-+||.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 78999999999999999999998873
No 213
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.20 E-value=1.3e-05 Score=65.90 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
..|+-|++.||||+|||++|+.++..++.+++..
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4567899999999999999999999999777553
No 214
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=98.19 E-value=0.00013 Score=51.17 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=67.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcC-----------CchHHH-HH---HHHHcCCCCCHHH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSG-----------SENGTM-IQ---NMIKEGKIVPSEV 84 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~-----------~~~~~~-~~---~~~~~~~~~~~~~ 84 (209)
+|+|+|..+|||.|++..|.++++. .+++..+-+...+... ..+.+. .. ++...........
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 5899999999999999999999974 2455544444433321 112111 11 1111000001111
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 85 ~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
...++.. ......+|+.+- +.......|.+ ....-.+.|-+++++++..+|.-..
T Consensus 81 F~r~~~~---~~~~~v~iIsD~-Rr~~dv~~f~~-~~g~~~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 81 FCRKIVE---GISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred HHHHHHh---ccCCCEEEEeCC-CcccHHHHHHH-HcCCceEEEEEecCHHHHHHHHHhc
Confidence 1222222 222346666654 67777788887 4434456899999999999997554
No 215
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.4e-06 Score=66.31 Aligned_cols=27 Identities=22% Similarity=0.617 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
..++|++.||||.|||+||+.|||+|.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 456899999999999999999999994
No 216
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.18 E-value=1.4e-06 Score=61.73 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~ 52 (209)
++++|.|+|||||||+|..|+..++ ..++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 4799999999999999999999987 445554
No 217
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.17 E-value=1.8e-06 Score=68.70 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~ 53 (209)
.|..|++.||||+||||+|+.|++.++.+++..+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4678999999999999999999999998887765
No 218
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.17 E-value=1.1e-05 Score=63.23 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=30.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
+...+....++-||||+||||+|+.|++..+..+...
T Consensus 43 v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 43 VEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred HhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 3445566788999999999999999999998766443
No 219
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.17 E-value=0.00021 Score=58.58 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=87.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES- 96 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 96 (209)
...|.+|++.|..+|||....+.|.+.++-..+..-.+-. +.. .+.....+.+.....
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~-------Pt~--------------~E~~~~~lwRf~~~lP 354 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAA-------PTD--------------EEKAQHYLWRFWRHIP 354 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCC-------cCH--------------HHHcCcHHHHHHHhCC
Confidence 3568899999999999999999999999743333211000 000 000111122222222
Q ss_pred -CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--
Q 028388 97 -GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD-- 151 (209)
Q Consensus 97 -~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~-- 151 (209)
.|+..|+|+..+. ..++..|++. .....-+-+||+++.++..+|+..| ..+...+
T Consensus 355 ~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~ 434 (493)
T TIGR03708 355 RRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKI 434 (493)
T ss_pred CCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcC
Confidence 3788888864433 1223333332 3444556899999999999999999 3333322
Q ss_pred cHHHHHH--HHHHHHhhchhHHHHHhh-cCcEEEEcCC
Q 028388 152 NVETIRK--RFKVFLESSLPVVQYYEA-KGKVRKIDAA 186 (209)
Q Consensus 152 ~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~id~~ 186 (209)
.++++.. +...|......++..... .+++++|+++
T Consensus 435 t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~ 472 (493)
T TIGR03708 435 TDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAN 472 (493)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCC
Confidence 4444433 344555555555554443 3589999986
No 220
>PLN02796 D-glycerate 3-kinase
Probab=98.16 E-value=1.7e-06 Score=67.31 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~ 56 (209)
.+|.+|.|.|++||||||+++.|...+. ...++.|+++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4688999999999999999999998885 3456666665
No 221
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=2.5e-06 Score=65.26 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
++.+|+|+||+|||||-+|-.||+++|.++||.|.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DS 36 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDS 36 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecch
Confidence 46899999999999999999999999999999865
No 222
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.16 E-value=3.9e-05 Score=61.97 Aligned_cols=39 Identities=38% Similarity=0.657 Sum_probs=29.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLR 57 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~ 57 (209)
..+|.+++++|++||||||++..||..+ | ..+++. |.+|
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~-D~~R 140 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC-DLYR 140 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec-cccc
Confidence 3468899999999999999999988764 2 345666 4344
No 223
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.15 E-value=2.6e-06 Score=58.28 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=25.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
|+|.|+||+|||++++.|++.++.+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 7899999999999999999999866643
No 224
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=98.14 E-value=0.00033 Score=48.27 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
.+.+.|.|+--||||||++.|+..+|..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC
Confidence 3579999999999999999999999863
No 225
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.12 E-value=2.5e-06 Score=67.92 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~ 53 (209)
.|..|++.||||+||||+|+.|++.++.+++..+
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 3678999999999999999999999998777764
No 226
>PRK10867 signal recognition particle protein; Provisional
Probab=98.12 E-value=1.8e-05 Score=63.97 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=29.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA 58 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~~ 58 (209)
...|.+|+++|++||||||++..||..+ | ..+++. |.++.
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~-D~~R~ 142 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA-DVYRP 142 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc-cccch
Confidence 3458899999999999999888888755 3 345666 43443
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=5.7e-05 Score=59.95 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+|.+|+|.|++||||||++..|+..+
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999999776
No 228
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.10 E-value=2.7e-06 Score=67.62 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~ 56 (209)
..+|.+|.|.|++||||||+++.|...+. ...|+.|+++
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 34789999999999999999999987763 4557777776
No 229
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.10 E-value=4.2e-06 Score=64.23 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
..+++|+|+||+|||||.||-.||++ +..+||.|.
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS 36 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS 36 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence 34569999999999999999999999 568888754
No 230
>PRK09169 hypothetical protein; Validated
Probab=98.09 E-value=4e-05 Score=71.18 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=77.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (209)
.....|+++|.+|+||||+.+.|+..+++.+++.|..+.+. .+..+...+.... ++.+.....+.+.+. .
T Consensus 2108 L~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr---~ 2177 (2316)
T PRK09169 2108 LGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR---W 2177 (2316)
T ss_pred HhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc---C
Confidence 34567999999999999999999999999999998877765 2333333332223 566666777777664 2
Q ss_pred CeEE-EeCCC-CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 99 DKFL-IDGFP-RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 99 ~~~i-~dg~~-~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
..|| .+|+. ........+.. -.++|||..+.+++.+|+...
T Consensus 2178 ~vVLSTGGGav~~~enr~~L~~-----~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2178 EVVLPAEGFGAAVEQARQALGA-----KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred CeEEeCCCCcccCHHHHHHHHH-----CCEEEEEECCHHHHHHHhccC
Confidence 2233 33443 33444445554 347999999999999999865
No 231
>PRK06620 hypothetical protein; Validated
Probab=98.09 E-value=7.2e-05 Score=55.06 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
..++|.||||||||+|++.+++..+..+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~ 75 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD 75 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcch
Confidence 5689999999999999999999888766553
No 232
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.09 E-value=4e-05 Score=54.45 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG 53 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~ 53 (209)
+++++|+|||||||++..++..+ + ..+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 68999999999999999999876 3 3456654
No 233
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=3.1e-05 Score=60.49 Aligned_cols=115 Identities=24% Similarity=0.407 Sum_probs=67.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC---C-ceecHhHHHHHHHHcCCchHHHHHHHHHc-------C-CCCCHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKE-------G-KIVPSE 83 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~ 83 (209)
+...+|.+|++.|.-||||||.|-.||-+|. + +.+-..|.+|....+ +.-+...+. + ..-|..
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD-----QLkqnA~k~~iP~ygsyte~dpv~ 170 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD-----QLKQNATKARVPFYGSYTEADPVK 170 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH-----HHHHHhHhhCCeeEecccccchHH
Confidence 4457899999999999999999999998883 3 223334555543211 111111111 1 111222
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh----cCCCCcEE-EEEecCHHH
Q 028388 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFV-LFFDCSEEE 136 (209)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~----~~~~~~~~-i~L~~~~~~ 136 (209)
+..+-+.+. .+..-..+|+|...+...+...|.++ ....|+.+ ++++++--.
T Consensus 171 ia~egv~~f-Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 171 IASEGVDRF-KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ 227 (483)
T ss_pred HHHHHHHHH-HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence 222233322 22235788999888888887778776 56678774 455665544
No 234
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=0.0002 Score=52.27 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc-------------hHHHHHHHHH-cCCCCCHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE-------------NGTMIQNMIK-EGKIVPSE 83 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~-------------~~~~~~~~~~-~~~~~~~~ 83 (209)
.-|+|+||.|+||+|+.+.|.++++. ..++.....+..... +.. ....+.+++. .+..+...
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts 117 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS 117 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence 57999999999999999999999973 222221211111000 000 0011112211 11111111
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcE-EEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388 84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK 161 (209)
Q Consensus 84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~-~i~L~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (209)
...++.... .++.+++|=....... . ....++. .+|+. .+...+.+|+..| ..+..+.+.+++.
T Consensus 118 --i~av~~~~~--~gk~~ildId~qg~~~---i---~~~~~~~i~i~~~pps~~~~e~rl~~r----gte~~~~l~~r~~ 183 (231)
T KOG0707|consen 118 --IAAVQRLML--SGKVCILDIDLQGVQP---I---RATSLDAIYIFIKPPSIKILEERLRAR----GTETEESLLKRLK 183 (231)
T ss_pred --HHHHHHHHh--cCCcceeehhhcCcee---e---ecCCCceEEEEecCCcchhHHHHhhcc----CcchHHHHHHHHH
Confidence 122332222 3677777722111111 0 1123333 45554 5567788888866 3456677877776
Q ss_pred HHHhhchhHHHHHhhcC--cEEEEcCCCChHHHHHHHHHhcCc
Q 028388 162 VFLESSLPVVQYYEAKG--KVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 162 ~~~~~~~~~~~~~~~~~--~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.-+...... +..+ .+.++|+ .++++....+...+..
T Consensus 184 sa~~e~~~~----~~~g~~d~~~~ns-~~lee~~kel~~~~~~ 221 (231)
T KOG0707|consen 184 SAEEEFEIL----ENSGSFDLVIVNS-DRLEEAYKELEIFISS 221 (231)
T ss_pred hhhhhhccc----cCCccccceecCC-CchhhhhhhhhhhhhH
Confidence 333322222 2222 3444444 6888888888776644
No 235
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.07 E-value=5.4e-06 Score=55.90 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
.+.+|++.|+.|+||||+++.+++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 35689999999999999999999999853
No 236
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=3.4e-05 Score=61.56 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+|.+|++.|++|+||||.+..||..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999876
No 237
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.04 E-value=6.2e-06 Score=58.22 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
..+.++.|+|++|||||||++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3567999999999999999999998774
No 238
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.04 E-value=5.4e-06 Score=58.56 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 028388 24 VFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l 45 (209)
|+|+|+||+||||+++.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999988
No 239
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.03 E-value=2.2e-05 Score=58.35 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH------hCCceecHhHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH------FGYTHLSAGDLL 56 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~------l~~~~i~~~~~~ 56 (209)
+++.+++|.|+||||||+++..++-. .+..+++.+.-.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 45779999999999999999875532 235667654433
No 240
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00024 Score=59.93 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+..++|+|++|+||||+++.|++.+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 557899999999999999999999987
No 241
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=4.5e-06 Score=60.23 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=23.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~ 42 (209)
+...++-+++|+||+||||||+.+.|-
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 445677899999999999999999984
No 242
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=8.4e-05 Score=60.57 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++||||+||||+|+.|++.++..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999864
No 243
>PRK12377 putative replication protein; Provisional
Probab=98.02 E-value=0.00032 Score=52.73 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~ 59 (209)
...++|.|+||+|||+|+..++..+ | ..+++..+++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 4579999999999999999999987 2 3566676666554
No 244
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.02 E-value=4.4e-05 Score=55.69 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=68.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCc-------------eecHh--HHHHHHHHcCCchHHHHHHHHHcCCCCCH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-------------HLSAG--DLLRAEIKSGSENGTMIQNMIKEGKIVPS 82 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~-------------~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (209)
.+.-.++.+.|+||+||||++..+.+.++.. ++..| ++.++.+... ..-+..+...+..+.+..
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f-~dP~~AharRGapwTFD~ 194 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLF-KDPQTAHARRGAPWTFDS 194 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhh-cChHHHHhhcCCCcccCH
Confidence 3445689999999999999999999876422 12222 2223322110 111222222333445555
Q ss_pred HHHHHHHHHHHH-------------------------hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388 83 EVTIKLLQKAME-------------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (209)
Q Consensus 83 ~~~~~~i~~~~~-------------------------~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~ 137 (209)
.+..+++.-.-. ....+.+|++|.....++ .-|.. .....+...|++++.+.+
T Consensus 195 ~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~-~~Wkd-i~k~~d~k~~idV~~~~a 272 (323)
T KOG2702|consen 195 NLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQ-ENWKD-IYKTLDDKYKIDVDYEAA 272 (323)
T ss_pred HHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecC-ccHHH-HHHHhhhheeccccHHHH
Confidence 554444332210 011467778875433221 11222 111245568999999999
Q ss_pred HHHHhhc
Q 028388 138 ERRILNR 144 (209)
Q Consensus 138 ~~R~~~r 144 (209)
.+|..+|
T Consensus 273 ~~RVa~R 279 (323)
T KOG2702|consen 273 EERVAKR 279 (323)
T ss_pred HHHHHHH
Confidence 9999999
No 245
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.01 E-value=5.9e-06 Score=60.67 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~ 55 (209)
..|..++|.|+||+||||+|+.|+ -...+++.|..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~--~~~~~~~~d~~ 44 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP--GKTLVLSFDMS 44 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC--CCCEEEecccc
Confidence 346789999999999999999996 23556666553
No 246
>PF13245 AAA_19: Part of AAA domain
Probab=98.01 E-value=8.2e-06 Score=49.62 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCChh-HHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKG-TQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKs-Tla~~L~~~l 45 (209)
...+++|.|+|||||| |+++.++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567888999999999 6666666555
No 247
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.00 E-value=3.2e-05 Score=61.43 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=64.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcC-CchHHHHHH-HHHc-CCCCCHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSG-SENGTMIQN-MIKE-GKIVPSEVTIKL 88 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~ 88 (209)
....|.+|+++|.=||||||.|-.||.+|. ..+++. |++|...... ..++..... ++.. ...-|.++....
T Consensus 96 ~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 96 AKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHH
Confidence 355689999999999999999999999883 334444 6666553221 111111110 1111 123344555555
Q ss_pred HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh----cCCCCcE-EEEEec
Q 028388 89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEF-VLFFDC 132 (209)
Q Consensus 89 i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~----~~~~~~~-~i~L~~ 132 (209)
++.+-.. ....+|+|.-.+.......+.++ ....|+- ++++++
T Consensus 175 l~~ak~~-~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 175 LEKAKEE-GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHHc-CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 5555442 25788999766554444444443 3445654 444455
No 248
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.00 E-value=6.3e-06 Score=63.78 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
...|+|.|+||+||||+++.|++.+|++++.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 3459999999999999999999999987763
No 249
>PHA03133 thymidine kinase; Provisional
Probab=97.99 E-value=0.0013 Score=51.43 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+-..|+|.|+.|.||||+++.+...++
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 345799999999999999988888775
No 250
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.99 E-value=2.6e-05 Score=58.41 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH-h--C--CceecHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH-F--G--YTHLSAG 53 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~-l--~--~~~i~~~ 53 (209)
+++.+++|.|+||||||+++..++-. + | ..+++.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 35679999999999999999875543 2 2 5566643
No 251
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00022 Score=54.20 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=34.6
Q ss_pred CCCeE-EEEEcCCCCChhHHHHHHHHHhCC--ceecHhHHHHHHHH
Q 028388 19 KKPTV-VFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIK 61 (209)
Q Consensus 19 ~~~~~-i~i~G~pgsGKsTla~~L~~~l~~--~~i~~~~~~~~~~~ 61 (209)
.+|+. |++.||||.|||.||+.+|.+-|- .-||.+|++.+.+-
T Consensus 163 R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 163 RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 45664 999999999999999999999884 44667788877643
No 252
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00042 Score=55.89 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
|.-+++.||||+||||+|+.+++.+++.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4558899999999999999999999874
No 253
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.96 E-value=9.2e-06 Score=60.44 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+..+|.|+|+||+|||||...|...+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999999887
No 254
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.96 E-value=8e-06 Score=58.69 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=23.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG 53 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~ 53 (209)
+++|.|+||+|||+++..++... ...+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 37899999999999999876544 35566653
No 255
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00043 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
|..++++||||+||||+|+.+++.+++
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 567899999999999999999999975
No 256
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.95 E-value=4.4e-06 Score=55.57 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
++|.|+||+||||+++.|++.++..+..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 7899999999999999999999866543
No 257
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.95 E-value=1.3e-05 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+..++|.|+||+||||+++.+++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999988
No 258
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.95 E-value=1e-05 Score=64.92 Aligned_cols=40 Identities=23% Similarity=0.465 Sum_probs=31.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR 57 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~~~ 57 (209)
...|.-|++.||||+|||++|+.++.+++..+ ++..++..
T Consensus 162 ~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 162 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34567799999999999999999999998655 44445444
No 259
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00012 Score=56.40 Aligned_cols=92 Identities=32% Similarity=0.364 Sum_probs=58.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---CC-ceecHhHHHHHHHHc-CCchHHHHHHH-HH-cCCCCCHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKS-GSENGTMIQNM-IK-EGKIVPSEVTIKLLQ 90 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~-~~i~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~ 90 (209)
..+|.+|++.|..|+||||-.-+||..| |. .++..+|.+|..... -..|++..--. +. ...--|.......++
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 4579999999999999999999999988 33 456677888865322 11122211111 11 123334456677777
Q ss_pred HHHHhcCCCeEEEeCCCCCH
Q 028388 91 KAMEESGNDKFLIDGFPRNE 110 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~~ 110 (209)
.+..+ ....+++|.-.+..
T Consensus 216 ~Akar-~~DvvliDTAGRLh 234 (340)
T COG0552 216 AAKAR-GIDVVLIDTAGRLH 234 (340)
T ss_pred HHHHc-CCCEEEEeCccccc
Confidence 77664 36788899654443
No 260
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.94 E-value=1.1e-05 Score=66.59 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
...+++++|||||||||..+.|++++|+.+.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 3568999999999999999999999997665
No 261
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.94 E-value=1.1e-05 Score=58.21 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHH-HHHcCCc--hHHHH---------HHHHHcCCCCCHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIKSGSE--NGTMI---------QNMIKEGKIVPSEVTIKLL 89 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~-~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~i 89 (209)
.+++|.||+|+|||.+|-.||+++|+++|+.|.+-.= .+.-++. ...++ ...+..|. ++.+...+.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 4789999999999999999999999999987654211 1011111 00000 01122223 4444444444
Q ss_pred HHHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcCC---CCcEEEEEecCH-HHHHHHHhhc
Q 028388 90 QKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSE-EEMERRILNR 144 (209)
Q Consensus 90 ~~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~~---~~~~~i~L~~~~-~~~~~R~~~r 144 (209)
...+.. ..+.++|++|= +..-...+.+-... -.-.+.++..+. +.-..|..+|
T Consensus 81 i~~v~~~~~~~~~IlEGG--SISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 81 ISEVNSYSAHGGLILEGG--SISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHTTTTSSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHhccccCceEEeCc--hHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 444443 34889999972 23333333331222 122366777755 5566676666
No 262
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.93 E-value=0.00097 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+.+.++|.||||+||||+++.+++.+.
T Consensus 34 ~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 34 PNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3434688999999999999999999874
No 263
>PRK04328 hypothetical protein; Provisional
Probab=97.93 E-value=3.5e-05 Score=58.11 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH-h--C--CceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH-F--G--YTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~-l--~--~~~i~~ 52 (209)
+++.+++|.|+||+|||+++..++.. + | ..+++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 35679999999999999999986543 2 2 455664
No 264
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.93 E-value=3.5e-05 Score=57.57 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR 57 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~ 57 (209)
+++.+++|.|+|||||||++..++... | ..+++.++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 457799999999999999999986543 2 45566544333
No 265
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00064 Score=56.49 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
|..++++||+|+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5568999999999999999999999864
No 266
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.92 E-value=1.2e-05 Score=62.66 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..++.+|.|+|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999988777
No 267
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00038 Score=57.57 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++||||+||||+|+.+++.+++.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5679999999999999999999999864
No 268
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.92 E-value=8.8e-06 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 028388 24 VFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988654
No 269
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00056 Score=57.07 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+..++++||+|+||||+|+.+++.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999999975
No 270
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.91 E-value=1.4e-05 Score=64.07 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=29.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
...|.-+++.||||+|||++++.++..++..++.
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3457789999999999999999999999876654
No 271
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.91 E-value=1.3e-05 Score=60.82 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
..-++|.|+||+|||++|+.|++.+|.+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 345778999999999999999999987665
No 272
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00049 Score=56.62 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
|.-++++||+|+||||+|+.+++.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4579999999999999999999998763
No 273
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.89 E-value=1.1e-05 Score=64.92 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
..|+|.||||+||||+|+.|++.++.+++..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 4689999999999999999999999877655
No 274
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.89 E-value=1.5e-05 Score=62.42 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
...|+|.|+||||||||++.|++.++.+++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4589999999999999999999999987754
No 275
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.89 E-value=7.4e-05 Score=52.83 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC--Cceec
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG--YTHLS 51 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~--~~~i~ 51 (209)
+++|.|++|||||++|..++...+ ..|+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~a 31 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIA 31 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 478999999999999999987755 34443
No 276
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=0.00014 Score=60.02 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
..|.-++|.||||+|||++++.+++.++..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 346679999999999999999999998643
No 277
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.88 E-value=1.1e-05 Score=64.31 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+..=|+|.|+||+||||+|+.||+.|.
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHH
Confidence 345599999999999999999999884
No 278
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.88 E-value=1.4e-05 Score=60.42 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=26.1
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...++.+|.|+|+||+||||+...|..+|
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 34567899999999999999999999988
No 279
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.88 E-value=1.6e-05 Score=63.27 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..|.-++|.||||+|||++++.++..++..++.
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~ 186 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 186 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEe
Confidence 346679999999999999999999999866644
No 280
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00088 Score=56.70 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
-+..++++|++|+||||+++.|++.+++.
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999863
No 281
>CHL00176 ftsH cell division protein; Validated
Probab=97.88 E-value=0.00055 Score=58.26 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=29.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
...|.-+++.||||+|||++|+.++.+.+.+++..
T Consensus 213 ~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 213 AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 34467799999999999999999999998776653
No 282
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.87 E-value=8.7e-05 Score=57.65 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
++..++.|.|+|||||||||..++... + ..+|+..+......... .+-.....+. ......+.....+...+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~--lGvd~~~l~v-~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARK--LGVDIDNLLV-SQPDTGEQALEIAETLV 129 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHH--cCCCHHHeEE-ecCCCHHHHHHHHHHHh
Confidence 356799999999999999988876554 2 55777655444332211 1111111111 11222334455555555
Q ss_pred HhcCCCeEEEeC
Q 028388 94 EESGNDKFLIDG 105 (209)
Q Consensus 94 ~~~~~~~~i~dg 105 (209)
....-..+|+|+
T Consensus 130 ~~~~~~lIVIDS 141 (321)
T TIGR02012 130 RSGAVDIIVVDS 141 (321)
T ss_pred hccCCcEEEEcc
Confidence 544567889997
No 283
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00023 Score=55.92 Aligned_cols=40 Identities=28% Similarity=0.432 Sum_probs=30.6
Q ss_pred CCe-EEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHHHHHH
Q 028388 20 KPT-VVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAE 59 (209)
Q Consensus 20 ~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~~~~~ 59 (209)
+|+ -+++.||||+|||-||+.++.+-|-.+ |+...+..++
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW 285 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence 566 489999999999999999999999555 4444444433
No 284
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.86 E-value=1.9e-05 Score=61.34 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
..+..++|.||||+|||++++.+++.++..+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3456789999999999999999999998543
No 285
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=1.8e-05 Score=53.70 Aligned_cols=29 Identities=31% Similarity=0.622 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
++..+++++|.||+|||||...|+. -|+.
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~-~Gfa 35 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALAR-AGFA 35 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHH-cCce
Confidence 3446899999999999999999975 4543
No 286
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.86 E-value=1.6e-05 Score=62.22 Aligned_cols=42 Identities=33% Similarity=0.647 Sum_probs=33.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAE 59 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~~~~~ 59 (209)
.+-|..++|.||||+|||.+|+.++.++|..+ ++.++++.++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 35577899999999999999999999999655 5555555433
No 287
>COG4240 Predicted kinase [General function prediction only]
Probab=97.85 E-value=2.4e-05 Score=56.94 Aligned_cols=43 Identities=37% Similarity=0.449 Sum_probs=34.6
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh---C---CceecHhHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---G---YTHLSAGDLLRAE 59 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l---~---~~~i~~~~~~~~~ 59 (209)
...+|.++.|+||-||||||++..|...| | ...+|.||++.-+
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth 94 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH 94 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence 44579999999999999999999887766 2 3557888887654
No 288
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.85 E-value=0.00012 Score=57.03 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=49.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
++..++.|.|+|||||||||..++... + ..+|+..+.+....... .+......+- ......+....++...+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~--lGvd~~~l~v-~~p~~~eq~l~i~~~li 129 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKK--LGVDLDNLLI-SQPDTGEQALEIADSLV 129 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHH--cCCCHHHhee-cCCCCHHHHHHHHHHHH
Confidence 356799999999999999999987544 2 56777654443322211 1111122221 12223344455666655
Q ss_pred HhcCCCeEEEeC
Q 028388 94 EESGNDKFLIDG 105 (209)
Q Consensus 94 ~~~~~~~~i~dg 105 (209)
....-..+|+|+
T Consensus 130 ~s~~~~lIVIDS 141 (325)
T cd00983 130 RSGAVDLIVVDS 141 (325)
T ss_pred hccCCCEEEEcc
Confidence 554567889997
No 289
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00052 Score=59.85 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++|+|+||+||||+|+.|++.+++.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4567999999999999999999999864
No 290
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.7e-05 Score=66.52 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=30.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGD 54 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~ 54 (209)
..+++++++.||||+|||+|++.+|+.+|-.+ ++.|-
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 34678999999999999999999999998544 55433
No 291
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.84 E-value=2.8e-05 Score=51.62 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=27.8
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+..+.||-++.+.|+||+|||.+++.||+.+
T Consensus 47 ~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 47 NPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3467889999999999999999999999985
No 292
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00049 Score=59.00 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++|+|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5678899999999999999999999864
No 293
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.84 E-value=1.7e-05 Score=57.69 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+|+|+||+||||||+++.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999887774
No 294
>PRK08116 hypothetical protein; Validated
Probab=97.84 E-value=0.00067 Score=51.74 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~ 59 (209)
+.-++|.|+||+|||.|+..+++.+ + ..+++..+++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 3458999999999999999999986 3 4566777766554
No 295
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00044 Score=58.67 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++|++|+||||+|+.+++.+++.
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4458999999999999999999999874
No 296
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.83 E-value=2.8e-05 Score=64.18 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCC---------CCCHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---------IVPSEV 84 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 84 (209)
.++.+++|.|+||+||||++..++... | ..|++.++-....+.....++-.+..+...+. ....+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 356799999999999999999988755 2 56777544333333222222222333322221 111133
Q ss_pred HHHHHHHHHHhcCCCeEEEeCC
Q 028388 85 TIKLLQKAMEESGNDKFLIDGF 106 (209)
Q Consensus 85 ~~~~i~~~~~~~~~~~~i~dg~ 106 (209)
....+...+.......+|+|+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCH
Confidence 4555555665555678888863
No 297
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.83 E-value=1.8e-05 Score=63.46 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
..|+|.||||+|||++|+.|++.++.+++..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 5799999999999999999999998776543
No 298
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.83 E-value=0.001 Score=53.88 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----C--CceecHhHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAEI 60 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l-----~--~~~i~~~~~~~~~~ 60 (209)
...++|.|++|+|||+|++.+++.+ + ..+++..++.....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~ 182 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV 182 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH
Confidence 3468999999999999999999876 2 45778777766543
No 299
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.6e-05 Score=66.66 Aligned_cols=37 Identities=22% Similarity=0.498 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDL 55 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~ 55 (209)
.+++++++.||||+|||++++.+|..|| |..+|.|-+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 4689999999999999999999999998 555665543
No 300
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.83 E-value=2.1e-05 Score=57.25 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
|+.|.|.|++||||||+.+.+.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999999988763
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.0004 Score=55.03 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG 53 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~ 53 (209)
...+.+++|.||+||||||++..|+..+ + ..+++.|
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3467899999999999999999999766 2 3456654
No 302
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.82 E-value=2.5e-05 Score=63.26 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=28.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
...|.-++|.||||+|||++|+.++.+++..++.
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 3456779999999999999999999999865543
No 303
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00049 Score=60.13 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+.-++|.|++|+||||+++.|++.|++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4458999999999999999999999863
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.82 E-value=1.3e-05 Score=59.94 Aligned_cols=21 Identities=43% Similarity=0.734 Sum_probs=18.8
Q ss_pred EEcCCCCChhHHHHHHHHHhC
Q 028388 26 VLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 26 i~G~pgsGKsTla~~L~~~l~ 46 (209)
|.||+||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999884
No 305
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.82 E-value=1.8e-05 Score=55.09 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=25.8
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++...++-.|.|+||+||||||+.+.++.-.
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3445567789999999999999999998644
No 306
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00042 Score=58.19 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-------CCceecHhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIK 61 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l-------~~~~i~~~~~~~~~~~ 61 (209)
..++|.|++|+|||.|++.++..+ ...+++..+++.++..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~ 361 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN 361 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence 348999999999999999999865 2478888887766643
No 307
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.81 E-value=2.3e-05 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++|.|+|+.+|||||+++.|.+++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999887
No 308
>PRK04195 replication factor C large subunit; Provisional
Probab=97.81 E-value=2.1e-05 Score=65.02 Aligned_cols=32 Identities=19% Similarity=0.533 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
+..++|.||||+||||+++.|++.+++.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 67899999999999999999999999766543
No 309
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.81 E-value=1.9e-05 Score=56.51 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=20.1
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
....+.+++|.|++|+||||+.+.+.+.+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999888774
No 310
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.81 E-value=2.3e-05 Score=55.54 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
.+++.||+|+|||.+|+.|++.+..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999984
No 311
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.80 E-value=2.2e-05 Score=65.05 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=29.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
...|.-+++.||||+|||++++.|+...+.+++..
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 34456799999999999999999999998766543
No 312
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.80 E-value=2.1e-05 Score=50.89 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~ 42 (209)
.....+++|.|++||||||+++.+.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3445789999999999999999987
No 313
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.80 E-value=2.6e-05 Score=61.23 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
+..++|.||||+||||+|+.+++.++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 45789999999999999999999998654
No 314
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00046 Score=58.34 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++||+|+||||+|+.|++.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999864
No 315
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00022 Score=58.22 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=33.5
Q ss_pred cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 13 ~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+..+-..-|+=|+++||||.|||-||+.+|-+-|.+++.
T Consensus 329 ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~ 367 (752)
T KOG0734|consen 329 FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY 367 (752)
T ss_pred hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence 455656668889999999999999999999999987765
No 316
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.79 E-value=2.2e-05 Score=65.89 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
+..++.+++||||.||||||+.+|++-||.++..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 3456899999999999999999999999988764
No 317
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00071 Score=56.96 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++||+|+||||+|+.|++.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5568999999999999999999999864
No 318
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.79 E-value=2.8e-05 Score=44.98 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+.+|+|++||||||+..++.=
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 319
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.79 E-value=3.3e-05 Score=51.35 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+...+|++.|.-||||||+++.+++.+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34579999999999999999999999975
No 320
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00058 Score=55.81 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-------CCceecHhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIK 61 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l-------~~~~i~~~~~~~~~~~ 61 (209)
.-++|.|+||+|||+|++.++..+ ...+++.++++.....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~ 177 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD 177 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 459999999999999999999875 3567888887776643
No 321
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.78 E-value=2.1e-05 Score=57.70 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=25.3
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-.++-+++|.||+|||||||...|.--.
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3445667899999999999999999997433
No 322
>PHA02244 ATPase-like protein
Probab=97.78 E-value=2.3e-05 Score=61.59 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~ 55 (209)
.-|+|.|+||+|||++|+.|+..++.+++....+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 3478899999999999999999999888776543
No 323
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.77 E-value=9.5e-05 Score=60.73 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=69.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHH-----HHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----EIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-- 95 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 95 (209)
=.+++||-|+||||+|+.+|+.+|+.--..++.+.+ .+..+....- -+ ++....-..+..+++.++..-.
T Consensus 40 AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv--iE-iDaASn~gVddiR~i~e~v~y~P~ 116 (515)
T COG2812 40 AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV--IE-IDAASNTGVDDIREIIEKVNYAPS 116 (515)
T ss_pred hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc--hh-hhhhhccChHHHHHHHHHhccCCc
Confidence 478999999999999999999999764222122222 2222211100 00 1111111233445555554432
Q ss_pred -cCCCeEEEeC-CCCCHHHHHHHHHhcCCCCcEEEEEec------CHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388 96 -SGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDC------SEEEMERRILNRNQGREDDNVETIRKRFKV 162 (209)
Q Consensus 96 -~~~~~~i~dg-~~~~~~~~~~~~~~~~~~~~~~i~L~~------~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~ 162 (209)
...+++|+|- +..+..-...+...--.+|.+++|+=+ -|.+++.|.+.- .-..-+.+.+..++..
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f--~fkri~~~~I~~~L~~ 189 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF--DFKRLDLEEIAKHLAA 189 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc--cccCCCHHHHHHHHHH
Confidence 2278999997 333333333333312234555444433 245677777654 2223344556555544
No 324
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00084 Score=56.09 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++|+||+||||+|+.+++.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999863
No 325
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.77 E-value=0.00013 Score=55.32 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG 53 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~ 53 (209)
++.+++|.|+||+||||+|..++-.. ...+++.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56799999999999999999976543 35666653
No 326
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.77 E-value=3.5e-05 Score=57.11 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~ 56 (209)
...+..++|.|++|+||||+++.++.... +.+++..++.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 45577899999999999999999998763 4566665543
No 327
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00024 Score=60.56 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=72.7
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH--hHHHHHHHHcCCchH-HHHHH---------------HH-
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSGSENG-TMIQN---------------MI- 74 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~--~~~~~~~~~~~~~~~-~~~~~---------------~~- 74 (209)
..+--.=|+=++++||||+|||-||+++|-+=|.++++. .+++......+...- ..+.. .+
T Consensus 337 ~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~ 416 (774)
T KOG0731|consen 337 QELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVG 416 (774)
T ss_pred HHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccc
Confidence 334334466799999999999999999999999888663 455544432221111 11110 00
Q ss_pred -Hc-C--CCCCHHHHHHHHHHHHHhcC----CCeEEEeCCCCCHHHHH-HHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 75 -KE-G--KIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRA-AFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 75 -~~-~--~~~~~~~~~~~i~~~~~~~~----~~~~i~dg~~~~~~~~~-~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.. + .....+...+.+.+.+.+.+ ...||+.+........+ .+. .....|-.|+++.|...-...+-+-
T Consensus 417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all--rpGRfdr~i~i~~p~~~~r~~i~~~ 493 (774)
T KOG0731|consen 417 RKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL--RPGRFDRQIQIDLPDVKGRASILKV 493 (774)
T ss_pred ccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc--CCCccccceeccCCchhhhHHHHHH
Confidence 01 1 11233444556666665544 45566665333332222 222 4567788888888876655555543
No 328
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0014 Score=55.64 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+.-++++||+|+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999874
No 329
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.76 E-value=0.00024 Score=61.82 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..|.-|++.||||+|||++|+.|+..++..++.
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~ 517 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIA 517 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 446678999999999999999999999876654
No 330
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.76 E-value=2.7e-05 Score=58.57 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
.=-+++.||||-||||||+.+|.++|..+
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 34689999999999999999999998544
No 331
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=6.7e-05 Score=58.21 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=45.0
Q ss_pred cCcchhh--cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCcee--cHhHHHHHHHHcCCchH
Q 028388 6 ETPVKEA--DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENG 67 (209)
Q Consensus 6 ~~~~~~~--~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i--~~~~~~~~~~~~~~~~~ 67 (209)
+-|.+.+ +..+--.-|+=|++.||||+|||-+|+++|.+.++.++ ..+.+..+++-.+..+-
T Consensus 168 ELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlV 233 (406)
T COG1222 168 ELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLV 233 (406)
T ss_pred cccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHH
Confidence 3444433 34444455777999999999999999999999997664 45788888866655444
No 332
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.76 E-value=3.4e-05 Score=60.08 Aligned_cols=28 Identities=36% Similarity=0.619 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+|.+|+++||+||||||++..|+..+
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3468899999999999999999999877
No 333
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.75 E-value=1.7e-05 Score=57.06 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=25.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
........++|.|++||||||+.+.|...+.
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3344577899999999999999999988764
No 334
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.74 E-value=3.9e-05 Score=58.51 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+|.+|+++|++|+||||.+..|+..+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3567899999999999999999999877
No 335
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.74 E-value=6e-05 Score=56.03 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLL 56 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~ 56 (209)
....++|.|++|+|||++++.++... .+.+++..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 34578999999999999999999876 56677765543
No 336
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.74 E-value=3.1e-05 Score=59.01 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+.+++|.|++||||||+++.+.+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 355899999999999999999999876
No 337
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.74 E-value=3.7e-05 Score=62.33 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.7
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
...++..++|.||||+||||+|+.|++.++..++.
T Consensus 32 ~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~ 66 (413)
T PRK13342 32 EAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA 66 (413)
T ss_pred HcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34456678899999999999999999998865544
No 338
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.73 E-value=3.3e-05 Score=61.65 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+|++|+|+|++|||||||+..|..++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999998886
No 339
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0014 Score=55.15 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+.-+++.||+|+||||+|+.+++.+++
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 557899999999999999999999974
No 340
>PRK05973 replicative DNA helicase; Provisional
Probab=97.73 E-value=3.1e-05 Score=57.61 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~ 52 (209)
.+..+++|.|.||+||||++..++... | ..+++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 456799999999999999999887644 4 445664
No 341
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.0047 Score=50.57 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE 59 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~ 59 (209)
.-++|.|++|+|||+|++.++..+ ...+++.+++....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~ 184 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL 184 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH
Confidence 357899999999999999999876 25677777666554
No 342
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.71 E-value=0.00011 Score=57.75 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=67.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND 99 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 99 (209)
..++++.|++|||||++.+.|.+. +..+++..+..+.. ++.++... . ..-+.....+.+...+...+ ..
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~-----~-~qpsQ~~Fe~~l~~~l~~~~~~~ 210 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG-----G-PQPSQKDFENLLAEALLKLDPAR 210 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC-----C-CCcchHHHHHHHHHHHHcCCCCC
Confidence 456789999999999999999754 77789886665544 33222110 0 11122333556666666544 46
Q ss_pred eEEEeCCCCCH----HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 100 KFLIDGFPRNE----ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 100 ~~i~dg~~~~~----~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+++++-.+.+ -....+..+ .-.-+|++++|.+..++|+...
T Consensus 211 ~i~vE~Es~~IG~~~lP~~l~~~m---~~~~~v~i~~~~e~Rv~~l~~~ 256 (345)
T PRK11784 211 PIVVEDESRRIGRVHLPEALYEAM---QQAPIVVVEAPLEERVERLLED 256 (345)
T ss_pred eEEEEeccccccCccCCHHHHHHH---hhCCEEEEECCHHHHHHHHHHH
Confidence 77777522221 111222221 1124789999999999999987
No 343
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0013 Score=55.80 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++|+|++|+||||+++.|++.+++.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5678999999999999999999999753
No 344
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.71 E-value=3.3e-05 Score=57.08 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=26.3
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++...++-++.|.||+|||||||.+.++--.
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455677899999999999999999998654
No 345
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.71 E-value=5e-05 Score=58.35 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l 45 (209)
-++|.|+||+||||+|+.+++.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999888876
No 346
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.71 E-value=3.8e-05 Score=52.83 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~ 53 (209)
..-++|.|++|+||||++..|.++ ++.+++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 467999999999999999998765 66666543
No 347
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.70 E-value=3.3e-05 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.|++.|++|||||||++.|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999997633
No 348
>PRK09354 recA recombinase A; Provisional
Probab=97.70 E-value=0.00023 Score=55.92 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=48.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
++..++.|.|+|||||||||..++... | +.+|+..+-+....... ++..+...+.. ...+.+....++...+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~--lGvdld~lli~-qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKK--LGVDIDNLLVS-QPDTGEQALEIADTLV 134 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHH--cCCCHHHeEEe-cCCCHHHHHHHHHHHh
Confidence 356799999999999999999877544 2 56777655444322111 11111222211 2223344455566655
Q ss_pred HhcCCCeEEEeC
Q 028388 94 EESGNDKFLIDG 105 (209)
Q Consensus 94 ~~~~~~~~i~dg 105 (209)
....-..+|+|+
T Consensus 135 ~s~~~~lIVIDS 146 (349)
T PRK09354 135 RSGAVDLIVVDS 146 (349)
T ss_pred hcCCCCEEEEeC
Confidence 554567899997
No 349
>PRK13695 putative NTPase; Provisional
Probab=97.69 E-value=4.2e-05 Score=54.45 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
|.|+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988765
No 350
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.69 E-value=4.3e-05 Score=56.01 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=26.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+..+.+++|.++|++||||||+...+.+.++
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455789999999999999999999988764
No 351
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00096 Score=53.31 Aligned_cols=151 Identities=13% Similarity=0.254 Sum_probs=86.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-----ecHhHHHHHHHHcCCchHHHHHHHH----HcCCCCCHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-----LSAGDLLRAEIKSGSENGTMIQNMI----KEGKIVPSEVTI 86 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 86 (209)
..+..+.+|++.|.|++|||.++..|.+.++|.- ++.+.+-+........ ..++ ..+..+..++..
T Consensus 23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s-----~~ff~p~n~~~~~lr~~~a~ 97 (438)
T KOG0234|consen 23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS-----EPFFLPDNAEASKLRKQLAL 97 (438)
T ss_pred cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccccc-----ccccccCChhhhhhhHHHHH
Confidence 4566788999999999999999999999987644 4445433333221111 0111 011122222323
Q ss_pred HHHHHH---HHhcCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEe--c-CHHHHHHHHhhc-------cCCCCCCc
Q 028388 87 KLLQKA---MEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFD--C-SEEEMERRILNR-------NQGREDDN 152 (209)
Q Consensus 87 ~~i~~~---~~~~~~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~~i~L~--~-~~~~~~~R~~~r-------~~~~~~~~ 152 (209)
.++.+. +....++..|.|..+.+......+..+.. .....++|+. | +++.+-+.+..+ .....+..
T Consensus 98 ~~l~D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a 177 (438)
T KOG0234|consen 98 LALNDLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEA 177 (438)
T ss_pred HHhhhHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHH
Confidence 333333 33345899999998888877776655321 1222233333 3 555555555545 11122335
Q ss_pred HHHHHHHHHHHHhhchhHH
Q 028388 153 VETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (209)
.+.+.+++..|.....|+-
T Consensus 178 ~~dfl~ri~~ye~~YePld 196 (438)
T KOG0234|consen 178 LKDFLKRIRNYEKYYEPLD 196 (438)
T ss_pred HHHHHHHHHhhhhccCcCC
Confidence 5677778888877777764
No 352
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0015 Score=55.34 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
+.-++++|++|+||||+|+.|++.+++..
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 55799999999999999999999998653
No 353
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.69 E-value=3.8e-05 Score=63.60 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+.+++++.||||+|||||++.|++.+.
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3567999999999999999999998763
No 354
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.68 E-value=5.5e-05 Score=56.53 Aligned_cols=35 Identities=6% Similarity=0.184 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD 54 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~ 54 (209)
.+..++|.||||+|||++++.++.... ..+++.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 345799999999999999999998764 45666654
No 355
>PRK06893 DNA replication initiation factor; Validated
Probab=97.68 E-value=6e-05 Score=56.12 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG 53 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~ 53 (209)
.+.++|.|+||+|||+|++.++..+ +..+++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3578999999999999999999876 45666653
No 356
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.68 E-value=0.0004 Score=51.35 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-------CCceecHhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIK 61 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l-------~~~~i~~~~~~~~~~~ 61 (209)
..++|.|++|+|||.|.+.++.++ ...+++..++......
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~ 81 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFAD 81 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHH
Confidence 357899999999999999998765 2568888888777643
No 357
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.5e-05 Score=58.28 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
...|++.||+|||||-||+.||+.++.++.-.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 34689999999999999999999999877544
No 358
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.68 E-value=4.9e-05 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.++.+|+|+||+||||||++..|+..+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998766
No 359
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.68 E-value=5.2e-05 Score=53.93 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=26.8
Q ss_pred CCCC-eEEEEEcCCCCChhHHHHHHHHHh----CCceecH
Q 028388 18 VKKP-TVVFVLGGPGSGKGTQCANIVEHF----GYTHLSA 52 (209)
Q Consensus 18 ~~~~-~~i~i~G~pgsGKsTla~~L~~~l----~~~~i~~ 52 (209)
+++| ..|-+.||||||||||...+.+.+ ...+|..
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 3456 789999999999999988877666 4445544
No 360
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00047 Score=57.28 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
..|..+++.||||+|||++|+.++..++..+++.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 3456899999999999999999999888777664
No 361
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.00067 Score=55.72 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----C--CceecHhHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAEI 60 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l-----~--~~~i~~~~~~~~~~ 60 (209)
..++|.|+||+|||+|++.++.++ + ..+++..++..+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 458999999999999999999887 2 45777777765543
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.66 E-value=0.00014 Score=60.08 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH----h--CCceecHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH----F--GYTHLSAG 53 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~----l--~~~~i~~~ 53 (209)
.++..++|.|+|||||||+|..++-. . +..+++.+
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35679999999999999999987432 2 35566643
No 363
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.00018 Score=55.88 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecH-hHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSA-GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
++.-|+++|.+|+||||++-.|.+.++ .++.+. +|-+++-+..+-.++.+ ..+.-+..+......
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~e-----------dreenirriaevakl 117 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPE-----------DREENIRRIAEVAKL 117 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCch-----------hHHHHHHHHHHHHHH
Confidence 455799999999999999999998884 444332 23344443322211110 011112222222221
Q ss_pred -cCCCeEEEeCCCCCHH----HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 96 -SGNDKFLIDGFPRNEE----NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 96 -~~~~~~i~dg~~~~~~----~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+...+.+-.|..... ....+.+ ...-|.+-+|++++.++|.+|-.+.
T Consensus 118 fadaglvcitsfispf~~dr~~arkihe-~~~l~f~ev~v~a~l~vceqrd~k~ 170 (627)
T KOG4238|consen 118 FADAGLVCITSFISPFAKDRENARKIHE-SAGLPFFEVFVDAPLNVCEQRDVKG 170 (627)
T ss_pred HhcCCceeeehhcChhhhhhhhhhhhhc-ccCCceEEEEecCchhhhhhcChHH
Confidence 1223333444433222 2222222 3334667999999999999997664
No 364
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.66 E-value=3.2e-05 Score=59.93 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHc
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKS 62 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~ 62 (209)
.++-|+|.||||+|||.||-.+++.|| |.-++.+.++.-.+..
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence 356899999999999999999999998 4445555655544333
No 365
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.66 E-value=2.8e-05 Score=52.97 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.8
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
....+.+++|.|++|||||||.+.|+..+
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEccCCCccccceeeecccc
Confidence 34456789999999999999999998765
No 366
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.66 E-value=0.00011 Score=52.53 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE 59 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~ 59 (209)
++.-++|.|+||+|||.+|..++.++ ...+++..+++...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45679999999999999999998766 36778888888776
No 367
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=97.66 E-value=0.0043 Score=47.04 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=19.5
Q ss_pred cEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 125 EFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 125 ~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
+-+|.++.+.++..+|+.+| +|+.+..
T Consensus 147 ~niVl~~L~~~E~~rRl~~R--~R~gE~v 173 (281)
T PF00693_consen 147 TNIVLMTLPEEEHLRRLKAR--GRPGERV 173 (281)
T ss_dssp EEEEEEE--HHHHHHHHHHT--STTT-S-
T ss_pred CEEEEEeCCHHHHHHHHHHc--CCCcccc
Confidence 44778899999999999999 7777653
No 368
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00011 Score=63.60 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=28.4
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 19 ~~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
.+|. .+++.||||+|||++|+.|++.++.+++..
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 4554 689999999999999999999998766543
No 369
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.65 E-value=0.00016 Score=53.86 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=20.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
++..+++|.|+||+||||++..++-
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999755443
No 370
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.65 E-value=0.00063 Score=53.31 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE 59 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~ 59 (209)
..++|.|++|+|||+|+..++..+ ...+++..+++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 669999999999999999999987 25667777776654
No 371
>PHA02624 large T antigen; Provisional
Probab=97.64 E-value=6.6e-05 Score=62.44 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
++..+++|.||||+||||++..|.+.++...++.
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 3455999999999999999999999997656654
No 372
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.64 E-value=6.4e-05 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
++|.|+|++||||||++..|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999873
No 373
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.64 E-value=4.8e-05 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+|.|+|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 374
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=5.3e-05 Score=62.14 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
|..+++.||||+||||+|+.+++.++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999999875
No 375
>PRK06526 transposase; Provisional
Probab=97.64 E-value=8.4e-05 Score=56.09 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~ 59 (209)
.+..++|.||||+|||+++..|+... | ..+++..+++...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 45679999999999999999998765 3 3334455554443
No 376
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.64 E-value=4.1e-05 Score=57.38 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.1
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
++.-+++.++.|.||.|||||||.+.|+..+.
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456688999999999999999999998763
No 377
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.64 E-value=5.9e-05 Score=61.50 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
.+..+.+|+||+|+||||..+.|++.+|+.++
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 34568999999999999999999999998776
No 378
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0032 Score=53.31 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++|++|+||||+++.|++.+++.
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 5678999999999999999999999753
No 379
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.62 E-value=5.1e-05 Score=55.82 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-.++-++.|.|.+||||||+++.|+-..
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34567789999999999999999998544
No 380
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.62 E-value=4.9e-05 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 381
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.62 E-value=5.7e-05 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.|+|.|++|||||||.+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998644
No 382
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.61 E-value=0.00077 Score=50.50 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.++.+++|.|+||+||||++..++-..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999877654
No 383
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.60 E-value=5.6e-05 Score=54.56 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 384
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.002 Score=51.87 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
.|.-+++.||||+||||+|+.+++.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46679999999999999999999998764
No 385
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.60 E-value=0.00023 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.++.+++|.|+||+||||++..++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 4577999999999999999988664
No 386
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0016 Score=55.50 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++|++|+||||+|+.|++.+++.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5679999999999999999999999864
No 387
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.60 E-value=7.9e-05 Score=64.73 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..|..|+|.||||+||||+++.|+..++..++.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence 456779999999999999999999999866553
No 388
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.60 E-value=8.2e-05 Score=57.68 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+.+|.|+|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 389
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.59 E-value=0.00027 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
....++.|.|+||+|||+++..++..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 35679999999999999999998764
No 390
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.58 E-value=6.1e-05 Score=58.96 Aligned_cols=36 Identities=22% Similarity=0.591 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLL 56 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~ 56 (209)
++.|+|.||||+|||.+|-.+++.|| |..++.++++
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 67899999999999999999999997 3444444444
No 391
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.58 E-value=6e-05 Score=55.61 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||.+.|+-.+
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 444567899999999999999999998765
No 392
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.58 E-value=6.2e-05 Score=55.49 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||.+.|+-.+
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567899999999999999999998765
No 393
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.58 E-value=0.00066 Score=50.06 Aligned_cols=115 Identities=20% Similarity=0.313 Sum_probs=61.4
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh----CCceec--------HhHHHHHHHHc-----CCchH------HHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLS--------AGDLLRAEIKS-----GSENG------TMIQ 71 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l----~~~~i~--------~~~~~~~~~~~-----~~~~~------~~~~ 71 (209)
++...++.+..|.|++||||||+.+.+.-.+ |-..+. .++.+.-...- ..++. +.+.
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVa 107 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVA 107 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhh
Confidence 4556788899999999999999999997665 222222 22222111000 00000 1111
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCH----HHHHHHHHhcCCCCcEEEE
Q 028388 72 NMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNE----ENRAAFEAVTKIEPEFVLF 129 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~----~~~~~~~~~~~~~~~~~i~ 129 (209)
--+.....++...+..++.-.+..-.-.+.+.|-||... ..+-.+.+.....|++++|
T Consensus 108 fplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~ 169 (263)
T COG1127 108 FPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFL 169 (263)
T ss_pred eehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEe
Confidence 112233445666666666666654334455577777663 3334455534456765554
No 394
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.58 E-value=0.00019 Score=62.38 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.4
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+|. .+++.||||+|||++|+.|++.++..++.
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~ 514 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLER 514 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEE
Confidence 3555 58999999999999999999999865543
No 395
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.57 E-value=0.00035 Score=55.43 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAG 53 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~ 53 (209)
++.+|.+.||.|+||||-..+||.++. ..+|+.|
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD 242 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD 242 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec
Confidence 478999999999999999999998884 4556663
No 396
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.57 E-value=6.4e-05 Score=55.31 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567799999999999999999998765
No 397
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0027 Score=54.04 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+.-++++|++|+||||+|+.+++.+++.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4568999999999999999999999864
No 398
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.57 E-value=7.4e-05 Score=57.04 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
......+|.|.|+||||||||...|...+
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999988876
No 399
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.56 E-value=6.8e-05 Score=55.04 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||.+.|+..+
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567899999999999999999998755
No 400
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0013 Score=49.77 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE 59 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~ 59 (209)
++.-+++.|+||+|||.||..|+..+- ..++...+++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 567899999999999999999998773 3556677777665
No 401
>PLN03025 replication factor C subunit; Provisional
Probab=97.56 E-value=7.9e-05 Score=58.31 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.+.+++.||||+||||+++.+++.+.
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 334578999999999999999999873
No 402
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.56 E-value=0.0001 Score=54.04 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG 53 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~ 53 (209)
++..++.|.|+||||||+++..++... + ..+++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 356799999999999999999988654 2 5666664
No 403
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0034 Score=53.99 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++||+|+||||+|+.+++.+++.
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5678999999999999999999999864
No 404
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.55 E-value=0.0001 Score=57.59 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
.|..+++.|+||+||||+++.+++.++..+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 366788899999999999999999887543
No 405
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=7.3e-05 Score=54.86 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=25.9
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+.++.|.|++|||||||.+.|+-.+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444567899999999999999999998654
No 406
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.55 E-value=7.3e-05 Score=53.24 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.7
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~ 42 (209)
++.-..+.+++|.|++|||||||.+.+.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3444567899999999999999999985
No 407
>PRK13768 GTPase; Provisional
Probab=97.55 E-value=8.8e-05 Score=56.06 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+++++|.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999999998777
No 408
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0048 Score=52.22 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..+++.|+||+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 6789999999999999999999999863
No 409
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=7.7e-05 Score=54.85 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 410
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.54 E-value=7.4e-05 Score=55.27 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567899999999999999999998654
No 411
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.54 E-value=7.2e-05 Score=58.31 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=25.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++-+++|.||+||||||+.+.||--.
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567789999999999999999998544
No 412
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=7.5e-05 Score=55.74 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567799999999999999999998755
No 413
>PRK09183 transposase/IS protein; Provisional
Probab=97.54 E-value=0.00017 Score=54.67 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR 57 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~ 57 (209)
.+..++|.||||+|||+|+..|+... | ..+++..++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 45578899999999999999997654 3 34555545443
No 414
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.0001 Score=58.38 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..++.++++.||+|+||||++..|+..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999999999764
No 415
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.54 E-value=7.7e-05 Score=55.13 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+..+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567799999999999999999998655
No 416
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=6.8e-05 Score=59.80 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+-.++.||||+||||+..++|..|++.+-+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIyd 265 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYD 265 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEE
Confidence 3358999999999999999999999986654
No 417
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.53 E-value=7.9e-05 Score=54.84 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+..+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567799999999999999999998755
No 418
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.53 E-value=0.00011 Score=54.19 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~ 52 (209)
.++.++.|.|+|||||||+|..++... +..+++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456799999999999999999998765 2446654
No 419
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=8.5e-05 Score=54.06 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=23.9
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+.+......+++|+||+||||||+.+.++-
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 333334457999999999999999999974
No 420
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.53 E-value=8e-05 Score=55.09 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||.+.|+-.+
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444577899999999999999999998765
No 421
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.53 E-value=8e-05 Score=55.92 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 444567899999999999999999998655
No 422
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.53 E-value=6.7e-05 Score=55.60 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=18.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.+.+|.||||+||||++..+...+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 3479999999999998776666655
No 423
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.53 E-value=8.1e-05 Score=54.81 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+..+
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 445567899999999999999999998654
No 424
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.53 E-value=7.5e-05 Score=55.81 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 444567899999999999999999998654
No 425
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.53 E-value=7.8e-05 Score=54.49 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567799999999999999999998755
No 426
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.52 E-value=8.2e-05 Score=54.68 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567799999999999999999999765
No 427
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.52 E-value=0.00011 Score=52.15 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=25.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+...+.-.++++||+||||||+.+.|....
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 445667789999999999999999998766
No 428
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.012 Score=43.87 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=87.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
....+|++.|-.++||.-..+.+.+.+| +.++.. ...+ +.+.-...+++.+..
T Consensus 72 ~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval--------~aPt----------------~~E~~qwY~qRy~~~ 127 (270)
T COG2326 72 GQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL--------PAPT----------------DRERGQWYFQRYVAH 127 (270)
T ss_pred CCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec--------CCCC----------------hHhhccHHHHHHHHh
Confidence 4566899999999999999999999997 333322 0000 011112234444444
Q ss_pred cC--CCeEEEeCCCCC-------------HHHHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC-
Q 028388 96 SG--NDKFLIDGFPRN-------------EENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-NQGRED- 150 (209)
Q Consensus 96 ~~--~~~~i~dg~~~~-------------~~~~~~~~~~--------~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~- 150 (209)
.+ |..+|+|.+.++ .++...+.++ .....-+-+||.++.++-.+|...| ..+...
T Consensus 128 lPa~GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~K~W 207 (270)
T COG2326 128 LPAAGEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDPLKQW 207 (270)
T ss_pred CCCCCeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCHHhcc
Confidence 33 888899854333 2222223222 2333445889999999999999999 222221
Q ss_pred -CcHHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 151 -DNVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 151 -~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
-++.++.. +...|-.....++..-. ...+++++.++...-.=...+..++.
T Consensus 208 KlSp~D~~~r~~WddYt~A~~em~~~T~T~~APW~vV~addKk~aRlnvi~~il~ 262 (270)
T COG2326 208 KLSPMDLESRDRWDDYTKAKDEMFARTSTPEAPWYVVPADDKKRARLNVIRHLLS 262 (270)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHhccCCCCCCeEEEeCCcHHHHHHHHHHHHHH
Confidence 23444443 22334333333332222 22488888886444333444444433
No 429
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=7.5e-05 Score=54.84 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+ +++|.|++|||||||.+.|+..+
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 346 89999999999999999998654
No 430
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=8.2e-05 Score=55.58 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||++.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998755
No 431
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.52 E-value=8.6e-05 Score=53.84 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=26.0
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444567799999999999999999998765
No 432
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=8.4e-05 Score=55.68 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||++.|+-.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998765
No 433
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.52 E-value=9.2e-05 Score=52.28 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||++.|+-.+
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567799999999999999999998765
No 434
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.51 E-value=8.9e-05 Score=54.49 Aligned_cols=30 Identities=43% Similarity=0.443 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567899999999999999999998654
No 435
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.51 E-value=0.00032 Score=58.46 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~ 52 (209)
+++.+++|.|+||+||||++..++... | ..+++.
T Consensus 29 p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 29 PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 356799999999999999999765422 3 456665
No 436
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=8.8e-05 Score=54.17 Aligned_cols=34 Identities=38% Similarity=0.489 Sum_probs=27.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
+.....-+.+|.||.|||||||+..|+-+-++.+
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V 58 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV 58 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE
Confidence 4445677899999999999999999997775544
No 437
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.51 E-value=8.4e-05 Score=54.33 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567899999999999999999998755
No 438
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.51 E-value=8e-05 Score=54.78 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||.+.|+-.+
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344567899999999999999999998654
No 439
>PRK08181 transposase; Validated
Probab=97.51 E-value=0.00021 Score=54.32 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~ 59 (209)
+...++|.|+||+|||.|+..++... | ..+++..+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 44569999999999999999998755 3 5567777776655
No 440
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.51 E-value=0.00012 Score=63.98 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
++..+++.||||+||||+|+.|++.++..++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 45689999999999999999999999866543
No 441
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.51 E-value=8.8e-05 Score=55.48 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||++.|+-.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344577899999999999999999998654
No 442
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=8.9e-05 Score=55.31 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=25.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+..+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998766
No 443
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=9.4e-05 Score=52.84 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+..+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 444
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.51 E-value=9.1e-05 Score=55.00 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444567799999999999999999998654
No 445
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.50 E-value=0.00011 Score=54.57 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+.|..++|.|++||||||++..|-..+.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 45688999999999999999999877664
No 446
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=9e-05 Score=55.54 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||++.|+-.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 444567899999999999999999998654
No 447
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=8.3e-05 Score=54.99 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567899999999999999999998654
No 448
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.50 E-value=0.00066 Score=49.15 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC-----------CH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-----------PS 82 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 82 (209)
+-|.++.|+|..|+|||-+++.++--+ ...++++....++++.+-...+..+.+++..+... ..
T Consensus 26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~ 105 (235)
T COG2874 26 PVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGR 105 (235)
T ss_pred ccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccCh
Confidence 457799999999999999999987322 36788888888888776555554444444433211 11
Q ss_pred HHHHHHHHHH---HHhcCCCeEEEeCCC-----CCHHHHHH-HHHh-cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 83 EVTIKLLQKA---MEESGNDKFLIDGFP-----RNEENRAA-FEAV-TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 83 ~~~~~~i~~~---~~~~~~~~~i~dg~~-----~~~~~~~~-~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
......++.. ...-+...+|+|.+. ........ +..+ ....-..+|++++.+...-+=...|
T Consensus 106 ~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~r 177 (235)
T COG2874 106 RSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTR 177 (235)
T ss_pred HHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHHHHH
Confidence 1223333333 333347888999742 11222222 2211 3444567999999887765555444
No 449
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.50 E-value=5.2e-05 Score=59.62 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
......|+|+|++||||||+++.|...++
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 34567899999999999999999998775
No 450
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.50 E-value=9.4e-05 Score=54.95 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.++.|.|++|||||||++.|+-.+
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444567899999999999999999999766
No 451
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.50 E-value=0.00029 Score=52.27 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG 53 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~ 53 (209)
++.+++|.|+||+|||++|..++... | ..+++.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 46789999999999999999877543 3 4456653
No 452
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.50 E-value=0.00011 Score=54.99 Aligned_cols=30 Identities=30% Similarity=0.626 Sum_probs=26.9
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
...+|.+|++.|..||||||+++.|-.++.
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 456789999999999999999999998883
No 453
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.49 E-value=9.6e-05 Score=48.80 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 028388 24 VFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~ 43 (209)
|+|.|.||+|||||.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 454
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.49 E-value=9.3e-05 Score=54.96 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.3
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-+++|.|++|||||||.+.|+..+
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445577899999999999999999998655
No 455
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=8.9e-05 Score=53.65 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=24.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.-..+.++.|.|++|||||||.+.|+-.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456789999999999999999999853
No 456
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.49 E-value=0.0073 Score=43.46 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
|..+++.|++|+||||+++.+++.+..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 568999999999999999999998854
No 457
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.49 E-value=0.00019 Score=53.76 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~ 59 (209)
..+++.|+||+|||+|+..|+..+ + ..+++..+++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 468999999999999999999988 2 4556777766554
No 458
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.49 E-value=9.6e-05 Score=54.93 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 444577899999999999999999998765
No 459
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.49 E-value=9.7e-05 Score=50.89 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+....+.++.|.|++|||||||.+.|+..+
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 444567899999999999999999998765
No 460
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.48 E-value=0.0001 Score=52.66 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=26.2
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+.++.|.|++|||||||++.|+-.+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445567899999999999999999998765
No 461
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00013 Score=56.35 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.|+.|++.||.|+|||.+|+.||+.-|++++.
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 58899999999999999999999999888876
No 462
>PRK04296 thymidine kinase; Provisional
Probab=97.48 E-value=0.00012 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+++++|+||+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999988877
No 463
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00011 Score=52.34 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=25.2
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-...-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567799999999999999999998754
No 464
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.0001 Score=54.98 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEI 60 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~~~~ 60 (209)
.|+.|++.||||.|||.+|+.|+.+.+.+++. .-.++-+++
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 47889999999999999999999999877654 444554443
No 465
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.47 E-value=0.0001 Score=54.95 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567899999999999999999998754
No 466
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.47 E-value=0.00011 Score=52.19 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444567799999999999999999998765
No 467
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.47 E-value=0.00011 Score=52.30 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=24.7
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-...-++.|.|++|||||||.+.|+-.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33566799999999999999999998755
No 468
>PRK13764 ATPase; Provisional
Probab=97.47 E-value=0.00011 Score=61.60 Aligned_cols=28 Identities=25% Similarity=0.623 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+...|+|+|+|||||||+++.|++.++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456799999999999999999998885
No 469
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.0001 Score=55.27 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||++.|+-.+
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567799999999999999999998765
No 470
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.46 E-value=8.7e-05 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.-++|.|+||+|||++|+.|...|.
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 46799999999999999999998774
No 471
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00011 Score=57.61 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=25.2
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++...+.-++.+.||+||||||+.+.||--.
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444566789999999999999999999533
No 472
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.46 E-value=0.00036 Score=61.45 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=29.8
Q ss_pred CCCCe-EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388 18 VKKPT-VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL 56 (209)
Q Consensus 18 ~~~~~-~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~ 56 (209)
+.+|. .+++.||||+|||.+|+.|++.+- +..++..++.
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 34565 689999999999999999999882 3455554444
No 473
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00012 Score=54.21 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333467799999999999999999998754
No 474
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.46 E-value=0.00012 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
...|++.|++||||||+++.|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998653
No 475
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.46 E-value=0.00011 Score=54.69 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=25.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999999765
No 476
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00011 Score=55.06 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998655
No 477
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.46 E-value=0.00011 Score=55.08 Aligned_cols=29 Identities=41% Similarity=0.582 Sum_probs=25.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.-..+-+++|.|++|||||||.+.|+-.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44456779999999999999999999875
No 478
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.46 E-value=0.00011 Score=55.60 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||++.|+-.+
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998765
No 479
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00078 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++..+++.|++|+||||+++.|+..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 480
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0058 Score=51.52 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+..++++|++|+||||+|+.|++.+++.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 5679999999999999999999999763
No 481
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.45 E-value=0.00014 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
++++.|+|..+||||||...|.+++.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHH
Confidence 47899999999999999999999884
No 482
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.45 E-value=0.00012 Score=54.58 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567799999999999999999998654
No 483
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00011 Score=55.60 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 484
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.45 E-value=0.00012 Score=52.38 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++-+++|.|++|||||||.+.|+-.+
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998765
No 485
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00012 Score=55.28 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||++.|+-.+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344567899999999999999999998764
No 486
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00013 Score=52.77 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=23.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
|.-.+..+-.+.||+||||||+.+.|- ++
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lN-Rm 56 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLN-RM 56 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHH-hh
Confidence 444567789999999999999999984 44
No 487
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00011 Score=55.54 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.-..+-+++|.|++|||||||.+.|+-.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456779999999999999999999864
No 488
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.45 E-value=0.00012 Score=53.65 Aligned_cols=30 Identities=33% Similarity=0.373 Sum_probs=25.2
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 344567899999999999999999998654
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.44 E-value=0.00025 Score=58.04 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGD 54 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~ 54 (209)
+..+++|.|.||+|||||+..++..+ +..|++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 45689999999999999999987655 245666544
No 490
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.44 E-value=0.00014 Score=57.26 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..-+++.|+||+|||++++.+++.++.+++.
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 3458999999999999999999999865544
No 491
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.44 E-value=0.00013 Score=57.80 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..-+|+|+||+||||||+.+.|...+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999877
No 492
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.44 E-value=0.00012 Score=53.59 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++-++.|.|++|||||||.+.|+..+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444577899999999999999999998754
No 493
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.44 E-value=0.00012 Score=54.55 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++-++.|.|++|||||||.+.|+-.+
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567799999999999999999998655
No 494
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.44 E-value=0.00012 Score=53.41 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.5
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3445678899999999999999999998765
No 495
>PRK06851 hypothetical protein; Provisional
Probab=97.44 E-value=0.00021 Score=56.52 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=26.0
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++......+++|.|+||+||||+.+.|.+.+
T Consensus 24 ~~~~~~~~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 24 SIIDGANRIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred hhccccceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3334556789999999999999999998877
No 496
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.44 E-value=0.00012 Score=52.51 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-..+-+++|.|++|||||||.+.|+..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33466789999999999999999998765
No 497
>PRK10908 cell division protein FtsE; Provisional
Probab=97.44 E-value=0.00013 Score=54.10 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444577899999999999999999998655
No 498
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.44 E-value=0.00084 Score=59.26 Aligned_cols=37 Identities=19% Similarity=0.473 Sum_probs=28.0
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHH
Q 028388 19 KKPT-VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDL 55 (209)
Q Consensus 19 ~~~~-~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~ 55 (209)
.+|. .+++.||||+|||++|+.|++.+. +..++..++
T Consensus 595 ~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~ 637 (857)
T PRK10865 595 NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEF 637 (857)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHh
Confidence 4453 688999999999999999998772 344555444
No 499
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.44 E-value=0.00013 Score=51.44 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444567899999999999999999998654
No 500
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00012 Score=54.60 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||++.|+-.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444567899999999999999999998765
Done!