Query 028388
Match_columns 209
No_of_seqs 110 out of 1391
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 17:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 1.2E-37 4E-42 226.9 22.4 187 15-202 23-213 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 2.9E-35 9.9E-40 213.4 22.1 179 22-202 1-204 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 3.2E-33 1.1E-37 204.0 21.5 181 21-202 8-229 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 2.2E-30 7.4E-35 193.2 22.7 184 18-201 26-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 7.2E-29 2.5E-33 182.0 23.3 181 22-202 1-214 (216)
6 2c95_A Adenylate kinase 1; tra 100.0 1.1E-28 3.6E-33 178.3 22.9 184 18-202 6-193 (196)
7 3fb4_A Adenylate kinase; psych 100.0 1.4E-28 4.8E-33 180.4 23.1 181 22-202 1-214 (216)
8 3be4_A Adenylate kinase; malar 100.0 1.4E-28 4.9E-33 180.5 22.6 181 20-200 4-217 (217)
9 2cdn_A Adenylate kinase; phosp 100.0 3.4E-28 1.2E-32 176.5 24.3 196 1-201 1-200 (201)
10 1aky_A Adenylate kinase; ATP:A 100.0 3.5E-28 1.2E-32 178.8 24.5 183 20-202 3-219 (220)
11 1qf9_A UMP/CMP kinase, protein 100.0 6.7E-28 2.3E-32 173.7 24.6 184 19-202 4-191 (194)
12 1ak2_A Adenylate kinase isoenz 100.0 1.1E-27 3.6E-32 177.7 24.5 185 18-202 13-230 (233)
13 1e4v_A Adenylate kinase; trans 100.0 4.5E-28 1.5E-32 177.5 21.4 178 22-200 1-213 (214)
14 2bwj_A Adenylate kinase 5; pho 100.0 7E-28 2.4E-32 174.4 21.0 183 19-202 10-196 (199)
15 1ukz_A Uridylate kinase; trans 100.0 4E-27 1.4E-31 171.0 24.5 185 17-202 11-201 (203)
16 1tev_A UMP-CMP kinase; ploop, 100.0 6.1E-27 2.1E-31 168.9 24.5 183 20-202 2-194 (196)
17 2xb4_A Adenylate kinase; ATP-b 100.0 1.5E-27 5.3E-32 175.6 21.4 179 22-200 1-222 (223)
18 3cm0_A Adenylate kinase; ATP-b 100.0 3.5E-27 1.2E-31 169.1 21.5 179 19-201 2-185 (186)
19 1zd8_A GTP:AMP phosphotransfer 100.0 4.7E-27 1.6E-31 173.6 22.2 184 18-204 4-216 (227)
20 1zak_A Adenylate kinase; ATP:A 100.0 1.6E-26 5.4E-31 170.2 18.9 183 19-204 3-212 (222)
21 3lw7_A Adenylate kinase relate 99.9 6E-22 2E-26 140.3 18.3 170 22-203 2-177 (179)
22 2bbw_A Adenylate kinase 4, AK4 99.9 6.5E-21 2.2E-25 142.2 23.0 183 19-204 25-236 (246)
23 4hlc_A DTMP kinase, thymidylat 99.9 3.2E-20 1.1E-24 134.4 16.4 168 22-205 3-203 (205)
24 4eaq_A DTMP kinase, thymidylat 99.8 1.6E-19 5.5E-24 133.1 18.2 176 18-204 23-226 (229)
25 3v9p_A DTMP kinase, thymidylat 99.8 2.2E-20 7.5E-25 136.9 13.2 171 18-201 22-225 (227)
26 3t61_A Gluconokinase; PSI-biol 99.8 2.2E-19 7.7E-24 130.0 16.5 160 20-202 17-179 (202)
27 4edh_A DTMP kinase, thymidylat 99.8 4.2E-19 1.5E-23 129.2 17.3 175 20-205 5-209 (213)
28 3vaa_A Shikimate kinase, SK; s 99.8 1.3E-19 4.3E-24 131.1 14.1 171 15-203 19-196 (199)
29 4tmk_A Protein (thymidylate ki 99.8 5E-19 1.7E-23 128.7 17.1 174 20-207 2-211 (213)
30 3hjn_A DTMP kinase, thymidylat 99.8 4.6E-19 1.6E-23 127.6 16.8 166 22-204 1-193 (197)
31 2pbr_A DTMP kinase, thymidylat 99.8 6.8E-19 2.3E-23 126.5 17.2 163 22-203 1-192 (195)
32 2rhm_A Putative kinase; P-loop 99.8 1.6E-19 5.3E-24 129.8 13.0 121 18-144 2-125 (193)
33 2z0h_A DTMP kinase, thymidylat 99.8 1.5E-18 5E-23 125.0 18.1 166 22-204 1-193 (197)
34 3lv8_A DTMP kinase, thymidylat 99.8 1.5E-19 5.1E-24 133.2 11.3 176 20-205 26-231 (236)
35 1ly1_A Polynucleotide kinase; 99.8 9.4E-19 3.2E-23 124.3 15.2 162 21-202 2-172 (181)
36 3kb2_A SPBC2 prophage-derived 99.8 1.9E-18 6.5E-23 121.9 16.3 151 22-204 2-168 (173)
37 2v54_A DTMP kinase, thymidylat 99.8 1.6E-18 5.6E-23 125.5 15.0 169 18-204 1-192 (204)
38 3ld9_A DTMP kinase, thymidylat 99.8 2.6E-19 8.9E-24 130.6 10.6 173 17-207 17-220 (223)
39 1kht_A Adenylate kinase; phosp 99.8 1.6E-19 5.4E-24 129.5 8.9 168 21-200 3-191 (192)
40 2wwf_A Thymidilate kinase, put 99.8 1.1E-19 3.6E-24 132.6 8.1 172 18-203 7-200 (212)
41 2plr_A DTMP kinase, probable t 99.8 1.1E-18 3.7E-23 127.2 13.3 173 20-204 3-209 (213)
42 1nks_A Adenylate kinase; therm 99.8 8E-18 2.7E-22 120.8 17.5 165 22-200 2-193 (194)
43 1nn5_A Similar to deoxythymidy 99.8 9.5E-19 3.2E-23 127.7 12.0 175 16-204 4-202 (215)
44 1e6c_A Shikimate kinase; phosp 99.8 3.4E-18 1.2E-22 120.7 14.5 162 22-202 3-170 (173)
45 3trf_A Shikimate kinase, SK; a 99.8 7.4E-18 2.5E-22 120.3 15.8 168 21-205 5-177 (185)
46 3tmk_A Thymidylate kinase; pho 99.8 2.3E-18 7.8E-23 125.2 12.7 177 18-205 2-205 (216)
47 4eun_A Thermoresistant glucoki 99.8 3.7E-17 1.3E-21 118.1 17.8 168 16-205 24-196 (200)
48 3a4m_A L-seryl-tRNA(SEC) kinas 99.8 1.9E-18 6.6E-23 129.8 10.6 166 19-205 2-176 (260)
49 2iyv_A Shikimate kinase, SK; t 99.8 6.5E-18 2.2E-22 120.5 12.6 167 22-204 3-170 (184)
50 1jjv_A Dephospho-COA kinase; P 99.8 7.2E-17 2.5E-21 117.1 17.3 164 22-203 3-197 (206)
51 1knq_A Gluconate kinase; ALFA/ 99.8 2.5E-16 8.7E-21 111.3 19.3 161 19-201 6-172 (175)
52 2pt5_A Shikimate kinase, SK; a 99.8 6.5E-18 2.2E-22 118.7 10.8 158 22-202 1-163 (168)
53 2f6r_A COA synthase, bifunctio 99.8 9.5E-17 3.2E-21 121.8 17.6 169 18-204 72-270 (281)
54 1vht_A Dephospho-COA kinase; s 99.8 4.6E-17 1.6E-21 119.2 15.2 168 18-203 1-195 (218)
55 4i1u_A Dephospho-COA kinase; s 99.8 5E-17 1.7E-21 117.2 14.9 168 22-206 10-205 (210)
56 2jaq_A Deoxyguanosine kinase; 99.7 7.6E-17 2.6E-21 116.6 14.2 167 22-203 1-201 (205)
57 2vli_A Antibiotic resistance p 99.7 6.7E-16 2.3E-20 109.8 18.2 161 20-204 4-173 (183)
58 1zuh_A Shikimate kinase; alpha 99.7 1.6E-17 5.6E-22 116.7 9.6 154 22-200 8-167 (168)
59 2if2_A Dephospho-COA kinase; a 99.7 7.6E-17 2.6E-21 116.8 12.7 163 22-203 2-192 (204)
60 1via_A Shikimate kinase; struc 99.7 5.2E-17 1.8E-21 114.9 11.0 159 22-203 5-167 (175)
61 1cke_A CK, MSSA, protein (cyti 99.7 3.2E-16 1.1E-20 115.2 15.4 171 20-203 4-223 (227)
62 3ake_A Cytidylate kinase; CMP 99.7 1.1E-15 3.6E-20 110.9 16.9 163 23-201 4-207 (208)
63 1uj2_A Uridine-cytidine kinase 99.7 9.6E-18 3.3E-22 125.5 5.9 175 16-205 17-236 (252)
64 3iij_A Coilin-interacting nucl 99.7 8.5E-17 2.9E-21 114.3 10.3 112 16-144 6-117 (180)
65 1y63_A LMAJ004144AAA protein; 99.7 4.6E-16 1.6E-20 110.9 13.1 114 15-144 4-121 (184)
66 1kag_A SKI, shikimate kinase I 99.7 8E-17 2.7E-21 113.6 8.7 161 21-202 4-172 (173)
67 1ltq_A Polynucleotide kinase; 99.7 1.1E-15 3.8E-20 117.0 15.6 140 21-165 2-145 (301)
68 2qt1_A Nicotinamide riboside k 99.7 1.4E-16 4.9E-21 115.6 9.8 167 19-202 19-205 (207)
69 3fdi_A Uncharacterized protein 99.7 3.2E-15 1.1E-19 107.9 15.8 168 21-202 6-198 (201)
70 3nwj_A ATSK2; P loop, shikimat 99.7 5E-16 1.7E-20 115.5 11.7 168 21-203 48-237 (250)
71 1uf9_A TT1252 protein; P-loop, 99.7 2.6E-15 8.7E-20 108.5 14.8 165 18-203 5-194 (203)
72 3r20_A Cytidylate kinase; stru 99.7 5.3E-15 1.8E-19 108.5 15.8 176 18-205 6-230 (233)
73 2qor_A Guanylate kinase; phosp 99.6 3.2E-15 1.1E-19 108.3 13.3 165 17-204 8-198 (204)
74 1p5z_B DCK, deoxycytidine kina 99.6 3.1E-16 1.1E-20 117.9 8.1 79 122-203 173-259 (263)
75 3hdt_A Putative kinase; struct 99.6 2.6E-14 9E-19 104.4 17.9 170 20-202 13-218 (223)
76 4e22_A Cytidylate kinase; P-lo 99.6 1.4E-15 4.9E-20 113.6 11.4 176 19-203 25-245 (252)
77 3zvl_A Bifunctional polynucleo 99.6 9.5E-15 3.2E-19 116.6 15.5 103 16-144 253-357 (416)
78 1qhx_A CPT, protein (chloramph 99.6 3.2E-14 1.1E-18 100.7 15.7 162 21-201 3-177 (178)
79 1q3t_A Cytidylate kinase; nucl 99.6 2.1E-14 7E-19 106.3 15.2 175 18-202 13-234 (236)
80 2grj_A Dephospho-COA kinase; T 99.6 4.3E-15 1.5E-19 106.3 11.0 150 20-202 11-186 (192)
81 1gvn_B Zeta; postsegregational 99.6 8E-15 2.7E-19 111.4 12.2 122 17-144 29-162 (287)
82 2yvu_A Probable adenylyl-sulfa 99.6 1.5E-14 5.2E-19 103.1 12.9 160 16-202 8-183 (186)
83 2h92_A Cytidylate kinase; ross 99.6 1.9E-14 6.4E-19 105.2 12.3 171 20-202 2-217 (219)
84 2vp4_A Deoxynucleoside kinase; 99.6 7.7E-15 2.6E-19 108.2 8.5 81 121-206 144-228 (230)
85 1m7g_A Adenylylsulfate kinase; 99.6 1.3E-14 4.5E-19 105.6 9.6 164 17-202 21-202 (211)
86 2ocp_A DGK, deoxyguanosine kin 99.5 4.6E-14 1.6E-18 104.7 7.3 77 122-201 148-232 (241)
87 2pez_A Bifunctional 3'-phospho 99.5 1.3E-12 4.5E-17 92.4 13.9 164 20-202 4-175 (179)
88 3uie_A Adenylyl-sulfate kinase 99.5 7.1E-13 2.4E-17 95.6 11.6 158 18-202 22-194 (200)
89 1ex7_A Guanylate kinase; subst 99.5 4.7E-13 1.6E-17 95.0 10.1 165 23-202 3-184 (186)
90 2p5t_B PEZT; postsegregational 99.5 2.4E-13 8.3E-18 101.5 8.9 118 17-144 28-157 (253)
91 1x6v_B Bifunctional 3'-phospho 99.5 1.1E-12 3.9E-17 108.4 13.4 161 20-202 51-222 (630)
92 2gks_A Bifunctional SAT/APS ki 99.4 3.1E-12 1E-16 105.1 12.8 163 19-202 370-540 (546)
93 3tr0_A Guanylate kinase, GMP k 99.4 2.5E-12 8.7E-17 92.8 9.9 169 17-202 3-186 (205)
94 1gtv_A TMK, thymidylate kinase 99.4 1.4E-14 4.9E-19 105.4 -2.1 161 22-198 1-209 (214)
95 2axn_A 6-phosphofructo-2-kinas 99.4 9.5E-13 3.2E-17 107.6 8.1 148 18-170 32-201 (520)
96 3tau_A Guanylate kinase, GMP k 99.3 9.9E-12 3.4E-16 90.1 10.8 166 19-202 6-188 (208)
97 1m8p_A Sulfate adenylyltransfe 99.3 1.4E-11 4.8E-16 101.7 12.2 164 18-202 393-566 (573)
98 3asz_A Uridine kinase; cytidin 99.3 2.3E-11 7.9E-16 88.2 11.2 39 18-56 3-43 (211)
99 2j41_A Guanylate kinase; GMP, 99.3 2.4E-12 8.2E-17 93.1 5.9 165 19-202 4-186 (207)
100 1p6x_A Thymidine kinase; P-loo 99.3 8.4E-12 2.9E-16 96.0 8.7 29 19-47 5-33 (334)
101 1a7j_A Phosphoribulokinase; tr 99.3 2E-11 6.8E-16 92.8 8.5 38 20-57 4-46 (290)
102 2jeo_A Uridine-cytidine kinase 99.2 9.4E-11 3.2E-15 87.0 11.5 177 15-206 19-239 (245)
103 3ch4_B Pmkase, phosphomevalona 99.2 1.6E-10 5.3E-15 82.4 11.0 162 21-202 11-189 (202)
104 1e2k_A Thymidine kinase; trans 99.2 1.7E-11 5.8E-16 94.2 6.0 28 19-46 2-29 (331)
105 1rz3_A Hypothetical protein rb 99.2 6.7E-11 2.3E-15 85.2 8.7 116 17-144 18-164 (201)
106 1of1_A Thymidine kinase; trans 99.2 2.7E-11 9.1E-16 94.3 6.8 29 18-46 46-74 (376)
107 1osn_A Thymidine kinase, VZV-T 99.2 1.5E-10 5.1E-15 89.2 10.8 30 18-47 9-39 (341)
108 3a00_A Guanylate kinase, GMP k 99.2 1.8E-10 6.2E-15 81.9 9.8 166 21-202 1-184 (186)
109 2ze6_A Isopentenyl transferase 99.2 7.4E-11 2.5E-15 88.0 7.9 120 22-144 2-138 (253)
110 1bif_A 6-phosphofructo-2-kinas 99.2 8.8E-11 3E-15 95.1 8.9 148 18-170 36-205 (469)
111 2bdt_A BH3686; alpha-beta prot 99.2 1.1E-09 3.8E-14 77.9 13.3 113 22-144 3-122 (189)
112 3lnc_A Guanylate kinase, GMP k 99.2 3.8E-10 1.3E-14 83.0 11.2 175 1-202 9-208 (231)
113 1zp6_A Hypothetical protein AT 99.1 4.8E-10 1.6E-14 79.9 8.4 164 17-201 5-174 (191)
114 3tqc_A Pantothenate kinase; bi 99.1 4.1E-10 1.4E-14 86.4 8.4 121 18-144 89-247 (321)
115 3czq_A Putative polyphosphate 99.0 2.4E-09 8E-14 80.9 11.2 161 19-203 84-279 (304)
116 3ney_A 55 kDa erythrocyte memb 99.0 8.7E-10 3E-14 78.7 6.2 162 15-203 13-190 (197)
117 3c8u_A Fructokinase; YP_612366 99.0 2.4E-09 8.2E-14 77.4 8.2 134 18-161 19-184 (208)
118 1s96_A Guanylate kinase, GMP k 98.9 1.6E-08 5.4E-13 73.7 12.2 167 17-202 12-197 (219)
119 3cr8_A Sulfate adenylyltranfer 98.9 3.6E-09 1.2E-13 86.9 9.6 163 19-202 367-539 (552)
120 1kgd_A CASK, peripheral plasma 98.9 4.1E-09 1.4E-13 74.5 8.5 27 20-46 4-30 (180)
121 3a8t_A Adenylate isopentenyltr 98.9 2.1E-09 7.1E-14 82.6 6.4 36 20-55 39-74 (339)
122 1sq5_A Pantothenate kinase; P- 98.9 3.6E-09 1.2E-13 81.1 7.4 37 19-55 78-121 (308)
123 1lvg_A Guanylate kinase, GMP k 98.9 2.4E-08 8.2E-13 71.6 11.1 162 19-203 2-188 (198)
124 4gp7_A Metallophosphoesterase; 98.8 9.7E-07 3.3E-11 61.6 18.2 156 16-192 4-162 (171)
125 3czp_A Putative polyphosphate 98.7 6.9E-08 2.4E-12 78.1 8.6 160 19-202 298-492 (500)
126 3czp_A Putative polyphosphate 98.7 7.3E-08 2.5E-12 78.0 8.5 155 19-201 41-234 (500)
127 3rhf_A Putative polyphosphate 98.6 7.6E-07 2.6E-11 66.4 10.9 144 20-187 74-249 (289)
128 3crm_A TRNA delta(2)-isopenten 98.6 2.7E-08 9.2E-13 76.2 2.9 35 21-55 5-39 (323)
129 3d3q_A TRNA delta(2)-isopenten 98.5 6.5E-08 2.2E-12 74.5 3.9 34 22-55 8-41 (340)
130 3foz_A TRNA delta(2)-isopenten 98.5 8.2E-08 2.8E-12 72.8 4.0 36 19-54 8-43 (316)
131 1kjw_A Postsynaptic density pr 98.5 3.6E-07 1.2E-11 69.4 7.6 163 18-202 102-281 (295)
132 3exa_A TRNA delta(2)-isopenten 98.5 7E-08 2.4E-12 73.3 3.6 36 20-55 2-37 (322)
133 1dek_A Deoxynucleoside monopho 98.4 3.4E-07 1.1E-11 67.4 4.8 40 22-61 2-41 (241)
134 3eph_A TRNA isopentenyltransfe 98.3 4E-07 1.4E-11 71.5 3.7 34 21-54 2-35 (409)
135 3t15_A Ribulose bisphosphate c 98.3 6.1E-07 2.1E-11 68.2 4.5 38 18-55 33-72 (293)
136 3ec2_A DNA replication protein 98.2 1.7E-06 5.7E-11 60.8 5.1 43 17-59 34-82 (180)
137 1g8f_A Sulfate adenylyltransfe 98.2 7.4E-07 2.5E-11 72.4 3.6 36 19-54 393-435 (511)
138 4b4t_M 26S protease regulatory 98.2 1.2E-06 4E-11 69.8 4.5 37 15-51 209-245 (434)
139 1odf_A YGR205W, hypothetical 3 98.2 1.3E-06 4.5E-11 66.2 4.4 40 17-56 27-74 (290)
140 4b4t_K 26S protease regulatory 98.2 1.3E-06 4.6E-11 69.4 4.6 36 16-51 201-236 (428)
141 4b4t_J 26S protease regulatory 98.2 1.2E-06 4E-11 69.0 4.0 38 14-51 175-212 (405)
142 4b4t_L 26S protease subunit RP 98.2 1.4E-06 4.9E-11 69.4 4.5 37 15-51 209-245 (437)
143 3tvt_A Disks large 1 tumor sup 98.2 4.1E-05 1.4E-09 57.9 12.0 163 18-203 97-277 (292)
144 2qmh_A HPR kinase/phosphorylas 98.1 1.3E-06 4.4E-11 62.0 3.4 33 20-53 33-65 (205)
145 1lv7_A FTSH; alpha/beta domain 98.1 2.2E-06 7.7E-11 63.7 4.7 32 20-51 44-75 (257)
146 2xkx_A Disks large homolog 4; 98.1 3.3E-05 1.1E-09 65.7 12.2 164 18-203 528-708 (721)
147 2qz4_A Paraplegin; AAA+, SPG7, 98.1 2.5E-06 8.6E-11 63.4 4.8 33 19-51 37-69 (262)
148 4b4t_H 26S protease regulatory 98.1 1.8E-06 6.3E-11 68.9 4.0 38 14-51 236-273 (467)
149 3cf0_A Transitional endoplasmi 98.1 2.4E-06 8.2E-11 65.1 4.3 41 19-59 47-89 (301)
150 3h4m_A Proteasome-activating n 98.1 2.5E-06 8.5E-11 64.3 4.3 33 19-51 49-81 (285)
151 4b4t_I 26S protease regulatory 98.1 3.1E-06 1.1E-10 67.0 4.5 37 15-51 210-246 (437)
152 1ye8_A Protein THEP1, hypothet 98.0 2.7E-06 9.2E-11 59.8 3.5 26 22-47 1-26 (178)
153 3b9p_A CG5977-PA, isoform A; A 98.0 4.4E-06 1.5E-10 63.4 4.6 32 20-51 53-84 (297)
154 1d2n_A N-ethylmaleimide-sensit 98.0 4.3E-06 1.5E-10 62.7 4.3 35 18-52 61-95 (272)
155 2ga8_A Hypothetical 39.9 kDa p 98.0 7.7E-07 2.6E-11 68.8 0.2 35 15-49 18-52 (359)
156 1z6g_A Guanylate kinase; struc 98.0 3.1E-06 1.1E-10 61.4 3.3 31 15-45 17-47 (218)
157 1tue_A Replication protein E1; 98.0 4.4E-06 1.5E-10 59.6 3.8 32 20-51 57-88 (212)
158 1g41_A Heat shock protein HSLU 98.0 3.5E-06 1.2E-10 67.3 3.5 33 20-52 49-81 (444)
159 3aez_A Pantothenate kinase; tr 98.0 5.7E-06 1.9E-10 63.4 4.5 28 18-45 87-114 (312)
160 2x8a_A Nuclear valosin-contain 98.0 6.8E-06 2.3E-10 61.8 4.6 29 22-50 45-73 (274)
161 3eie_A Vacuolar protein sortin 98.0 6.2E-06 2.1E-10 63.4 4.5 31 21-51 51-81 (322)
162 2w58_A DNAI, primosome compone 98.0 1.1E-05 3.8E-10 57.6 5.5 39 21-59 54-97 (202)
163 3hws_A ATP-dependent CLP prote 98.0 4.2E-06 1.4E-10 65.5 3.5 33 20-52 50-82 (363)
164 1svm_A Large T antigen; AAA+ f 98.0 6.7E-06 2.3E-10 64.5 4.6 35 17-51 165-199 (377)
165 1jbk_A CLPB protein; beta barr 97.9 7.1E-06 2.4E-10 57.6 4.1 28 18-45 40-67 (195)
166 1ofh_A ATP-dependent HSL prote 97.9 7.4E-06 2.5E-10 62.3 4.3 31 20-50 49-79 (310)
167 1in4_A RUVB, holliday junction 97.9 6.9E-06 2.4E-10 63.5 4.1 29 21-49 51-79 (334)
168 2p65_A Hypothetical protein PF 97.9 7.7E-06 2.6E-10 57.3 3.8 27 19-45 41-67 (187)
169 1ixz_A ATP-dependent metallopr 97.9 8.7E-06 3E-10 60.4 4.1 30 22-51 50-79 (254)
170 1xwi_A SKD1 protein; VPS4B, AA 97.9 8.8E-06 3E-10 62.6 4.3 30 21-50 45-75 (322)
171 1xjc_A MOBB protein homolog; s 97.9 9E-06 3.1E-10 56.4 3.9 25 21-45 4-28 (169)
172 2r62_A Cell division protease 97.9 3.3E-06 1.1E-10 63.1 1.6 31 21-51 44-74 (268)
173 3cf2_A TER ATPase, transitiona 97.9 8.7E-06 3E-10 69.6 4.2 39 13-51 230-268 (806)
174 1um8_A ATP-dependent CLP prote 97.9 8.1E-06 2.8E-10 64.1 3.7 31 21-51 72-102 (376)
175 2qp9_X Vacuolar protein sortin 97.9 1E-05 3.4E-10 63.2 4.1 31 21-51 84-114 (355)
176 1l8q_A Chromosomal replication 97.9 1.7E-05 5.9E-10 60.9 5.4 39 20-58 36-79 (324)
177 3syl_A Protein CBBX; photosynt 97.9 1.2E-05 4.1E-10 61.3 4.3 26 20-45 66-91 (309)
178 2kjq_A DNAA-related protein; s 97.9 1.1E-05 3.6E-10 55.0 3.6 26 20-45 35-60 (149)
179 3d8b_A Fidgetin-like protein 1 97.9 1.3E-05 4.4E-10 62.6 4.5 33 19-51 115-147 (357)
180 3bos_A Putative DNA replicatio 97.9 1.1E-05 3.8E-10 58.9 3.9 27 20-46 51-77 (242)
181 1znw_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 58.0 3.7 31 16-46 15-45 (207)
182 2ce7_A Cell division protein F 97.8 1.6E-05 5.5E-10 64.2 5.0 32 20-51 48-79 (476)
183 1htw_A HI0065; nucleotide-bind 97.8 1.3E-05 4.6E-10 55.1 3.9 30 16-45 28-57 (158)
184 3kfv_A Tight junction protein 97.8 0.00044 1.5E-08 52.5 12.2 145 18-202 142-289 (308)
185 1iy2_A ATP-dependent metallopr 97.8 1.5E-05 5.1E-10 60.0 4.2 29 23-51 75-103 (278)
186 3pfi_A Holliday junction ATP-d 97.8 1.5E-05 5.3E-10 61.5 4.4 32 20-51 54-85 (338)
187 1np6_A Molybdopterin-guanine d 97.8 1.7E-05 5.7E-10 55.5 4.1 25 21-45 6-30 (174)
188 1sxj_A Activator 1 95 kDa subu 97.8 1.6E-05 5.6E-10 65.1 4.5 32 20-51 76-107 (516)
189 2c9o_A RUVB-like 1; hexameric 97.8 1.9E-05 6.4E-10 63.7 4.5 31 21-51 63-95 (456)
190 3b9q_A Chloroplast SRP recepto 97.8 2.3E-05 7.8E-10 59.7 4.6 30 16-45 95-124 (302)
191 1vma_A Cell division protein F 97.8 2.2E-05 7.7E-10 59.8 4.5 28 18-45 101-128 (306)
192 2v9p_A Replication protein E1; 97.8 1.8E-05 6.1E-10 60.3 3.9 35 16-50 121-155 (305)
193 1c9k_A COBU, adenosylcobinamid 97.8 1.3E-05 4.4E-10 56.2 2.7 25 23-48 1-25 (180)
194 3vfd_A Spastin; ATPase, microt 97.8 2.4E-05 8.3E-10 61.7 4.6 31 21-51 148-178 (389)
195 1njg_A DNA polymerase III subu 97.7 2E-05 6.9E-10 57.4 3.9 27 21-47 45-71 (250)
196 1rj9_A FTSY, signal recognitio 97.7 2.4E-05 8.4E-10 59.6 4.2 26 20-45 101-126 (304)
197 3n70_A Transport activator; si 97.7 1.9E-05 6.4E-10 53.5 3.3 25 21-45 24-48 (145)
198 3e70_C DPA, signal recognition 97.7 2.7E-05 9.2E-10 60.0 4.4 28 18-45 126-153 (328)
199 3pvs_A Replication-associated 97.7 2E-05 6.7E-10 63.4 3.6 33 19-51 48-80 (447)
200 2og2_A Putative signal recogni 97.7 3.3E-05 1.1E-09 60.1 4.5 30 16-45 152-181 (359)
201 2eyu_A Twitching motility prot 97.7 3.1E-05 1.1E-09 57.7 4.2 28 18-45 22-49 (261)
202 3tif_A Uncharacterized ABC tra 97.7 1.7E-05 5.9E-10 58.2 2.8 31 15-45 25-55 (235)
203 2qby_B CDC6 homolog 3, cell di 97.7 3.6E-05 1.2E-09 60.4 4.7 27 19-45 43-69 (384)
204 2zan_A Vacuolar protein sortin 97.7 2.8E-05 9.5E-10 62.5 4.1 38 21-58 167-207 (444)
205 2v1u_A Cell division control p 97.7 2.7E-05 9.3E-10 60.9 4.0 28 18-45 41-68 (387)
206 2chg_A Replication factor C sm 97.7 2.3E-05 8E-10 56.3 3.3 26 20-45 37-62 (226)
207 3uk6_A RUVB-like 2; hexameric 97.7 2.7E-05 9.4E-10 60.7 4.0 27 21-47 70-96 (368)
208 2ehv_A Hypothetical protein PH 97.7 2.5E-05 8.6E-10 57.5 3.5 24 19-42 28-51 (251)
209 1ypw_A Transitional endoplasmi 97.7 3.4E-05 1.2E-09 66.4 4.7 38 15-52 232-269 (806)
210 3te6_A Regulatory protein SIR3 97.7 1.6E-05 5.6E-10 60.8 2.4 30 16-45 40-69 (318)
211 2i3b_A HCR-ntpase, human cance 97.7 2.8E-05 9.7E-10 55.1 3.5 24 22-45 2-25 (189)
212 4fcw_A Chaperone protein CLPB; 97.7 3.4E-05 1.2E-09 58.7 4.2 26 20-45 45-71 (311)
213 3u61_B DNA polymerase accessor 97.7 3.2E-05 1.1E-09 59.4 4.0 33 20-52 47-79 (324)
214 2qby_A CDC6 homolog 1, cell di 97.7 3.7E-05 1.3E-09 60.1 4.4 27 19-45 43-69 (386)
215 2yhs_A FTSY, cell division pro 97.7 3.9E-05 1.3E-09 61.9 4.6 30 16-45 288-317 (503)
216 3shw_A Tight junction protein 97.7 0.00072 2.4E-08 54.4 11.8 151 18-202 221-372 (468)
217 3hu3_A Transitional endoplasmi 97.7 3.3E-05 1.1E-09 62.7 4.2 33 19-51 236-268 (489)
218 1hqc_A RUVB; extended AAA-ATPa 97.7 2.8E-05 9.4E-10 59.6 3.5 31 20-50 37-67 (324)
219 4a74_A DNA repair and recombin 97.7 3E-05 1E-09 56.3 3.5 27 19-45 23-49 (231)
220 3tqf_A HPR(Ser) kinase; transf 97.6 2.9E-05 1E-09 53.7 3.2 32 20-52 15-46 (181)
221 3m6a_A ATP-dependent protease 97.6 4E-05 1.4E-09 63.2 4.5 31 20-50 107-137 (543)
222 2orw_A Thymidine kinase; TMTK, 97.6 4E-05 1.4E-09 54.0 4.0 25 21-45 3-27 (184)
223 2dhr_A FTSH; AAA+ protein, hex 97.6 6E-05 2.1E-09 61.3 5.3 31 21-51 64-94 (499)
224 2cbz_A Multidrug resistance-as 97.6 2.7E-05 9.1E-10 57.3 2.8 31 15-45 25-55 (237)
225 2pcj_A ABC transporter, lipopr 97.6 2.1E-05 7.3E-10 57.3 2.3 30 16-45 25-54 (224)
226 2cvh_A DNA repair and recombin 97.6 4E-05 1.4E-09 55.2 3.7 34 19-52 18-53 (220)
227 2w0m_A SSO2452; RECA, SSPF, un 97.6 4.6E-05 1.6E-09 55.3 4.0 26 20-45 22-47 (235)
228 3tsz_A Tight junction protein 97.6 0.00028 9.6E-09 55.6 8.6 150 18-202 229-380 (391)
229 2px0_A Flagellar biosynthesis 97.6 4.9E-05 1.7E-09 57.7 4.0 27 19-45 103-129 (296)
230 2z4s_A Chromosomal replication 97.6 7.4E-05 2.5E-09 60.0 5.2 38 21-58 130-174 (440)
231 1b0u_A Histidine permease; ABC 97.6 3.3E-05 1.1E-09 57.6 2.8 31 15-45 26-56 (262)
232 1mv5_A LMRA, multidrug resista 97.6 3.5E-05 1.2E-09 56.9 2.9 31 15-45 22-52 (243)
233 2r2a_A Uncharacterized protein 97.6 4.8E-05 1.6E-09 54.3 3.5 23 21-43 5-27 (199)
234 2onk_A Molybdate/tungstate ABC 97.6 3.9E-05 1.3E-09 56.5 3.1 29 16-45 20-48 (240)
235 1z06_A RAS-related protein RAB 97.6 4.4E-05 1.5E-09 53.7 3.3 42 1-43 1-42 (189)
236 2f1r_A Molybdopterin-guanine d 97.6 2.2E-05 7.5E-10 54.7 1.6 25 22-46 3-27 (171)
237 3kl4_A SRP54, signal recogniti 97.6 5.3E-05 1.8E-09 60.4 4.0 27 19-45 95-121 (433)
238 2qgz_A Helicase loader, putati 97.6 7.9E-05 2.7E-09 56.9 4.9 39 21-59 152-196 (308)
239 1sxj_D Activator 1 41 kDa subu 97.6 5.3E-05 1.8E-09 58.7 4.0 25 22-46 59-83 (353)
240 2qm8_A GTPase/ATPase; G protei 97.6 7E-05 2.4E-09 57.9 4.6 30 16-45 50-79 (337)
241 3gfo_A Cobalt import ATP-bindi 97.6 2.8E-05 9.5E-10 58.4 2.2 30 16-45 29-58 (275)
242 1fnn_A CDC6P, cell division co 97.6 6.6E-05 2.3E-09 58.9 4.5 23 23-45 46-68 (389)
243 2a5j_A RAS-related protein RAB 97.6 4.6E-05 1.6E-09 53.7 3.3 26 18-43 18-43 (191)
244 2gf9_A RAS-related protein RAB 97.5 4.8E-05 1.6E-09 53.5 3.3 44 1-44 1-45 (189)
245 2ff7_A Alpha-hemolysin translo 97.5 3E-05 1E-09 57.3 2.3 30 16-45 30-59 (247)
246 3dm5_A SRP54, signal recogniti 97.5 5.7E-05 2E-09 60.3 4.0 26 20-45 99-124 (443)
247 2olj_A Amino acid ABC transpor 97.5 3.7E-05 1.3E-09 57.4 2.8 30 16-45 45-74 (263)
248 2r44_A Uncharacterized protein 97.5 3.3E-05 1.1E-09 59.5 2.6 29 22-50 47-75 (331)
249 2ixe_A Antigen peptide transpo 97.5 3.8E-05 1.3E-09 57.6 2.8 30 16-45 40-69 (271)
250 2ghi_A Transport protein; mult 97.5 3.9E-05 1.3E-09 57.2 2.8 31 15-45 40-70 (260)
251 2zu0_C Probable ATP-dependent 97.5 4.7E-05 1.6E-09 56.9 3.3 29 16-44 41-69 (267)
252 4g1u_C Hemin import ATP-bindin 97.5 3.1E-05 1.1E-09 57.9 2.3 30 16-45 32-61 (266)
253 3co5_A Putative two-component 97.5 1.4E-05 4.9E-10 53.9 0.4 26 21-46 27-52 (143)
254 1vpl_A ABC transporter, ATP-bi 97.5 4E-05 1.4E-09 57.0 2.8 30 16-45 36-65 (256)
255 2d2e_A SUFC protein; ABC-ATPas 97.5 4.1E-05 1.4E-09 56.7 2.8 29 16-44 24-52 (250)
256 1g6h_A High-affinity branched- 97.5 3.6E-05 1.2E-09 57.3 2.5 30 16-45 28-57 (257)
257 1zu4_A FTSY; GTPase, signal re 97.5 8.2E-05 2.8E-09 57.1 4.5 29 17-45 101-129 (320)
258 3cf2_A TER ATPase, transitiona 97.5 5.8E-05 2E-09 64.6 4.0 42 16-57 506-549 (806)
259 2zts_A Putative uncharacterize 97.5 0.0012 4E-08 48.4 10.7 24 20-43 29-52 (251)
260 3pxg_A Negative regulator of g 97.5 7E-05 2.4E-09 60.6 4.3 27 19-45 199-225 (468)
261 1sgw_A Putative ABC transporte 97.5 2.9E-05 9.8E-10 56.2 1.8 30 16-45 30-59 (214)
262 2pze_A Cystic fibrosis transme 97.5 3.5E-05 1.2E-09 56.3 2.3 30 16-45 29-58 (229)
263 1ji0_A ABC transporter; ATP bi 97.5 3.5E-05 1.2E-09 56.7 2.3 30 16-45 27-56 (240)
264 3oes_A GTPase rhebl1; small GT 97.5 5.7E-05 1.9E-09 53.7 3.3 35 10-44 13-47 (201)
265 3b85_A Phosphate starvation-in 97.5 5.3E-05 1.8E-09 54.5 3.1 25 20-44 21-45 (208)
266 2yz2_A Putative ABC transporte 97.5 4.9E-05 1.7E-09 56.9 2.8 31 15-45 27-57 (266)
267 1cr0_A DNA primase/helicase; R 97.5 8.1E-05 2.8E-09 56.4 4.1 29 17-45 31-59 (296)
268 1n0w_A DNA repair protein RAD5 97.5 6.6E-05 2.3E-09 55.0 3.5 26 19-44 22-47 (243)
269 2qi9_C Vitamin B12 import ATP- 97.5 4.3E-05 1.5E-09 56.5 2.3 30 16-45 21-50 (249)
270 2ewv_A Twitching motility prot 97.5 8.6E-05 2.9E-09 58.2 4.1 29 18-46 133-161 (372)
271 3con_A GTPase NRAS; structural 97.5 6.2E-05 2.1E-09 52.9 3.0 30 15-44 15-44 (190)
272 1sxj_C Activator 1 40 kDa subu 97.5 7.3E-05 2.5E-09 57.8 3.6 24 23-46 48-71 (340)
273 2www_A Methylmalonic aciduria 97.5 9.6E-05 3.3E-09 57.5 4.2 26 20-45 73-98 (349)
274 2h17_A ADP-ribosylation factor 97.5 6.8E-05 2.3E-09 52.3 3.1 27 17-43 17-43 (181)
275 2ihy_A ABC transporter, ATP-bi 97.5 4.6E-05 1.6E-09 57.4 2.3 30 16-45 42-71 (279)
276 2nq2_C Hypothetical ABC transp 97.4 4.7E-05 1.6E-09 56.5 2.2 30 16-45 26-55 (253)
277 2b8t_A Thymidine kinase; deoxy 97.4 0.00011 3.9E-09 53.3 4.2 27 19-45 10-36 (223)
278 3jvv_A Twitching mobility prot 97.4 8.6E-05 2.9E-09 57.8 3.8 27 19-45 121-147 (356)
279 1jr3_A DNA polymerase III subu 97.4 9.6E-05 3.3E-09 57.7 4.0 27 21-47 38-64 (373)
280 3p32_A Probable GTPase RV1496/ 97.4 0.00011 3.6E-09 57.4 4.2 28 18-45 76-103 (355)
281 3fvq_A Fe(3+) IONS import ATP- 97.4 7.4E-05 2.5E-09 58.1 3.3 30 16-45 25-54 (359)
282 2wsm_A Hydrogenase expression/ 97.4 0.00012 4.2E-09 52.7 4.2 27 19-45 28-54 (221)
283 2dr3_A UPF0273 protein PH0284; 97.4 0.00011 3.7E-09 53.9 3.9 26 20-45 22-47 (247)
284 1u0j_A DNA replication protein 97.4 0.00012 4.2E-09 54.4 4.2 28 19-46 102-129 (267)
285 3sop_A Neuronal-specific septi 97.4 0.0001 3.4E-09 55.3 3.7 24 22-45 3-26 (270)
286 1sxj_E Activator 1 40 kDa subu 97.4 9E-05 3.1E-09 57.5 3.6 22 24-45 39-60 (354)
287 1z0f_A RAB14, member RAS oncog 97.4 9.1E-05 3.1E-09 51.2 3.1 26 19-44 13-38 (179)
288 2v3c_C SRP54, signal recogniti 97.4 0.0001 3.5E-09 58.9 3.7 27 19-45 97-123 (432)
289 3tui_C Methionine import ATP-b 97.4 9.1E-05 3.1E-09 57.7 3.3 30 16-45 49-78 (366)
290 2yyz_A Sugar ABC transporter, 97.4 9.2E-05 3.1E-09 57.7 3.3 31 15-45 23-53 (359)
291 3rlf_A Maltose/maltodextrin im 97.4 9.2E-05 3.2E-09 58.0 3.3 30 16-45 24-53 (381)
292 1lw7_A Transcriptional regulat 97.4 8.8E-05 3E-09 58.0 3.2 28 21-48 170-197 (365)
293 1iqp_A RFCS; clamp loader, ext 97.4 0.00014 4.7E-09 55.6 4.1 28 19-46 44-71 (327)
294 2bbs_A Cystic fibrosis transme 97.4 8.1E-05 2.8E-09 56.3 2.7 29 17-45 60-88 (290)
295 2chq_A Replication factor C sm 97.4 0.00013 4.6E-09 55.5 4.0 27 19-45 36-62 (319)
296 2it1_A 362AA long hypothetical 97.4 0.0001 3.5E-09 57.5 3.3 31 15-45 23-53 (362)
297 2p5s_A RAS and EF-hand domain 97.4 0.00013 4.5E-09 51.7 3.7 32 12-43 19-50 (199)
298 1nij_A Hypothetical protein YJ 97.4 9.2E-05 3.2E-09 56.8 2.9 26 19-44 2-27 (318)
299 1nlf_A Regulatory protein REPA 97.4 0.00012 4E-09 55.1 3.4 26 20-45 29-54 (279)
300 2bjv_A PSP operon transcriptio 97.4 0.0001 3.6E-09 54.8 3.2 26 21-46 29-54 (265)
301 1p9r_A General secretion pathw 97.4 0.00016 5.4E-09 57.5 4.3 28 19-46 165-192 (418)
302 2qen_A Walker-type ATPase; unk 97.4 0.00015 5E-09 55.9 4.1 33 22-54 32-64 (350)
303 1v43_A Sugar-binding transport 97.4 0.00011 3.7E-09 57.6 3.3 30 16-45 32-61 (372)
304 1ypw_A Transitional endoplasmi 97.4 6.9E-05 2.4E-09 64.6 2.4 33 19-51 509-541 (806)
305 1g8p_A Magnesium-chelatase 38 97.4 6.8E-05 2.3E-09 58.0 2.2 24 23-46 47-70 (350)
306 1svi_A GTP-binding protein YSX 97.3 0.00017 5.9E-09 50.7 4.1 30 15-44 17-46 (195)
307 2pjz_A Hypothetical protein ST 97.3 8.5E-05 2.9E-09 55.4 2.6 30 15-45 25-54 (263)
308 2gza_A Type IV secretion syste 97.3 8.7E-05 3E-09 58.0 2.7 28 19-46 173-200 (361)
309 2hf9_A Probable hydrogenase ni 97.3 0.00017 6E-09 52.1 4.2 28 18-45 35-62 (226)
310 1z47_A CYSA, putative ABC-tran 97.3 9.3E-05 3.2E-09 57.5 2.8 30 16-45 36-65 (355)
311 3pxi_A Negative regulator of g 97.3 0.00015 5.2E-09 62.1 4.3 34 19-52 199-242 (758)
312 3nh6_A ATP-binding cassette SU 97.3 5.6E-05 1.9E-09 57.6 1.4 29 17-45 76-104 (306)
313 2gno_A DNA polymerase III, gam 97.3 0.00038 1.3E-08 53.1 6.0 29 16-44 13-41 (305)
314 1upt_A ARL1, ADP-ribosylation 97.3 0.0002 6.8E-09 49.2 4.1 26 18-43 4-29 (171)
315 2p67_A LAO/AO transport system 97.3 0.0002 6.8E-09 55.5 4.5 29 17-45 52-80 (341)
316 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00014 4.7E-09 55.6 3.4 32 21-52 123-156 (331)
317 2atv_A RERG, RAS-like estrogen 97.3 0.00017 5.9E-09 50.9 3.8 31 14-44 21-51 (196)
318 3clv_A RAB5 protein, putative; 97.3 0.00021 7.1E-09 50.5 4.2 27 18-44 4-30 (208)
319 1pzn_A RAD51, DNA repair and r 97.3 0.00015 5.1E-09 56.4 3.5 27 19-45 129-155 (349)
320 1g29_1 MALK, maltose transport 97.3 0.00011 3.8E-09 57.5 2.8 30 16-45 24-53 (372)
321 3hr8_A Protein RECA; alpha and 97.3 0.00019 6.4E-09 55.8 4.0 26 20-45 60-85 (356)
322 3bwd_D RAC-like GTP-binding pr 97.3 0.00019 6.6E-09 49.8 3.8 29 16-44 3-31 (182)
323 1sxj_B Activator 1 37 kDa subu 97.3 0.00015 5.1E-09 55.3 3.4 27 19-45 40-66 (323)
324 1oix_A RAS-related protein RAB 97.3 0.00015 5.1E-09 51.2 3.1 25 21-45 29-53 (191)
325 3d31_A Sulfate/molybdate ABC t 97.3 8.4E-05 2.9E-09 57.7 2.0 31 15-45 20-50 (348)
326 2wji_A Ferrous iron transport 97.3 0.00016 5.4E-09 49.7 3.2 23 21-43 3-25 (165)
327 2j37_W Signal recognition part 97.3 0.00019 6.5E-09 58.4 4.1 27 19-45 99-125 (504)
328 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0002 6.7E-09 61.4 4.3 32 20-51 486-518 (758)
329 3gd7_A Fusion complex of cysti 97.3 0.00015 5E-09 57.2 3.3 29 16-44 42-70 (390)
330 1yrb_A ATP(GTP)binding protein 97.3 0.00024 8.1E-09 52.7 4.3 28 18-45 11-38 (262)
331 1pui_A ENGB, probable GTP-bind 97.3 0.0001 3.5E-09 52.6 2.2 28 16-43 21-48 (210)
332 3ihw_A Centg3; RAS, centaurin, 97.3 0.00021 7.1E-09 50.1 3.7 26 18-43 17-42 (184)
333 2h57_A ADP-ribosylation factor 97.3 0.00014 4.9E-09 51.0 2.8 29 17-45 17-45 (190)
334 2wjg_A FEOB, ferrous iron tran 97.2 0.0002 7E-09 50.0 3.5 25 20-44 6-30 (188)
335 1xx6_A Thymidine kinase; NESG, 97.2 0.00032 1.1E-08 49.7 4.5 27 19-45 6-32 (191)
336 2lkc_A Translation initiation 97.2 0.00022 7.6E-09 49.3 3.6 25 19-43 6-30 (178)
337 3kta_A Chromosome segregation 97.2 0.0002 7E-09 50.0 3.4 26 21-46 26-51 (182)
338 3t5g_A GTP-binding protein RHE 97.2 0.00015 5E-09 50.5 2.6 25 19-43 4-28 (181)
339 1z2a_A RAS-related protein RAB 97.2 0.0002 6.9E-09 48.9 3.3 25 20-44 4-28 (168)
340 2iwr_A Centaurin gamma 1; ANK 97.2 0.00017 5.8E-09 50.0 3.0 26 19-44 5-30 (178)
341 2ged_A SR-beta, signal recogni 97.2 0.00026 8.8E-09 49.8 3.9 26 19-44 46-71 (193)
342 1gwn_A RHO-related GTP-binding 97.2 0.0002 6.7E-09 51.2 3.3 26 19-44 26-51 (205)
343 1j8m_F SRP54, signal recogniti 97.2 0.00027 9.3E-09 53.6 4.1 25 21-45 98-122 (297)
344 2f9l_A RAB11B, member RAS onco 97.2 0.00023 7.8E-09 50.5 3.5 23 22-44 6-28 (199)
345 2gj8_A MNME, tRNA modification 97.2 0.00024 8.2E-09 49.2 3.5 25 20-44 3-27 (172)
346 2qag_B Septin-6, protein NEDD5 97.2 0.00019 6.4E-09 57.1 3.2 29 16-44 35-65 (427)
347 1ls1_A Signal recognition part 97.2 0.00028 9.5E-09 53.6 4.1 26 20-45 97-122 (295)
348 1kao_A RAP2A; GTP-binding prot 97.2 0.00023 7.8E-09 48.5 3.3 24 21-44 3-26 (167)
349 1oxx_K GLCV, glucose, ABC tran 97.2 8.9E-05 3E-09 57.7 1.3 31 15-45 25-55 (353)
350 2fn4_A P23, RAS-related protei 97.2 0.00027 9.1E-09 48.9 3.7 26 19-44 7-32 (181)
351 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00013 4.4E-09 56.3 2.1 27 20-46 170-196 (330)
352 2npi_A Protein CLP1; CLP1-PCF1 97.2 0.00015 5.2E-09 58.4 2.6 29 17-45 134-162 (460)
353 2xxa_A Signal recognition part 97.2 0.00033 1.1E-08 56.0 4.5 27 19-45 98-124 (433)
354 1nrj_B SR-beta, signal recogni 97.2 0.0003 1E-08 50.5 3.9 27 19-45 10-36 (218)
355 1zd9_A ADP-ribosylation factor 97.2 0.00022 7.6E-09 50.0 3.1 25 19-43 20-44 (188)
356 1ky3_A GTP-binding protein YPT 97.2 0.00025 8.5E-09 49.1 3.3 25 20-44 7-31 (182)
357 1a5t_A Delta prime, HOLB; zinc 97.2 0.00031 1.1E-08 54.2 4.1 28 21-48 24-51 (334)
358 2dyk_A GTP-binding protein; GT 97.2 0.00029 9.8E-09 47.8 3.5 23 22-44 2-24 (161)
359 3pqc_A Probable GTP-binding pr 97.2 0.00033 1.1E-08 49.2 3.9 27 18-44 20-46 (195)
360 2ce2_X GTPase HRAS; signaling 97.2 0.00026 8.8E-09 48.1 3.3 23 22-44 4-26 (166)
361 2zr9_A Protein RECA, recombina 97.2 0.0003 1E-08 54.6 3.9 33 20-52 60-97 (349)
362 2oap_1 GSPE-2, type II secreti 97.1 0.00018 6.1E-09 58.8 2.6 28 19-46 258-285 (511)
363 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00015 5E-09 59.0 2.1 25 22-46 42-66 (500)
364 2hxs_A RAB-26, RAS-related pro 97.1 0.00032 1.1E-08 48.5 3.5 24 20-43 5-28 (178)
365 2erx_A GTP-binding protein DI- 97.1 0.00028 9.4E-09 48.4 3.2 23 21-43 3-25 (172)
366 1u8z_A RAS-related protein RAL 97.1 0.0003 1E-08 47.9 3.3 24 21-44 4-27 (168)
367 2b6h_A ADP-ribosylation factor 97.1 0.00043 1.5E-08 48.8 4.2 30 14-43 22-51 (192)
368 2nzj_A GTP-binding protein REM 97.1 0.00031 1E-08 48.4 3.3 23 21-43 4-26 (175)
369 3c5c_A RAS-like protein 12; GD 97.1 0.00031 1E-08 49.3 3.3 26 19-44 19-44 (187)
370 2oil_A CATX-8, RAS-related pro 97.1 0.00039 1.3E-08 48.9 3.8 24 20-43 24-47 (193)
371 3lda_A DNA repair protein RAD5 97.1 0.0003 1E-08 55.7 3.4 23 20-42 177-199 (400)
372 4dsu_A GTPase KRAS, isoform 2B 97.1 0.00027 9.3E-09 49.3 2.9 25 20-44 3-27 (189)
373 2rcn_A Probable GTPase ENGC; Y 97.1 0.00031 1.1E-08 54.6 3.5 26 20-45 214-239 (358)
374 1c1y_A RAS-related protein RAP 97.1 0.00034 1.1E-08 47.7 3.3 23 21-43 3-25 (167)
375 1qvr_A CLPB protein; coiled co 97.1 0.00025 8.5E-09 61.6 3.2 27 19-45 189-215 (854)
376 2o52_A RAS-related protein RAB 97.1 0.00028 9.5E-09 50.1 2.9 43 1-43 1-47 (200)
377 1tq4_A IIGP1, interferon-induc 97.1 0.00034 1.2E-08 55.5 3.6 26 20-45 68-93 (413)
378 1ksh_A ARF-like protein 2; sma 97.1 0.00038 1.3E-08 48.6 3.5 25 19-43 16-40 (186)
379 1fzq_A ADP-ribosylation factor 97.1 0.0004 1.4E-08 48.4 3.6 26 19-44 14-39 (181)
380 1v5w_A DMC1, meiotic recombina 97.1 0.00038 1.3E-08 54.0 3.8 26 19-44 120-145 (343)
381 3pxi_A Negative regulator of g 97.1 0.00041 1.4E-08 59.5 4.2 26 20-45 519-545 (758)
382 3lxx_A GTPase IMAP family memb 97.1 0.00033 1.1E-08 51.3 3.2 25 19-43 27-51 (239)
383 1moz_A ARL1, ADP-ribosylation 97.1 0.00034 1.2E-08 48.6 3.1 24 19-42 16-39 (183)
384 2yv5_A YJEQ protein; hydrolase 97.1 0.00038 1.3E-08 53.0 3.5 26 20-46 164-189 (302)
385 4bas_A ADP-ribosylation factor 97.1 0.00033 1.1E-08 49.4 3.0 27 17-43 13-39 (199)
386 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00044 1.5E-08 46.9 3.5 23 21-43 23-45 (149)
387 1w5s_A Origin recognition comp 97.1 0.00032 1.1E-08 55.3 3.3 26 20-45 49-76 (412)
388 2ffh_A Protein (FFH); SRP54, s 97.1 0.00045 1.5E-08 55.0 4.0 26 20-45 97-122 (425)
389 2f7s_A C25KG, RAS-related prot 97.1 0.00041 1.4E-08 49.8 3.5 24 20-43 24-47 (217)
390 2fna_A Conserved hypothetical 97.0 0.0005 1.7E-08 53.0 4.3 31 22-52 31-63 (357)
391 1u94_A RECA protein, recombina 97.0 0.00046 1.6E-08 53.7 3.9 33 20-52 62-99 (356)
392 1g16_A RAS-related protein SEC 97.0 0.0004 1.4E-08 47.5 3.3 23 21-43 3-25 (170)
393 2zej_A Dardarin, leucine-rich 97.0 0.00028 9.7E-09 49.3 2.5 22 22-43 3-24 (184)
394 3bc1_A RAS-related protein RAB 97.0 0.00039 1.3E-08 48.6 3.2 23 21-43 11-33 (195)
395 3dz8_A RAS-related protein RAB 97.0 0.00032 1.1E-08 49.3 2.7 26 20-45 22-47 (191)
396 1z08_A RAS-related protein RAB 97.0 0.00038 1.3E-08 47.7 3.0 24 21-44 6-29 (170)
397 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00032 1.1E-08 48.4 2.6 23 21-43 7-29 (177)
398 1m2o_B GTP-binding protein SAR 97.0 0.00044 1.5E-08 48.7 3.4 24 20-43 22-45 (190)
399 3bh0_A DNAB-like replicative h 97.0 0.00054 1.9E-08 52.4 4.1 27 19-45 66-92 (315)
400 1ko7_A HPR kinase/phosphatase; 97.0 0.00051 1.7E-08 52.3 3.8 32 20-52 143-174 (314)
401 3q72_A GTP-binding protein RAD 97.0 0.00048 1.6E-08 47.0 3.4 21 22-42 3-23 (166)
402 2z43_A DNA repair and recombin 97.0 0.00043 1.5E-08 53.2 3.4 26 20-45 106-131 (324)
403 2j0v_A RAC-like GTP-binding pr 97.0 0.00055 1.9E-08 48.9 3.8 28 16-43 4-31 (212)
404 2bme_A RAB4A, RAS-related prot 97.0 0.00044 1.5E-08 48.1 3.2 25 20-44 9-33 (186)
405 2gco_A H9, RHO-related GTP-bin 97.0 0.00044 1.5E-08 49.1 3.2 23 21-43 25-47 (201)
406 1ek0_A Protein (GTP-binding pr 97.0 0.00038 1.3E-08 47.6 2.8 23 22-44 4-26 (170)
407 1ega_A Protein (GTP-binding pr 97.0 0.00037 1.3E-08 53.0 3.0 25 19-43 6-30 (301)
408 3k53_A Ferrous iron transport 97.0 0.00048 1.6E-08 51.5 3.6 24 21-44 3-26 (271)
409 3tw8_B RAS-related protein RAB 97.0 0.00038 1.3E-08 48.2 2.8 24 20-43 8-31 (181)
410 1z0j_A RAB-22, RAS-related pro 97.0 0.00038 1.3E-08 47.6 2.8 24 21-44 6-29 (170)
411 2a9k_A RAS-related protein RAL 97.0 0.00048 1.7E-08 47.9 3.3 25 20-44 17-41 (187)
412 1m7b_A RND3/RHOE small GTP-bin 97.0 0.00048 1.6E-08 48.1 3.3 25 20-44 6-30 (184)
413 2gf0_A GTP-binding protein DI- 97.0 0.00065 2.2E-08 47.8 4.0 25 19-43 6-30 (199)
414 2q3h_A RAS homolog gene family 97.0 0.00053 1.8E-08 48.5 3.5 26 18-43 17-42 (201)
415 1ojl_A Transcriptional regulat 97.0 0.0005 1.7E-08 52.3 3.5 26 20-45 24-49 (304)
416 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00054 1.8E-08 58.7 4.0 27 19-45 205-231 (758)
417 3q85_A GTP-binding protein REM 97.0 0.00055 1.9E-08 46.8 3.4 22 22-43 3-24 (169)
418 3k1j_A LON protease, ATP-depen 97.0 0.00039 1.3E-08 58.0 3.1 26 21-46 60-85 (604)
419 3lxw_A GTPase IMAP family memb 97.0 0.00047 1.6E-08 50.8 3.2 27 17-43 17-43 (247)
420 2i1q_A DNA repair and recombin 97.0 0.00054 1.8E-08 52.6 3.6 25 20-44 97-121 (322)
421 1qvr_A CLPB protein; coiled co 97.0 0.00046 1.6E-08 59.9 3.6 26 20-45 586-612 (854)
422 3llu_A RAS-related GTP-binding 97.0 0.00037 1.3E-08 49.3 2.5 29 17-45 16-44 (196)
423 1r2q_A RAS-related protein RAB 96.9 0.00044 1.5E-08 47.2 2.8 23 21-43 6-28 (170)
424 1zj6_A ADP-ribosylation factor 96.9 0.00064 2.2E-08 47.5 3.7 26 18-43 13-38 (187)
425 1vg8_A RAS-related protein RAB 96.9 0.00053 1.8E-08 48.7 3.3 25 20-44 7-31 (207)
426 2bov_A RAla, RAS-related prote 96.9 0.0006 2.1E-08 48.3 3.6 25 20-44 13-37 (206)
427 3kkq_A RAS-related protein M-R 96.9 0.00066 2.2E-08 47.2 3.7 24 21-44 18-41 (183)
428 2y8e_A RAB-protein 6, GH09086P 96.9 0.00047 1.6E-08 47.6 2.9 22 22-43 15-36 (179)
429 2efe_B Small GTP-binding prote 96.9 0.00049 1.7E-08 47.7 3.0 23 21-43 12-34 (181)
430 3t1o_A Gliding protein MGLA; G 96.9 0.00038 1.3E-08 48.9 2.5 26 21-46 14-39 (198)
431 3q3j_B RHO-related GTP-binding 96.9 0.00067 2.3E-08 48.7 3.7 27 18-44 24-50 (214)
432 2fh5_B SR-beta, signal recogni 96.9 0.0006 2.1E-08 48.8 3.5 26 19-44 5-30 (214)
433 2obl_A ESCN; ATPase, hydrolase 96.9 0.00064 2.2E-08 52.7 3.7 31 16-46 66-96 (347)
434 2r8r_A Sensor protein; KDPD, P 96.9 0.00096 3.3E-08 48.3 4.4 24 22-45 7-30 (228)
435 3tkl_A RAS-related protein RAB 96.9 0.00057 2E-08 48.0 3.2 25 20-44 15-39 (196)
436 2ew1_A RAS-related protein RAB 96.9 0.00054 1.8E-08 48.8 3.1 25 20-44 25-49 (201)
437 2fv8_A H6, RHO-related GTP-bin 96.9 0.00052 1.8E-08 48.9 3.0 24 20-43 24-47 (207)
438 3b5x_A Lipid A export ATP-bind 96.9 0.00049 1.7E-08 57.2 3.2 28 18-45 366-393 (582)
439 2hup_A RAS-related protein RAB 96.9 0.00053 1.8E-08 48.7 3.0 24 20-43 28-51 (201)
440 2g6b_A RAS-related protein RAB 96.9 0.00055 1.9E-08 47.3 3.0 24 20-43 9-32 (180)
441 1f6b_A SAR1; gtpases, N-termin 96.9 0.00056 1.9E-08 48.5 3.1 25 19-43 23-47 (198)
442 2dpy_A FLII, flagellum-specifi 96.9 0.00071 2.4E-08 54.1 3.9 31 16-46 152-182 (438)
443 3e1s_A Exodeoxyribonuclease V, 96.9 0.0007 2.4E-08 56.1 4.0 25 21-45 204-228 (574)
444 2xtp_A GTPase IMAP family memb 96.9 0.00071 2.4E-08 50.1 3.7 26 19-44 20-45 (260)
445 1u0l_A Probable GTPase ENGC; p 96.9 0.00059 2E-08 51.9 3.3 25 21-45 169-193 (301)
446 3b60_A Lipid A export ATP-bind 96.9 0.00044 1.5E-08 57.4 2.7 29 17-45 365-393 (582)
447 2r6a_A DNAB helicase, replicat 96.9 0.00081 2.8E-08 54.1 4.2 26 20-45 202-227 (454)
448 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00062 2.1E-08 47.3 3.1 23 21-43 5-27 (186)
449 3euj_A Chromosome partition pr 96.9 0.00061 2.1E-08 55.0 3.4 28 17-45 26-53 (483)
450 4gzl_A RAS-related C3 botulinu 96.9 0.00078 2.7E-08 47.9 3.6 25 19-43 28-52 (204)
451 2fg5_A RAB-22B, RAS-related pr 96.9 0.00058 2E-08 48.0 2.9 25 20-44 22-46 (192)
452 3ozx_A RNAse L inhibitor; ATP 96.9 0.00061 2.1E-08 56.0 3.4 26 20-45 24-49 (538)
453 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.0008 2.7E-08 53.0 3.9 25 19-43 18-42 (392)
454 2atx_A Small GTP binding prote 96.9 0.00048 1.7E-08 48.4 2.5 25 20-44 17-41 (194)
455 1r8s_A ADP-ribosylation factor 96.9 0.00074 2.5E-08 45.9 3.3 22 23-44 2-23 (164)
456 3reg_A RHO-like small GTPase; 96.9 0.00061 2.1E-08 47.9 3.0 25 20-44 22-46 (194)
457 3qf4_B Uncharacterized ABC tra 96.8 0.00051 1.7E-08 57.3 2.8 29 17-45 377-405 (598)
458 2j9r_A Thymidine kinase; TK1, 96.8 0.0014 4.7E-08 47.1 4.7 28 18-45 25-52 (214)
459 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00073 2.5E-08 55.6 3.6 27 19-45 45-71 (538)
460 2j1l_A RHO-related GTP-binding 96.8 0.00074 2.5E-08 48.4 3.3 24 20-43 33-56 (214)
461 3upu_A ATP-dependent DNA helic 96.8 0.00079 2.7E-08 54.3 3.7 23 23-45 47-69 (459)
462 2yl4_A ATP-binding cassette SU 96.8 0.00046 1.6E-08 57.5 2.4 29 17-45 366-394 (595)
463 2cxx_A Probable GTP-binding pr 96.8 0.00073 2.5E-08 47.1 3.1 23 22-44 2-24 (190)
464 2qu8_A Putative nucleolar GTP- 96.8 0.00089 3E-08 48.5 3.6 25 19-43 27-51 (228)
465 3cbq_A GTP-binding protein REM 96.8 0.00059 2E-08 48.3 2.5 22 21-42 23-44 (195)
466 3cph_A RAS-related protein SEC 96.8 0.00098 3.3E-08 47.5 3.7 25 19-43 18-42 (213)
467 1t9h_A YLOQ, probable GTPase E 96.8 0.00025 8.6E-09 54.0 0.5 25 20-44 172-196 (307)
468 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00092 3.1E-08 52.2 3.7 27 19-45 31-57 (362)
469 3b1v_A Ferrous iron uptake tra 96.8 0.00093 3.2E-08 50.0 3.5 24 21-44 3-26 (272)
470 2bcg_Y Protein YP2, GTP-bindin 96.8 0.00084 2.9E-08 47.7 3.2 23 21-43 8-30 (206)
471 1xp8_A RECA protein, recombina 96.8 0.001 3.6E-08 51.9 3.9 34 20-53 73-111 (366)
472 1tf7_A KAIC; homohexamer, hexa 96.8 0.00081 2.8E-08 55.1 3.4 23 19-41 37-59 (525)
473 3a1s_A Iron(II) transport prot 96.8 0.0007 2.4E-08 50.3 2.8 23 21-43 5-27 (258)
474 3iev_A GTP-binding protein ERA 96.8 0.00073 2.5E-08 51.5 2.9 27 17-43 6-32 (308)
475 4dhe_A Probable GTP-binding pr 96.8 0.00052 1.8E-08 49.4 2.0 28 17-44 25-52 (223)
476 3io5_A Recombination and repai 96.8 0.00096 3.3E-08 50.9 3.5 23 23-45 30-52 (333)
477 1knx_A Probable HPR(Ser) kinas 96.8 0.00092 3.2E-08 50.8 3.4 32 20-52 146-177 (312)
478 2qnr_A Septin-2, protein NEDD5 96.8 0.0008 2.7E-08 51.1 3.1 24 20-43 17-40 (301)
479 1x3s_A RAS-related protein RAB 96.8 0.00077 2.6E-08 47.2 2.8 24 21-44 15-38 (195)
480 2a5y_B CED-4; apoptosis; HET: 96.7 0.001 3.6E-08 54.8 3.8 24 20-43 151-174 (549)
481 3j16_B RLI1P; ribosome recycli 96.7 0.00098 3.3E-08 55.6 3.6 27 19-45 101-127 (608)
482 3qks_A DNA double-strand break 96.7 0.0011 3.8E-08 47.3 3.5 26 21-46 23-48 (203)
483 2x77_A ADP-ribosylation factor 96.7 0.00079 2.7E-08 47.1 2.6 24 19-42 20-43 (189)
484 4a82_A Cystic fibrosis transme 96.7 0.00041 1.4E-08 57.6 1.2 29 17-45 363-391 (578)
485 1z6t_A APAF-1, apoptotic prote 96.7 0.0011 3.7E-08 55.1 3.7 25 19-43 145-169 (591)
486 1zbd_A Rabphilin-3A; G protein 96.7 0.001 3.4E-08 47.1 3.1 23 21-43 8-30 (203)
487 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00082 2.8E-08 55.3 2.9 26 20-45 311-336 (538)
488 1tf7_A KAIC; homohexamer, hexa 96.7 0.0012 4.1E-08 54.1 3.8 27 19-45 279-305 (525)
489 2q6t_A DNAB replication FORK h 96.7 0.0014 4.7E-08 52.6 4.1 26 20-45 199-224 (444)
490 4a1f_A DNAB helicase, replicat 96.7 0.0015 5.1E-08 50.4 4.1 26 20-45 45-70 (338)
491 3ozx_A RNAse L inhibitor; ATP 96.7 0.00089 3E-08 55.0 3.0 27 19-45 292-318 (538)
492 3bk7_A ABC transporter ATP-bin 96.7 0.00084 2.9E-08 56.0 2.9 27 19-45 380-406 (607)
493 3iby_A Ferrous iron transport 96.7 0.0011 3.8E-08 49.1 3.2 23 22-44 2-24 (256)
494 2cjw_A GTP-binding protein GEM 96.6 0.0015 5.1E-08 46.0 3.6 23 22-44 7-29 (192)
495 2il1_A RAB12; G-protein, GDP, 96.6 0.001 3.6E-08 46.7 2.8 23 21-43 26-48 (192)
496 3fkq_A NTRC-like two-domain pr 96.6 0.075 2.6E-06 41.5 13.6 37 17-53 139-181 (373)
497 3gj0_A GTP-binding nuclear pro 96.6 0.0014 4.8E-08 47.1 3.6 26 20-45 14-40 (221)
498 3qf4_A ABC transporter, ATP-bi 96.6 0.0006 2.1E-08 56.7 1.7 29 17-45 365-393 (587)
499 4dey_A Voltage-dependent L-typ 96.6 0.028 9.4E-07 43.1 10.6 160 24-202 145-320 (337)
500 3bk7_A ABC transporter ATP-bin 96.6 0.0011 3.6E-08 55.4 3.1 27 19-45 115-141 (607)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=1.2e-37 Score=226.88 Aligned_cols=187 Identities=46% Similarity=0.749 Sum_probs=170.9
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (209)
.-...+|++|+|.|||||||+|+|+.|+++||++++|.+|++|..+..++..+..+..++..+..+|+++...++.+.+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~ 102 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI 102 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 95 ESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 95 ~~~--~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
+.. ..++|+||||++..+...|.. ....++++|+|++|.+++.+|+..| ..+|.++.++.+.+|+..|++...|+
T Consensus 103 ~~~~~~~g~ilDGfPRt~~Qa~~l~~-~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl 181 (217)
T 3umf_A 103 KLVDKNCHFLIDGYPRELDQGIKFEK-EVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPV 181 (217)
T ss_dssp HHTTTCSEEEEETBCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHH
T ss_pred hccccccCcccccCCCcHHHHHHHHH-hCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 533 678999999999999999988 7888999999999999999999999 44678888999999999999999999
Q ss_pred HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.++|.+.+.++.||++.++++++++|.+.|.+
T Consensus 182 ~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 182 IEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=2.9e-35 Score=213.38 Aligned_cols=179 Identities=34% Similarity=0.700 Sum_probs=164.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
|+|+|.|||||||+|+|+.|++++|++++|+++++|+.+..++..+.....++..+..+|++++..++...+.. ..++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~ 78 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV 78 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999864 5679
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC------------------CCCCCcHHHH
Q 028388 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ------------------GREDDNVETI 156 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r----~~------------------~~~~~~~~~~ 156 (209)
|+||||++..+...|... ....++.+|+|++|.+++.+|+..| .. .|.++..+.+
T Consensus 79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i 158 (206)
T 3sr0_A 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI 158 (206)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence 999999999999887653 5568999999999999999999998 11 2667889999
Q ss_pred HHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.+|+..|++...|+.++|.+.+.++.||++.++++++++|.+.|..
T Consensus 159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998865
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=3.2e-33 Score=204.02 Aligned_cols=181 Identities=33% Similarity=0.593 Sum_probs=150.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND 99 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 99 (209)
.+.+.|.|+|||||||+|+.|++++|+++++.++++++.+..++..+..+.+++..+..+|++++..++.+.+.+.. ..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999998643 57
Q ss_pred eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----cC-------------------------CCCC
Q 028388 100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRED 150 (209)
Q Consensus 100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r----~~-------------------------~~~~ 150 (209)
++|+||||++..+...|.. ....++.+|+|++|++++.+|+.+| .. .|.+
T Consensus 88 g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D 166 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD 166 (230)
T ss_dssp CEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred CeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence 8999999999999999887 7778999999999999999999999 22 2778
Q ss_pred CcHHHHHHHHHHHHhhchhHHHHHhhc-----------CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 151 DNVETIRKRFKVFLESSLPVVQYYEAK-----------GKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
+.++.+.+|+..|++...|+.++|... +.+..||++.+++++++.|.+.+.+
T Consensus 167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999999973 6789999999999999999988764
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.98 E-value=2.2e-30 Score=193.16 Aligned_cols=184 Identities=32% Similarity=0.602 Sum_probs=163.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+.+|++|+|+|+|||||||+|+.|++++|+++++.|++++..+..++..+..+.+++..+...+++.+..++...+....
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 56789999999999999999999999999999999999999888889999999999999999999999888888887533
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-C--------------------------
Q 028388 98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q-------------------------- 146 (209)
Q Consensus 98 -~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-~-------------------------- 146 (209)
+.++|+||||+...+...+... ....|+.+|+|++|++++.+|+.+|. .
T Consensus 106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 185 (243)
T 3tlx_A 106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP 185 (243)
T ss_dssp GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccccc
Confidence 7889999999999888776653 34678999999999999999999881 1
Q ss_pred --CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
.|.++..+.+.+|+..|++...++.++|...+.++.+|++.++++++++|.+.|.
T Consensus 186 l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 186 LIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 2556788999999999999999999999988889999999999999999988764
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.97 E-value=7.2e-29 Score=181.96 Aligned_cols=181 Identities=30% Similarity=0.612 Sum_probs=160.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 100 (209)
+.|+|+|+|||||||+|+.|++++|+.+++.|+++++.+..++..+..+.+.+..+...+++....++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 4689999999999999999999999999999999999989899999999999999999999998888888887533 789
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028388 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-----------------------------~~~ 148 (209)
+|+||||....+...+... ....|+.+|+|++|++++.+|+..|. .+|
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 9999999999887766653 34568999999999999999999871 134
Q ss_pred CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.++..+.+.+|+..|.+...++.++|...+.++.+|++.++++++++|.+.|..
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 677889999999999999999999999888899999999999999999998864
No 6
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.97 E-value=1.1e-28 Score=178.32 Aligned_cols=184 Identities=43% Similarity=0.829 Sum_probs=153.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES- 96 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 96 (209)
|.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....++..+..+.+.+..+...+.+....++...+...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~ 85 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV 85 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999999999887777788888888887788888877777777766532
Q ss_pred -CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388 97 -GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQY 173 (209)
Q Consensus 97 -~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (209)
.+.++|+||+|....+...+.. ....|+++|||++|++++.+|+..| ..++.++..+.+.+++..+.....++.+.
T Consensus 86 ~~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 164 (196)
T 2c95_A 86 NTSKGFLIDGYPREVQQGEEFER-RIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF 164 (196)
T ss_dssp TTCSCEEEESCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCcEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999888777766 4567899999999999999999988 22344456778888998888888887777
Q ss_pred HhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
|...+.++.+|++.++++++++|.+.+..
T Consensus 165 ~~~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 165 YEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 77666677899989999999999988754
No 7
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.97 E-value=1.4e-28 Score=180.38 Aligned_cols=181 Identities=31% Similarity=0.637 Sum_probs=159.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 100 (209)
+.|+|+|+|||||||+|+.|++.+|+.+++.|++++..+..++..+..+.+.+..+...+++....++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 4689999999999999999999999999999999999989888999999999999999999998888888887533 789
Q ss_pred EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028388 101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR 148 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-----------------------------~~~ 148 (209)
+|+||+|....+...+... ....++.+|+|++|++++.+|+.+|. .+|
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 9999999999887776653 34468999999999999999999871 123
Q ss_pred CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.++..+.+.+|+..|.+...++.++|...+.++.+|++.++++++++|.+.|..
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 567788999999999999999999999888899999999999999999988764
No 8
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=1.4e-28 Score=180.52 Aligned_cols=181 Identities=33% Similarity=0.649 Sum_probs=151.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN 98 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 98 (209)
++++|+|+|+|||||||+++.|++++|+.+++.|++++.....++..+..+.+.+..+...+++....++...+... .+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 83 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV 83 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence 35789999999999999999999999999999999999988888888888888888888888888888888877642 27
Q ss_pred CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-cC----------------------------
Q 028388 99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-NQ---------------------------- 146 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r-~~---------------------------- 146 (209)
.++|+||||++..+...+..+ ....|+++|||++|++++.+|+..| ..
T Consensus 84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 163 (217)
T 3be4_A 84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLV 163 (217)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCB
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccc
Confidence 889999999998777665531 4567899999999999999999987 11
Q ss_pred CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
.+.++..+.+.+++..|.+...++.++|...+.++.+|++.+++++++.|.+.|
T Consensus 164 ~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 164 WRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp CCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 122345677888999999999999898987778899999999999999998764
No 9
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.97 E-value=3.4e-28 Score=176.47 Aligned_cols=196 Identities=30% Similarity=0.583 Sum_probs=150.5
Q ss_pred CCccccCcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC
Q 028388 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV 80 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (209)
||.--+-|-. ..+.....+|++|+|+|+|||||||+++.|++.+++++++.|++++..+..++..+..+.+.+..+...
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~ 79 (201)
T 2cdn_A 1 MGSSHHHHHH-SSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV 79 (201)
T ss_dssp ----------------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCccccccc-cccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcc
Confidence 4554444433 233445667899999999999999999999999999999999999987777888888888888888888
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028388 81 PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI 156 (209)
Q Consensus 81 ~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~ 156 (209)
+.+....++.+.+... .+.++|+||++....+...+..+ ....|+.+|||++|++++.+|+..| +++++..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~ 157 (201)
T 2cdn_A 80 PSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVI 157 (201)
T ss_dssp CHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHH
Confidence 8887777777765432 26789999999988776655442 3356889999999999999999998 6766677888
Q ss_pred HHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
.+++..|.....++.+.+ ...++++|++.+++++.++|.+.+.
T Consensus 158 ~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 158 LNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 888888888777776666 3457889998999999999998875
No 10
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.97 E-value=3.5e-28 Score=178.82 Aligned_cols=183 Identities=26% Similarity=0.559 Sum_probs=155.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hc-C
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES-G 97 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~-~ 97 (209)
++++|+|+|+|||||||+++.|++.+++.+++.|+++++....++..+..+.+.+..+...+++....++...+. .. .
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 468899999999999999999999999999999999999888888889889998988888899888888888776 21 2
Q ss_pred CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-cC---------------------------
Q 028388 98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-NQ--------------------------- 146 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r-~~--------------------------- 146 (209)
+.++|+|||+....+...+..+ ....|+++|||++|++++.+|+..| ..
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l 162 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 162 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence 5789999999988776655432 3567899999999999999999887 11
Q ss_pred -CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.+.++..+.+.+++..|.+...++.++|...+.++.+|++.+++++++.|.+.|..
T Consensus 163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK 219 (220)
T ss_dssp BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 13456678889999999999888888888777789999999999999999988754
No 11
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.97 E-value=6.7e-28 Score=173.67 Aligned_cols=184 Identities=55% Similarity=0.939 Sum_probs=154.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (209)
+.+++|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+.+....++...+....+
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 83 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG 83 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCC
Confidence 34679999999999999999999999999999999999988667778888888888888888888878888887765567
Q ss_pred CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388 99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYY 174 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (209)
..+|+||+|....+...+... ....|+++|||++|++++.+|+..| ..++.++..+.+.+++..+.+...++.+.+
T Consensus 84 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~ 163 (194)
T 1qf9_A 84 KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY 163 (194)
T ss_dssp CCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999998877766542 2236889999999999999999988 234566678889999998888777877777
Q ss_pred hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...+.++++|++.+++++.++|.+.+..
T Consensus 164 ~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 164 NKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 7666678899989999999999988754
No 12
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.97 E-value=1.1e-27 Score=177.68 Aligned_cols=185 Identities=34% Similarity=0.615 Sum_probs=156.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+.+++.|+|+|+|||||||+++.|++++++.+++.|+++++.+..++..+..+.+.+..+...+++....++...+....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 34568999999999999999999999999999999999999888888888889998888888899988888888876432
Q ss_pred -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-C-----------------------C--
Q 028388 98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q-----------------------G-- 147 (209)
Q Consensus 98 -~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-~-----------------------~-- 147 (209)
+.++|+|||+++..+...+.++ ....++++|||++|++++.+|+..|. . +
T Consensus 93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 172 (233)
T 1ak2_A 93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP 172 (233)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence 5689999999998777655442 34578999999999999999998871 1 1
Q ss_pred ---CCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 148 ---REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 148 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
+.++..+.+.+++..|.+...++.++|...+.++.+|++.++++++++|.+.+..
T Consensus 173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 3456678889999999988888888888777789999999999999999988754
No 13
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.96 E-value=4.5e-28 Score=177.50 Aligned_cols=178 Identities=37% Similarity=0.673 Sum_probs=152.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 100 (209)
+.|+|+|+|||||||+++.|++.+|+.+++.|+++++.+..++..+..+.+.+..+...+++.+..++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 3589999999999999999999999999999999999888888888878888877888888888888888876432 467
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cC----------------------------CCCCC
Q 028388 101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQ----------------------------GREDD 151 (209)
Q Consensus 101 ~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~----------------------------~~~~~ 151 (209)
+|+||||+...+...+.. ....|+++|+|++|++++.+|+..| .. .|.++
T Consensus 81 ~i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd 159 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD 159 (214)
T ss_dssp EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred EEEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence 999999999888777766 5567899999999999999999877 11 25567
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhc-----CcEEEEcCCCChHHHHHHHHHhc
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAK-----GKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~ee~~~~i~~~i 200 (209)
..+.+.+|+..|.+...++.++|... +.++.+|++.++++++++|.+.|
T Consensus 160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 78899999999999999998888764 57889999999999999998876
No 14
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.96 E-value=7e-28 Score=174.41 Aligned_cols=183 Identities=39% Similarity=0.766 Sum_probs=148.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-- 96 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 96 (209)
+.+++|+|+|+|||||||+++.|++++|+.+++.|++++.....+...+..+.+.+..+...+.+.....+.+.+...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 89 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLG 89 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccc
Confidence 346899999999999999999999999999999999998886667777888888888788888887777777766543
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYY 174 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (209)
.+..+|+||++....+...+.. ....|+++|||++|++++.+|+..|.. ++.++..+.+.+++..+.....++.++|
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 168 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGR-RIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYY 168 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999888777766 444788999999999999999998811 1222244677788877888777777777
Q ss_pred hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...+.++++|++.++++++++|.+.+..
T Consensus 169 ~~~~~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 169 ETKTQLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp HHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 7666678899989999999999988754
No 15
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.96 E-value=4e-27 Score=171.05 Aligned_cols=185 Identities=49% Similarity=0.930 Sum_probs=150.8
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH-cCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
.+.++++|+|+|+|||||||+++.|++.+|+.+++.|++++.... .+...+..+..++..+...+.+....++...+..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~ 90 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD 90 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 356678999999999999999999999999999999999988654 4677778888888777777777666666555432
Q ss_pred c--CC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 96 S--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 96 ~--~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
. .+ ..+|+||++........+.. ....++++|||++|++++.+|+..| ..++.++..+.+.+++..|.+...++
T Consensus 91 ~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~ 169 (203)
T 1ukz_A 91 NVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPV 169 (203)
T ss_dssp HHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHH
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHH
Confidence 1 23 68999999999887777766 4556899999999999999999988 23455667888888998888888888
Q ss_pred HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
.++|...+.++.+|++.++++++++|.+.+..
T Consensus 170 ~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 170 IEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 78777677778899999999999999988754
No 16
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.96 E-value=6.1e-27 Score=168.90 Aligned_cols=183 Identities=56% Similarity=0.962 Sum_probs=146.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---- 94 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 94 (209)
+|++|+|+|+|||||||+++.|++.+|+++++.|++++..... ++.++..+.+.+..+...+.+....++...+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 4789999999999999999999999999999999999887654 55667777777777777777665544444332
Q ss_pred hc-CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchh
Q 028388 95 ES-GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP 169 (209)
Q Consensus 95 ~~-~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (209)
.. .+..+|+||++....+...+... ....++++|||++|++++.+|+..| ..+++++..+.+.+++..|.....+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 21 37899999999998876655442 2235788999999999999999988 3367777788888899999998888
Q ss_pred HHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 170 ~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
+.++|...+.++++|++.++++++++|.+.+..
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 888888777788999999999999999988753
No 17
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.96 E-value=1.5e-27 Score=175.64 Aligned_cols=179 Identities=27% Similarity=0.524 Sum_probs=149.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
++|+|+|+|||||||+++.|++.+|+.+++.|+++++.+..++..+..+.+.+..+...+++.+..++...+....+.++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 47999999999999999999999999999999999998777778888888888888888888888888888764337899
Q ss_pred EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc---C--C--------------------------
Q 028388 102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN---Q--G-------------------------- 147 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~---~--~-------------------------- 147 (209)
|+|||+....+...+... ....|+++|||++|++++.+|+..|. . +
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~ 160 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA 160 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence 999999998777766542 34579999999999999999999881 1 1
Q ss_pred CCCCcHH-HHHHHHHHHHhhchhHHH---HHhh-----cCcEEEEcCCCChHHHHHHHHHhc
Q 028388 148 REDDNVE-TIRKRFKVFLESSLPVVQ---YYEA-----KGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 148 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
+.++..+ .+.+|+..|++...|+.+ +|.. .+.++.+|++.+++++++.|.+.|
T Consensus 161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1123356 888999999999988888 8876 567899999999999999998876
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.96 E-value=3.5e-27 Score=169.08 Aligned_cols=179 Identities=34% Similarity=0.696 Sum_probs=145.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (209)
.++++|+|+|+|||||||+++.|++++|+.+++.|++++..+..++..+..+.+.+..+...+++.....+...+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~---- 77 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA---- 77 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence 4578999999999999999999999999999999999998877788788888888888888888777766665543
Q ss_pred CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388 99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQY 173 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (209)
.++|+||++....+...+..+ ....|+.+|||++|++++.+|+..|. .++.++..+.+.+++..|.....++.+.
T Consensus 78 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~ 157 (186)
T 3cm0_A 78 ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY 157 (186)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999887765544331 22347899999999999999999882 2466677888888888888777777777
Q ss_pred HhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
|...+.++.+|++.+++++.++|.+.+.
T Consensus 158 ~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 158 YEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp HHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 7766668899998999999999988763
No 19
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.96 E-value=4.7e-27 Score=173.56 Aligned_cols=184 Identities=32% Similarity=0.584 Sum_probs=151.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
++++++|+|+|+|||||||+++.|++.+|+.+++.|++++.....++..+..+.+++..+...+++....++.+.+....
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 83 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLT 83 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCT
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999999999877788888888888887888888877777777666433
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc----CC-------------------------C
Q 028388 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----QG-------------------------R 148 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~----~~-------------------------~ 148 (209)
+..+|+|+++....+...+.. ...++++|||++|++++.+|+..|. .+ |
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r 161 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQR 161 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHT--TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred CCCEEEeCCCCCHHHHHHHHH--hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCC
Confidence 578999999988777665554 3568899999999999999998771 12 2
Q ss_pred CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.++..+.+.+++..|.+...++..+|...+.++.+|++ ++++++++|.+.+....
T Consensus 162 ~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~ 216 (227)
T 1zd8_A 162 EDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV 216 (227)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence 34567888999999999888888888877778999998 99999999999987644
No 20
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.95 E-value=1.6e-26 Score=170.18 Aligned_cols=183 Identities=31% Similarity=0.625 Sum_probs=147.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-- 96 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 96 (209)
++|++|+|+|+|||||||+++.|++++++.+++.|++++.....++..+..+.+++..+...+++....++.+.+...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 456789999999999999999999999999999999999877778888888888888888888888777777666431
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cC---C---------------------CCCC
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQ---G---------------------REDD 151 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~---~---------------------~~~~ 151 (209)
...++|+||++....+...+.. ....|+++|||+++++++.+|+..| .. + +..+
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d 161 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD 161 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred cCCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence 1456788999998877777766 5567899999999999999999877 11 1 1234
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
..+.+.+|+..|+....++..+|.. .++.+|++.+++++++.|.+.+....
T Consensus 162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l 212 (222)
T 1zak_A 162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSIL 212 (222)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhc
Confidence 5567888888888877776665543 47889999999999999998886543
No 21
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.90 E-value=6e-22 Score=140.32 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC----CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG----SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
++|+|+|+|||||||+++.| +.+|+.+++.++++++..... ............. .........+...+....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 77 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN 77 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999 999999999999999875542 1222222222211 112334555666664445
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC--CCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE--DDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
+..+|+||+ ....+...+.. ....++++|||++|++++.+|+..| +++ ....+.+.+++...... +... +.
T Consensus 78 ~~~vi~dg~-~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~r~~~~~~~--~~~~-~~ 150 (179)
T 3lw7_A 78 HDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIER--LRSDDSKEISELIRRDREELKL--GIGE-VI 150 (179)
T ss_dssp CSCEEEECC-CCHHHHHHHHH-HHCSCEEEEEEECCHHHHHHHHHTC--C----CCCHHHHHHHHHHHHHH--THHH-HH
T ss_pred CCeEEEeCC-CCHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHHHhc--cCCCCcchHHHHHHHHHhhhcc--ChHh-HH
Confidence 789999998 88888888877 4457889999999999999999998 443 24566666665332211 1222 33
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.... +++|++.+++++.++|.+.+...
T Consensus 151 ~~ad-~vId~~~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 151 AMAD-YIITNDSNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp HTCS-EEEECCSCHHHHHHHHHHHHHHH
T ss_pred HhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 3333 45666669999999999887653
No 22
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.89 E-value=6.5e-21 Score=142.23 Aligned_cols=183 Identities=31% Similarity=0.602 Sum_probs=141.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN 98 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (209)
.+|.+|+|.|+|||||||+++.|++++|+..++.|+++..........+..+...+..+...+.....+.+...+....+
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 35789999999999999999999999999999999998876555555666666666667777777777767666554345
Q ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c---CC-------------------------CC
Q 028388 99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N---QG-------------------------RE 149 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~---~~-------------------------~~ 149 (209)
.++++||++....+...+.. ...++++|+|++|++++.+|+..| . .+ ..
T Consensus 105 ~~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld 182 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred CeEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence 67889999877655444443 356789999999999999998776 1 11 22
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.+..+.+.+++..|.+...++..+|...+.++.+|++.+ +++++.|.+.+....
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~ 236 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKI 236 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhC
Confidence 335577888888888888888888888778899999877 999999998886543
No 23
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.86 E-value=3.2e-20 Score=134.36 Aligned_cols=168 Identities=16% Similarity=0.295 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH------------HH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------------IK 87 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 87 (209)
.+|+|+|++||||||+++.|++.| |..++.... +.++..+..+++.+..+...+.... ..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~ 76 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 76 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 444443211 3345566666666665554443221 11
Q ss_pred HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--
Q 028388 88 LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD-- 151 (209)
Q Consensus 88 ~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~-- 151 (209)
.+...+. .+..||+|+|..+ .++...+... ....||++|||++|++++.+|+.+| ++..+
T Consensus 77 ~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r--~~~~dr~ 152 (205)
T 4hlc_A 77 KVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN--SRDQNRL 152 (205)
T ss_dssp THHHHHH--TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---------C
T ss_pred HHHHHHH--cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhc--CCcccch
Confidence 1222222 4889999976422 2333333322 5678999999999999999999988 43322
Q ss_pred --cHHHHHHHHHHHHhhchhHHHHHh-hcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388 152 --NVETIRKRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
....++++....+. +... ....+++||++.+++++.+.|.+.|.+..+
T Consensus 153 e~~~~~f~~~v~~~Y~------~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 153 DQEDLKFHEKVIEGYQ------EIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp CHHHHHHHHHHHHHHH------HHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHH------HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 12233333322111 1122 234689999999999999999888765443
No 24
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.85 E-value=1.6e-19 Score=133.09 Aligned_cols=176 Identities=16% Similarity=0.283 Sum_probs=110.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-HHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-IKLLQKAME 94 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ 94 (209)
+.++++|+|+|+|||||||+++.|++.++ +.++.... +.++..+..+++++..+........ .-...+...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~------p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT------TTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC------CCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999997 45544311 3345566677776665553333221 111111111
Q ss_pred h---------cCCCeEEEe----------CCCCCHH--HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc--CCCC
Q 028388 95 E---------SGNDKFLID----------GFPRNEE--NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN--QGRE 149 (209)
Q Consensus 95 ~---------~~~~~~i~d----------g~~~~~~--~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~--~~~~ 149 (209)
. ..+..||+| |+++... +...+..+ ....||++|||++|++++.+|+.+|. ..+.
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~ 176 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRL 176 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccch
Confidence 1 147899999 7765443 22233222 56789999999999999999999981 1222
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
+.....+.+++...+.... . .....++++|++.+++++.++|.+.|....
T Consensus 177 e~~~~~~~~rv~~~y~~l~---~--~~~~~~~vIDa~~s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 177 DQEDLKFHEKVIEGYQEII---H--NESQRFKSVNADQPLENVVEDTYQTIIKYL 226 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHT---T--TCTTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH---H--hCCCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 2234445555544332211 1 112468899999999999999998886544
No 25
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.85 E-value=2.2e-20 Score=136.86 Aligned_cols=171 Identities=15% Similarity=0.248 Sum_probs=104.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-------ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH----
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---- 86 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 86 (209)
|.++++|+|+|++||||||+++.|++.++. .++.. ++ +.++..+..+++++..+...+.....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a 95 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFA 95 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 457899999999999999999999999843 33322 11 23556677777777665433333221
Q ss_pred ---H----HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc
Q 028388 87 ---K----LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN 145 (209)
Q Consensus 87 ---~----~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~ 145 (209)
. .+...+. .+..||+|+|..+ .++...+... ....||++|||++|++++.+|+.+|.
T Consensus 96 ~R~~~~~~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 96 GRREHLALVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 1 1222222 4789999976322 2333333321 46789999999999999999999881
Q ss_pred -CCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 146 -QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
..+.+.....+.++....+.. +... ....+++||++.+++++.++|.+.|.
T Consensus 174 ~~dr~E~~~~ef~~rv~~~Y~~---la~~--~~~~~~vIDa~~s~eeV~~~I~~~l~ 225 (227)
T 3v9p_A 174 MPDKFESESDAFFARTRAEYLR---RAQE--APHRFVIVDSSEPIAQIRKQLEGVLA 225 (227)
T ss_dssp CC---CCHHHHHHHHHHHHHHH---HHHH--CTTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred CccchhhhhHHHHHHHHHHHHH---HHHH--hcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 112222223444443332221 1221 23468999999999999999988764
No 26
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.84 E-value=2.2e-19 Score=130.00 Aligned_cols=160 Identities=17% Similarity=0.249 Sum_probs=106.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHHHHhc
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES 96 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~ 96 (209)
.+++|+|+|+|||||||+++.|++.+|+.+++.|++..... ......+..+..... ...+.+.+ .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence 46799999999999999999999999999999987642210 000111222222211 23333333 2
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
.+..+|+|+.+........+.. ....+..+|||++|++++.+|+..| .......+.+...+..+ .+. + .
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~----~~~---~-~ 153 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRE-SAPGGLAFVFLHGSESVLAERMHHR--TGHFMPSSLLQTQLETL----EDP---R-G 153 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHH-TSTTCCEEEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHC----CCC---T-T
T ss_pred cCCCEEEECCCCCHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHHHh--hccCCCHHHHHHHHHhc----CCC---C-C
Confidence 4778999988777777777776 4455679999999999999999998 32222333333332222 111 1 2
Q ss_pred cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 177 KGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 177 ~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
....++||++.++++++++|.+.|..
T Consensus 154 ~~~~~~Id~~~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 154 EVRTVAVDVAQPLAEIVREALAGLAR 179 (202)
T ss_dssp STTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 22467888889999999999988864
No 27
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.83 E-value=4.2e-19 Score=129.17 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCCH-HHH-------H
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS-EVT-------I 86 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-------~ 86 (209)
++++|+|+|++||||||+++.|++.++ +.++.... +.++..+..+++++..+. .... ... .
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999985 44443311 245566677777766543 2222 211 1
Q ss_pred HHHHHHHHh--cCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-CCCC
Q 028388 87 KLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QGRE 149 (209)
Q Consensus 87 ~~i~~~~~~--~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~-~~~~ 149 (209)
..+.+.+.. ..+..||+|.|..+ ..+...+... ....||++|||++|++++.+|+..|. ..+.
T Consensus 79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~ 158 (213)
T 4edh_A 79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRF 158 (213)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTT
T ss_pred HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcc
Confidence 112222221 14789999975322 2333333332 46789999999999999999999881 1122
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
+.....+.++....+.. +...+ ...+++||++.+++++.++|.+.|.....
T Consensus 159 E~~~~~~~~rv~~~y~~---l~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 159 EQEDRRFFEAVRQTYLQ---RAAQA--PERYQVLDAGLPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp TTSCHHHHHHHHHHHHH---HHHHC--TTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH---HHHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 22223444444332221 12212 34689999999999999999998876554
No 28
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=1.3e-19 Score=131.07 Aligned_cols=171 Identities=12% Similarity=0.142 Sum_probs=104.7
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (209)
++.+.++.+|+|+|+|||||||+++.|++.+|+.+++.|++..... +......+...- ..........++....
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~~---~~~~~~~e~~~l~~l~- 92 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTERG---EAGFRELERNMLHEVA- 92 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHHH---HHHHHHHHHHHHHHHT-
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhcC---hHHHHHHHHHHHHHHh-
Confidence 3455667899999999999999999999999999999998876642 222322222110 1001111122233222
Q ss_pred hcCCCeEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hc-cCCC-CCCcHHHHHHHHHHHHhhch
Q 028388 95 ESGNDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR-NQGR-EDDNVETIRKRFKVFLESSL 168 (209)
Q Consensus 95 ~~~~~~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~-~r-~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (209)
....+|++ |.+........+.. ++.+|||++|++++.+|+. .| .++. .....+.+.+++........
T Consensus 93 --~~~~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~ 165 (199)
T 3vaa_A 93 --EFENVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRA 165 (199)
T ss_dssp --TCSSEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred --hcCCcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHH
Confidence 24566777 34444444444443 5789999999999999998 44 1121 13345556666665555444
Q ss_pred hHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388 169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 169 ~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~ 203 (209)
+. |.. .. +++|++ .++++++++|.+.+...
T Consensus 166 ~~---y~~-ad-~~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 166 PF---YTQ-AQ-YIFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp HH---HTT-SS-EEEECCCCSSHHHHHHHHHHHHHH
T ss_pred HH---Hhh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 43 444 33 566665 49999999999887654
No 29
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.83 E-value=5e-19 Score=128.68 Aligned_cols=174 Identities=16% Similarity=0.276 Sum_probs=110.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---C-ceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHH-HH----
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-VT---- 85 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~---- 85 (209)
++++|+|+|++||||||+++.|++.+. + .++.. ++ +.++..+..+++++... ...... ..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY 75 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence 468999999999999999999999884 3 22221 11 34566777777776632 222221 11
Q ss_pred ---HH----HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 86 ---IK----LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 86 ---~~----~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+ .+..++. .+..||+|.|..+ ..+...+... ....||++|||++|++++.+|+.+|
T Consensus 76 A~R~~~~~~~i~paL~--~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R 153 (213)
T 4tmk_A 76 AARVQLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153 (213)
T ss_dssp HHHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 12 2223333 4899999975322 3333333332 5678999999999999999999998
Q ss_pred -cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388 145 -NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA 207 (209)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~ 207 (209)
...+.+.....++++....+.. + ......+++||++.+++++.++|.+.+......+
T Consensus 154 ~~~dr~E~~~~~f~~rv~~~y~~---l---a~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~~ 211 (213)
T 4tmk_A 154 GELDRIEQESFDFFNRTRARYLE---L---AAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKEL 211 (213)
T ss_dssp SSCCTTTTSCHHHHHHHHHHHHH---H---HHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCccchhhhHHHHHHHHHHHHHH---H---HHHCCcEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1112222223344443332221 1 1222578999999999999999999887765543
No 30
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.83 E-value=4.6e-19 Score=127.62 Aligned_cols=166 Identities=16% Similarity=0.266 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH----------HHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IKL 88 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 88 (209)
++|+|+|+.||||||+++.|++.| |..++.... +.++..+..++..+......+.... ...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999988 444443211 2344444455544443333222211 122
Q ss_pred HHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388 89 LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (209)
Q Consensus 89 i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~ 154 (209)
+...+. .+..||+|.|..+ ..+...+... ....||++|||++|++++.+|...+ .+.+. .
T Consensus 75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e~-~- 148 (197)
T 3hjn_A 75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEK-R- 148 (197)
T ss_dssp HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTCC-H-
T ss_pred HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Ccccc-H-
Confidence 333333 4889999976422 2222222221 5678999999999999999998766 44333 2
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.+.++....+. .+.. .....++++|++.+++++.++|.+.|++.+
T Consensus 149 ef~~rv~~~y~---~la~--~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 149 EFLERVREGYL---VLAR--EHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHHHHH---HHHH--HCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHH---HHHH--hCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 34444333222 1111 223468999999999999999999998765
No 31
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.83 E-value=6.8e-19 Score=126.52 Aligned_cols=163 Identities=20% Similarity=0.320 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----------HH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK 87 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 87 (209)
++|+|+|+|||||||+++.|++++ |+++++.+. +.....+..+.+.+..+...+.... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 899988742 1223344444554544433222111 11
Q ss_pred HHHHHHHhcCCCeEEEe----------CCCCCH--HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 88 LLQKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 88 ~i~~~~~~~~~~~~i~d----------g~~~~~--~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
.+...+. .+..+++| |++... .+...+..+ ....|+++|||++|++++.+|+.+| ++.+ .
T Consensus 75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~-~- 148 (195)
T 2pbr_A 75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE-N- 148 (195)
T ss_dssp THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC-C-
T ss_pred HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc-h-
Confidence 2222332 46788898 443322 222222211 2347899999999999999999876 4433 2
Q ss_pred HHHHHHHHH-HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 154 ETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
..+.+++.. |.+. ...+ ..++++|++.+++++.++|.+.+...
T Consensus 149 ~~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 149 KEFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEILRALSGV 192 (195)
T ss_dssp HHHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 334444432 3221 1111 45788999999999999999888654
No 32
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.82 E-value=1.6e-19 Score=129.76 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=76.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+++|++|+|+|+|||||||+++.|++.+++.+++.|.+..................+.. .....+...+...+. .
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~ 76 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--S 76 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--C
Confidence 45688999999999999999999999999999999776544322100000000000000 001111222333333 4
Q ss_pred CCeEEEeCCCCCHHHHHHH---HHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 98 NDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~---~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
+.++|+|+++........+ .. ....|+++|||++|++++.+|+..|
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 77 GQSLIMESNFRVDLDTERMQNLHT-IAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHHH-HSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 6889999987322122223 33 4456789999999999999999988
No 33
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.82 E-value=1.5e-18 Score=125.04 Aligned_cols=166 Identities=17% Similarity=0.295 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQK 91 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~ 91 (209)
++|+|+|+|||||||+++.|++.+ |+.++..+. +.+...+..+.+.+..+...+.... ...+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 988886532 2334455555555554333332221 112222
Q ss_pred HHHhc--CCCeEEEeCC----------CC--CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028388 92 AMEES--GNDKFLIDGF----------PR--NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (209)
Q Consensus 92 ~~~~~--~~~~~i~dg~----------~~--~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~ 155 (209)
+... .+..+++|.+ +. .......+... ....|+++|||++|++++.+|+..| ++.+.. .
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R--~~~~~~--~ 149 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEKR--E 149 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CCCCCH--H
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc--CcccHH--H
Confidence 2221 3678999954 22 22222222211 4567999999999999999999988 554443 4
Q ss_pred HHHHHHH-HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 156 IRKRFKV-FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
+.+++.. |.+ +... ....++++|++.+++++.++|.+.+....
T Consensus 150 ~~~~~~~~~~~----~~~~--~~~~~~~Id~~~~~e~~~~~i~~~l~~~l 193 (197)
T 2z0h_A 150 FLERVREGYLV----LARE--HPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHHHHH----HHHH--CTTTEEEEETTSCHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHH----HHHh--CCCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 4444332 322 1111 13457889999999999999999998754
No 34
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.81 E-value=1.5e-19 Score=133.22 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC---CCCCHH-HH-------HH-
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSE-VT-------IK- 87 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-------~~- 87 (209)
++.+|+|+|++||||||+++.|++.++...++...+.++ +.++..+..+++++..+ ...... .. ..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999985332221111222 34566777777776421 122221 11 11
Q ss_pred ---HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC
Q 028388 88 ---LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE 149 (209)
Q Consensus 88 ---~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~ 149 (209)
.+..++. .+..||+|.|..+ ..+...+... ....||++|||++|++++.+|+.+| ...+.
T Consensus 104 ~~~~I~paL~--~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~ 181 (236)
T 3lv8_A 104 VENVIKPALA--RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI 181 (236)
T ss_dssp HHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred HHHHHHHHHH--cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence 2222333 4889999965321 2333333321 4578999999999999999999988 11122
Q ss_pred CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388 150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
+.....+.+++...+.. + ......+++||++.+++++.++|.+.|.....
T Consensus 182 E~~~~~~~~rv~~~y~~---l---a~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~ 231 (236)
T 3lv8_A 182 EKMDISFFERARERYLE---L---ANSDDSVVMIDAAQSIEQVTADIRRALQDWLS 231 (236)
T ss_dssp TTSCHHHHHHHHHHHHH---H---HHHCTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHH---H---HHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 22223444444332221 1 22222389999999999999999988876543
No 35
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.81 E-value=9.4e-19 Score=124.33 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH-HhCCceecHhHHHHHHHHcCCc-----hHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAME 94 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~-~l~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (209)
|.+|+|+|+|||||||+++.|++ .+++.+++.|. ++..+..... +....... ........+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 57899999999999999999999 68999999854 5554333211 11111000 11223444555552
Q ss_pred h-cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388 95 E-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 95 ~-~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
. ..+..+|+|+++....+...+..+ ....+..+|||++|++++.+|+..| +....+.+.+.+++..|....
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~---- 147 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREYL---- 147 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHHHH----
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc--ccCCCCHHHHHHHHHHhhccC----
Confidence 2 357899999998887666555542 1122457999999999999999988 433445666666666554421
Q ss_pred HHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
. ...+.+|++.+ +++...|...+..
T Consensus 148 ---~--~~~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 148 ---G--LPVYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp ---T--CCCC---------------------
T ss_pred ---C--CCccccCCCCC-ceeeehhhhhhhc
Confidence 1 11234777653 7777777766654
No 36
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.81 E-value=1.9e-18 Score=121.87 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
++|+|+|+|||||||+++.|++++++.+++.|.+..... .. ....... ..+. .+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~----------------~~~~~~~-~~l~--~~~~v 58 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GN----------------EKLFEHF-NKLA--DEDNV 58 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CH----------------HHHHHHH-HHHT--TCCSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HH----------------HHHHHHH-HHHH--hCCCe
Confidence 479999999999999999999999999999987655431 00 0001111 1122 35667
Q ss_pred EEeCCC---------------CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388 102 LIDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (209)
Q Consensus 102 i~dg~~---------------~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
++|.+. ....+...+.. ....|+.+|||++|++++.+|+..| +++....+.+.+....|.+
T Consensus 59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~~- 134 (173)
T 3kb2_A 59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYRE- 134 (173)
T ss_dssp EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHH-
T ss_pred EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHHH-
Confidence 777432 12223333333 4457899999999999999999998 5555544333322222222
Q ss_pred chhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcch
Q 028388 167 SLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 167 ~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~ 204 (209)
....+. ...+++|++ .+++++.++|.+.++...
T Consensus 135 ---~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 135 ---VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp ---HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred ---HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 122222 357788887 599999999999887644
No 37
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.80 E-value=1.6e-18 Score=125.51 Aligned_cols=169 Identities=18% Similarity=0.262 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------- 85 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 85 (209)
|+++++|+|+|+|||||||+++.|++++ |+.+++.+... .....+..+.+.+..+........
T Consensus 1 m~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~ 75 (204)
T 2v54_A 1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEF 75 (204)
T ss_dssp CCCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999 57776642210 022234444555543332322211
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388 86 IKLLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (209)
Q Consensus 86 ~~~i~~~~~~~~~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~ 154 (209)
...+...+. .+..+|+|+|+.+. .+...+.. ....|+.+|||++|++++.+ +| +.......
T Consensus 76 ~~~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~---~R--~~d~~e~~ 147 (204)
T 2v54_A 76 ASFIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYES-GLPKPDLVIFLESGSKEINR---NV--GEEIYEDV 147 (204)
T ss_dssp HHHHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHT-TSBCCSEEEEECCCHHHHTT---CC--SSSTTCCS
T ss_pred HHHHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhc-CCCCCCEEEEEeCCHHHHHh---hc--CcccccHH
Confidence 011222232 46789999886432 22222222 33578999999999999887 34 21111112
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.+.+++...+.... . .....++++|++.+++++.++|.+.+....
T Consensus 148 ~~~~rl~~~y~~~~---~--~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l 192 (204)
T 2v54_A 148 TFQQKVLQEYKKMI---E--EGDIHWQIISSEFEEDVKKELIKNIVIEAI 192 (204)
T ss_dssp HHHHHHHHHHHHHH---T--TCSSCEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---H--hCCCcEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 44455443222110 0 112467899999999999999998886544
No 38
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.80 E-value=2.6e-19 Score=130.64 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=95.7
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCC----ceec-HhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH------
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------ 85 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~----~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 85 (209)
...++++|+|+|++||||||+++.|++.++. .++. . ++ +.++..+..+++++...........
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t----re--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a 90 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT----RE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIA 90 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE----ES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee----eC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3557899999999999999999999998765 2222 1 01 2344455555555543222222111
Q ss_pred --HHH----HHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc
Q 028388 86 --IKL----LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN 145 (209)
Q Consensus 86 --~~~----i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~ 145 (209)
.+. +...+. .+..||+|.|..+ ..+...+... . ..||++|||++|++++.+|+ +|
T Consensus 91 ~R~~~~~~~I~paL~--~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~r- 165 (223)
T 3ld9_A 91 MRREHFVKIIKPSLM--QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CK- 165 (223)
T ss_dssp HHHHHHHHTHHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC------------
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-cc-
Confidence 122 222333 4789999976421 2333333332 3 68999999999999999999 55
Q ss_pred CCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388 146 QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA 207 (209)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~ 207 (209)
.+.+.....+.+++...+.. +...+ ...+++||++.+++++ ++|.+.+....+.+
T Consensus 166 -dr~E~~~~e~~~rv~~~y~~---la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~lg~~ 220 (223)
T 3ld9_A 166 -NGYEFADMEFYYRVRDGFYD---IAKKN--PHRCHVITDKSETYDI-DDINFVHLEVIKVL 220 (223)
T ss_dssp -------CHHHHHHHHHHHHH---HHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHHHHHH
T ss_pred -CccccchHHHHHHHHHHHHH---HHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHHHhhh
Confidence 44332223444444433222 12212 2468999999999999 99999887766543
No 39
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.80 E-value=1.6e-19 Score=129.52 Aligned_cols=168 Identities=15% Similarity=0.250 Sum_probs=98.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH---HHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EVTIKLLQKA 92 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~ 92 (209)
+++|+|+|+|||||||+++.|+++++ +.+++.++++++......... ...+ + ..... ..+...+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~-~---~~~~~~~~~~~~~~~~~~ 77 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQ-M---RKMDPETQKRIQKMAGRK 77 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGG-G---SSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHH-H---hcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999998 999999999887653321100 0000 0 01111 1112122222
Q ss_pred HHh-cCCCeEEEeCCCCCHHHH--------HHHHHhcCCCCcEEEEEecCHHHHHH-HHhh--ccCCCCCCcHHHHHHHH
Q 028388 93 MEE-SGNDKFLIDGFPRNEENR--------AAFEAVTKIEPEFVLFFDCSEEEMER-RILN--RNQGREDDNVETIRKRF 160 (209)
Q Consensus 93 ~~~-~~~~~~i~dg~~~~~~~~--------~~~~~~~~~~~~~~i~L~~~~~~~~~-R~~~--r~~~~~~~~~~~~~~~~ 160 (209)
+.. ..+..+|+|+++...... ..+.. ..|+++|||++|++++.+ |+.. | +++....+.+..+.
T Consensus 78 i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~~~~ 152 (192)
T 1kht_A 78 IAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE---LNPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIEQHQ 152 (192)
T ss_dssp HHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH---HCCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHHHHH
T ss_pred HHhhccCCeEEEccceeccccccccccCcHHHHhc---cCCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHHHHH
Confidence 221 135679999865321100 12222 147889999999999996 8887 6 55555555444332
Q ss_pred HHHHhhchhHHHHHhhcCcEEEE-cCCCChHHHHHHHHHhc
Q 028388 161 KVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~ee~~~~i~~~i 200 (209)
... +........+.. ..++++ |.+.+++++++.|.+.|
T Consensus 153 ~~~-~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 153 FMN-RCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHH-HHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 222 111112222322 344555 44456999999998775
No 40
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.80 E-value=1.1e-19 Score=132.58 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=103.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHH----------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK---------- 87 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 87 (209)
+.++++|+|+|+|||||||+++.|+++++..+++.+ .+++. ..+...+..+..++..+..++......
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM 84 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 446889999999999999999999999987665542 22211 012333444444443333333222111
Q ss_pred -HHHHHHHhcCCCeEEEeCCCCCH---HH------HHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028388 88 -LLQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET 155 (209)
Q Consensus 88 -~i~~~~~~~~~~~~i~dg~~~~~---~~------~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~ 155 (209)
.+...+. .+..+|+|+++.+. .. ...+..+ ....|+.+|||++|++++.+|+..|. .+. +. ..
T Consensus 85 ~~i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~r~-~~-~~ 159 (212)
T 2wwf_A 85 NEIKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE-EIY-EK-VE 159 (212)
T ss_dssp HHHHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS-STT-CS-HH
T ss_pred HHHHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc-ccc-cH-HH
Confidence 1222222 36789999986431 00 1122111 22478999999999999999987641 122 22 34
Q ss_pred HHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
+.+++...+.... ....++++|++.+++++.++|.+.+...
T Consensus 160 ~~~~~~~~~~~~~-------~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 160 TQKKIYETYKHFA-------HEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHHHHGGGGT-------TCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHh-------ccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 5555533322211 1345788999999999999999988654
No 41
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.80 E-value=1.1e-18 Score=127.15 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCc--eec----HhHHHHHHHHcCC---chHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (209)
++++|+|+|+|||||||+++.|+++++.. ++. .++.+++.+..+. .........+..... ...+...+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~i~ 80 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDF--SDRYERYIL 80 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHH--HHHHHHTHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHH--HHHHHHHHH
Confidence 57899999999999999999999999873 443 2333443332210 000000000000000 000011122
Q ss_pred HHHHhcCCCeEEEeCCCCCHH-----------HHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hccC-CCC--------
Q 028388 91 KAMEESGNDKFLIDGFPRNEE-----------NRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NRNQ-GRE-------- 149 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~~~-----------~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~-~r~~-~~~-------- 149 (209)
..+. .+..+|+|+++.+.. +...+.. ....|+++|||++|++++.+|+. .|.. .+.
T Consensus 81 ~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~ 157 (213)
T 2plr_A 81 PMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYS-FAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFP 157 (213)
T ss_dssp HHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTT-TSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCT
T ss_pred HHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccccccccccc
Confidence 2222 468899999865421 1122222 33458999999999999999998 7711 110
Q ss_pred -CCcH---HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 150 -DDNV---ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 150 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
.+.. ..+.+++..++. .+.....++++|++.+++++.++|.+.+....
T Consensus 158 ~~d~~e~~~~~~~r~~~~~~-------~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~ 209 (213)
T 2plr_A 158 GLSPEEGFLKYQGLITEVYD-------KLVKDENFIVIDGTKTPKEIQIQIRKFVGELI 209 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-------HHTTTTTCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHH-------HHHhhCCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 0001 123333222221 11111257899999999999999998886543
No 42
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.80 E-value=8e-18 Score=120.75 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHH-cCCchHHHHHHHHHcCCCCCH--HHHHHH----H
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIKL----L 89 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~----i 89 (209)
++|+|+|+|||||||+++.|+++++ +.+++.|+++.+.+. .....+. ..+ ....+. ...... +
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998 888988888876642 2111110 000 111111 111222 2
Q ss_pred HHHHHhcCCCeEEEeCCCCCHHH--------HHHHHHhcCCCCcEEEEEecCHHHHHHH-Hhh--ccCCC-CCCcHHHH-
Q 028388 90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN--RNQGR-EDDNVETI- 156 (209)
Q Consensus 90 ~~~~~~~~~~~~i~dg~~~~~~~--------~~~~~~~~~~~~~~~i~L~~~~~~~~~R-~~~--r~~~~-~~~~~~~~- 156 (209)
...+....+..||+|+++....+ ...+.. ..|+.+|||++|++++.+| +.. | ++ +....+.+
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~~ 151 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE---INPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVIL 151 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH---HCCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHHH
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh---cCCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHHH
Confidence 22221135789999987432211 223333 2478999999999998866 666 6 54 33333322
Q ss_pred -HHHHHHHHhhchhHHHHHhhcCcEEEE-cCCCChHHHHHHHHHhc
Q 028388 157 -RKRFKVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~ee~~~~i~~~i 200 (209)
..++...+. .....+. ...++++ |++.++++++++|.+.|
T Consensus 152 ~~~~~~~~~~---~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 152 ETINFARYAA---TASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHH---HHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 222222222 1122221 3457888 88889999999998875
No 43
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.79 E-value=9.5e-19 Score=127.74 Aligned_cols=175 Identities=16% Similarity=0.237 Sum_probs=95.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH---------
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI--------- 86 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 86 (209)
|.|.+|++|+|+|+|||||||+++.|+++++...++.+. +++. ..+...+..+..++..+..++.....
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~ 81 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE 81 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999999998654433211 1000 00122333344444333233322111
Q ss_pred --HHHHHHHHhcCCCeEEEeCCCC------------CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388 87 --KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (209)
Q Consensus 87 --~~i~~~~~~~~~~~~i~dg~~~------------~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~ 152 (209)
..+...+. .+..+|+|++.. ...+...+.. ....|+++|||++|++++.+|+..|. .+. +.
T Consensus 82 ~~~~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~Rl~r~~-~~~-~~ 156 (215)
T 1nn5_A 82 QVPLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFGH-ERY-EN 156 (215)
T ss_dssp THHHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC------CTT-CS
T ss_pred HHHHHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccCc-ccc-ch
Confidence 12333333 467899996431 1122111121 23468999999999999999997441 121 22
Q ss_pred HHHHHHHHHH-HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 153 VETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
..+.+++.. |..... .....++++|++.+++++.++|.+.+....
T Consensus 157 -~~~~~~~~~~~~~~~~------~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l 202 (215)
T 1nn5_A 157 -GAFQERALRCFHQLMK------DTTLNWKMVDASKSIEAVHEDIRVLSEDAI 202 (215)
T ss_dssp -HHHHHHHHHHHHHHTT------CTTSCEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH------hCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 233333322 211110 112457889998899999999998886544
No 44
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.79 E-value=3.4e-18 Score=120.70 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
++|+|+|+|||||||+++.|++.+|+++++.|++.+.. . +......+... +..........++. .+. ...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~-~-g~~~~~~~~~~---~~~~~~~~~~~~~~-~l~---~~~~ 73 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT-S-GMTVADVVAAE---GWPGFRRRESEALQ-AVA---TPNR 73 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH-H-CSCHHHHHHHH---HHHHHHHHHHHHHH-HHC---CSSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH-h-CCCHHHHHHHc---CHHHHHHHHHHHHH-Hhh---cCCe
Confidence 57999999999999999999999999999998887765 2 22222211110 00000111112222 222 3345
Q ss_pred EEe-CC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh--hccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 102 LID-GF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 102 i~d-g~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
|++ |. +........+.. ++++|||++|++++.+|+. .|...++....+...+++..+.....+. +..
T Consensus 74 vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~ 145 (173)
T 1e6c_A 74 VVATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQD 145 (173)
T ss_dssp EEECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHH
T ss_pred EEECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHH---HHh
Confidence 554 42 222333333333 5799999999999999998 6611233333344455555444433322 333
Q ss_pred cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 177 KGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 177 ~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
. .++||++ .+++++.++|.+.+..
T Consensus 146 -~-~~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 146 -V-AHYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp -H-CSEEEETTSCHHHHHHHHHHHTTC
T ss_pred -C-cEEEECCCCCHHHHHHHHHHHhcc
Confidence 2 2567776 7999999999998864
No 45
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.79 E-value=7.4e-18 Score=120.27 Aligned_cols=168 Identities=12% Similarity=0.146 Sum_probs=99.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (209)
+++|+|+|+|||||||+++.|++.+|+.+++.|++..... + ......+... +..........++..... ....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~-g-~~~~~~~~~~---g~~~~~~~~~~~~~~~~~--~~~~ 77 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-G-ADIAWIFEME---GEAGFRRREREMIEALCK--LDNI 77 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH-T-SCHHHHHHHH---HHHHHHHHHHHHHHHHHH--SSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-C-CChhhHHHHh---CHHHHHHHHHHHHHHHHh--cCCc
Confidence 5689999999999999999999999999999988877642 2 2222221111 111111222333443332 2333
Q ss_pred EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHH--hhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI--LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 101 ~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
+|..| ..........+.. ...+|||++|++++.+|+ ..+ ..|+........+.+........+. |..
T Consensus 78 vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~l~~~~~~r~~~---y~~ 148 (185)
T 3trf_A 78 ILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEKLQQLNEIRKPL---YQA 148 (185)
T ss_dssp EEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHHHHHHHHHHHHH---HHH
T ss_pred EEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHHHHHHHHHHHHH---Hhh
Confidence 44443 3334444444444 247999999999999999 443 1344433333344444444433333 333
Q ss_pred cCcEEEEcCC-CChHHHHHHHHHhcCcchh
Q 028388 177 KGKVRKIDAA-KPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 177 ~~~~~~id~~-~~~ee~~~~i~~~i~~~~~ 205 (209)
... +++|++ .+++++++.|.+.+.....
T Consensus 149 ~ad-~~Idt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 149 MAD-LVYPTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp HCS-EEEECTTCCHHHHHHHHHHHSCC---
T ss_pred cCC-EEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 233 456654 4899999999999987553
No 46
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.78 E-value=2.3e-18 Score=125.24 Aligned_cols=177 Identities=12% Similarity=0.196 Sum_probs=109.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCC-CCCH-HHH----------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPS-EVT---------- 85 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---------- 85 (209)
|.++++|+|+|++||||||+++.|++.++..... +++. ..++..+..+++++.... .... ...
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~ 76 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEI 76 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999863211 1111 124556666776665433 2221 111
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCHH-----------HHHHHHHh--cCCCCcEEEEE-ecCHHHHHHHHhhccCCCCCC
Q 028388 86 IKLLQKAMEESGNDKFLIDGFPRNEE-----------NRAAFEAV--TKIEPEFVLFF-DCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 86 ~~~i~~~~~~~~~~~~i~dg~~~~~~-----------~~~~~~~~--~~~~~~~~i~L-~~~~~~~~~R~~~r~~~~~~~ 151 (209)
.+.+..++. .+..||+|.|..+-. ....+..+ ....||++||| ++|++++.+|+..+ +...+
T Consensus 77 ~~~I~paL~--~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~--~dr~E 152 (216)
T 3tmk_A 77 VDKIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG--DERYE 152 (216)
T ss_dssp HHHHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS--CCTTC
T ss_pred HHHHHHHHH--cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC--ccccc
Confidence 112333333 488999997643311 11222221 45689999999 99999999998754 22223
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEc-CCCChHHHHHHHHHhcCcchh
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKID-AAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id-~~~~~ee~~~~i~~~i~~~~~ 205 (209)
. ..+++++...+......... .....+++|| ++.+++++.++|.+.|.....
T Consensus 153 ~-~~f~~rvr~~Y~~la~~~~~-~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~ 205 (216)
T 3tmk_A 153 T-VKFQEKVKQTFMKLLDKEIR-KGDESITIVDVTNKGIQEVEALIWQIVEPVLS 205 (216)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHH-TTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHhccc-cCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 35555554433322111000 1345799999 889999999999988876554
No 47
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.77 E-value=3.7e-17 Score=118.11 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=100.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKA 92 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~ 92 (209)
|...++.+|+|+|++||||||+++.|+..+|..+++.+++..... .. ....+....+... ...+++.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~~-~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------IA-TMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------HH-HHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------HH-HHhcCCCCCCcccccHHHHHHHH
Confidence 444567899999999999999999999999999999877532110 00 0011111111111 1122222
Q ss_pred HHh--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 93 MEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 93 ~~~--~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
+.. ..+..+|+|...........+.. ...+..+|||++|++++.+|+..| +......+.+...+..+ .+
T Consensus 94 ~~~~~~~g~~viid~~~~~~~~~~~l~~--~~~~~~vv~l~~~~e~l~~Rl~~R--~~~~~~~~~l~~~~~~~----~~- 164 (200)
T 4eun_A 94 MDARADAGVSTIITCSALKRTYRDVLRE--GPPSVDFLHLDGPAEVIKGRMSKR--EGHFMPASLLQSQLATL----EA- 164 (200)
T ss_dssp HHHHHHTTCCEEEEECCCCHHHHHHHTT--SSSCCEEEEEECCHHHHHHHHTTC--SCCSSCGGGHHHHHHHC----CC-
T ss_pred HHHHHhcCCCEEEEchhhhHHHHHHHHH--hCCceEEEEEeCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHh----CC-
Confidence 211 13567888875555555444444 233567999999999999999988 33222233333222111 11
Q ss_pred HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388 171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
.+.. ...++||++.++++++++|.+.+.....
T Consensus 165 --~~~~-~~~~~Id~~~~~~e~~~~I~~~l~~~~~ 196 (200)
T 4eun_A 165 --LEPD-ESGIVLDLRQPPEQLIERALTWLDIAPA 196 (200)
T ss_dssp --CCTT-SCEEEEETTSCHHHHHHHHHHHHCCCGG
T ss_pred --CCCC-CCeEEEECCCCHHHHHHHHHHHHHhccC
Confidence 1221 2467888888999999999999986543
No 48
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.77 E-value=1.9e-18 Score=129.78 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=102.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH---hCCcee--cHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~---l~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
.++++|+|+|+|||||||+++.|++. +|+.++ +.|.+ +..+......+.. . ........+...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~---~-------~~~~~~~~i~~~l 70 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEE---F-------IKKSTYRLIDSAL 70 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHH---H-------HHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHH---H-------HHHHHHHHHHHHh
Confidence 45789999999999999999999998 688777 76543 3321110000000 0 0111123344444
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388 94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 94 ~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
. . ..+|+|+.+........+... ....++.+|||++|++++.+|+.+| ++. ...+.+......|. .+.
T Consensus 71 ~--~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R--~~~-~~~~~l~~~~~~~e---~~~- 140 (260)
T 3a4m_A 71 K--N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER--GEK-IPNEVIKKMYEKFD---EPG- 140 (260)
T ss_dssp T--T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT--TCS-SCHHHHHHHHHHCC---CTT-
T ss_pred h--C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC--CCC-CCHHHHHHHHHHhc---Ccc-
Confidence 3 3 889999977766665555442 3456789999999999999999988 543 23343433322221 111
Q ss_pred HHHhhcCcEEEEcCCC--ChHHHHHHHHHhcCcchh
Q 028388 172 QYYEAKGKVRKIDAAK--PVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 172 ~~~~~~~~~~~id~~~--~~ee~~~~i~~~i~~~~~ 205 (209)
..+.-....+.+|++. +++++++.|.+.+....+
T Consensus 141 ~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~ 176 (260)
T 3a4m_A 141 KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK 176 (260)
T ss_dssp SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence 1111123457888865 899999999988876443
No 49
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.77 E-value=6.5e-18 Score=120.48 Aligned_cols=167 Identities=16% Similarity=0.223 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
++|+|+|+|||||||+++.|++.+|+++++.|++.+... +......+. ..+...........+...+.. ...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--~~~v 75 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFA---TDGEQEFRRIEEDVVRAALAD--HDGV 75 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHH---HHCHHHHHHHHHHHHHHHHHH--CCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHHHHHhc--CCeE
Confidence 569999999999999999999999999999999877653 222111111 111111112222334433332 3344
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEE
Q 028388 102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181 (209)
Q Consensus 102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (209)
+.+|...-... .....+. .+.+|||++|++++.+|+..|. .++........+++..+.....+ .|..... +
T Consensus 76 i~~g~~~v~~~-~~~~~l~---~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~~~~~r~~---~~~~~~~-~ 146 (184)
T 2iyv_A 76 LSLGGGAVTSP-GVRAALA---GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKRAP---LYRRVAT-M 146 (184)
T ss_dssp EECCTTGGGSH-HHHHHHT---TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHHHH---HHHHHCS-E
T ss_pred EecCCcEEcCH-HHHHHHc---CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHH---HHhccCC-E
Confidence 44442111111 1111111 4579999999999999999871 12211111122233333222222 2333333 5
Q ss_pred EEcCC-CChHHHHHHHHHhcCcch
Q 028388 182 KIDAA-KPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 182 ~id~~-~~~ee~~~~i~~~i~~~~ 204 (209)
+||++ .++++++++|.+.+....
T Consensus 147 ~Idt~~~s~ee~~~~I~~~l~~~~ 170 (184)
T 2iyv_A 147 RVDTNRRNPGAVVRHILSRLQVPS 170 (184)
T ss_dssp EEECSSSCHHHHHHHHHTTSCCCC
T ss_pred EEECCCCCHHHHHHHHHHHHhhcC
Confidence 77776 799999999999986644
No 50
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.76 E-value=7.2e-17 Score=117.10 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCC-----CC---------------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP--------------- 81 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------- 81 (209)
++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+...+..... ..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5899999999999999999988 99999999998876432222211112221211110 00
Q ss_pred -------HHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388 82 -------SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (209)
Q Consensus 82 -------~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~ 154 (209)
.+.....+.+.+....+..+|+|+.. ..+.. +. ..++.+|||++|++++.+|+..| . ....+
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~-l~e~~--~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~~~~e 150 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPL-LIENK--LT----ALCDRILVVDVSPQTQLARSAQR--D--NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTT-TTTTT--CG----GGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEech-hhhcC--cH----hhCCEEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence 01111122222333335678889742 22111 11 23678999999999999999977 2 23455
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChH----HHHHHHHHhcCcc
Q 028388 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVA----EVFDAVKAVFTPK 203 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e----e~~~~i~~~i~~~ 203 (209)
.+.+++.. ..+..+.+.. .+ +++|++.+++ ++.++|.+.+...
T Consensus 151 ~~~~r~~~----q~~~~~~~~~-ad-~vIdn~~~~~~~~~~~~~~i~~~~~~~ 197 (206)
T 1jjv_A 151 QIQRIMNS----QVSQQERLKW-AD-DVINNDAELAQNLPHLQQKVLELHQFY 197 (206)
T ss_dssp HHHHHHHH----SCCHHHHHHH-CS-EEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----cCChHHHHHh-CC-EEEECCCCccccHHHHHHHHHHHHHHH
Confidence 56665543 1233333443 33 5677766999 9999998887543
No 51
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.76 E-value=2.5e-16 Score=111.30 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHcCCchHH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
..+.+|+|+|+|||||||+++.|+..+|..+++.|++.... ...+..... .....+ ......+...+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~ 77 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ 77 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence 34679999999999999999999999999999987763210 001111100 000000 01122222222
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (209)
Q Consensus 94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (209)
. .+..+|+|...........+.. ..++ .+|||++|++++.+|+..| +........+...+..+ .+.
T Consensus 78 ~--~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~----~~~-- 144 (175)
T 1knq_A 78 R--TNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETL----QEP-- 144 (175)
T ss_dssp H--HCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHC----CCC--
T ss_pred h--cCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhc--cCCCCchHHHHHHHHhh----hCc--
Confidence 2 2567888853333444444433 2234 7999999999999999988 32222233333222111 110
Q ss_pred HHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388 173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201 (209)
Q Consensus 173 ~~~~~~~~~~id~~~~~ee~~~~i~~~i~ 201 (209)
++.. ...+++|++.+++++.++|.+.+.
T Consensus 145 ~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 145 GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 0222 236788888899999999998774
No 52
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.76 E-value=6.5e-18 Score=118.68 Aligned_cols=158 Identities=16% Similarity=0.245 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 100 (209)
+.|+|+|+|||||||+++.|++.+++++++.|++..... +.... +.+.. +..........++. .+.. .+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g~~~~----~~~~~~~~~~~~~~~~~~l~-~l~~-~~~~ 72 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--GLSIP----QIFEKKGEAYFRKLEFEVLK-DLSE-KENV 72 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHH----HHHHHSCHHHHHHHHHHHHH-HHTT-SSSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--CCCHH----HHHHHhChHHHHHHHHHHHH-HHhc-cCCe
Confidence 479999999999999999999999999999998877653 22222 11111 11000111122222 2221 2344
Q ss_pred EEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhhchhHHHHHhh
Q 028388 101 FLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 101 ~i~dg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
||.+|. +........+. .++.+|||++|++++.+|+..|. .++... .+.+.+.+. + . ...+..
T Consensus 73 Vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~~~~---~-~---~~~~~~ 139 (168)
T 2pt5_A 73 VISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKNLFE---E-R---RKIYSK 139 (168)
T ss_dssp EEECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHHHHH---H-H---HHHHTT
T ss_pred EEECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHHHHH---H-H---HHHHHh
Confidence 444442 22233333332 26899999999999999998761 122211 222222221 1 1 122343
Q ss_pred cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 177 KGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 177 ~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..+++ |++.+++++.++|.+.+..
T Consensus 140 -~~~~i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 140 -ADIKV-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp -SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred -CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence 55666 7778999999999988864
No 53
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.75 E-value=9.5e-17 Score=121.79 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=103.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHH--------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV-------- 84 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-------- 84 (209)
+++|++|+|+|+|||||||+|+.|+ .+|+.+++.|++.+..+..+......+.+.+... ..+....
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 4568899999999999999999999 6999999999998776444333222222222110 0111100
Q ss_pred --------------HHHHHHHHHH---hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCC
Q 028388 85 --------------TIKLLQKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG 147 (209)
Q Consensus 85 --------------~~~~i~~~~~---~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~ 147 (209)
+...+.+.+. ......+|+||...... .+. ..++.+|||++|++++.+|+..| .
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~----~~~d~vI~l~a~~ev~~~Rl~~R--~ 221 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ----SMVHEVWTVVIPETEAVRRIVER--D 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG----GGCSEEEEEECCHHHHHHHHHHH--H
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH----HhCCEEEEEcCCHHHHHHHHHHc--C
Confidence 0111112221 11246899998642211 111 23689999999999999999987 2
Q ss_pred CCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
..+.+.+.+++... .+...++. ... ++||++.+++++.++|.+.+....
T Consensus 222 --g~s~e~~~~ri~~q----~~~~~~~~-~AD-~vIdn~~s~eel~~~I~~~l~~l~ 270 (281)
T 2f6r_A 222 --GLSEAAAQSRLQSQ----MSGQQLVE-QSN-VVLSTLWESHVTQSQVEKAWNLLQ 270 (281)
T ss_dssp --CCCHHHHHHHHHTS----CCHHHHHH-TCS-EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHc----CChHhhHh-hCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence 22445555554332 22223332 233 567777799999999998876543
No 54
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.75 E-value=4.6e-17 Score=119.18 Aligned_cols=168 Identities=18% Similarity=0.207 Sum_probs=99.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHH------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVTI------ 86 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------ 86 (209)
|++|++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+.+.+.. ...+....+.
T Consensus 1 M~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~ 79 (218)
T 1vht_A 1 MSLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFAN 79 (218)
T ss_dssp -CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999998 99999999988877543333222333322211 0112211111
Q ss_pred --------H----HH----HHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC
Q 028388 87 --------K----LL----QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED 150 (209)
Q Consensus 87 --------~----~i----~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~ 150 (209)
. .+ ...+....+..+++|+ +...... +. ..++.+|||++|++++.+|+..| . .
T Consensus 80 ~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~ 148 (218)
T 1vht_A 80 PEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LY----KKANRVLVVDVSPETQLKRTMQR--D--D 148 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GG----GGCSEEEEEECCHHHHHHHHHHH--H--T
T ss_pred HHHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--cc----ccCCEEEEEECCHHHHHHHHHHc--C--C
Confidence 1 11 1112221334556665 3222221 21 23789999999999999999987 2 2
Q ss_pred CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
...+.+.+++... .+...+... .. +++|++.+++++.++|.+.+...
T Consensus 149 ~~~~~~~~~~~~~----~~~~~~~~~-ad-~vId~~~~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 149 VTREHVEQILAAQ----ATREARLAV-AD-DVIDNNGAPDAIASDVARLHAHY 195 (218)
T ss_dssp CCHHHHHHHHHHS----CCHHHHHHH-CS-EEEECSSCTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc----CChHHHHHh-CC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 2344555544331 122222222 33 57777779999999998887654
No 55
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.75 E-value=5e-17 Score=117.17 Aligned_cols=168 Identities=14% Similarity=0.082 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------- 85 (209)
.-|.++|.+||||||+++.|++ +|+++++.|.+.++.+..+......+.+.++. ...+....+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 4699999999999999999988 99999999999988876665544455444432 122222222
Q ss_pred -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388 86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE 154 (209)
Q Consensus 86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~ 154 (209)
...+.+.+.......+|+|. |...+.. .+.. .+|.+|+++||+++..+|+.+| . ..+.+
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~~----~~D~vi~V~ap~e~r~~Rl~~R--d--g~s~e 158 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWKA----RCDRVLVVDCPVDTQIARVMQR--N--GFTRE 158 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHHH----HCSEEEEEECCHHHHHHHHHHH--H--CCCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Cccc----cCCeEEEEECCHHHHHHHHHhc--C--CCCHH
Confidence 22333333433445678885 4444411 2222 2789999999999999999988 2 34566
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcchhh
Q 028388 155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKDEK 206 (209)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~~~ 206 (209)
.+.+++.... +..+... ..+ ++|+++ .+++++.++|.+++......
T Consensus 159 ea~~ri~~Q~----~~eek~~-~AD-~VIdN~~gsle~l~~qV~~l~~~~~~~ 205 (210)
T 4i1u_A 159 QVEAIIARQA----TREARLA-AAD-DVIVNDAATPDALAVQVDALHQRYLAF 205 (210)
T ss_dssp HHHHHHHHSC----CHHHHHH-TCS-EEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----ChHHHHH-hCC-EEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666654321 2233333 333 566777 89999999999888765543
No 56
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.74 E-value=7.6e-17 Score=116.64 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHh----HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG----DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
++|+|+|+|||||||+++.|+++++..++... .+++..+........... .......++.......
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQ----------IYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHH----------HHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHH----------HHHHHHHHHHHHHhhc
Confidence 47999999999999999999999998776521 111211100000000000 0000111111101111
Q ss_pred CCeEEEeCCCCCHHH---------------HH---H-HHHh--c-------CCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028388 98 NDKFLIDGFPRNEEN---------------RA---A-FEAV--T-------KIEPEFVLFFDCSEEEMERRILNRNQGRE 149 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~---------------~~---~-~~~~--~-------~~~~~~~i~L~~~~~~~~~R~~~r~~~~~ 149 (209)
...+|+|+++.+-.- .. . +... . ...|+.+|||++|++++.+|+.+| +++
T Consensus 71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~ 148 (205)
T 2jaq_A 71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS 148 (205)
T ss_dssp --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence 234999988754111 01 1 1111 1 156899999999999999999988 543
Q ss_pred CCcH--HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 150 DDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.... ..+.+++..++.. ..+.+......+++|++.+++++.++|.+.+...
T Consensus 149 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 149 EELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201 (205)
T ss_dssp HHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 2211 1333444333332 2333432345788999889999999999887543
No 57
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.73 E-value=6.7e-16 Score=109.81 Aligned_cols=161 Identities=16% Similarity=0.125 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCcee-cH---hHHHHHHHHcCCchHHHHHHHHHcCCCCCH-HHHHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SA---GDLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAME 94 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 94 (209)
+|++|+|+|+|||||||+++.|++.+++.++ +. ++.+++.+..+... +.. .... ......+...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~-------~~~--~~~~~~~~~~~i~~~l~ 74 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGD-------PQE--HPMWIPLMLDALQYASR 74 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSC-------GGG--STTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccch-------hhh--hHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999888 43 12222221100000 000 0000 223444555444
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHH-h-cCCCCcEEEEEecCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHHhhchhHH
Q 028388 95 ESGNDKFLIDGFPRNEENRAAFEA-V-TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 95 ~~~~~~~i~dg~~~~~~~~~~~~~-~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
. .+..+|+|+..........+.. + ....+...|||++|++++.+|+..| + ++ ...+.+.. +.+...+.
T Consensus 75 ~-~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R--~~r~-~~~~~~~~----~~~~~~~~- 145 (183)
T 2vli_A 75 E-AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRD--GQPQ-VNVGTVED----RLNELRGE- 145 (183)
T ss_dssp H-CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHH----HHHHHTSG-
T ss_pred h-CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhc--cccc-hhHHHHHH----HHHhhccc-
Confidence 2 3677889976655433322211 1 1212235699999999999999988 3 22 22333322 22222222
Q ss_pred HHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcch
Q 028388 172 QYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 172 ~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~ 204 (209)
... . ++|++ .+++++.++|.+.+....
T Consensus 146 ----~~~-~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 146 ----QFQ-T-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp ----GGC-S-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred ----ccc-e-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 122 3 77876 799999999999987654
No 58
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.73 E-value=1.6e-17 Score=116.71 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDK 100 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (209)
.+|+|+|+|||||||+++.|++++|+++++.|++.+... +.... +.+. .+.....+....++..... .+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~~~~----~~~~~~g~~~~~~~~~~~l~~~~~--~~~~ 79 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GLSVR----EIFEELGEDNFRMFEKNLIDELKT--LKTP 79 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHH----HHHHHTCHHHHHHHHHHHHHHHHT--CSSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CCCHH----HHHHHhCHHHHHHHHHHHHHHHHh--cCCC
Confidence 579999999999999999999999999999999887653 22221 2121 1111111222233333322 2233
Q ss_pred -EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhhchhHHHHHh
Q 028388 101 -FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 101 -~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
++..| ++.. .. ...++.+|||++|++++.+|+..|. ..++... .+.+.+. .... ...|.
T Consensus 80 ~Vi~~g~g~~~~-~~--------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~----~~~r---~~~~~ 143 (168)
T 1zuh_A 80 HVISTGGGIVMH-EN--------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKEL----FEKR---QALYE 143 (168)
T ss_dssp CEEECCGGGGGC-GG--------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHH----HHHH---HHHHH
T ss_pred EEEECCCCEech-hH--------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHH----HHHH---HHHHH
Confidence 33323 2222 11 1236899999999999999998761 1223222 2223222 2211 12233
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHhc
Q 028388 176 AKGKVRKIDAAKPVAEVFDAVKAVF 200 (209)
Q Consensus 176 ~~~~~~~id~~~~~ee~~~~i~~~i 200 (209)
.... +++|++.++++++++|.+.|
T Consensus 144 ~~a~-~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 144 KNAS-FIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp HTCS-EEEEGGGCHHHHHHHHHHC-
T ss_pred HHCC-EEEECCCCHHHHHHHHHHHh
Confidence 3333 45666559999999998765
No 59
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.72 E-value=7.6e-17 Score=116.78 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT----------- 85 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----------- 85 (209)
++|+|+|++||||||+++.|++ +|+++++.|++++..+..+......+.+.+... .......+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 999999999988765332222222222222110 01111111
Q ss_pred -----------HHHHHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 86 -----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 86 -----------~~~i~~~~~~~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
...+...+....+ ..+|+|+....... +. ..++.+|||++|++++.+|+..| +. ..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~---~~----~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~ 148 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG---TY----KNYDKLIVVYAPYEVCKERAIKR--GM---SE 148 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT---CG----GGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC---ch----hhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence 1111222222233 68899984321111 11 12679999999999999999987 42 33
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
+.+.+++... .+... +..... +++|++.+++++.++|.+.+...
T Consensus 149 ~~~~~~~~~~----~~~~~-~~~~ad-~vId~~~~~~~~~~~i~~~l~~~ 192 (204)
T 2if2_A 149 EDFERRWKKQ----MPIEE-KVKYAD-YVIDNSGSIEETYKQVKKVYEEL 192 (204)
T ss_dssp HHHHHHHTTS----CCHHH-HGGGCS-EECCCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC----CChhH-HHhcCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 4455543332 12222 233333 57888889999999999887553
No 60
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.72 E-value=5.2e-17 Score=114.91 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF 101 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (209)
+.|+|+|+|||||||+++.|++.+++++++.|++.+... +......+.. .+..........++.. +. ....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~~---~g~~~~~~~~~~~~~~-l~--~~~~~ 76 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFEQ---KRENFFREQEQKMADF-FS--SCEKA 76 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHHH---HCHHHHHHHHHHHHHH-HT--TCCSE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--CCCHHHHHHH---cCHHHHHHHHHHHHHH-HH--ccCCE
Confidence 369999999999999999999999999999988877542 2222111110 1111111111222332 22 23455
Q ss_pred EEe-CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388 102 LID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEAKG 178 (209)
Q Consensus 102 i~d-g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (209)
|++ |...... .. +.. .+.+|||++|++++.+|+..|. ..++... .+.+.+ ..... ..+|....
T Consensus 77 vi~~g~~~~~~-~~-l~~-----~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~----~~~~r---~~~y~~~~ 142 (175)
T 1via_A 77 CIATGGGFVNV-SN-LEK-----AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKK----LYNER---LSKYEQKA 142 (175)
T ss_dssp EEECCTTGGGS-TT-GGG-----GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHH----HHHHH---HHHHHHHC
T ss_pred EEECCCCEehh-hH-Hhc-----CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHH----HHHHH---HHHHHhcC
Confidence 555 5322211 11 222 3589999999999999998762 2343332 333332 22211 22333323
Q ss_pred cEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388 179 KVRKIDAA-KPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 179 ~~~~id~~-~~~ee~~~~i~~~i~~~ 203 (209)
.+.+|++ .+++++++.|.+.+..-
T Consensus 143 -~~~Idt~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 143 -NFILNIENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp -SEEEECTTCCHHHHHHHHHHHHC--
T ss_pred -CEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3677776 79999999999988653
No 61
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.72 E-value=3.2e-16 Score=115.23 Aligned_cols=171 Identities=18% Similarity=0.244 Sum_probs=99.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCchH--HHHHHHHHc-----------------
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKE----------------- 76 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~----------------- 76 (209)
.+++|+|+|++||||||+++.|++.+|+++++.|++++.... .+.... .........
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 457899999999999999999999999999999999986542 232221 111111110
Q ss_pred CCCCCH-----------------HHHHHHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388 77 GKIVPS-----------------EVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138 (209)
Q Consensus 77 ~~~~~~-----------------~~~~~~i~~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~ 138 (209)
+..+++ +.+...+...... ..+.++++||..... . ....++++|||+++++++.
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-------~-~~~~~d~~i~l~~~~e~~~ 155 (227)
T 1cke_A 84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-------V-VFPDAPVKIFLDASSEERA 155 (227)
T ss_dssp TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-------C-CCTTCSEEEEEECCHHHHH
T ss_pred CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-------e-EecCCCEEEEEeCCHHHHH
Confidence 111101 1122222222221 236789999863211 1 2335789999999999999
Q ss_pred HHHhhc--cCCCCCCcHHHHHHHHH-----HHHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388 139 RRILNR--NQGREDDNVETIRKRFK-----VFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 139 ~R~~~r--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~ 203 (209)
+|+..+ .+++.. ..+...+.+. .+.....++ ......+++|++ .++++++++|.+.+...
T Consensus 156 ~R~~~~l~~rg~~~-~~~~~~~~i~~R~~~~~~~~~~pl----~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 156 HRRMLQLQVKGFSV-NFERLLAEIKERDDRDRNRAVAPL----VPAADALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp HHHHHHHHHHTCCC-CHHHHHHHHC-------------C----CCCTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccC-CHHHHHHHHHHHHHhhhhhcccCc----cCCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 995432 124421 2333333222 121111121 112234688887 79999999999888653
No 62
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.71 E-value=1.1e-15 Score=110.94 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=97.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCch--HHHHHHHHH-----------------cCCC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMIK-----------------EGKI 79 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~~~-----------------~~~~ 79 (209)
+|+|+|++||||||+++.|++.+|+++++.|++.+.... .+... ...+..... .+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999999999999999998876532 12110 111111111 1111
Q ss_pred CC----H-------------HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028388 80 VP----S-------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142 (209)
Q Consensus 80 ~~----~-------------~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~ 142 (209)
++ . +.+...+........ .++|+||.... . . ....++++|||++|++++.+|+.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~--~-----~-~~~~~d~~i~l~a~~e~~~~R~~ 154 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG--T-----A-VFPEAAHKFYLTASPEVRAWRRA 154 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee--E-----E-EecCCcEEEEEECCHHHHHHHHH
Confidence 10 0 112222222222233 68899986432 0 1 22347899999999999999998
Q ss_pred hccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCC-ChHHHHHHHHHhcC
Q 028388 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFT 201 (209)
Q Consensus 143 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~ee~~~~i~~~i~ 201 (209)
.| .. ...+.+.+.+........ ..+......+++|++. +++++.++|.+.+.
T Consensus 155 ~r--~~--~~~~~~~~~~~~R~~~~~---~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 155 RE--RP--QAYEEVLRDLLRRDERDK---AQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HT--SS--SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred hh--cc--cCHHHHHHHHHHHHHHHh---hcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 87 32 333444444432111110 0002223447788875 99999999988764
No 63
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.71 E-value=9.6e-18 Score=125.47 Aligned_cols=175 Identities=19% Similarity=0.269 Sum_probs=100.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCc----------eecHhHHHHHHHHcCCchHHHHHHHHH-----cCCCC
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIK-----EGKIV 80 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 80 (209)
+...+|++|+|+|+|||||||+|+.|++.+|++ +++.|++++.. ..+........ .....
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~-----~~~~~~~~~~g~~~f~~~~~~ 91 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL-----TSEQKAKALKGQFNFDHPDAF 91 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC-----CHHHHHHHHTTCSCTTSGGGB
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc-----ChhhhhhhccCCCCCCCcchh
Confidence 445578899999999999999999999999988 78998887521 00100011111 11122
Q ss_pred CHHHHHHHHHHHHHh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388 81 PSEVTIKLLQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138 (209)
Q Consensus 81 ~~~~~~~~i~~~~~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~ 138 (209)
..+.+...+...... .....+|+||.+..... .+.. .++.+|||++|++++.
T Consensus 92 d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~----~~d~vi~l~~~~e~~~ 165 (252)
T 1uj2_A 92 DNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTRL 165 (252)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHHH
T ss_pred hHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH----hcCeeEEEeCCHHHHH
Confidence 223334445444310 13468999996543221 1222 1578999999999999
Q ss_pred HHHhhcc-CCCCCCcHHHHHHHHHHHHhhchhHHH----HHhhcCcEEE---EcCCCChHHHHHHHHHhcCcchh
Q 028388 139 RRILNRN-QGREDDNVETIRKRFKVFLESSLPVVQ----YYEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 139 ~R~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---id~~~~~ee~~~~i~~~i~~~~~ 205 (209)
+|+..|. ..+ ....+.+.+++... ..+.+. .+.....+++ +|++.+++++.++|.+.+.....
T Consensus 166 ~R~~~R~~~~r-g~~~e~i~~~~~~~---~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~~ 236 (252)
T 1uj2_A 166 SRRVLRDISER-GRDLEQILSQYITF---VKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPS 236 (252)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHT---HHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhhh-CCCHHHHHHHHHHh---ccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccchh
Confidence 9998871 111 12445555443321 111111 1222334433 37777999999999998866543
No 64
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.70 E-value=8.5e-17 Score=114.30 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=72.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
+.+.++.+|+|+|+|||||||+++.|++.+++.+++.|++++.. ......+... .......+.+...+...+..
T Consensus 6 ~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 79 (180)
T 3iij_A 6 PEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE 79 (180)
T ss_dssp CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH
T ss_pred cccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc
Confidence 34456778999999999999999999999999999999987765 1111110000 00112233344455555543
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.++|+|......- ....++.+|||++|++++.+|+..|
T Consensus 80 ---g~~vv~~~~~~~~--------~~~~~~~vi~L~~~~e~l~~R~~~r 117 (180)
T 3iij_A 80 ---GGVIVDYHGCDFF--------PERWFHIVFVLRTDTNVLYERLETR 117 (180)
T ss_dssp ---CCEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred ---CCEEEEechhhhc--------chhcCCEEEEEECCHHHHHHHHHHc
Confidence 3456675431110 0012679999999999999999988
No 65
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.69 E-value=4.6e-16 Score=110.92 Aligned_cols=114 Identities=20% Similarity=0.350 Sum_probs=73.7
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHH-hCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC---CHHHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQ 90 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~-l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~ 90 (209)
+|.+.++++|+|+|+|||||||+++.|++. +|+++++.|++.++. ......+.. +.. ... ..+.....+.
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~~~l~ 77 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLLDFME 77 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHHHHHH
Confidence 455667889999999999999999999999 799999999988764 111122211 111 112 2223344454
Q ss_pred HHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
..+.. ..++++|..... .+.. ..++.+|||++|++++.+|+..|
T Consensus 78 ~~~~~--~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R 121 (184)
T 1y63_A 78 PIMVS--RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKR 121 (184)
T ss_dssp HHHTS--SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHT
T ss_pred HHHhc--cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhC
Confidence 44422 346778864321 1111 12678999999999999999988
No 66
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.69 E-value=8e-17 Score=113.63 Aligned_cols=161 Identities=14% Similarity=0.234 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (209)
+.+|+|+|+|||||||+++.|+..+++.+++.|++.+... +......+... . ..........++..... ...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~-g--~~~~~~~~~~~l~~l~~---~~~ 75 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLE-G--EEGFRDREEKVINELTE---KQG 75 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHH-H--HHHHHHHHHHHHHHHHT---SSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHH-h--HHHHHHHHHHHHHHHHh---CCC
Confidence 5689999999999999999999999999999988776542 22222211110 0 00000011122332222 234
Q ss_pred EEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCC--CCCCc-HHHHHHHHHHHHhhchhHHHH
Q 028388 101 FLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQG--REDDN-VETIRKRFKVFLESSLPVVQY 173 (209)
Q Consensus 101 ~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (209)
+++. +.+........+.. +++++||+++++++.+|+..| .+. ...+. .+.+... .....+ .
T Consensus 76 ~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~----~~~r~~---~ 143 (173)
T 1kag_A 76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEAL----ANERNP---L 143 (173)
T ss_dssp EEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHH----HHHHHH---H
T ss_pred eEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH----HHHHHH---H
Confidence 5553 23223333333333 467999999999999999887 111 11122 3333332 221112 2
Q ss_pred HhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 174 YEAKGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 174 ~~~~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
|.... .+++|++ .++++++++|.+.+..
T Consensus 144 ~~~~a-~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 144 YEEIA-DVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp HHHHC-SEEC-----CHHHHHHHHHHHHC-
T ss_pred HHhhC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence 33333 3567775 7999999999988754
No 67
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.69 E-value=1.1e-15 Score=117.04 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGN 98 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 98 (209)
|++|+|+|+|||||||+++.|++++ ++.+++.| .++..+..... +.. ..+...............+...+.. ..+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 4789999999999999999999985 99999997 55555433111 000 0000000000112223344444421 347
Q ss_pred CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 028388 99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~ 165 (209)
..+|+|+++....+...+..+ ....+..+|||++|++++.+|+..| +....+.+.+.+++..|..
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~e~i~~~~~~~~~ 145 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMRE 145 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHHhc
Confidence 899999998887666655542 2223457999999999999999998 4334566777777666654
No 68
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.68 E-value=1.4e-16 Score=115.62 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcC---CCCCHHHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSEVTIKLLQKAME 94 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~ 94 (209)
.++.+|+|+|+|||||||+++.|++.+ ++.+++.|+++... .... ... ..+... ..+....+...+...+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPE-SEIE-TDK---NGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCG-GGSC-BCT---TSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCH-hHhh-ccc---cCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 456799999999999999999999988 89999998876422 1000 000 000000 00112222333333322
Q ss_pred h-------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHH-
Q 028388 95 E-------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKR- 159 (209)
Q Consensus 95 ~-------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~-~~~~~~~- 159 (209)
. .....+|+||+..... .. ....++.++|++++++++.+|+..| +...+. ...+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~----~~~~~d~~i~l~~~~~~~~~R~~~R--~~~~e~~~~~~~~~~ 165 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGFLLFNY--KP----LDTIWNRSYFLTIPYEECKRRRSTR--VYQPPDSPGYFDGHV 165 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECTTCTTC--GG----GTTTCSEEEEEECCHHHHHHHHHHS--CCSSCCCTTHHHHTH
T ss_pred CCCCCCcCCCeeecCCCCEEEEeehHHcCc--HH----HHHhcCeeEEEECCHHHHHHHHHHc--CCCccchHHHHHHHH
Confidence 1 1246899999653211 11 1235789999999999999999877 432221 2222221
Q ss_pred HHHHHhhchhHHHHHhhc-CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 160 FKVFLESSLPVVQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...|. ...+.+... ..++.+|++.+++++.++|.+.+..
T Consensus 166 ~~~~~----~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 166 WPMYL----KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHHHH----HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred hHHHH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 11121 122333433 4677899999999999999998865
No 69
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.68 E-value=3.2e-15 Score=107.88 Aligned_cols=168 Identities=13% Similarity=0.148 Sum_probs=94.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchH-HHHHHHHHcCC-CC------------CHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGK-IV------------PSEVTI 86 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~------------~~~~~~ 86 (209)
.++|.|.|++||||||+++.|+++||+++++ +++++..... .... ..+...-.... +. ..+.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 4689999999999999999999999999999 7877653211 1111 11111000000 00 011111
Q ss_pred HHHHHHHHh-c--CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388 87 KLLQKAMEE-S--GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 87 ~~i~~~~~~-~--~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (209)
......+.. . ...++|++|... ..+. ......+.|||++|++++.+|+.++. + .+.+...+.+...
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g-----~~vl--~~~~~~~~V~L~A~~e~r~~R~~~~~-~---~~~~~~~~~i~~~ 152 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCA-----EEIL--SDNPNMISAFILGDKDTKTKRVMERE-G---VDEKTALNMMKKM 152 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTH-----HHHT--TTCTTEEEEEEEECHHHHHHHHHHHH-T---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCc-----chhc--CCCCCeEEEEEECCHHHHHHHHHHHh-C---CCHHHHHHHHHHH
Confidence 222222221 1 246788887531 1111 22223589999999999999998761 1 2334444444443
Q ss_pred HhhchhHHHHH-------hhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 164 LESSLPVVQYY-------EAKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 164 ~~~~~~~~~~~-------~~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
.+...+.+..+ .....+ ++|+ ..+++++++.|...++.
T Consensus 153 d~~R~~~y~~~~~~~~~~~~~~dl-~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 153 DKMRKVYHNFYCESKWGDSRTYDI-CIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHHHHHCSSCTTBGGGCSE-EEEESSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcccCCE-EEECCCCCHHHHHHHHHHHHHH
Confidence 33333333333 111344 5555 67999999999988764
No 70
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.67 E-value=5e-16 Score=115.49 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK 100 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (209)
+.+|+|+|++||||||+++.|++.+|+.+++.|.+++... .+......+.. .+.....+.....+...... ....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~i~~i~~~---~ge~~fr~~e~~~l~~l~~~-~~~~ 122 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTSVAEIFEH---FGESVFREKETEALKKLSLM-YHQV 122 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSCHHHHHHH---HCHHHHHHHHHHHHHHHHHH-CSSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCccHHHHHHH---hCcHHHHHHHHHHHHHHHhh-cCCc
Confidence 6789999999999999999999999999999998887763 22223222221 12222222223344444332 1345
Q ss_pred EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC-------cHHHHHHHHHHHHhhchhH
Q 028388 101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDD-------NVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 101 ~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 170 (209)
+|.+| .+........+. .+++|||++|++++.+|+.++ ...|+.. ..+...+++....+...++
T Consensus 123 Via~GgG~v~~~~~~~~l~------~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l 196 (250)
T 3nwj_A 123 VVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA 196 (250)
T ss_dssp EEECCGGGGGSHHHHHHHT------TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCeecCHHHHHHHh------CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence 55554 433333333321 268999999999999999863 1122211 1122344555555544444
Q ss_pred HHHHhhcCcEEE-----------EcC-CCChHHHHHHHHHhcCcc
Q 028388 171 VQYYEAKGKVRK-----------IDA-AKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 171 ~~~~~~~~~~~~-----------id~-~~~~ee~~~~i~~~i~~~ 203 (209)
|.... +++ +|+ +.+++++++.|.+.+...
T Consensus 197 ---Y~~ad-~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 197 ---YTKAS-ARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp ---HTTSS-EEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred ---HhhCC-EEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 44433 433 254 579999999999887654
No 71
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.67 E-value=2.6e-15 Score=108.48 Aligned_cols=165 Identities=21% Similarity=0.231 Sum_probs=97.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc---CCCCCHHHH---------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE---GKIVPSEVT--------- 85 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------- 85 (209)
..++++|+|+|++||||||+++.|++. |+.+++.|++++... .+.. ..+...+.. ...+....+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 456789999999999999999999998 999999999887764 2111 111111100 011111111
Q ss_pred -----HHHHH-----HHHHh--cC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388 86 -----IKLLQ-----KAMEE--SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN 152 (209)
Q Consensus 86 -----~~~i~-----~~~~~--~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~ 152 (209)
..... ..+.. .. +..+|+|+. ..... .+. ..++.+|||++|++++.+|+..| . ...
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-~l~~~--~~~----~~~d~~i~l~~~~e~~~~R~~~R--~--~~~ 149 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIP-LLFEK--GWE----GRLHGTLLVAAPLEERVRRVMAR--S--GLS 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT-TTTTT--TCG----GGSSEEEEECCCHHHHHHHHHTT--T--CCT
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEec-ceecc--Cch----hhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence 10111 11111 12 578889873 21111 111 23689999999999999999977 2 222
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
.+.+..++... .+...+... .. +++|++.+++++.++|.+.+...
T Consensus 150 ~~~~~~~i~~~----~~~~~~~~~-ad-~vId~~~~~~~~~~~i~~~~~~~ 194 (203)
T 1uf9_A 150 REEVLARERAQ----MPEEEKRKR-AT-WVLENTGSLEDLERALKAVLAEL 194 (203)
T ss_dssp THHHHHHHTTS----CCHHHHHHH-CS-EEECCSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHC----CChhHHHHh-CC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 33444443321 122222232 33 47888779999999999887654
No 72
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.66 E-value=5.3e-15 Score=108.51 Aligned_cols=176 Identities=18% Similarity=0.239 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCc--hHHHHHHHHHcCC-------------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSE--NGTMIQNMIKEGK------------- 78 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~------------- 78 (209)
+.+|++|+|.|+|||||||+++.|++.+|+.+++.|.+++... ..+-. ....+.+......
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF 85 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence 3467899999999999999999999999999999999988753 22221 1122222222100
Q ss_pred ----CCC-----------------HHHHHHHHHHHHHh-cCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHH
Q 028388 79 ----IVP-----------------SEVTIKLLQKAMEE-SGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (209)
Q Consensus 79 ----~~~-----------------~~~~~~~i~~~~~~-~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~ 135 (209)
.+. ...+...+...-.. ... .++|+||-..... .....++.|||++|++
T Consensus 86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~--------V~pda~lkifl~A~~e 157 (233)
T 3r20_A 86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV--------VLPDADVKIFLTASAE 157 (233)
T ss_dssp ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC--------CCTTCSEEEEEECCHH
T ss_pred ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE--------EcCCCCEEEEEECCHH
Confidence 000 01111222111111 124 6788887311000 1233578999999999
Q ss_pred HHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh-----hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCcchh
Q 028388 136 EMERRILNR-NQGREDDNVETIRKRFKVFLE-----SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPKDE 205 (209)
Q Consensus 136 ~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~~~~ 205 (209)
++.+|..++ ...+.....+...+.+..... .+.|+ ......+++|+ ..+++++++.|..++.....
T Consensus 158 ~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl----~~~~dal~IDTs~l~iee~v~~I~~~i~~~~~ 230 (233)
T 3r20_A 158 ERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPL----RAADDALVVDTSDMDQAQVIAHLLDLVTAQAG 230 (233)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCC----SCCTTSEEEECTTSCHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccccc----ccccCcEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 999998764 111223344555444433222 11111 11223256665 67999999999999987653
No 73
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.65 E-value=3.2e-15 Score=108.28 Aligned_cols=165 Identities=15% Similarity=0.150 Sum_probs=95.5
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----------------------ceecHhHHHHHHHHcCCchHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----------------------THLSAGDLLRAEIKSGSENGTMIQNM 73 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~ 73 (209)
-|.++++|+|+|+|||||||+++.|++.++. .+++.+. +...+..+.... +
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~-~~~~~~~~~~~~-----~ 81 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDD-FERKLKEGQFLE-----F 81 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHH-HHHHHHTTCEEE-----E
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHH-HHHHHHcCCCEE-----e
Confidence 4667889999999999999999999998842 1223322 222212111000 0
Q ss_pred H-HcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCC-CcEEEEEe-cCHHHHHHHHhhccCCCCC
Q 028388 74 I-KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-PEFVLFFD-CSEEEMERRILNRNQGRED 150 (209)
Q Consensus 74 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~-~~~~i~L~-~~~~~~~~R~~~r~~~~~~ 150 (209)
. ..+..+. .....+...+. .+..+|+|..+. ....+.. .... ...+|||+ +|++++.+|+..| ++
T Consensus 82 ~~~~~~~~~--~~~~~i~~~l~--~g~~vi~d~~~~---~~~~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R--~~-- 149 (204)
T 2qor_A 82 DKYANNFYG--TLKSEYDLAVG--EGKICLFEMNIN---GVKQLKE-SKHIQDGIYIFVKPPSIDILLGRLKNR--NT-- 149 (204)
T ss_dssp EEETTEEEE--EEHHHHHHHHH--TTCEEEEECCHH---HHHHHHH-CSSCSCCEEEEEECSCHHHHHHHHHTC--TT--
T ss_pred HHhCCCeec--CCHHHHHHHHH--cCCeEEEEECHH---HHHHHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHc--CC--
Confidence 0 0000000 00223444444 578999997542 2233333 2221 23789998 9999999999987 43
Q ss_pred CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388 151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD 204 (209)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~ 204 (209)
+..+.+.+++...+....+. +......+++| + ++++++++|.+.|....
T Consensus 150 ~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 150 EKPEEINKRMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLLGSY 198 (204)
T ss_dssp SCHHHHHHHHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHHHHh
Confidence 35567777766554322110 33344455444 4 89999999998886543
No 74
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.65 E-value=3.1e-16 Score=117.94 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=51.8
Q ss_pred CCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhh------chhHHHHHhhcCcEEEEcCCCChHHHH
Q 028388 122 IEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLES------SLPVVQYYEAKGKVRKIDAAKPVAEVF 193 (209)
Q Consensus 122 ~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~id~~~~~ee~~ 193 (209)
..|+++|||++|++++.+|+.+| +++.+ ....+.+++...++. ..+.+..+.. ..+++||++.++++++
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~ 249 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY 249 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence 47999999999999999999988 54321 122333333322221 1111222222 4588999999999999
Q ss_pred HHHHHhcCcc
Q 028388 194 DAVKAVFTPK 203 (209)
Q Consensus 194 ~~i~~~i~~~ 203 (209)
+.|.+.|...
T Consensus 250 ~~I~~~l~~~ 259 (263)
T 1p5z_B 250 ESLVEKVKEF 259 (263)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888653
No 75
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.65 E-value=2.6e-14 Score=104.43 Aligned_cols=170 Identities=16% Similarity=0.229 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----------C-----------
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----------G----------- 77 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----------- 77 (209)
++++|.|.|++||||||+++.|++++|+++++ ++++........-....+...-.. +
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 35799999999999999999999999999999 577666544311000111100000 0
Q ss_pred --CCCCHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHH---HhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388 78 --KIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 151 (209)
Q Consensus 78 --~~~~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~---~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~ 151 (209)
....++.+.....+.+... ...++|++|... ..+. . . ....+.|||++|++++.+|+.++. ++
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grgg-----g~vl~~~~-~-~~~~~~VfL~A~~e~r~~Ri~~~~-~~--- 160 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAA-----GYVLDQDE-D-IERLIRIFVYTDKVKKVQRVMEVD-CI--- 160 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTH-----HHHHHHCT-T-CCEEEEEEEECCHHHHHHHHHHHH-TC---
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCc-----chhccccc-C-CCCeEEEEEECCHHHHHHHHHHhc-CC---
Confidence 0011122222222222221 135688887531 1222 2 1 122579999999999999998761 22
Q ss_pred cHHHHHHHHHHHHhhchhHHHHHh-------hcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388 152 NVETIRKRFKVFLESSLPVVQYYE-------AKGKVRKIDA-AKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~id~-~~~~ee~~~~i~~~i~~ 202 (209)
+.+...+.+....+...+.+..|- ....+ +||+ ..+++++++.|...++.
T Consensus 161 ~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl-~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 161 DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDL-PINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSE-EEECTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeE-EEECCCCCHHHHHHHHHHHHHH
Confidence 234555555554444444444331 12344 5565 56999999999988754
No 76
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.65 E-value=1.4e-15 Score=113.61 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=97.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCch--HHHHHHHHHcCC--------------
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKEGK-------------- 78 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~-------------- 78 (209)
.++.+|.|.|++||||||+++.|+++||+.+++.|.+++... ..+... ..........-.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 456799999999999999999999999999999999986643 222111 001111111000
Q ss_pred ---CC-----------------CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388 79 ---IV-----------------PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (209)
Q Consensus 79 ---~~-----------------~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~ 137 (209)
.+ ..+.+...+....... .+.++|+||...... .....++.|||++|++++
T Consensus 105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~--------v~~~~~~~ifl~A~~e~r 176 (252)
T 4e22_A 105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI--------VFPDAPVKIFLDASSQER 176 (252)
T ss_dssp TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC--------CSTTCSEEEEEECCHHHH
T ss_pred CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee--------ecCCCCEEEEEECCHHHH
Confidence 00 0111223333332222 366788887321100 122367899999999999
Q ss_pred HHHHhhc-cCCCCCCcHHHHHHHHHHHH--hhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388 138 ERRILNR-NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 138 ~~R~~~r-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~ 203 (209)
.+|+.++ ...+.....+...+.+.... +..+. ...+......++||++ .++++++++|.+++...
T Consensus 177 ~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~-~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 177 AHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRS-VAPLVPAADALVLDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcc-ccchhccCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence 9998753 11122334444444432211 11111 0111222234667764 59999999999888654
No 77
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.63 E-value=9.5e-15 Score=116.57 Aligned_cols=103 Identities=22% Similarity=0.265 Sum_probs=78.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
+.+++|.+|+|+|+|||||||+++.|++.+++.+++.|++- . .......+...+.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~- 307 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR- 307 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH-
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh-
Confidence 34567899999999999999999999999999999997740 0 1112334444444
Q ss_pred cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.+..+|+|+.+.....+..+..+ ....+..+|||+++.+++.+|+..|
T Consensus 308 -~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 308 -QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp -TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred -cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 47889999988887766665543 2233457999999999999999999
No 78
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.62 E-value=3.2e-14 Score=100.65 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCcee--cHhHHHHHHHHcCCchHHHHHH-HH-HcCCCC-CH---HHH---HHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENGTMIQN-MI-KEGKIV-PS---EVT---IKLL 89 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i--~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~---~~~---~~~i 89 (209)
|++|+|+|+|||||||+++.|+++++..++ +.|++.... ... ....... .+ ..+... .. ... ...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM-PLK--MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS-CGG--GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc-chh--hccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 578999999999999999999999987655 466554321 210 0000000 00 000000 00 111 1122
Q ss_pred HHHHHhcCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhch
Q 028388 90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL 168 (209)
Q Consensus 90 ~~~~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 168 (209)
..... .+..+|+|+... .......+.+.....+..+|||++|.+++.+|+..| +...... ... .+ +
T Consensus 80 ~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r--~~~~~~~--~~~---~~-~--- 146 (178)
T 1qhx_A 80 VAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR--GDRVAGM--AAK---QA-Y--- 146 (178)
T ss_dssp HHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT--SSSCTTH--HHH---HT-T---
T ss_pred HHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh--CCcccch--hhh---hc-h---
Confidence 22222 367899998553 223223333312223446899999999999999988 3211111 111 11 1
Q ss_pred hHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcC
Q 028388 169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT 201 (209)
Q Consensus 169 ~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~ 201 (209)
.+.. +. .. -+++|++ .+++++++.|.+.+.
T Consensus 147 ~~~~-~~-~~-d~~idt~~~~~~~~~~~I~~~l~ 177 (178)
T 1qhx_A 147 VVHE-GV-EY-DVEVDTTHKESIECAWAIAAHVV 177 (178)
T ss_dssp GGGT-TC-CC-SEEEETTSSCHHHHHHHHHTTCC
T ss_pred hhcc-CC-CC-cEEEECCCCCHHHHHHHHHHHhc
Confidence 1111 11 12 3566764 599999999988764
No 79
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.62 E-value=2.1e-14 Score=106.31 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=100.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCchH--HHHHHHH-----------------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMI----------------- 74 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~----------------- 74 (209)
..++.+|+|+|++||||||+++.|++.+|+++++.|++++.... .+.... ..+....
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence 34567999999999999999999999999999999999886432 332210 1111111
Q ss_pred -HcCC----CCCHHHHH-------------HHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHH
Q 028388 75 -KEGK----IVPSEVTI-------------KLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135 (209)
Q Consensus 75 -~~~~----~~~~~~~~-------------~~i~~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~ 135 (209)
..+. .+..+.+. ..+...... ..+.++|+||...... ....++++|||++|++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~--------~l~~~d~vi~L~a~~e 164 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV--------VLPQAELKIFLVASVD 164 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS--------SGGGCSEEEEEECCHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh--------hccCCCEEEEEECCHH
Confidence 1111 11111111 122222111 1356899998754210 1123578999999999
Q ss_pred HHHHHHhhc--cCCCCCCcHHHHHHHHHH--HHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 136 EMERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 136 ~~~~R~~~r--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
++.+|+..+ .+++ ....+.+.+.+.. +....+.+...+. ....++||++ .++++++++|.+.+..
T Consensus 165 ~~~~R~~~~~~~R~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~~-~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 165 ERAERRYKENIAKGI-ETDLETLKKEIAARDYKDSHRETSPLKQ-AEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHTTCSSSCCSC-CTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhhhhhhcccccccc-cCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999997322 1143 2344555544432 1111111111122 1234678876 5999999999988754
No 80
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.62 E-value=4.3e-15 Score=106.28 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC----CCCC-----------HH-
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVP-----------SE- 83 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~~- 83 (209)
..++|+|+|++||||||+++.|++.+|+++++.|++.++.+.. .. ..+.+.+... ..+. .+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~--~~-~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE--VK-EKLVELFGGSVLEDGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH--TH-HHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH--HH-HHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence 3568999999999999999999999999999999998887653 11 1111111110 0011 11
Q ss_pred ----------HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388 84 ----------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 84 ----------~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~ 153 (209)
.+...+...+... +..+|+|+ |...+. .+.. .++.+||+++|++++.+|+...
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~~-~~~vv~d~-pll~e~--~~~~----~~d~vi~v~a~~e~r~~Rli~~--------- 150 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINKT-SGLIVIEA-ALLKRM--GLDQ----LCDHVITVVASRETILKRNREA--------- 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-CEEEEEEC-TTTTTT--TGGG----GCSEEEEEECCHHHHHHHCSSH---------
T ss_pred HHHHHhhhCHHHHHHHHHHHHHc-CCEEEEEE-eceeec--ChHH----hCCEEEEEECCHHHHHHHHHHh---------
Confidence 1111222222222 45778885 332222 1222 3678999999999999997211
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
++..+.+. .....+ ++|+++.+++++.++|.+++..
T Consensus 151 -----q~~~~~~~-------~~~~AD-~vI~n~~~~~~l~~~v~~~~~~ 186 (192)
T 2grj_A 151 -----DRRLKFQE-------DIVPQG-IVVANNSTLEDLEKKVEEVMKL 186 (192)
T ss_dssp -----HHHHTTCT-------TCCCCS-EEEECSSCHHHHHHHHHHHHHH
T ss_pred -----cCCchhhh-------HHhcCC-EEEECCCCHHHHHHHHHHHHHH
Confidence 11111010 112233 4667778999999999887653
No 81
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.61 E-value=8e-15 Score=111.44 Aligned_cols=122 Identities=15% Similarity=0.191 Sum_probs=74.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcC----CCCCHHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLLQ 90 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~ 90 (209)
...+|.+|+|+|+|||||||+++.|++++ ++.+||.|. ++..... .......+.... ...........+.
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~ 104 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIIS 104 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHH
Confidence 34568899999999999999999999998 788898754 4322111 111111110000 0011122233444
Q ss_pred HHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHH----HHHHhhc
Q 028388 91 KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEM----ERRILNR 144 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~----~~R~~~r 144 (209)
..+. .+..+|+|+.+....+...+... ....+..++++.+|++++ .+|+..|
T Consensus 105 ~~l~--~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 105 RLSD--QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHHH--HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHHh--cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 4444 37889999988776644443321 112233478999999999 8888766
No 82
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.61 E-value=1.5e-14 Score=103.14 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=90.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH----H
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----I 86 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 86 (209)
....++.+|+|+|+|||||||+++.|++.++ +.+++.|. ++..+..... +..... .
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~--------------~~~~~r~~~~~ 72 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAG--------------FTREERLRHLK 72 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCC--------------CCHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccC--------------CChhhHHHHHH
Confidence 3345678999999999999999999999885 34566544 3332211111 111111 1
Q ss_pred H--HHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH-
Q 028388 87 K--LLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK- 161 (209)
Q Consensus 87 ~--~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~- 161 (209)
. .+...+. ..+..+++|++.........+..+ ....|+++|||++|++++.+|+..+ ...+..
T Consensus 73 ~~~~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~-----------~~~~~~~ 140 (186)
T 2yvu_A 73 RIAWIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKG-----------LYKKALK 140 (186)
T ss_dssp HHHHHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHH-----------HHHHHHT
T ss_pred HHHHHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhh-----------hhhHHhh
Confidence 1 1111122 246778889865444333333332 2335789999999999999997532 000000
Q ss_pred HHHhhchhHHHHHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 162 VFLESSLPVVQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 162 ~~~~~~~~~~~~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
............|.. ....+.+|++ .++++++++|.+.+..
T Consensus 141 ~~~~~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 141 GELENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp TCCSSCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 000000001111221 1234678886 7999999999988754
No 83
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.59 E-value=1.9e-14 Score=105.25 Aligned_cols=171 Identities=15% Similarity=0.237 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHcCCchHHHHHHH-------H-----------HcC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNM-------I-----------KEG 77 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~-------~-----------~~~ 77 (209)
+|++|+|+|++||||||+++.|++.+|+++++.|++++.. ...+. ...+.+. + ..+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence 3678999999999999999999999999999999998864 22222 1111111 0 111
Q ss_pred CCC----CHHHH-------------HHHHHHHHH-hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028388 78 KIV----PSEVT-------------IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139 (209)
Q Consensus 78 ~~~----~~~~~-------------~~~i~~~~~-~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~ 139 (209)
... ..... ...+..... ...+.++|+||.... . . ....++++|||++|++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~--~-----~-~~~~~~~vi~l~a~~e~~~~ 151 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIG--T-----V-VLPDADLKVYMIASVEERAE 151 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHHHH
T ss_pred ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCcc--c-----e-ecCCCCEEEEEECCHHHHHH
Confidence 111 11111 111111111 113567899974210 0 0 22346789999999999999
Q ss_pred HHhhc--cCCCCCCcHHHHHHHHHHH--HhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 140 RILNR--NQGREDDNVETIRKRFKVF--LESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 140 R~~~r--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
|+..+ .++. ....+.+.+++... .+..+.....+. ....++||++ .++++++++|.+.+..
T Consensus 152 R~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~~-~~d~~~Id~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 152 RRYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLRK-ADDAVTLDTTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSCC-CTTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhcccccc-CCCeEEEECCCCCHHHHHHHHHHHHhc
Confidence 97532 1133 22455555555321 111111111122 2344677776 5999999999988753
No 84
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.57 E-value=7.7e-15 Score=108.20 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=41.2
Q ss_pred CCCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhhchhHHHHH--hhcCcEEEEcCCCChHHHHHHH
Q 028388 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSLPVVQYY--EAKGKVRKIDAAKPVAEVFDAV 196 (209)
Q Consensus 121 ~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~ee~~~~i 196 (209)
...||++|||++|++++.+|+.+| ++..+. ...+.+++...+..+ ...+ .....+++||++.+++++.++|
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~---~~~~~~~~~~~~~vId~~~~~eev~~~I 218 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDW---LIHQRRPQSCKVLVLDADLNLENIGTEY 218 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHH---HTSCCSSCCCEEEEEECCC---------
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHH---HHHhcccCCCCEEEEECCCCHHHHHHHH
Confidence 567999999999999999999988 554332 124555555443322 1111 2345689999999999999999
Q ss_pred HHhcCcchhh
Q 028388 197 KAVFTPKDEK 206 (209)
Q Consensus 197 ~~~i~~~~~~ 206 (209)
.+.+......
T Consensus 219 ~~~l~~~~~~ 228 (230)
T 2vp4_A 219 QRSESSIFDA 228 (230)
T ss_dssp ----------
T ss_pred HHHHHHHhhc
Confidence 9988776544
No 85
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.57 E-value=1.3e-14 Score=105.56 Aligned_cols=164 Identities=13% Similarity=0.159 Sum_probs=90.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLL 89 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i 89 (209)
...++++|+|+|+|||||||+++.|++.++ +.+++.+.+ +..+.....+. ......+ ..+...+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~ 91 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVA 91 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHH
Confidence 345678999999999999999999999887 777776443 32221111111 0000000 0011122
Q ss_pred HHHHHhcCCCeEEEeCCCCC-HHHHHHHHHh-c-------CCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388 90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAV-T-------KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF 160 (209)
Q Consensus 90 ~~~~~~~~~~~~i~dg~~~~-~~~~~~~~~~-~-------~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~ 160 (209)
...+. .+..||+| +... ......+..+ . ...|+++|||++|++++.+|+. | + .+.+.-
T Consensus 92 ~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~-r----~-----~~~~~r 158 (211)
T 1m7g_A 92 KLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP-K----G-----LYKKAR 158 (211)
T ss_dssp HHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT-T----C-----HHHHHH
T ss_pred HHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh-H----H-----HHHHHH
Confidence 23333 46789999 4422 2233334432 1 1257899999999999999952 1 0 000000
Q ss_pred HHHHhhchhHHHHHhhc-CcEEEEcCCC-ChHHHHHHHHHhcCc
Q 028388 161 KVFLESSLPVVQYYEAK-GKVRKIDAAK-PVAEVFDAVKAVFTP 202 (209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~id~~~-~~ee~~~~i~~~i~~ 202 (209)
..|......+...|+.. ...++||++. ++++++++|.+.+..
T Consensus 159 ~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 159 EGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp HTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 01111111111123221 2247888877 999999999988754
No 86
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.49 E-value=4.6e-14 Score=104.72 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=47.7
Q ss_pred CCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhhch-----hH-HHHHhhcCcEEEEcCCCChHHHH
Q 028388 122 IEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSL-----PV-VQYYEAKGKVRKIDAAKPVAEVF 193 (209)
Q Consensus 122 ~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~id~~~~~ee~~ 193 (209)
..||++|||++|++++.+|+.+| ++..+. ...+.+++...+..+. |+ ...+ ....++++|++.+++++.
T Consensus 148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCH
T ss_pred cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCH
Confidence 37999999999999999999988 554443 1333444333322110 00 0011 345789999988877766
Q ss_pred HHHHHhcC
Q 028388 194 DAVKAVFT 201 (209)
Q Consensus 194 ~~i~~~i~ 201 (209)
+.+...+.
T Consensus 225 ~~i~~i~~ 232 (241)
T 2ocp_A 225 TKQEDLMR 232 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 87
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.48 E-value=1.3e-12 Score=92.45 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHh-HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--HHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--QKAM 93 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~ 93 (209)
++.+|+|+|++||||||+++.|++.+ |++++..+ +.++..+.....+.... ....+.... ...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 73 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKLF 73 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHHH
Confidence 56899999999999999999999998 87776432 33332211100000000 001111111 1112
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388 94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 94 ~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
.. .+..++.+...........+..+ ....|+++|||++|++++.+|+.+| . ..+.-..++..+ ....+.+
T Consensus 74 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~--~----~~~~~~~~~~~~-~~~~~~~ 145 (179)
T 2pez_A 74 AD-AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG--L----YKKARAGEIKGF-TGIDSEY 145 (179)
T ss_dssp HH-TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS--H----HHHHHTTSSCSC-BTTTBCC
T ss_pred HH-CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh--h----HHHHhccccccc-ccCCccc
Confidence 22 34444444331221111222211 2336789999999999999997643 0 000000000000 0000000
Q ss_pred HHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
+. .....+++.+++.+++++.++|.+.+..
T Consensus 146 ~~-~~~ad~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 146 EK-PEAPELVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp CC-CSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred cC-CCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 00 1123454445566999999999988753
No 88
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.46 E-value=7.1e-13 Score=95.55 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=88.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---CCc--eecHhHHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQK 91 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~--~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~ 91 (209)
..++.+|+|.|++||||||+++.|+..+ |.. +++.+++.. .+.....+. ......+ .. ...+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~--------~~-~~~~~~ 91 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENI--------RR-VGEVAK 91 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHH--------HH-HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHH--------HH-HHHHHH
Confidence 4568899999999999999999999999 555 777765432 111111111 0000000 00 011112
Q ss_pred HHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh------hccCCCCCCcHHHHHHHHHHHHh
Q 028388 92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL------NRNQGREDDNVETIRKRFKVFLE 165 (209)
Q Consensus 92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~------~r~~~~~~~~~~~~~~~~~~~~~ 165 (209)
.+. ..+..++.+...........+..+........|||++|++++.+|.. .| .........+
T Consensus 92 ~~~-~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r--~~~~~~~~~~--------- 159 (200)
T 3uie_A 92 LFA-DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLAR--AGKIKGFTGI--------- 159 (200)
T ss_dssp HHH-HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHH--TTSSCSCBTT---------
T ss_pred HHH-hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHh--cCCCCCCCCC---------
Confidence 222 23677777765455556666665222223457999999999999972 22 1110000000
Q ss_pred hchhHHHHHhhc-CcEEEEcCC--CChHHHHHHHHHhcCc
Q 028388 166 SSLPVVQYYEAK-GKVRKIDAA--KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~id~~--~~~ee~~~~i~~~i~~ 202 (209)
...|+.. ..-+++|++ .++++++++|.+.+..
T Consensus 160 -----~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~ 194 (200)
T 3uie_A 160 -----DDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDN 194 (200)
T ss_dssp -----TBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred -----CCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 0112221 223577765 5999999999988854
No 89
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.46 E-value=4.7e-13 Score=94.96 Aligned_cols=165 Identities=16% Similarity=0.284 Sum_probs=94.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCch----HHHHHHHHHcCCCCCHHH--------HH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPSEV--------TI 86 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~--------~~ 86 (209)
.|+|+||+|||||||++.|.+.+.- ..++.....|....+ +..+ ...+...+..+.++.... ..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 4899999999999999999887632 223322222222111 1110 133444444443332211 14
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES 166 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (209)
..++..+. .+..+|+|..+ .-...+.......+..++++..+.+++.+|+..| +. +..+.+.+|+......
T Consensus 83 ~~v~~~l~--~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~R--g~--e~~e~i~~Rl~~a~~e 153 (186)
T 1ex7_A 83 ASVKQVSK--SGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQAE 153 (186)
T ss_dssp HHHHHHHH--HTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH--CC--SCHHHHHHHHHHHHHH
T ss_pred ceeeehhh--CCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHH
Confidence 55666666 37899999653 2222333211124545555566789999999988 43 4567888887765442
Q ss_pred chhHHHHHh-hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 167 SLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 167 ~~~~~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
. .... ..-+.+++|. ++++.++++.+.|.+
T Consensus 154 ~----~~~~~~~fD~vIvNd--dle~a~~~l~~iI~a 184 (186)
T 1ex7_A 154 L----AYAETGAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp H----HHHTTTCSSEEEECS--SHHHHHHHHHHHHTT
T ss_pred H----hhccccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 1 1111 1224556665 699999999998864
No 90
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.45 E-value=2.4e-13 Score=101.55 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=71.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHH------Hc--CCchHHHHHHHHHcCCCCCHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEI------KS--GSENGTMIQNMIKEGKIVPSEVTI 86 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (209)
....|.+|+|+|+|||||||+++.|++.++ +.+++.|. ++..+ .. +.......... ......
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~~-------~~~~~~ 99 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKDF-------AGKMVE 99 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHHH-------HHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhHH-------HHHHHH
Confidence 345688999999999999999999999997 55666654 33221 11 11111111100 011122
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
.++...+. .+..+|+|+++....+...+... ....+..++++.+|++++.+|...|
T Consensus 100 ~~~~~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 100 SLVTKLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 33333333 35689999988766544433332 1222334678899999999999988
No 91
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.45 E-value=1.1e-12 Score=108.42 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHh-HHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAME 94 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 94 (209)
++++|+|+|+|||||||+++.|++++ |+.++..| +.++..+.....+. ....+.+. .+...+...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l~ 122 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFAD 122 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHHh
Confidence 68899999999999999999999999 87766553 44444322211111 01111110 01112222222
Q ss_pred hcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 95 ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 95 ~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
.+..++.|...........+..+ ....++++|||++|++++.+|+.++ ...+... .. .+ ...
T Consensus 123 --~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~-~~-------~~-~~~--- 188 (630)
T 1x6v_B 123 --AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGE-IK-------GF-TGI--- 188 (630)
T ss_dssp --TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC------------C-BTT---
T ss_pred --CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhh-HH-------HH-HHh---
Confidence 46777777322122222333322 3345788999999999999998743 1111111 00 01 111
Q ss_pred HHHHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 171 VQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 171 ~~~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
...|+. ...-++||++ .++++++++|.+.|..
T Consensus 189 ~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~ 222 (630)
T 1x6v_B 189 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE 222 (630)
T ss_dssp TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHh
Confidence 111221 1122677775 6999999999988753
No 92
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.40 E-value=3.1e-12 Score=105.09 Aligned_cols=163 Identities=16% Similarity=0.113 Sum_probs=90.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-----ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 93 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (209)
..+++|+++|+|||||||+++.|++.++. .+++.| .+++.+.....+...-+... ...+...+...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l 441 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIV 441 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHH-------HHHHHHHHHHHH
Confidence 35789999999999999999999999864 677764 45554322221111111000 000112222222
Q ss_pred HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388 94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (209)
Q Consensus 94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (209)
. .+.++|+|...........+.. ....++ ++|||++|.+++.+|+.++ ....... ..+..+.....+
T Consensus 442 ~--~G~~VI~d~~~~~~~~r~~~~~-~l~~~d~~vV~L~~~~e~~~~Rl~r~--~~~~~~~----~~i~~~~~vr~~--- 509 (546)
T 2gks_A 442 K--HNGVVICALVSPYRSARNQVRN-MMEEGKFIEVFVDAPVEVCEERDVKG--LYKKAKE----GLIKGFTGVDDP--- 509 (546)
T ss_dssp H--TTCEEEEECCCCCHHHHHHHHT-TSCTTCEEEEEEECCGGGHHHHCCSS--HHHHC----------CCBTTTBC---
T ss_pred h--CCCEEEEEcCCCCHHHHHHHHH-HhhcCCEEEEEEeCCHHHHHHHhhcc--ccccccH----HHHHHHHhhhhc---
Confidence 2 4789999975444444444444 222356 7999999999999997632 0000000 111111111011
Q ss_pred HHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 173 YYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 173 ~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
|.. ....++||++ .++++++++|.+.+..
T Consensus 510 -~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 510 -YEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp -CCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred -cccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 111 1123677774 7999999999988753
No 93
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.38 E-value=2.5e-12 Score=92.81 Aligned_cols=169 Identities=14% Similarity=0.231 Sum_probs=86.2
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH---cCCc----hHHHHHHHHHcCCCCC--------
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGSE----NGTMIQNMIKEGKIVP-------- 81 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~-------- 81 (209)
.|.++.+|+|+||+||||||+++.|+..+....++..++.+.... .+.. ....+......+....
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERH 82 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEE
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccc
Confidence 455678999999999999999999998764222221111100000 0000 0011111110000000
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388 82 SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK 161 (209)
Q Consensus 82 ~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (209)
.......+...+. .+..+++|+.+ .....+.. ....+..++++.++++++.+|+..| ++. ..+.+.+++.
T Consensus 83 ~~~~~~~i~~~l~--~g~~vi~d~~~---~~~~~~~~-~~~~~~~v~~~~~~~e~l~~Rl~~R--~~~--~~~~i~~rl~ 152 (205)
T 3tr0_A 83 YGTEKDWVLRQLK--AGRDVLLEIDW---QGARQIRE-LFPPALSIFILPPSIEALRERLIKR--RQD--DTAIIEQRLA 152 (205)
T ss_dssp EEEEHHHHHHHHH--TTCEEEEECCH---HHHHHHHH-HCTTCEEEEEECSCHHHHHHHHHTC--TTS--CSSTHHHHHH
T ss_pred ccchHHHHHHHHH--cCCeEEEEECH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHHh--CCC--CHHHHHHHHH
Confidence 0000123444444 36788999643 22223333 3444544444455799999999988 432 2334555555
Q ss_pred HHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..... ..++ ...+++++|+ +++++.+++.+.|..
T Consensus 153 ~~~~~----~~~~-~~~d~vi~n~--~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 153 LAREE----MAHY-KEFDYLVVND--NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHHHH----HTTG-GGCSEEEECS--SHHHHHHHHHHHHHH
T ss_pred HHHHH----Hhcc-cCCCEEEECC--CHHHHHHHHHHHHHH
Confidence 44332 1222 2334555544 899999999988854
No 94
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.38 E-value=1.4e-14 Score=105.43 Aligned_cols=161 Identities=17% Similarity=0.257 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecH-------------hHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-------------GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL 88 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (209)
++|+|+|++||||||+++.|++.++...++. ++.++..+.+.. +..........+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~------------~~~~~~~~~~~~ 68 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEH------------GDLASSVYAMAT 68 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEE------------EEEEEEHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccc------------cccCCCHhHHHH
Confidence 4799999999999999999999985322111 222333221100 000000100000
Q ss_pred ---H-----HHHHHh--cCCCeEEEeCCCCCHH--H------------HHHHHHh-----cCCCCcEEEEEecCHHHHHH
Q 028388 89 ---L-----QKAMEE--SGNDKFLIDGFPRNEE--N------------RAAFEAV-----TKIEPEFVLFFDCSEEEMER 139 (209)
Q Consensus 89 ---i-----~~~~~~--~~~~~~i~dg~~~~~~--~------------~~~~~~~-----~~~~~~~~i~L~~~~~~~~~ 139 (209)
. ...+.. ..+..+|+|+++.+.. + ...+..+ ....|+.+|||++|++++.+
T Consensus 69 ~~~~~r~~~~~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~ 148 (214)
T 1gtv_A 69 LFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGE 148 (214)
T ss_dssp HHHHHHHEEHHHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHH
Confidence 0 011111 1367899999864421 1 1112221 12368999999999999999
Q ss_pred HHhhccC---CCCCCc---HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHH
Q 028388 140 RILNRNQ---GREDDN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198 (209)
Q Consensus 140 R~~~r~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~ 198 (209)
|+..|.. ++..+. ...+.+++...+.. ....+. ...+++||++.+++++.++|.+
T Consensus 149 R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~---~~~~~~-~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 149 RSRGRAQRDPGRARDNYERDAELQQRTGAVYAE---LAAQGW-GGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp HHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHH---HHHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred HHHcccccccccccccccccHHHHHHHHHHHHH---HHHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence 9998811 111111 13444444322211 111010 1357889998899999888753
No 95
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.38 E-value=9.5e-13 Score=107.61 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=83.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCc-----eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-----HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SEVTIKL 88 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 88 (209)
+..|.+|+++|+|||||||+++.|++.+++. +++.|++.+.. ....... .++....... .......
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~-~~~~~~~----~~f~~~~~~~~~~re~~~~~~ 106 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA-VKQYSSY----NFFRPDNEEAMKVRKQCALAA 106 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HSCCCCG----GGGCTTCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh-ccCCccc----cccCcccHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999643 46777755444 3321110 0010000000 0111111
Q ss_pred HH---HHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecC-HHHHHHHHhhccCCCCC----Cc---HHH
Q 028388 89 LQ---KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCS-EEEMERRILNRNQGRED----DN---VET 155 (209)
Q Consensus 89 i~---~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~-~~~~~~R~~~r~~~~~~----~~---~~~ 155 (209)
+. ..+....+..+|+|+.+........+..+ ......++|++.|+ ++.+.+|+..|...++. +. .+.
T Consensus 107 l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~ 186 (520)
T 2axn_A 107 LRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDD 186 (520)
T ss_dssp HHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHH
Confidence 22 22222357899999998887777665443 11112346666676 67777888666212221 22 234
Q ss_pred HHHHHHHHHhhchhH
Q 028388 156 IRKRFKVFLESSLPV 170 (209)
Q Consensus 156 ~~~~~~~~~~~~~~~ 170 (209)
+.+|+..|.....++
T Consensus 187 ~~~Ri~~y~~~Yepi 201 (520)
T 2axn_A 187 FMKRISCYEASYQPL 201 (520)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHhhhhhhccc
Confidence 556677776666555
No 96
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=9.9e-12 Score=90.09 Aligned_cols=166 Identities=16% Similarity=0.288 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCH--------
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS-------- 82 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~-------- 82 (209)
.++.+|+|+||+||||||+++.|++.++. .........+..... +.. ....+...+..+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 46789999999999999999999998742 111110000000000 000 00111111111111100
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388 83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFK 161 (209)
Q Consensus 83 ~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~ 161 (209)
......+...+. .+..+|+|..+ .....+.. ....+ .+||+.+ +.+++.+|+..| +. +..+.+.+++.
T Consensus 86 g~~~~~i~~~l~--~g~~vild~~~---~g~~~~~~-~~~~~-~~i~i~~ps~~~l~~Rl~~R--~~--~~~e~i~~Rl~ 154 (208)
T 3tau_A 86 GTPLEYVEEKLA--AGVDIFLEIEV---QGAMQVRK-AMPEG-IFIFLTPPDLSELKNRIIGR--GT--ESMEVVEERME 154 (208)
T ss_dssp EEEHHHHHHHHH--TTCCEEEECCH---HHHHHHHH-HCTTS-EEEEEECTTTTTSSCC-----------CCHHHHHHHH
T ss_pred CCcHHHHHHHHH--cCCeEEEEeeH---HHHHHHHH-hCCCe-EEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHH
Confidence 000233455554 47889999643 22233333 33344 4556555 489999999987 43 34467777776
Q ss_pred HHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..... ..+ ....+++++|. +++++++++.+.|..
T Consensus 155 ~~~~e----~~~-~~~~d~vivN~--~~~~~~~~l~~~i~~ 188 (208)
T 3tau_A 155 TAKKE----IEM-MASYDYAVVND--VVANAVQKIKGIVET 188 (208)
T ss_dssp HHHHH----HHH-GGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred HHHHH----HHh-hccCCEEEECc--CHHHHHHHHHHHHHH
Confidence 55432 122 22334556655 699999999988854
No 97
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.33 E-value=1.4e-11 Score=101.65 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=86.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC------ceecHhHHHHHHHHcCCchHHHHHH-HHHcCCCCCHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVPSEVTIKLLQ 90 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 90 (209)
..++++|+|+|+|||||||+++.|+++|+. .+++.| .++..+.....+...-+. .+ ..+...+.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D-~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~ 463 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD-TVRHELSSELGFTREDRHTNI--------QRIAFVAT 463 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH-HHHHHTCTTCCCSHHHHHHHH--------HHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH-HHHHHhccccCCChhHHHHHH--------HHHHHHHH
Confidence 346789999999999999999999999872 456654 444432221111110000 00 00111222
Q ss_pred HHHHhcCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchh
Q 028388 91 KAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP 169 (209)
Q Consensus 91 ~~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (209)
.... .+..+|+|........+..+..+ ....+.++|||++|++++.+|..++ .-.......+..+.....+
T Consensus 464 ~~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~------l~~~~~~~~i~~~~~~r~~ 535 (573)
T 1m8p_A 464 ELTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG------IYAAARRGEIKGFTGVDDP 535 (573)
T ss_dssp HHHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC------HHHHHHTTSSSSCBTTTBC
T ss_pred HHHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc------chhhhhHHHHHHHHhcccc
Confidence 2222 36778888433223333333332 1112458999999999999995422 0000000000011111111
Q ss_pred HHHHHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 170 VVQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 170 ~~~~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
|.. ...-++||++ .++++++++|...|..
T Consensus 536 ----~~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 536 ----YETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp ----CCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred ----ccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 111 1223677875 5999999999988754
No 98
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.31 E-value=2.3e-11 Score=88.21 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=32.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL 56 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~ 56 (209)
..++.+|.|.|++||||||+++.|+..++ +.+++.|.++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 45678999999999999999999999998 8888876644
No 99
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.31 E-value=2.4e-12 Score=93.05 Aligned_cols=165 Identities=16% Similarity=0.247 Sum_probs=67.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHH---cCCc----hHHHHHHHHHcCCCCCHH-------
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIK---SGSE----NGTMIQNMIKEGKIVPSE------- 83 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~------- 83 (209)
.++.+|+|+|++||||||+++.|+..+ ....+..++..+.... .+.. ....+......+......
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 457899999999999999999999877 2111111111110000 0000 001111111111111000
Q ss_pred -HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388 84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRF 160 (209)
Q Consensus 84 -~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~-~~i~L~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~ 160 (209)
.....+...+. .+..+|+|+.+... ..+.. .. ++ .++|+. ++.+++.+|+..| +. +..+.+.+++
T Consensus 84 g~~~~~i~~~l~--~g~~vv~d~~~~~~---~~~~~-~~--~~~~~i~~~~~~~~~~~~Rl~~R--~~--~~~~~~~~rl 151 (207)
T 2j41_A 84 GTPVQYVKDTMD--EGHDVFLEIEVEGA---KQVRK-KF--PDALFIFLAPPSLEHLRERLVGR--GT--ESDEKIQSRI 151 (207)
T ss_dssp EEEHHHHHHHHH--TTCEEEEECCGGGH---HHHHH-HC--TTSEEEEEECCC---------------------------
T ss_pred CCCHHHHHHHHH--cCCeEEEEECHHHH---HHHHH-hc--CCeEEEEEECCCHHHHHHHHHhc--CC--CCHHHHHHHH
Confidence 01223444444 36889999864332 22333 22 23 344444 5678999999877 32 3345566666
Q ss_pred HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
..+.... .++. ...+++ +++ +++++.++|.+.+..
T Consensus 152 ~~~~~~~----~~~~-~~d~vI-~n~-~~e~~~~~i~~~l~~ 186 (207)
T 2j41_A 152 NEARKEV----EMMN-LYDYVV-VND-EVELAKNRIQCIVEA 186 (207)
T ss_dssp ----CGG----GGGG-GCSEEE-ECS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHH----hccc-cCCEEE-ECC-CHHHHHHHHHHHHHH
Confidence 5544322 1222 234544 444 899999999988754
No 100
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.30 E-value=8.4e-12 Score=96.01 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
.++++|+|+|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34689999999999999999999999864
No 101
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.25 E-value=2e-11 Score=92.82 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR 57 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~ 57 (209)
++.+|.|+|++||||||+++.|++.++ +.+++.|++++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 577999999999999999999999887 78899988774
No 102
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.24 E-value=9.4e-11 Score=87.04 Aligned_cols=177 Identities=18% Similarity=0.236 Sum_probs=91.3
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCc----------eecHhHHHHHHHHcCCchHHHHHHHHHcC-----CC
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KI 79 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 79 (209)
++...++.+|.|.|++||||||+++.|+..+|.. +++.+.+++. -............. ..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~-----l~~~~~~~~~~~~~~~~~~~~ 93 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKV-----LTAEQKAKALKGQYNFDHPDA 93 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCC-----CCHHHHHHHHTTCCCTTSGGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccc-----cCHhHhhhhhccCCCCCCccc
Confidence 3455677899999999999999999999988865 5666543211 01111111111100 01
Q ss_pred CCHHHHHHHHHHHHH----------------------hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388 80 VPSEVTIKLLQKAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137 (209)
Q Consensus 80 ~~~~~~~~~i~~~~~----------------------~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~ 137 (209)
...+.+.+.+..... ......+|+|+....... .+.. ..+..|++.++.+..
T Consensus 94 ~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~--~l~~----~~~~~i~v~th~~~~ 167 (245)
T 2jeo_A 94 FDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQ--EIRD----MFHLRLFVDTDSDVR 167 (245)
T ss_dssp BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSH--HHHT----TCSEEEEEECCHHHH
T ss_pred ccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccH--HHHH----hcCeEEEEECCHHHH
Confidence 112222333332210 012357889984322111 1222 147899999999877
Q ss_pred HHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHH----HhhcCcEEE---EcCCCChHHHHHHHHHhcCcchhh
Q 028388 138 ERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY----YEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDEK 206 (209)
Q Consensus 138 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---id~~~~~ee~~~~i~~~i~~~~~~ 206 (209)
..|...|.. ......+.+.+++. ....+..+. .....++++ +|++.+.+++.++|.++++.....
T Consensus 168 ~~r~~~r~~-~~G~~~e~~~~~~~---~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~~~~~ 239 (245)
T 2jeo_A 168 LSRRVLRDV-RRGRDLEQILTQYT---TFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICK 239 (245)
T ss_dssp HHHHHHHHT-C---CHHHHHHHHH---HTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHH---HhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhcchhh
Confidence 766655511 11224455554433 222222221 233345544 366778999999999888765443
No 103
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.21 E-value=1.6e-10 Score=82.44 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=90.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHc--CCchHHHHHHHHHcCCCCCHHHHH-------H-
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTI-------K- 87 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~- 87 (209)
+.+|+|+|.|||||+|++..|.+.+| +.+++.+|.+++.... +-.+...+... ...+. ....+. .
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~-~ykE~-~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS-TYKEA-FRKDMIRWGEEKRQA 88 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC--------CCSS-HHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchh-hhHHH-HHHHHHHHHHHHHhc
Confidence 35899999999999999999999885 7789999999864332 11111100000 00000 000000 0
Q ss_pred ---HHHHH-HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388 88 ---LLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 88 ---~i~~~-~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (209)
.+.+. +.......+|+||. +...+.+.|.+ .....-.+|.+.+++++..+|.-.+..++. +...
T Consensus 89 d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~-~~g~~~~iirI~as~~~R~~Rg~~~~~~~D-d~es--------- 156 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVFTPGVD-DAES--------- 156 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHH-HHGGGEEEEEEEECHHHHHHTTCCCCTTTT-TSHH---------
T ss_pred CchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHH-hCCCcEEEEEEECCHHHHHHHhhhcccccc-cccc---------
Confidence 00111 11223457889986 88888888887 332334589999999999999543311222 2111
Q ss_pred HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
+. .+ ..+ ...++ +|+++.+.+++.+++..++..
T Consensus 157 -E~--gL-~~~-~~~D~-vI~Ndgt~eel~~~v~~ll~~ 189 (202)
T 3ch4_B 157 -EC--GL-DNF-GDFDW-VIENHGVEQRLEEQLENLIEF 189 (202)
T ss_dssp -HH--TT-TTC-CCCSE-EEEECSCHHHHHHHHHHHHHH
T ss_pred -cc--CC-CCC-CcCCE-EEEeCCCHHHHHHHHHHHHHH
Confidence 00 01 111 12344 444445899888887776543
No 104
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.20 E-value=1.7e-11 Score=94.19 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.++++|.|+|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999999885
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.20 E-value=6.7e-11 Score=85.23 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=55.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh---CCc--eecHhHHHHHHH---HcCCchHHHHHHHHHcCCCCCHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEI---KSGSENGTMIQNMIKEGKIVPSEVTIKL 88 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~--~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (209)
...++.+|+|+|++||||||+++.|+..+ +.. +++.|.+..... ..+...+. .+.. .....+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~--~~~d~~~l~~~ 92 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY--LQWDVEWLTHQ 92 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH--TSSCHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc--cccCHHHHHHH
Confidence 34567899999999999999999999876 433 344444332210 11111111 1110 11222222222
Q ss_pred HHHHH-----------------------HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388 89 LQKAM-----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 89 i~~~~-----------------------~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r 144 (209)
+...+ ....+..+|+||....... +. ..+|.+||+++|.+++.+|+.+|
T Consensus 93 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~----~~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 93 LFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR----PFFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp TGGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG----GGCSEEEEECCC-----------
T ss_pred HHHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH----hhcCEEEEEeCCHHHHHHHHhcC
Confidence 21100 0112568899986432111 11 13679999999999999999988
No 106
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.19 E-value=2.7e-11 Score=94.30 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.++++|.|+|+.||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45677999999999999999999999885
No 107
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.19 E-value=1.5e-10 Score=89.20 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=26.7
Q ss_pred CCCCeEEEEEcCCCCChhHHH-HHHHHHhCC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQC-ANIVEHFGY 47 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla-~~L~~~l~~ 47 (209)
+.++++|+|+|+.||||||++ +.|++.++.
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 445789999999999999999 999999874
No 108
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.17 E-value=1.8e-10 Score=81.91 Aligned_cols=166 Identities=16% Similarity=0.267 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHH---cCCc----hHHHHHHHHHcCCCCCH--------HH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIK---SGSE----NGTMIQNMIKEGKIVPS--------EV 84 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~--------~~ 84 (209)
|.+++|.||+||||||+++.|+..+...+ ++..+..+.... .+.. ....+......+..... ..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 45799999999999999999997663100 000000000000 0000 00111111111111100 00
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388 85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVF 163 (209)
Q Consensus 85 ~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 163 (209)
....++..+. .+..+++|-. ......+.. .......+||+.+|. +++.+|+..| ++ +..+.+.+|+...
T Consensus 81 ~~~~i~~~l~--~g~~~il~~~---~~g~~~l~~-~~~~~~~~i~i~~p~~~~l~~Rl~~R--g~--~~~~~i~~rl~~~ 150 (186)
T 3a00_A 81 TVASVKQVSK--SGKTCILDID---MQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAA 150 (186)
T ss_dssp EHHHHHHHHH--TTCEEEEECC---HHHHHHHHT-CGGGCCEEEEEECSCC-----------------------------
T ss_pred cHHHHHHHHH--cCCeEEEEEc---HHHHHHHHH-hcCCCeEEEEEECcCHHHHHHHHHhc--CC--CCHHHHHHHHHHH
Confidence 0233455554 4788999843 222222222 012223578888866 9999999987 43 3345566665554
Q ss_pred HhhchhHHHHH-hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 164 LESSLPVVQYY-EAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 164 ~~~~~~~~~~~-~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
... +... ....+.+++|. +++++++++.+.|..
T Consensus 151 ~~~----~~~~~~~~~d~vi~nd--~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 151 QAE----LAYAETGAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp ------------CCCCSEEEECS--SHHHHHHHHHHHHTT
T ss_pred HHH----HHhhcccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 332 1111 12234555554 799999999988865
No 109
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.17 E-value=7.4e-11 Score=88.03 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHH-HHHcC--CchHHHHHH----HHHcC----CCCCHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIKSG--SENGTMIQN----MIKEG----KIVPSEVTIKLLQ 90 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~-~~~~~--~~~~~~~~~----~~~~~----~~~~~~~~~~~i~ 90 (209)
++|+|+|+|||||||+|+.|++++++.+++.|++... .+.-. ......... ++... ..+..........
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4799999999999999999999999999998775311 00000 000000000 00000 0122333333444
Q ss_pred HHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcC---CCC-cEEEEEecCH-HHHHHHHhhc
Q 028388 91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAVTK---IEP-EFVLFFDCSE-EEMERRILNR 144 (209)
Q Consensus 91 ~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~---~~~-~~~i~L~~~~-~~~~~R~~~r 144 (209)
..+.. ..+..+|+++-.. .....+.. .. ... ..++||++|. +++.+|+.+|
T Consensus 82 ~~i~~~~~g~~vIl~gg~~--~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 82 FEVDWRKSEEGLILEGGSI--SLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp HHHHTTTTSSEEEEEECCH--HHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEeccHH--HHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHH
Confidence 44411 1356677765321 22222222 20 112 2699999997 9999999999
No 110
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.17 E-value=8.8e-11 Score=95.14 Aligned_cols=148 Identities=16% Similarity=0.258 Sum_probs=80.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----ceecHhHHHHHHHHcCCchHHHHHHHHHcCCC----CCHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKL 88 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 88 (209)
..++.+|+++|.|||||||+++.|++.+++ ..++.+++.... .+..... +.+..... ....+....
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~----~ifd~~g~~~~r~re~~~~~~ 110 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSF----EFFLPDNEEGLKIRKQCALAA 110 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCG----GGGCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcc----cccCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999864 445555543332 2221000 00000000 000111112
Q ss_pred ---HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe---cCHHHHHHHHhhccCCCCC---CcH----HH
Q 028388 89 ---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD---CSEEEMERRILNRNQGRED---DNV----ET 155 (209)
Q Consensus 89 ---i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~---~~~~~~~~R~~~r~~~~~~---~~~----~~ 155 (209)
+...+....+.++|+|........+..+..........++||+ .+++.+.+|+..+...+++ ... +.
T Consensus 111 l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~ 190 (469)
T 1bif_A 111 LNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATED 190 (469)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHH
Confidence 2444444457899999988888776666442111112356677 5577788887755222222 122 34
Q ss_pred HHHHHHHHHhhchhH
Q 028388 156 IRKRFKVFLESSLPV 170 (209)
Q Consensus 156 ~~~~~~~~~~~~~~~ 170 (209)
+.+++..|.....++
T Consensus 191 ~~~R~~~y~~~ye~l 205 (469)
T 1bif_A 191 FMRRIECYENSYESL 205 (469)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHhccEeEEC
Confidence 555566666655554
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.16 E-value=1.1e-09 Score=77.91 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN 98 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 98 (209)
.+++|.|++||||||+++.|+..++. .+++.+++.... ..+... .. ............+...... ..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~-~~-------~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRP-PW-------ESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCC-GG-------GCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccccc-Cc-------cchhHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999988765 678776654321 000000 00 0000000111111111111 135
Q ss_pred CeEEEeCCCCCHHHHHHHHHh---cCCC-CcEEEEEecCHHHHHHHHhhc
Q 028388 99 DKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNR 144 (209)
Q Consensus 99 ~~~i~dg~~~~~~~~~~~~~~---~~~~-~~~~i~L~~~~~~~~~R~~~r 144 (209)
..+|+|++. .......+..+ .... ...+++|.++++++.+|...|
T Consensus 74 ~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r 122 (189)
T 2bdt_A 74 NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR 122 (189)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence 678999853 33333333321 1222 234788999999999999987
No 112
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.16 E-value=3.8e-10 Score=82.97 Aligned_cols=175 Identities=15% Similarity=0.146 Sum_probs=68.1
Q ss_pred CCccccCcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHH-HHhC----------------------CceecHhHHHH
Q 028388 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIV-EHFG----------------------YTHLSAGDLLR 57 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~-~~l~----------------------~~~i~~~~~~~ 57 (209)
||+.-..-.. ..++....+.+|+|+||+||||||+++.|+ ..+. +...+. ..+.
T Consensus 9 ~~~~~~~~~~--~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~ 85 (231)
T 3lnc_A 9 MGTLEAQTQG--PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDR-EEFL 85 (231)
T ss_dssp ---------------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCH-HHHH
T ss_pred cchhhhcccC--CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecH-HHhh
Confidence 4554433322 233444567899999999999999999999 6652 111122 1111
Q ss_pred HHHHcCCchHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHH
Q 028388 58 AEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEE 135 (209)
Q Consensus 58 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~~ 135 (209)
.....+.... .. ..+..+. .....+...+. .+..+++|.. ......+.. .. ..+..+++..++.+
T Consensus 86 ~~~~~~~~~~-----~~~~~~~~~~--~~~~~i~~~~~--~~~~vild~~---~~g~~~~~~-~~~~~~~~v~v~~~~~~ 152 (231)
T 3lnc_A 86 RLCSNGEIIE-----HAEVFGNFYG--VPRKNLEDNVD--KGVSTLLVID---WQGAFKFME-MMREHVVSIFIMPPSME 152 (231)
T ss_dssp HHHHTTCEEE-----EEEETTEEEE--EECTTHHHHHH--HTCEEEEECC---HHHHHHHHH-HSGGGEEEEEEECSCHH
T ss_pred hhhhcCceeh-----hhhhccccCC--CCHHHHHHHHH--cCCeEEEEcC---HHHHHHHHH-hcCCCeEEEEEECCcHH
Confidence 1111100000 00 0000000 00111333333 2567888843 222223333 22 22333444566889
Q ss_pred HHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 136 EMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 136 ~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
++.+|+..| + ....+.+.+++...... .+. ....+++++|. +++++.+++.+.|..
T Consensus 153 ~l~~Rl~~R--~--~~~~~~i~~rl~~~~~~----~~~-~~~~d~vI~n~--~~e~~~~~l~~~i~~ 208 (231)
T 3lnc_A 153 ELRRRLCGR--R--ADDSEVVEARLKGAAFE----ISH-CEAYDYVIVNE--DIEETADRISNILRA 208 (231)
T ss_dssp HHHHC------------------CHHHHHHH----HTT-GGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--C--CCCHHHHHHHHHHHHHH----Hhh-hcCCeEEEECc--CHHHHHHHHHHHHHH
Confidence 999999877 3 23445555555443332 111 22334555544 799999999888754
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.07 E-value=4.8e-10 Score=79.88 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=84.6
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCc--eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM- 93 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 93 (209)
...++.+|+|.|+|||||||+++.|+..++.. +++.+++.... ......+...+... +.......+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~------~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ------QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH------HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchhh------hhHHHHHHHHHHHH
Confidence 34567899999999999999999999887543 67766654321 11100000000000 0011111111111
Q ss_pred -HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhhchhHH
Q 028388 94 -EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD-NVETIRKRFKVFLESSLPVV 171 (209)
Q Consensus 94 -~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (209)
....+..+++|+..... ....+.. . ..+...+++.++.+++..|...| ..+.. .++.... ..+...++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~ls~~~~~~v~~~R~~~r--~~~~lld~~~~~~----~~~~~~~l~ 148 (191)
T 1zp6_A 78 RYAKEGYFVILDGVVRPD-WLPAFTA-L-ARPLHYIVLRTTAAEAIERCLDR--GGDSLSDPLVVAD----LHSQFADLG 148 (191)
T ss_dssp HHHHTSCEEEECSCCCTT-TTHHHHT-T-CSCEEEEEEECCHHHHHHHHHTT--CTTSCCCHHHHHH----HHHHTTCCG
T ss_pred HHhccCCeEEEeccCcHH-HHHHHHh-c-CCCeEEEEecCCHHHHHHHHHhc--CCCccCCHHHHHH----HHHHHhccC
Confidence 11135667888754322 2222322 1 22335899999999999999988 33221 2332222 112222221
Q ss_pred HHHhhcCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388 172 QYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT 201 (209)
Q Consensus 172 ~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~ 201 (209)
. + .. +++++ +.+++++++.|.+.+.
T Consensus 149 ~-~---~~-~~i~t~~~~~~~~~~~i~~~l~ 174 (191)
T 1zp6_A 149 A-F---EH-HVLPVSGKDTDQALQSAINALQ 174 (191)
T ss_dssp G-G---GG-GEEECTTCCTTTTTTTTHHHHH
T ss_pred c-c---cc-cEEECCCCCHHHHHHHHHHHHH
Confidence 1 1 22 34554 4688888888877764
No 114
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.07 E-value=4.1e-10 Score=86.42 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHH--HHcCCchHHHHHHHHHcCCCCCHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAE--IKSGSENGTMIQNMIKEGKIVPSEVTIKL 88 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (209)
..+|.+|.|.|++||||||+++.|+..++ ..+++.|+++... ...... ....+.......+.+.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~-----~~~~g~P~~~D~~~l~~~ 163 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGL-----MKRKGFPESYDMPSLLRV 163 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTC-----GGGTTSGGGBCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHH-----HhhccCcccccHHHHHHH
Confidence 45688999999999999999999998875 4457776643211 000000 000111222333444444
Q ss_pred HHHHHHhc------------------------CCCeEEEeCCCCCHHHH-----HHHHHhcCCCCcEEEEEecCHHHHHH
Q 028388 89 LQKAMEES------------------------GNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEMER 139 (209)
Q Consensus 89 i~~~~~~~------------------------~~~~~i~dg~~~~~~~~-----~~~~~~~~~~~~~~i~L~~~~~~~~~ 139 (209)
+....... ....+|+||........ ..+.. ....+|++||+++|.+++.+
T Consensus 164 L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~-l~~~~D~~I~Vda~~d~~~~ 242 (321)
T 3tqc_A 164 LNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVF-VSDFFDFSLFVDAQAQVIQK 242 (321)
T ss_dssp HHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCC-GGGGCSEEEEEECCHHHHHH
T ss_pred HHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhh-hhhhcCeEEEEECCHHHHHH
Confidence 44433221 13566888853222110 00000 11236899999999999999
Q ss_pred HHhhc
Q 028388 140 RILNR 144 (209)
Q Consensus 140 R~~~r 144 (209)
|+..|
T Consensus 243 R~i~R 247 (321)
T 3tqc_A 243 WYIDR 247 (321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 115
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.04 E-value=2.4e-09 Score=80.88 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=93.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
..+.+|+|.|..||||||.++.|.+.++ +.++.... ....... . .. +.+....
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~----------Pt~eE~~----~-~y---------l~R~~~~ 139 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTK----------PTETERG----Q-WY---------FQRYVAT 139 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCS----------CCHHHHT----S-CT---------THHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCC----------cChHHHh----c-hH---------HHHHHHh
Confidence 4689999999999999999999999996 33443211 0011110 0 10 1122222
Q ss_pred c--CCCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028388 96 S--GNDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE-- 149 (209)
Q Consensus 96 ~--~~~~~i~dg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~-- 149 (209)
. .|..+|+|++..+. .+...|++. ....|++.|||++++++..+|+..| .....
T Consensus 140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~W 219 (304)
T 3czq_A 140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIW 219 (304)
T ss_dssp CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGG
T ss_pred cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCccccc
Confidence 2 48999999765441 112222111 2447899999999999999999887 22222
Q ss_pred CCcHHHHH--HHHHHHHhhchhHHHHHh-hcCcEEEEcCCCCh---HHHHHHHHHhcCcc
Q 028388 150 DDNVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPV---AEVFDAVKAVFTPK 203 (209)
Q Consensus 150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---ee~~~~i~~~i~~~ 203 (209)
.....++. +.+..|.+....+..... ....+++|+++.+. -.+.+.|.+.|...
T Consensus 220 k~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~ 279 (304)
T 3czq_A 220 KLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYD 279 (304)
T ss_dssp GCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhc
Confidence 11333333 233344444434433333 23479999997533 45556666666543
No 116
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.97 E-value=8.7e-10 Score=78.72 Aligned_cols=162 Identities=12% Similarity=0.232 Sum_probs=79.5
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHH---cCCc----hHHHHHHHHHcCCCCCHH---
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIK---SGSE----NGTMIQNMIKEGKIVPSE--- 83 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~--- 83 (209)
.++..++.+|+|+||+|||||||++.|.+.+.- ...+.....+.... .+.. ....+...+..+.++...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~ 92 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQ 92 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhh
Confidence 455567889999999999999999999987751 11111000000000 0000 011222222222211100
Q ss_pred -----HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHH
Q 028388 84 -----VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRK 158 (209)
Q Consensus 84 -----~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~ 158 (209)
.....++..+. .++.+|+|..+.... .+.. ....| ++||+..|.- .| ..+..+.+.+
T Consensus 93 ~n~YGt~~~~v~~~l~--~G~~vildid~qg~~---~~~~-~~~~~-~~Ifi~Pps~-------~~----~~e~~~~i~~ 154 (197)
T 3ney_A 93 GNMFGTKFETVHQIHK--QNKIAILDIEPQTLK---IVRT-AELSP-FIVFIAPTDQ-------GT----QTEALQQLQK 154 (197)
T ss_dssp TEEEEEEHHHHHHHHH--TTCEEEEECCGGGHH---HHCS-TTTCE-EEEEEEECCB-------SS----CCHHHHHHHH
T ss_pred ceecccchhhHHHHHh--cCCeEEEEECHHHHH---HHHh-cCCCc-eEEEEeCCCc-------cc----cchHHHHHHH
Confidence 11344555555 588999997543322 2222 22333 5777775531 12 1222333444
Q ss_pred HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
+.... ...+....+++++|. ++++.++++.+.|...
T Consensus 155 r~~~~-------~~~~~~~fd~vivNd--~l~~a~~~l~~ii~~~ 190 (197)
T 3ney_A 155 DSEAI-------RSQYAHYFDLSLVNN--GVDETLKKLQEAFDQA 190 (197)
T ss_dssp HHHHH-------HHHHGGGCSEEEEES--CHHHHHHHHHHHHHHC
T ss_pred HHHHH-------HHhhccCCCEEEECC--CHHHHHHHHHHHHHHc
Confidence 33211 111333345667766 5899999998887553
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.96 E-value=2.4e-09 Score=77.43 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=72.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHH--HHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRA--EIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (209)
..++.+|.|.|++|||||||++.|+..+. ..+++.++.... ......... ............+...+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~ 93 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLP-----RKGAPETFDFEGFQRLCH 93 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGG-----GTTSGGGBCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccc-----cCCCCchhhHHHHHHHHH
Confidence 35678999999999999999999999875 455665443211 100000000 000011122233333343
Q ss_pred HHHHh----------------------cC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--c
Q 028388 91 KAMEE----------------------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N 145 (209)
Q Consensus 91 ~~~~~----------------------~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~ 145 (209)
..... .. ...+|+||......+. .+.. .....|.+||++++.+++.+|+.+| .
T Consensus 94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~-~~~~-l~~~~d~~i~vd~~~~~~~~R~~~R~~~ 171 (208)
T 3c8u_A 94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAP-GWRD-LTAIWDVSIRLEVPMADLEARLVQRWLD 171 (208)
T ss_dssp HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCST-TGGG-GGGTCSEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCc-hhHH-HHHhcCEEEEEeCCHHHHHHHHHHHHHh
Confidence 33221 01 2567888743222110 1111 1234689999999999999999988 2
Q ss_pred CCCCCCcHHHHHHHHH
Q 028388 146 QGREDDNVETIRKRFK 161 (209)
Q Consensus 146 ~~~~~~~~~~~~~~~~ 161 (209)
.+. ..+.+.+++.
T Consensus 172 ~g~---t~~~~~~~~~ 184 (208)
T 3c8u_A 172 HGL---NHDAAVARAQ 184 (208)
T ss_dssp TTC---CHHHHHHHHH
T ss_pred cCC---CHHHHHHHHH
Confidence 233 4455555443
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.95 E-value=1.6e-08 Score=73.68 Aligned_cols=167 Identities=16% Similarity=0.243 Sum_probs=89.2
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCC--ceecHhHHHHHHHH---cCCc----hHHHHHHHHHc----------C
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIK---SGSE----NGTMIQNMIKE----------G 77 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~--~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~----------~ 77 (209)
-|.++.+++|.||+|||||||.+.|+..+.. ...+.....+.... .+.. ....+...... +
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 4567889999999999999999999987641 11111000000000 0000 00111111110 0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH
Q 028388 78 KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR 157 (209)
Q Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~ 157 (209)
..+.. ....+...+. .+..+|+| ........+.+ .......+|+..-+.+++.+|+..| + .+.++.+.
T Consensus 92 ~~yg~--~~~~v~~~l~--~G~illLD---LD~~~~~~i~~-~l~~~~tI~i~th~~~~l~~Rl~~r--G--~~~~e~i~ 159 (219)
T 1s96_A 92 NYYGT--SREAIEQVLA--TGVDVFLD---IDWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIA 159 (219)
T ss_dssp EEEEE--EHHHHHHHHT--TTCEEEEE---CCHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHH
T ss_pred ccCCC--CHHHHHHHHh--cCCeEEEE---ECHHHHHHHHH-HccCCEEEEEECCCHHHHHHHHHHc--C--CCCHHHHH
Confidence 11000 0223444444 37899999 45555555555 2333333555555788999999766 4 56778888
Q ss_pred HHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
+++....... . +......+++|. ++++.++++.+.|..
T Consensus 160 ~rl~~a~~e~----~-~~~~~d~~i~Nd--~l~~a~~~l~~ii~~ 197 (219)
T 1s96_A 160 KRMAQAVAEM----S-HYAEYDYLIVND--DFDTALTDLKTIIRA 197 (219)
T ss_dssp HHHHHHHHHH----T-TGGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----h-hccCCCEEEECc--CHHHHHHHHHHHHHH
Confidence 8776543321 1 122234555553 789999998888753
No 119
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.94 E-value=3.6e-09 Score=86.88 Aligned_cols=163 Identities=14% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHcCCchHH-HHHHHHHcCCCCCHHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQK 91 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ 91 (209)
.++.+|+|+|++||||||+++.|+..++ +.+++.+++... +.....+.. ....... .+....+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~r--------~i~~v~q~ 437 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNVR--------RIGFVASE 437 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHHH--------HHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHHH--------HHHHHHHH
Confidence 4678999999999999999999999985 335776554332 111111111 0000000 00111111
Q ss_pred HHHhcCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388 92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV 170 (209)
Q Consensus 92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
+.. .+..++..+............++ ......++|||++|.+++.+|..+. ...... ...+..+.....+
T Consensus 438 -l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~---l~~~~~---~~~i~~l~~~r~~- 508 (552)
T 3cr8_A 438 -ITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKG---LYAKAR---AGLIPEFTGVSDP- 508 (552)
T ss_dssp -HHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------CC-
T ss_pred -HHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcccc---cccccc---HhHHHHHHhcccc-
Confidence 221 24555555432112222222221 1112347999999999999996532 111100 0011112111111
Q ss_pred HHHHh-hcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388 171 VQYYE-AKGKVRKIDAA-KPVAEVFDAVKAVFTP 202 (209)
Q Consensus 171 ~~~~~-~~~~~~~id~~-~~~ee~~~~i~~~i~~ 202 (209)
++. .... +.+|++ .++++++++|...|..
T Consensus 509 --~e~P~~ad-l~Idt~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 509 --YEVPETPE-LAIDTTGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp --CCCCSSCS-EEECCSSCCHHHHHHHHHHHHHH
T ss_pred --ccCCCCCC-EEEECCCCCHHHHHHHHHHHHHh
Confidence 111 1223 567764 6899999999988743
No 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.94 E-value=4.1e-09 Score=74.49 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
++.+++|+||+||||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998763
No 121
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.90 E-value=2.1e-09 Score=82.59 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~ 55 (209)
++.+|+|.||+|||||||+..|+++++..+||.|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 567999999999999999999999999999998664
No 122
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.89 E-value=3.6e-09 Score=81.12 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL 55 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~ 55 (209)
.++.+|.|+|++||||||+++.|+..++ ..+++.|+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5678999999999999999999999876 455665543
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.88 E-value=2.4e-08 Score=71.62 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----------------------CceecHhHHHHHHHHcCCchHHHHHHHH-
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----------------------YTHLSAGDLLRAEIKSGSENGTMIQNMI- 74 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 74 (209)
+.+.+++|.||+||||||+++.|...+. +..++. +.++..+..+.... ..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~-~~~~~~i~~~~~l~-----~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTR-EMMQRDIAAGDFIE-----HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCH-HHHHHHHHHTCEEE-----EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccH-HHHHHHHHcCCCEe-----eee
Confidence 3467899999999999999999988653 111222 11222211110000 00
Q ss_pred HcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcH
Q 028388 75 KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNV 153 (209)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~~~~~~~~~ 153 (209)
-.++.+. .....+.+.+. .+..+++|-. ......... ....|. .++|.. +.+++.+|...| ..+..
T Consensus 76 ~~~n~~g--~~~~~i~~~~~--~~~~~~~~~~---~~g~~~~~~-~~~~~~-~~~l~~p~~~ilde~~~~~----d~~~e 142 (198)
T 1lvg_A 76 FSGNLYG--TSKEAVRAVQA--MNRICVLDVD---LQGVRSIKK-TDLCPI-YIFVQPPSLDVLEQRLRLR----NTETE 142 (198)
T ss_dssp ETTEEEE--EEHHHHHHHHH--TTCEEEEECC---HHHHHHHTT-SSCCCE-EEEEECSCHHHHHHHHHHH----TCSCH
T ss_pred ecCccCC--CCHHHHHHHHH--cCCcEEEECC---HHHHHHHHh-cCCCcE-EEEEeCCCHHHHHHHHHhc----CCCCH
Confidence 0000000 00223344443 2456666632 222222222 233443 355554 567889998877 33456
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
+.+.+++........... .....+.++++. +++++++++.+.|...
T Consensus 143 ~~i~~~l~~~~~~~~~a~--~~~~~D~iivnd--~le~a~~~l~~ii~~~ 188 (198)
T 1lvg_A 143 ESLAKRLAAARTDMESSK--EPGLFDLVIIND--DLDKAYATLKQALSEE 188 (198)
T ss_dssp HHHHHHHHHHHHHTTGGG--STTTCSEEEECS--SHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhh--ccCCceEEEECC--CHHHHHHHHHHHHHHH
Confidence 777777765543211000 112234555554 6899999999888654
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.85 E-value=9.7e-07 Score=61.63 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=83.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
+.-.++.+++|.|++||||||+++.+. .+...++. +.++..+........ +... ..+.........+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~-d~~~g~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~- 71 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHF--KPTEVISS-DFCRGLMSDDENDQT-VTGA-------AFDVLHYIVSKRLQ- 71 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEH-HHHHHHHCSSTTCGG-GHHH-------HHHHHHHHHHHHHH-
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHc--cCCeEEcc-HHHHHHhcCcccchh-hHHH-------HHHHHHHHHHHHHh-
Confidence 334567899999999999999999864 34556665 444544333211000 0000 00111112222222
Q ss_pred cCCCeEEEeCCCCCHHH---HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388 96 SGNDKFLIDGFPRNEEN---RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ 172 (209)
Q Consensus 96 ~~~~~~i~dg~~~~~~~---~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (209)
.+...++|..+..... +-.+.+ .....-.+++|+.|...+-.|...| .....+.+.+........+....+
T Consensus 72 -~g~~~~~~~~~~~s~g~~qrv~iAr-al~~~p~~lllDEPt~~Ld~~~~~R--~~~~~~~~vi~~~~~~l~~~l~~l-- 145 (171)
T 4gp7_A 72 -LGKLTVVDATNVQESARKPLIEMAK-DYHCFPVAVVFNLPEKVCQERNKNR--TDRQVEEYVIRKHTQQMKKSIKGL-- 145 (171)
T ss_dssp -TTCCEEEESCCCSHHHHHHHHHHHH-HTTCEEEEEEECCCHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHSTTH--
T ss_pred -CCCeEEEECCCCCHHHHHHHHHHHH-HcCCcEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHhhhhhhhH--
Confidence 3677788876544332 223333 3333335888999999999999988 333445555555444444443333
Q ss_pred HHhhcCcEEEEcCCCChHHH
Q 028388 173 YYEAKGKVRKIDAAKPVAEV 192 (209)
Q Consensus 173 ~~~~~~~~~~id~~~~~ee~ 192 (209)
.++...++.+.. +.+++
T Consensus 146 -~~~g~tvi~vtH--~~~~~ 162 (171)
T 4gp7_A 146 -QREGFRYVYILN--SPEEV 162 (171)
T ss_dssp -HHHTCSEEEEEC--SHHHH
T ss_pred -HhcCCcEEEEeC--CHHHh
Confidence 223224455544 44444
No 125
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.68 E-value=6.9e-08 Score=78.12 Aligned_cols=160 Identities=11% Similarity=0.126 Sum_probs=89.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
..+.+|+|.|..||||+|.++.|.+.++ +.++.... +..... .+ .. +.+....
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~----~~-~y---------l~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER----AQ-PY---------LWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH----TS-CT---------THHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh----cc-hH---------HHHHHHh
Confidence 4688999999999999999999999996 43443211 000000 00 11 1122222
Q ss_pred c--CCCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC-
Q 028388 96 S--GNDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRED- 150 (209)
Q Consensus 96 ~--~~~~~i~dg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~- 150 (209)
. .|..+|+|++..+. .+...|++. ....+.+.|||++++++..+|+..| ......
T Consensus 354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~W 433 (500)
T 3czp_A 354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRY 433 (500)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTS
T ss_pred CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence 2 38999999865441 122222221 4456889999999999999999998 321110
Q ss_pred -CcHHHHH--HHHHHHHhhchhHHHHHhhc-CcEEEEcCCCC---hHHHHHHHHHhcCc
Q 028388 151 -DNVETIR--KRFKVFLESSLPVVQYYEAK-GKVRKIDAAKP---VAEVFDAVKAVFTP 202 (209)
Q Consensus 151 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~id~~~~---~ee~~~~i~~~i~~ 202 (209)
..+.++. ++...|.+....++...... .++++|+++.. --.+.+.|.+.|..
T Consensus 434 k~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~ 492 (500)
T 3czp_A 434 KITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA 492 (500)
T ss_dssp CCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence 0111111 12223433333344433322 37999999741 23444555544443
No 126
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.66 E-value=7.3e-08 Score=77.98 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE 95 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (209)
..+.+|+|.|..||||+|.++.|.+.++- .++.... +...... . .. +.+....
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E~~----~-~y---------l~R~~~~ 96 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEELE----R-PP---------QWRFWRR 96 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHHHT----S-CT---------THHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhcc----C-Ch---------hhhHHHh
Confidence 57899999999999999999999999963 3333211 0000000 0 00 1112222
Q ss_pred c--CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028388 96 S--GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE-- 149 (209)
Q Consensus 96 ~--~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~-- 149 (209)
. .|..+|+|++..+ ..+...|+.. ....+.+.|||++++++..+|+..| .....
T Consensus 97 lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~W 176 (500)
T 3czp_A 97 LPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSW 176 (500)
T ss_dssp CCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----------
T ss_pred CCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence 2 4888999975432 1122222221 5667889999999999999999998 21111
Q ss_pred -----C-CcHHHHHHHHHHHHhhchhHHHHHhh-cCcEEEEcCCC---ChHHHHHHHHHhcC
Q 028388 150 -----D-DNVETIRKRFKVFLESSLPVVQYYEA-KGKVRKIDAAK---PVAEVFDAVKAVFT 201 (209)
Q Consensus 150 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~---~~ee~~~~i~~~i~ 201 (209)
+ ...+ ++..|.+....++..... ..++++|+++. ....+.+.|.+.|.
T Consensus 177 k~s~~D~~~~~----~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~ 234 (500)
T 3czp_A 177 KLSPLDWKQSE----VYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQ 234 (500)
T ss_dssp --CSSCTTSHH----HHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH----hHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHH
Confidence 1 1122 222333333333332332 23799999974 12344455544443
No 127
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.57 E-value=7.6e-07 Score=66.42 Aligned_cols=144 Identities=10% Similarity=0.126 Sum_probs=85.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
.+.+|++.|..||||++.++.|.+.++ +.+++... ....+ .. ...+.+.....
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~----------Pt~eE----~~----------~~ylwR~~~~l 129 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA----------PTDEE----KS----------HDFLWRIEKQV 129 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS----------CCHHH----HT----------SCTTHHHHTTC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC----------CChhh----hc----------CCHHHHHHHhC
Confidence 588999999999999999999999996 33333211 00000 00 01122233232
Q ss_pred --CCCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC--
Q 028388 97 --GNDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRED-- 150 (209)
Q Consensus 97 --~~~~~i~dg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~-- 150 (209)
.|..+|+|++.++. .++..|++. ......+-+||+++.++..+|+..| ......
T Consensus 130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK 209 (289)
T 3rhf_A 130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWK 209 (289)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGG
T ss_pred CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCccccc
Confidence 38999999765441 223333332 3444556899999999999999998 322221
Q ss_pred CcHHHHHH--HHHHHHhhchhHHHHHhh-cCcEEEEcCCC
Q 028388 151 DNVETIRK--RFKVFLESSLPVVQYYEA-KGKVRKIDAAK 187 (209)
Q Consensus 151 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~id~~~ 187 (209)
-.+.++.+ +...|.+....++..... ..++++|+++.
T Consensus 210 ~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~add 249 (289)
T 3rhf_A 210 YSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANK 249 (289)
T ss_dssp CCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC
Confidence 23344443 234455544444444432 25899999973
No 128
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.55 E-value=2.7e-08 Score=76.17 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~ 55 (209)
+++|+|+||+||||||++..|+++++..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 46899999999999999999999999999998654
No 129
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.50 E-value=6.5e-08 Score=74.52 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~ 55 (209)
++|+|+||+||||||+|..|++.++..+++.|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 6899999999999999999999999999998775
No 130
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.49 E-value=8.2e-08 Score=72.84 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
+.|.+|+|+||+|||||||+..|+++++..+++.|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 346799999999999999999999999988888654
No 131
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.49 E-value=3.6e-07 Score=69.37 Aligned_cols=163 Identities=16% Similarity=0.213 Sum_probs=85.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc-----hHHHHHHHHHcCCCCCHH-----
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPSE----- 83 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~----- 83 (209)
+..+.+|+|+|| ||+||++.|.+.+.- ..++.....|....+ +.. ..+.+...+..+.++...
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~ 178 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH 178 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence 456678999998 799999999987631 112221122211110 000 122333333333332111
Q ss_pred ---HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388 84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF 160 (209)
Q Consensus 84 ---~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~ 160 (209)
.....++..+. .+..+|+|..+.... .+.. ....| ++||+.+|.-..++++.+| + ..+.+.+++
T Consensus 179 ~YGt~~~~V~~~~~--~G~~vildid~~g~~---~l~~-~~~~p-i~IfI~pps~~~L~~L~~R--~----t~~~i~~rl 245 (295)
T 1kjw_A 179 LYGTSVQSVREVAE--QGKHCILDVSANAVR---RLQA-AHLHP-IAIFIRPRSLENVLEINKR--I----TEEQARKAF 245 (295)
T ss_dssp EEEEEHHHHHHHHH--TTCEEEECCCTTHHH---HHHH-TTCCC-EEEEECCSSHHHHHHHCTT--S----CHHHHHHHH
T ss_pred EeeeeHHHHHHHHh--cCCeEEEEeCHHHHH---HHHh-cccCC-eEEEEECCCHHHHHHHHhc--C----CHHHHHHHH
Confidence 11445666665 488999996543222 2333 33445 8899987754444446655 3 224456665
Q ss_pred HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...... ...+...-..++ .++ ++++.++++...|..
T Consensus 246 ~~a~~~----e~~~~~~fd~vi-vNd-~le~a~~~l~~ii~~ 281 (295)
T 1kjw_A 246 DRATKL----EQEFTECFSAIV-EGD-SFEEIYHKVKRVIED 281 (295)
T ss_dssp HHHHHH----HHHHGGGCSEEE-CCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHhccccCeEEE-ECc-CHHHHHHHHHHHHHh
Confidence 554221 111222334444 444 799999999888754
No 132
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.48 E-value=7e-08 Score=73.32 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL 55 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~ 55 (209)
++++|+|.||+|||||||+..|++.++..+|+.|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 467899999999999999999999999888876543
No 133
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.38 E-value=3.4e-07 Score=67.42 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK 61 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~ 61 (209)
++|.|+|++||||||+++.|++++|+++++.++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5899999999999999999999999999998887776643
No 134
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.29 E-value=4e-07 Score=71.54 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
+++|+|.||+|||||||+..|++.++..+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4589999999999999999999999998888755
No 135
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.28 E-value=6.1e-07 Score=68.20 Aligned_cols=38 Identities=37% Similarity=0.732 Sum_probs=30.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL 55 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~ 55 (209)
...|..+++.||||+|||++|+.|++.++.++ ++.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 34567899999999999999999999998655 444444
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.21 E-value=1.7e-06 Score=60.84 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.7
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRAE 59 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~~~ 59 (209)
....+..++|.|+||+||||+++.++..+ | ..+++..++....
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 33457789999999999999999999877 3 3556666655443
No 137
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.21 E-value=7.4e-07 Score=72.42 Aligned_cols=36 Identities=6% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-------ceecHhH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGD 54 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-------~~i~~~~ 54 (209)
.++++|+|+|++||||||+++.|+++|+. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35689999999999999999999999986 5676655
No 138
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.2e-06 Score=69.85 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.0
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+..+.|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus 209 ~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 209 DMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3344557789999999999999999999999977654
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.18 E-value=1.3e-06 Score=66.19 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=32.1
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------Ccee-cHhHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHL-SAGDLL 56 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i-~~~~~~ 56 (209)
...+|.+|.|.|++||||||+++.|+..++ ...+ +.|+++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 345788999999999999999999998885 2344 776654
No 140
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.3e-06 Score=69.44 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=30.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+....|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 334556789999999999999999999999977655
No 141
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.2e-06 Score=69.04 Aligned_cols=38 Identities=21% Similarity=0.463 Sum_probs=31.1
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..+....|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus 175 ~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 175 ESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp HHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred HhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 33334456779999999999999999999999977755
No 142
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.4e-06 Score=69.43 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=30.9
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+...-|+-|++.||||+|||++|+.||.+++++++.
T Consensus 209 ~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 209 RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3334456789999999999999999999999977654
No 143
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.16 E-value=4.1e-05 Score=57.92 Aligned_cols=163 Identities=10% Similarity=0.155 Sum_probs=84.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCc-----hHHHHHHHHHcCCCCCHH-----
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPSE----- 83 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~----- 83 (209)
...++.|+|+|| ||+|+.+.|.+.+.-.+ .+.....|....+ +.. ..+.+...+..+.++...
T Consensus 97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn 173 (292)
T 3tvt_A 97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN 173 (292)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence 355667888988 59999999998874221 2211111111000 000 112233333333222111
Q ss_pred ---HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHH
Q 028388 84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKR 159 (209)
Q Consensus 84 ---~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~ 159 (209)
.....+.+.+. .++.+|+|-.+ .-...+.. ....| ++||+..|. +++.+|+..| ..+..+.+..+
T Consensus 174 ~YGT~~~~V~~~~~--~gk~viLdid~---qg~~~lk~-~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~r 242 (292)
T 3tvt_A 174 LYGTSVASVREVAE--KGKHCILDVSG---NAIKRLQV-AQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYER 242 (292)
T ss_dssp EEEEEHHHHHHHHH--HTCEEEECCCT---HHHHHHHH-TTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHHH
T ss_pred eeEEehHHHHHHHH--cCCcEEEeccc---hhhhhccc-ccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHHH
Confidence 11455666665 37899999543 33333444 44455 678887754 5566655543 34444555544
Q ss_pred HHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
..... ..+.+.-+.+++|. ++++.++++.+.|.+.
T Consensus 243 ~~k~e-------~e~~~~fD~vIvNd--dle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 243 AIKME-------QEFGEYFTGVVQGD--TIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp HHHHH-------HHHTTTCSEEECCS--SHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HhhhhhCCEEEECc--CHHHHHHHHHHHHHHh
Confidence 33221 12233334545544 7899999999888553
No 144
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.15 E-value=1.3e-06 Score=62.02 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG 53 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~ 53 (209)
.+..|+|+|++||||||+|..|+++.+ .+++.|
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 467899999999999999999999877 676653
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.13 E-value=2.2e-06 Score=63.68 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.|.-++|.|+||+||||+++.|+..++.+++.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence 35569999999999999999999999865544
No 146
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.12 E-value=3.3e-05 Score=65.73 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=88.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc-----hHHHHHHHHHcCCCCCH------
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPS------ 82 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~------ 82 (209)
...++.|+|+|| ||+||.+.|.+.+.- ..++.....|....+ +.. ..+.+...+..+.++..
T Consensus 528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~ 604 (721)
T 2xkx_A 528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH 604 (721)
T ss_pred CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence 345678999999 499999999987741 223333334432111 111 12334444444443321
Q ss_pred --HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388 83 --EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF 160 (209)
Q Consensus 83 --~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~ 160 (209)
-.....++..+. .++.+|+|..+ .-...+.. ....| ++||+..+.-..++++..| +. .+.+.+++
T Consensus 605 ~YGt~~~~v~~~~~--~g~~~ildi~~---~~~~~l~~-~~~~p-~~ifi~pps~~~L~~l~~R--~t----~~~~~~rl 671 (721)
T 2xkx_A 605 LYGTSVQSVREVAE--QGKHCILDVSA---NAVRRLQA-AHLHP-IAIFIRPRSLENVLEINKR--IT----EEQARKAF 671 (721)
T ss_pred cceeeHHHHHHHHH--CCCcEEEeCCH---HHHHHHHh-cccCC-EEEEEeCCcHHHHHHHhcc--CC----HHHHHHHH
Confidence 112555666665 48899999642 22223332 23345 7899997765555557666 32 24455555
Q ss_pred HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388 161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203 (209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~ 203 (209)
....+. ...+.....++++ ++ ++++.++++...|...
T Consensus 672 ~~a~~~----e~~~~~~fd~vi~-Nd-~l~~a~~~l~~~i~~~ 708 (721)
T 2xkx_A 672 DRATKL----EQEFTECFSAIVE-GD-SFEEIYHKVKRVIEDL 708 (721)
T ss_pred HHHHHH----HHhccccCcEEEE-Cc-CHHHHHHHHHHHHHhc
Confidence 544221 1111222234444 44 7999999999888653
No 147
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.12 E-value=2.5e-06 Score=63.42 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..+.-++|.|+||+||||+|+.+++.++.+++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 456679999999999999999999999876653
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.8e-06 Score=68.89 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=31.7
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..+...-|+-|++.||||+|||++|+.||.+++.+++.
T Consensus 236 ~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 236 ATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp HHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred HHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 33444567789999999999999999999999977755
No 149
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.09 E-value=2.4e-06 Score=65.13 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCcee--cHhHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAE 59 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i--~~~~~~~~~ 59 (209)
..+..++|.|+||+||||+|+.|+..++..++ +..++....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 45678999999999999999999999986654 455555443
No 150
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.09 E-value=2.5e-06 Score=64.34 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..+..++|.|+||+||||+++.+++.++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 456779999999999999999999999876654
No 151
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.1e-06 Score=67.00 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=31.1
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+...-|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus 210 ~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 210 EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 3444556789999999999999999999999977755
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.05 E-value=2.7e-06 Score=59.79 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+.++|.|++||||||+++.|+..++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998863
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.03 E-value=4.4e-06 Score=63.40 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+..++|.|+||+||||+|+.+++.++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 35689999999999999999999999866543
No 154
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.02 E-value=4.3e-06 Score=62.70 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
...+..++|.|+||+|||++|+.+++.++.+++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34566899999999999999999999999776543
No 155
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.01 E-value=7.7e-07 Score=68.84 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=29.5
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
.+.......|+|.|+|||||||+++.|++.+++.+
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34444556799999999999999999999998777
No 156
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.01 E-value=3.1e-06 Score=61.43 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=24.2
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++...++.+++|.||+||||||+++.|+..+
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455677899999999999999999999866
No 157
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.00 E-value=4.4e-06 Score=59.60 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+...++|.||||+||||+|..|++.++..+++
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 34579999999999999999999998755544
No 158
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.99 E-value=3.5e-06 Score=67.31 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
.|..|++.||||+||||+++.|++.++.+++..
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 356799999999999999999999999777654
No 159
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.99 E-value=5.7e-06 Score=63.36 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..++.+|.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4668899999999999999999999876
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.97 E-value=6.8e-06 Score=61.80 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
.-++|.||||+||||+++.|+..++...+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 33999999999999999999999875444
No 161
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.97 E-value=6.2e-06 Score=63.43 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+.-++|.||||+|||++|+.+++.++..++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 4679999999999999999999999876654
No 162
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.96 E-value=1.1e-05 Score=57.58 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE 59 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~ 59 (209)
+..++|.|+||+||||+++.++..+ + +.+++..++....
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 3789999999999999999999877 3 3446666655443
No 163
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.96 E-value=4.2e-06 Score=65.48 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
.+..++|.||||+|||++|+.|++.++.+++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 345689999999999999999999998777653
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.96 E-value=6.7e-06 Score=64.49 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=30.2
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
....+.+++|.|||||||||+++.|+..++..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 44567899999999999999999999998876655
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.94 E-value=7.1e-06 Score=57.63 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...+..++|.|+||+||||+++.+++.+
T Consensus 40 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 40 RRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456778999999999999999999987
No 166
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.93 E-value=7.4e-06 Score=62.33 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
.+..++|.|+||+|||++|+.+++.++.+++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999986554
No 167
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.92 E-value=6.9e-06 Score=63.52 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH 49 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~ 49 (209)
+..++|.||||+||||+++.|+..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 46799999999999999999999997543
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.91 E-value=7.7e-06 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+..++|.|+||+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446678999999999999999999987
No 169
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.90 E-value=8.7e-06 Score=60.35 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.-++|.|+||+||||+++.|+..++...+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 349999999999999999999988754443
No 170
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.90 E-value=8.8e-06 Score=62.61 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCcee
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHL 50 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i 50 (209)
+.-|+|.||||+|||++|+.+++.+ +..++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 4679999999999999999999998 55443
No 171
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.90 E-value=9e-06 Score=56.45 Aligned_cols=25 Identities=32% Similarity=0.166 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+++.|.|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 172
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.88 E-value=3.3e-06 Score=63.09 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
|.-++|.|+||+||||+|+.|++.++.+++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4458899999999999999999999876654
No 173
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.88 E-value=8.7e-06 Score=69.58 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=31.9
Q ss_pred cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 13 ~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+..+...-|.-|++.||||+|||++|+.++.++|..++.
T Consensus 230 f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~ 268 (806)
T 3cf2_A 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp GTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 344444557789999999999999999999999976654
No 174
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.87 E-value=8.1e-06 Score=64.11 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+..++|.|+||+||||+|+.|++.++.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568999999999999999999999866654
No 175
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.87 E-value=1e-05 Score=63.16 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+.-|+|.||||+|||++|+.+++.++..++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3468999999999999999999999976654
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.87 E-value=1.7e-05 Score=60.92 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRA 58 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~ 58 (209)
.+..++|.|+||+||||+++.+++.+ + +.+++..++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 35679999999999999999999987 4 455666665443
No 177
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.86 E-value=1.2e-05 Score=61.29 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+..++|.|+||+|||++|+.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999988
No 178
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.85 E-value=1.1e-05 Score=55.01 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
....++|.|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999877
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.85 E-value=1.3e-05 Score=62.57 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..+..|+|.|+||+||||+|+.+++.++..++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 346689999999999999999999999876643
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.85 E-value=1.1e-05 Score=58.90 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+..++|.|+||+||||+++.+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998874
No 181
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.85 E-value=1.1e-05 Score=58.03 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=24.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
....++.+++|.|++||||||+++.|+..+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445678999999999999999999998764
No 182
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.84 E-value=1.6e-05 Score=64.24 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
-|.-++|.||||+||||+++.++..++.+++.
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 34559999999999999999999999876654
No 183
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.84 E-value=1.3e-05 Score=55.07 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=26.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+....+.+++|.|+.|||||||.+.|+..+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334567799999999999999999999877
No 184
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.82 E-value=0.00044 Score=52.47 Aligned_cols=145 Identities=11% Similarity=0.124 Sum_probs=75.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES 96 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (209)
...++-|+|+|| ||+|+.+.|.+.+.-.+ ++.. .-+. +..+.+++ ...++..+.
T Consensus 142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~r~---------------i~~~~fis----~~~V~~vl~-- 196 (308)
T 3kfv_A 142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAET-VSRT---------------DSPSKIIK----LDTVRVIAE-- 196 (308)
T ss_dssp CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCC-C-----------------------CCC----HHHHHHHHH--
T ss_pred cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccc-cccc---------------ccCCCeec----HHHHHHHHH--
Confidence 445666899999 79999999988775222 1110 0000 22334443 344555555
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388 97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175 (209)
Q Consensus 97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (209)
.++.+|+|= ...-...+.. ....| ++||+..|. +++.+| .+| +. .+..+.+.+++....+ +...+.
T Consensus 197 ~Gk~~ILDI---d~QGa~~lk~-~~~~p-i~IFI~PPS~eeL~~r-r~R--~~-~esee~~~r~~~aa~e----iE~~~~ 263 (308)
T 3kfv_A 197 KDKHALLDV---TPSAIERLNY-VQYYP-IVVFFIPESRPALKAL-RQW--LA-PASRRSTRRLYAQAQK----LRKHSS 263 (308)
T ss_dssp TTCEEEECC---CHHHHHHHHH-TTCCC-EEEEEEESCHHHHHHH-HHH--HS-TTCCCCHHHHHHHHHH----HHHHHG
T ss_pred CCCcEEEEE---CHHHHHHHHh-cCCCC-EEEEEeCCCHHHHHHH-Hhc--CC-CCCHHHHHHHHHHHHH----HHHhhh
Confidence 589999993 3343344444 45556 566666654 556655 444 11 1111223333222211 112233
Q ss_pred hcCcEEE-EcCCCChHHHHHHHHHhcCc
Q 028388 176 AKGKVRK-IDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 176 ~~~~~~~-id~~~~~ee~~~~i~~~i~~ 202 (209)
..-+.++ +|. ++++.++++...|..
T Consensus 264 ~~FD~vI~VND--dle~A~~~L~~iI~~ 289 (308)
T 3kfv_A 264 HLFTATIPLNG--TSDTWYQELKAIIRE 289 (308)
T ss_dssp GGCSEEEEECS--SSTHHHHHHHHHHHH
T ss_pred ccCcEEEEcCC--CHHHHHHHHHHHHHH
Confidence 3344555 665 567788888877754
No 185
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.82 E-value=1.5e-05 Score=59.98 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
-++|.|+||+||||+++.|+..++...+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 39999999999999999999988754443
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.81 E-value=1.5e-05 Score=61.48 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+..++|.|+||+||||+|+.+++.++.+++.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 34568999999999999999999999876654
No 187
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.81 E-value=1.7e-05 Score=55.47 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+++|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=1.6e-05 Score=65.07 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.+..++|+||||+||||+|+.+++.+++.++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 35689999999999999999999999977654
No 189
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.78 E-value=1.9e-05 Score=63.73 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC--Cceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~ 51 (209)
|.-+++.||||+|||++|+.+++.++ .+++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 45799999999999999999999998 55543
No 190
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.77 E-value=2.3e-05 Score=59.73 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=26.2
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+....+.+++|.|++||||||+++.|+..+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 334568899999999999999999999876
No 191
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.77 E-value=2.2e-05 Score=59.83 Aligned_cols=28 Identities=36% Similarity=0.738 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...|.+|+|+|++||||||++..|+..+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4567899999999999999999999876
No 192
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.76 E-value=1.8e-05 Score=60.25 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=28.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
+.-+++.+++|.|++|||||||++.|+..+...++
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 44567789999999999999999999988754443
No 193
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.76 E-value=1.3e-05 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
+++|+|++||||||+|..|+.. +.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence 3799999999999999999977 643
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.75 E-value=2.4e-05 Score=61.72 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+.-++|.|+||+|||++|+.+++.++..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 5689999999999999999999999876654
No 195
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.75 E-value=2e-05 Score=57.36 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+..++|.|+||+||||+++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 458999999999999999999998853
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.74 E-value=2.4e-05 Score=59.60 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.+++|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999776
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.73 E-value=1.9e-05 Score=53.45 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-|+|.|+||+|||++|+.|.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999998865
No 198
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.73 E-value=2.7e-05 Score=59.98 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+|.+++|.|++||||||+++.|+..+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999999876
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.72 E-value=2e-05 Score=63.39 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
.++..++|.|+||+||||+++.|++.++..++.
T Consensus 48 ~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 445679999999999999999999999866554
No 200
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.70 E-value=3.3e-05 Score=60.14 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=26.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+...+|.+++|.|++||||||+++.|+..+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 344568899999999999999999999876
No 201
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.70 E-value=3.1e-05 Score=57.72 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.....+++|+||+||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4556799999999999999999998765
No 202
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.69 E-value=1.7e-05 Score=58.18 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=26.1
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-+++|.||+|||||||.+.|+-.+
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445677899999999999999999998655
No 203
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.69 E-value=3.6e-05 Score=60.36 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999987
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.69 E-value=2.8e-05 Score=62.51 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCce--ecHhHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTH--LSAGDLLRA 58 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~--i~~~~~~~~ 58 (209)
+.-|+|.||||+|||++|+.++..+ +..+ ++..++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 4679999999999999999999998 5544 455555443
No 205
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.69 E-value=2.7e-05 Score=60.93 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...+..++|.|+||+||||+++.+++.+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3557789999999999999999999988
No 206
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.68 E-value=2.3e-05 Score=56.27 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++..++|.|+||+||||+++.+++.+
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34459999999999999999999876
No 207
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.68 E-value=2.7e-05 Score=60.75 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 358999999999999999999999974
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.68 E-value=2.5e-05 Score=57.48 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~ 42 (209)
.++.+++|.||+||||||+++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 457799999999999999999987
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.68 E-value=3.4e-05 Score=66.44 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=31.0
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
++....+..|+|.|+||+||||+++.|+..++..++..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 34445677899999999999999999999998765543
No 210
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.67 E-value=1.6e-05 Score=60.81 Aligned_cols=30 Identities=7% Similarity=0.216 Sum_probs=27.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+...+|..++|.||||+|||++++.+++.+
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999988
No 211
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=2.8e-05 Score=55.06 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999877
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.67 E-value=3.4e-05 Score=58.73 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCe-EEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPT-VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~-~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+|. .++|.|+||+||||+|+.|++.+
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 344 79999999999999999999987
No 213
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.67 E-value=3.2e-05 Score=59.35 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
.|..+++.|+||+||||+++.+++.++..++..
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456889999999999999999999998666543
No 214
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.66 E-value=3.7e-05 Score=60.10 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999987
No 215
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.66 E-value=3.9e-05 Score=61.95 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=26.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+...++.+|+|.|++||||||+++.|+..+
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 445678899999999999999999999876
No 216
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.66 E-value=0.00072 Score=54.38 Aligned_cols=151 Identities=9% Similarity=0.075 Sum_probs=78.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+..++.|+|+||+|+| |++.|.+.+.-.+.+. ..| . ..+...+. +..+. ....++..+. .
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~--~TR-p-R~gE~dG~-------~Y~FT----s~~~V~~vl~--~ 280 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIA--KSE-P-RDAGTDQR-------SSGII----RLHTIKQIID--Q 280 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC--CCB-C------------------CBC----CHHHHHHHHT--T
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceeee--cCC-C-CCcccccc-------cCCcc----cHHHHHHHHH--C
Confidence 4567889999999999 8888887765333332 112 1 11111111 01122 2455666665 5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (209)
++.+|+|= ..+-...+.. ....| ++||+..|.-..++++.+| .. .+..+.+.+++....+ +...|...
T Consensus 281 Gk~~iLdI---d~qg~~~l~~-~~~~p-~~IFI~PPS~e~L~~~~~r--l~-~~see~~~r~~~~a~~----~e~~~~~~ 348 (468)
T 3shw_A 281 DKHALLDV---TPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTMRMR--LC-PESRKSARKLYERSHK----LRKNNHHL 348 (468)
T ss_dssp TCEEEECC---CHHHHHHHHH-TTCCC-EEEEEECSCHHHHHHHHHH--HC-TTCCCCHHHHHHHHHH----HHHHHGGG
T ss_pred CCeEEEEe---CHHHHHHHHh-cCCCC-EEEEEeCcCHHHHHHHHhc--cC-CCCHHHHHHHHHHHHH----HHHhhhcc
Confidence 89999994 3444444544 45556 6778777665444433444 11 1112233333333211 12223444
Q ss_pred CcEEEEcCCCCh-HHHHHHHHHhcCc
Q 028388 178 GKVRKIDAAKPV-AEVFDAVKAVFTP 202 (209)
Q Consensus 178 ~~~~~id~~~~~-ee~~~~i~~~i~~ 202 (209)
-+.+++|. ++ ++.++++...|..
T Consensus 349 fD~vIvNd--dl~d~a~~~L~~ii~~ 372 (468)
T 3shw_A 349 FTTTINLN--SMNDGWYGALKEAIQQ 372 (468)
T ss_dssp CSEEEECB--TTBCHHHHHHHHHHHH
T ss_pred CCEEEECC--CcHHHHHHHHHHHHHH
Confidence 45666665 35 4677777777644
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.66 E-value=3.3e-05 Score=62.72 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..+.-++|.|+||+|||++|+.+++.++.+++.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 268 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 446679999999999999999999999866654
No 218
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.66 E-value=2.8e-05 Score=59.62 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
.+..++|.|+||+||||+|+.+++.++.+++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3456899999999999999999999986654
No 219
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.65 E-value=3e-05 Score=56.35 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
....++.|.|++||||||+++.|+-.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998743
No 220
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.65 E-value=2.9e-05 Score=53.75 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
...-++|.|++|+||||+|..|.+ .|+.+++-
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaD 46 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVCD 46 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEES
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecC
Confidence 346799999999999999999987 47776654
No 221
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.65 E-value=4e-05 Score=63.15 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
++..++|.||||+||||+++.|+..++..++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4678999999999999999999999975543
No 222
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.64 E-value=4e-05 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+++++++|+|||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999997776655
No 223
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.63 E-value=6e-05 Score=61.27 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
|.-++|.||||+||||+++.|+..++.+++.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4459999999999999999999998755543
No 224
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.62 E-value=2.7e-05 Score=57.26 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=26.1
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+.+++|.|++|||||||.+.|+..+
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444577899999999999999999998655
No 225
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.61 E-value=2.1e-05 Score=57.27 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=25.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334567799999999999999999998655
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.61 E-value=4e-05 Score=55.24 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~ 52 (209)
..+.+++|.|+|||||||++..|+...+ ..+++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 4567999999999999999999987433 334443
No 227
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.61 E-value=4.6e-05 Score=55.34 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.+++|.|+|||||||+++.|+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998654
No 228
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.60 E-value=0.00028 Score=55.62 Aligned_cols=150 Identities=9% Similarity=0.082 Sum_probs=79.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG 97 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (209)
+..++.|+|+||+| +||++.|.+.+.-.+.+. .+.. ..+...+. +..+++ ...++..+. .
T Consensus 229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~p-R~gE~dG~-------~Y~Fv~----~~~V~~~~~--~ 288 (391)
T 3tsz_A 229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEP-RDAGTDQR-------SSGIIR----LHTIKQIID--Q 288 (391)
T ss_dssp CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCC-CCSSSCCC---------CCCC----HHHHHHHHT--T
T ss_pred CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCC-CCcccCCc-------cCCcCc----HHHHHHHHH--c
Confidence 35678899999998 899999988775434432 1111 01111110 011222 455666655 5
Q ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388 98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176 (209)
Q Consensus 98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (209)
++.+|+|= ...-...+.. ....| ++||+..|. +++.+| .+| ... +..+.+.+++....+ +...|..
T Consensus 289 Gk~~iLdI---d~qg~~~l~~-~~~~p-~~IFI~PPS~~~L~~~-~~r--~~~-~s~e~~~~~~~~a~~----~e~~~~~ 355 (391)
T 3tsz_A 289 DKHALLDV---TPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTM-RMR--LCP-ESRKSARKLYERSHK----LRKNNHH 355 (391)
T ss_dssp TCEEEECC---CHHHHHHHHH-TTCCC-EEEEEECCCHHHHHHH-HHH--HCS-SCCCCHHHHHHHHHH----HHHHHGG
T ss_pred CCEEEEEe---CHHHHHHHHh-CCCCC-EEEEEeCcCHHHHHHH-Hhc--CCC-CCHHHHHHHHHHHHH----HHHhccc
Confidence 89999994 3444444544 45556 677777765 555554 444 111 122233333333211 2222334
Q ss_pred cCcEEEEcCCCChH-HHHHHHHHhcCc
Q 028388 177 KGKVRKIDAAKPVA-EVFDAVKAVFTP 202 (209)
Q Consensus 177 ~~~~~~id~~~~~e-e~~~~i~~~i~~ 202 (209)
.-+.+++|. +++ ..++++.+.|..
T Consensus 356 ~fd~vivNd--~l~~~a~~~l~~ii~~ 380 (391)
T 3tsz_A 356 LFTTTINLN--SMNDGWYGALKEAIQQ 380 (391)
T ss_dssp GCSEEEECC--TTCCHHHHHHHHHHHH
T ss_pred cCcEEEECC--CcHHHHHHHHHHHHHH
Confidence 445666766 354 577777776654
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.59 E-value=4.9e-05 Score=57.71 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.++.+|+|.|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999765
No 230
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.59 E-value=7.4e-05 Score=59.96 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----C--CceecHhHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRA 58 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l-----~--~~~i~~~~~~~~ 58 (209)
+..++|.|+||+||||+++.++..+ + +.+++..++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~ 174 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 5679999999999999999999877 4 355666665443
No 231
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.57 E-value=3.3e-05 Score=57.65 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=26.1
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445677899999999999999999998655
No 232
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.57 E-value=3.5e-05 Score=56.87 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=26.2
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445677899999999999999999998655
No 233
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.57 E-value=4.8e-05 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+++++|+|+||||||++|..+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999988643
No 234
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.57 E-value=3.9e-05 Score=56.47 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.. -+++|.|++|||||||.+.|+-.+
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 44456 789999999999999999998655
No 235
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.57 E-value=4.4e-05 Score=53.67 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=21.4
Q ss_pred CCccccCcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
||-.-++|...+..... .+...|+|.|.+|||||||.+.|..
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 1 MGHHHHHHGSLVPRGSR-SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -------------------CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccccccccccCCCCC-CceEEEEEECCCCCCHHHHHHHHHc
Confidence 56666666665555553 3457799999999999999999874
No 236
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.56 E-value=2.2e-05 Score=54.71 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.++.|.|++||||||+++.|...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999998763
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.56 E-value=5.3e-05 Score=60.41 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+|.+|+++|++||||||++..|+..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999999777
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.56 E-value=7.9e-05 Score=56.92 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----C--ceecHhHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG----Y--THLSAGDLLRAE 59 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~----~--~~i~~~~~~~~~ 59 (209)
+..++|.|+||+|||++++.++..+. . .+++..+++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 56799999999999999999998654 3 346666665544
No 239
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=5.3e-05 Score=58.65 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
..++|.|+||+||||+++.+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4489999999999999999998864
No 240
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.56 E-value=7e-05 Score=57.94 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+...++.++.|.|+|||||||+.+.|...+
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678899999999999999999998765
No 241
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.56 E-value=2.8e-05 Score=58.42 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++-++.|.||+|||||||.+.|+-.+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344567899999999999999999998655
No 242
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.55 E-value=6.6e-05 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.++|.|+||+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999988
No 243
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.55 E-value=4.6e-05 Score=53.71 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
......|+|.|.+|+|||||.+.|..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34455799999999999999999875
No 244
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.55 E-value=4.8e-05 Score=53.49 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=23.7
Q ss_pred CCccccCcchhhcccccC-CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 1 MGTVVETPVKEADATVTV-KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
||.--+-|.+.+...-.. .....|+|.|.+|+|||||.+.|...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 566666666655544333 23467999999999999999998753
No 245
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.55 E-value=3e-05 Score=57.32 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++.+++|.|++|||||||.+.|+-.+
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567899999999999999999998765
No 246
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.55 E-value=5.7e-05 Score=60.28 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+|.+|+++|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999876
No 247
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.55 E-value=3.7e-05 Score=57.36 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 444567899999999999999999998655
No 248
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.54 E-value=3.3e-05 Score=59.48 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL 50 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i 50 (209)
.-++|.|+||+|||++++.+++.++..++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 45899999999999999999999986543
No 249
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.54 E-value=3.8e-05 Score=57.57 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444567799999999999999999998765
No 250
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.54 E-value=3.9e-05 Score=57.20 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.0
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445677899999999999999999998654
No 251
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.54 E-value=4.7e-05 Score=56.94 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.-..+-+++|.|++|||||||.+.|+-.
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44456789999999999999999999875
No 252
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.54 E-value=3.1e-05 Score=57.87 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.2
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334567899999999999999999998655
No 253
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.54 E-value=1.4e-05 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.-|+|.|+||+|||++|+.+++..+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34488999999999999999988776
No 254
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.53 E-value=4e-05 Score=56.97 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 444577899999999999999999998655
No 255
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.53 E-value=4.1e-05 Score=56.72 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=24.9
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.-..+-+++|.|++|||||||.+.|+-.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44456789999999999999999999875
No 256
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.53 E-value=3.6e-05 Score=57.25 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.|++|||||||.+.|+-.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567799999999999999999998655
No 257
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.53 E-value=8.2e-05 Score=57.11 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=25.6
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...++.+|+|+|++|+||||++..|+..+
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999999876
No 258
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.53 E-value=5.8e-05 Score=64.60 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=32.7
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLR 57 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~ 57 (209)
+....|.-|++.||||+|||.+|+.++.+++.++++ ..+++.
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 333456679999999999999999999999987765 344443
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.52 E-value=0.0012 Score=48.37 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+.+++|.|+||+||||+|..++-
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999999988754
No 260
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.52 E-value=7e-05 Score=60.58 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+..++|.|+||+|||++++.|++.+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345567899999999999999999997
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.52 E-value=2.9e-05 Score=56.15 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=25.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+.+++|.|++|||||||.+.|+-.+
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334567789999999999999999998655
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.52 E-value=3.5e-05 Score=56.34 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++.+++|.|++|||||||.+.|+-.+
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567799999999999999999998765
No 263
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.52 E-value=3.5e-05 Score=56.74 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.4
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567799999999999999999998755
No 264
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.51 E-value=5.7e-05 Score=53.75 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=22.6
Q ss_pred hhhcccccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 10 KEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 10 ~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
....+.+...+...|+|.|.+|+|||||.+.|...
T Consensus 13 ~~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 13 NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ----------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 33445565566778999999999999999999753
No 265
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.51 E-value=5.3e-05 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+-+++|.|++|||||||.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 266
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.49 E-value=4.9e-05 Score=56.85 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.1
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445677899999999999999999998654
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.49 E-value=8.1e-05 Score=56.42 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.8
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-..+.+++|.|+||||||||+..|+-.+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567799999999999999999988765
No 268
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=6.6e-05 Score=54.95 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.++.++.|.|+|||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35679999999999999999999874
No 269
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.47 E-value=4.3e-05 Score=56.53 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+-.+
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344567799999999999999999998654
No 270
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.47 E-value=8.6e-05 Score=58.24 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
...+.+++|+|++||||||+.+.|+..+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34567899999999999999999988663
No 271
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.47 E-value=6.2e-05 Score=52.89 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=22.5
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.+..++..|++.|.+|||||||+..|...
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 333445568999999999999999999754
No 272
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=7.3e-05 Score=57.83 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.+++.||||+||||+++.++..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999999999864
No 273
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.46 E-value=9.6e-05 Score=57.47 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...+|.|.|+||||||||.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 274
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.46 E-value=6.8e-05 Score=52.34 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=21.2
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...+...|+|.|.+|+|||||.+.|..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 344567899999999999999999975
No 275
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.45 E-value=4.6e-05 Score=57.36 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++-+++|.|++|||||||.+.|+-.+
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334567799999999999999999998665
No 276
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.45 E-value=4.7e-05 Score=56.50 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=25.2
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-+++|.|++|||||||.+.|+..+
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567799999999999999999998654
No 277
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.45 E-value=0.00011 Score=53.28 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+..+++++|+||+||||++..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999888877
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.45 E-value=8.6e-05 Score=57.84 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...-+++|+||+||||||+.+.|...+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344599999999999999999998766
No 279
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.44 E-value=9.6e-05 Score=57.66 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGY 47 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~ 47 (209)
+..++|.|+||+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567899999999999999999999864
No 280
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.44 E-value=0.00011 Score=57.35 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..++.+|+|+|+||+||||++..|+..+
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999876
No 281
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.44 E-value=7.4e-05 Score=58.10 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.||+||||||+.+.|+-.+
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444567899999999999999999998654
No 282
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.43 E-value=0.00012 Score=52.73 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+.+.|+|.|.+||||||++..|...+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999875
No 283
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00011 Score=53.91 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.+++|.|+|||||||++..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999988876543
No 284
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.42 E-value=0.00012 Score=54.38 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
++...|+|.||||+|||+++..|+..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3345799999999999999999998754
No 285
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.42 E-value=0.0001 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.++|.|++|||||||.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999766
No 286
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=9e-05 Score=57.48 Aligned_cols=22 Identities=32% Similarity=0.758 Sum_probs=20.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 028388 24 VFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 24 i~i~G~pgsGKsTla~~L~~~l 45 (209)
++|.||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999965
No 287
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.40 E-value=9.1e-05 Score=51.25 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.....|+|.|.+|||||||.+.|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999754
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.39 E-value=0.0001 Score=58.89 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..|.+|+|+|++||||||++..|+..+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999876
No 289
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.39 E-value=9.1e-05 Score=57.70 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-.++-++.|.|++|||||||.+.|+-.+
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 445677899999999999999999998654
No 290
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.39 E-value=9.2e-05 Score=57.66 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.9
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-++.|.||+||||||+.+.|+-.+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3444567899999999999999999998654
No 291
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.39 E-value=9.2e-05 Score=58.02 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.||+||||||+.+.|+-.+
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444567899999999999999999998655
No 292
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.39 E-value=8.8e-05 Score=58.01 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
...++|.|++|||||||++.|+..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999999999988653
No 293
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00014 Score=55.63 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.++..++|.|+||+||||+++.+++.++
T Consensus 44 ~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3444599999999999999999999864
No 294
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.37 E-value=8.1e-05 Score=56.32 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-.++.+++|.|++|||||||.+.|+-.+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34567799999999999999999998665
No 295
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.37 E-value=0.00013 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+...++|.|+||+||||+++.+++.+
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 343349999999999999999999986
No 296
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.0001 Score=57.49 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.9
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-++.|.||+||||||+.+.|+-.+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3444567899999999999999999998654
No 297
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=51.70 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=21.4
Q ss_pred hcccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 12 ~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
....+...+...|+|.|.+|+|||||.+.|..
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 19 SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ---------CEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccCCcCcCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34455556678899999999999999999875
No 298
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.36 E-value=9.2e-05 Score=56.81 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+..+++|+|+.||||||+.+.|...
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhh
Confidence 34568999999999999999999864
No 299
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.36 E-value=0.00012 Score=55.09 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+..+++|.|+||||||||+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999988543
No 300
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.35 E-value=0.0001 Score=54.81 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+..++|.|+||+|||++|+.+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45688999999999999999998764
No 301
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.35 E-value=0.00016 Score=57.53 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
...-+++|+||+||||||+.+.|...++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999998874
No 302
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.35 E-value=0.00015 Score=55.94 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD 54 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~ 54 (209)
.+++|.|++|+||||+++.+++..++.+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 689999999999999999999988877776543
No 303
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.35 E-value=0.00011 Score=57.56 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=25.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.||+|||||||.+.|+-.+
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 444567899999999999999999998654
No 304
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.35 E-value=6.9e-05 Score=64.56 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
..+..+++.||||+||||+++.|+..++..++.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 455678999999999999999999999865544
No 305
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.35 E-value=6.8e-05 Score=58.01 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
-++|.|+||+|||++|+.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 399999999999999999999886
No 306
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.35 E-value=0.00017 Score=50.73 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=24.6
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+...+...|+|.|.+|||||||.+.|...
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344456788999999999999999999753
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.35 E-value=8.5e-05 Score=55.41 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=25.0
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-. +-+++|.|++|||||||.+.|+-.+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 7899999999999999999998643
No 308
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.34 E-value=8.7e-05 Score=57.99 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
....+++|+|++||||||+++.|...+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567899999999999999999998764
No 309
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.34 E-value=0.00017 Score=52.12 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+++.|+|.|.+|||||||+..|...+
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3457889999999999999999998875
No 310
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.34 E-value=9.3e-05 Score=57.51 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=25.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.||+|||||||.+.|+-.+
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344567799999999999999999998654
No 311
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.33 E-value=0.00015 Score=62.08 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----------CCceecH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF----------GYTHLSA 52 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l----------~~~~i~~ 52 (209)
..+..++|.|+||+||||+|+.|++.+ +..++..
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 445578999999999999999999997 6666655
No 312
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.33 E-value=5.6e-05 Score=57.60 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-..+.++.|.|++|||||||.+.|+..+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34567799999999999999999998755
No 313
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00038 Score=53.05 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=24.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...+++.+++.||||+||||+++.|++.
T Consensus 13 i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 13 IEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34445678999999999999999999985
No 314
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.32 E-value=0.0002 Score=49.16 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+.++..|+|.|.+|+|||||.+.|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999999964
No 315
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.32 E-value=0.0002 Score=55.51 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=25.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...++.+|+|.|+||+||||++..|+..+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34677899999999999999999998765
No 316
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.32 E-value=0.00014 Score=55.60 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~ 52 (209)
+.+++|.|+||+||||||..++...| ..+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45689999999999999999987643 345555
No 317
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00017 Score=50.92 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=22.3
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.++...+...|+|.|.+|+|||||.+.|...
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3444456678999999999999999999763
No 318
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.31 E-value=0.00021 Score=50.48 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
..++..|+|.|.+|+|||||.+.|...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999864
No 319
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.30 E-value=0.00015 Score=56.37 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+.++.|.|+||||||||+..|+-..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 466799999999999999999999776
No 320
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.29 E-value=0.00011 Score=57.48 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=25.2
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.-..+-++.|.||+|||||||.+.|+-.+
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344567799999999999999999998654
No 321
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.29 E-value=0.00019 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.++.|.|+||||||||+..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998765
No 322
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.29 E-value=0.00019 Score=49.81 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=22.1
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
|...+...|+|.|.+|+|||||.+.+...
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 44456678999999999999999998753
No 323
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.00015 Score=55.31 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.++..++|.|+||+||||+++.+++.+
T Consensus 40 ~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 40 GNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 343349999999999999999999986
No 324
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.28 E-value=0.00015 Score=51.21 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...|+|.|++|||||||.+.|....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998643
No 325
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.28 E-value=8.4e-05 Score=57.65 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.9
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-++.|.||+||||||+.+.|+-.+
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3444567899999999999999999998654
No 326
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.28 E-value=0.00016 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|++|+|||||.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999975
No 327
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.28 E-value=0.00019 Score=58.36 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+|.+|+|+|+|||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999766
No 328
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.28 E-value=0.0002 Score=61.41 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=27.0
Q ss_pred CCe-EEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388 20 KPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS 51 (209)
Q Consensus 20 ~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~i~ 51 (209)
+|. .++|.|+||+|||++|+.|++.++..++.
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~ 518 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence 444 69999999999999999999999865543
No 329
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.27 E-value=0.00015 Score=57.17 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=24.6
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.-..+-++.|.||+||||||+.+.|+-.
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34456789999999999999999999854
No 330
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.27 E-value=0.00024 Score=52.67 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..++.++++.|.+||||||++..|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999999999765
No 331
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.27 E-value=0.0001 Score=52.63 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=24.5
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+...++..|+|.|++|||||||.+.|..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5566778999999999999999999864
No 332
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.27 E-value=0.00021 Score=50.11 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..+...|+|.|.+|||||||.+.+..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 34456799999999999999988765
No 333
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=51.04 Aligned_cols=29 Identities=28% Similarity=0.195 Sum_probs=22.1
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...+...|+|.|.+|+|||||.+.|....
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34456789999999999999999987543
No 334
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.25 E-value=0.0002 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
++..|+|.|++|+|||||.+.|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999763
No 335
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.24 E-value=0.00032 Score=49.66 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+.++++++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999998887
No 336
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.24 E-value=0.00022 Score=49.29 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.++..|+|.|.+|||||||.+.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999965
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.24 E-value=0.0002 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.+.+|+|+.||||||+...|.--++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34899999999999999999976554
No 338
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.23 E-value=0.00015 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+...|+|.|.+|+|||||.+.|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3456799999999999999999874
No 339
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.23 E-value=0.0002 Score=48.90 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|||||||.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 340
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.23 E-value=0.00017 Score=49.97 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+...|+|.|.+|+|||||.+.+...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999763
No 341
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00026 Score=49.78 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+...|+|.|++|||||||...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999764
No 342
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.23 E-value=0.0002 Score=51.24 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.....|+|.|.+|+|||||.+.|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999763
No 343
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.22 E-value=0.00027 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+.+|++.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999777
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.22 E-value=0.00023 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
..|+|.|++|||||||.+.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 56999999999999999999864
No 345
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.21 E-value=0.00024 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+..|+|.|.||+|||||.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999754
No 346
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.21 E-value=0.00019 Score=57.08 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.2
Q ss_pred ccCCCCeE--EEEEcCCCCChhHHHHHHHHH
Q 028388 16 VTVKKPTV--VFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 16 ~~~~~~~~--i~i~G~pgsGKsTla~~L~~~ 44 (209)
+....+.+ ++|.|++|||||||.+.|+..
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34445666 999999999999999999754
No 347
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.21 E-value=0.00028 Score=53.55 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.+|+++|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999776
No 348
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.20 E-value=0.00023 Score=48.50 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+..|+|.|.+|||||||.+.|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998753
No 349
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.20 E-value=8.9e-05 Score=57.68 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.9
Q ss_pred cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.-..+-++.|.||+|||||||.+.|+-.+
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445567899999999999999999998654
No 350
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.20 E-value=0.00027 Score=48.93 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+...|+|.|.+|||||||.+.|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999764
No 351
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.20 E-value=0.00013 Score=56.32 Aligned_cols=27 Identities=41% Similarity=0.495 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
...+++|.|++||||||+.+.|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999988764
No 352
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00015 Score=58.39 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-..+.+++|.|++|||||||++.|+..+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34467899999999999999999998755
No 353
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.19 E-value=0.00033 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+|.+|+++|++||||||++..|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999766
No 354
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.18 E-value=0.0003 Score=50.52 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+...|+|.|++|||||||...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999998654
No 355
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.18 E-value=0.00022 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+...|+|.|.+|+|||||.+.|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4456799999999999999999975
No 356
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.17 E-value=0.00025 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|||||||.+.|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998753
No 357
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.17 E-value=0.00031 Score=54.20 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFGYT 48 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~ 48 (209)
|..+++.|+||+||||+|+.+++.++..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 5679999999999999999999998753
No 358
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.17 E-value=0.00029 Score=47.81 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.|++.|.+|+||||+.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999754
No 359
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.17 E-value=0.00033 Score=49.16 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
......|+|.|.+|||||||.+.|...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 344567999999999999999998754
No 360
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.17 E-value=0.00026 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
..|++.|.+|||||||.+.|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999754
No 361
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.15 E-value=0.0003 Score=54.63 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~ 52 (209)
++.++.|.|+||||||||+..++... ...+++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56799999999999999999988654 2455665
No 362
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.15 E-value=0.00018 Score=58.75 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
..+..++|+|++||||||+.+.|...+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3566799999999999999999987663
No 363
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.14 E-value=0.00015 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
.-++|.|+||+|||++|+.|+..++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4689999999999999999999874
No 364
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.14 E-value=0.00032 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+...|+|.|.+|||||||.+.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999975
No 365
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00028 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|++.|.+|+|||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999975
No 366
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.13 E-value=0.0003 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+..|++.|.+|||||||.+.|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999753
No 367
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.13 E-value=0.00043 Score=48.81 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=24.3
Q ss_pred ccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..+...+...|+|.|.+|+|||||.+.|..
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 334445677899999999999999999853
No 368
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.12 E-value=0.00031 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+..|+|.|.+|+|||||.+.|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45799999999999999999864
No 369
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.12 E-value=0.00031 Score=49.33 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+...|+|.|.+|+|||||.+.|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34567999999999999999998753
No 370
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.11 E-value=0.00039 Score=48.89 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+...|+|.|.+|+|||||.+.|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 346799999999999999999876
No 371
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.11 E-value=0.0003 Score=55.65 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~ 42 (209)
+..++.|.|+||||||||+..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 46699999999999999999876
No 372
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.10 E-value=0.00027 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
++..|+|.|.+|||||||.+.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999753
No 373
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.10 E-value=0.00031 Score=54.59 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+.+++|.|++|||||||.+.|...+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 35689999999999999999997544
No 374
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.10 E-value=0.00034 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+..|+|.|.+|||||||.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35699999999999999999975
No 375
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.10 E-value=0.00025 Score=61.59 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+..++|.|+||+||||+++.|++.+
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999999987
No 376
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.09 E-value=0.00028 Score=50.12 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCccccCcchhhccc----ccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 1 MGTVVETPVKEADAT----VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
||.--++|.+.+... ....+...|+|.|.+|+|||||.+.|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 1 MGSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp ---------------------CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CCccccccccccccccccccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 444445554443322 1223456799999999999999999864
No 377
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.08 E-value=0.00034 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.++.|.|++||||||+.+.|...+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999998743
No 378
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.08 E-value=0.00038 Score=48.59 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+...|+|.|.+|||||||.+.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 5667899999999999999999875
No 379
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.08 E-value=0.0004 Score=48.45 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+...|+|.|.+|+|||||.+.|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 380
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.00038 Score=53.95 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
..+.++.|.|+|||||||++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999875
No 381
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.07 E-value=0.00041 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCe-EEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPT-VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~-~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+|. .++|.||||+|||++|+.|++.+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 444 69999999999999999999987
No 382
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.06 E-value=0.00033 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..+..|+|.|.+|+|||||.+.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 4456899999999999999999874
No 383
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.06 E-value=0.00034 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~ 42 (209)
.++..|+|.|++|||||||...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567889999999999999999986
No 384
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.06 E-value=0.00038 Score=52.95 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
...+++|.|++|||||||.+.|. .+.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 35689999999999999999998 543
No 385
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.05 E-value=0.00033 Score=49.36 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=21.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
....+..|+|.|.+|+|||||.+.|..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344566899999999999999999864
No 386
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.05 E-value=0.00044 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+.+.+|.|+.||||||+...|.=
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999864
No 387
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.05 E-value=0.00032 Score=55.35 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCeEEEE--EcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFV--LGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i--~G~pgsGKsTla~~L~~~l 45 (209)
.+..++| .|+||+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 5677888 9999999999999999876
No 388
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.05 E-value=0.00045 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+|.+|+|.|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999877
No 389
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.05 E-value=0.00041 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
....|+|.|.+|+|||||.+.|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 345799999999999999999875
No 390
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.05 E-value=0.0005 Score=53.00 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA 52 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~ 52 (209)
.+++|.|++|+||||+++.+++..+ ..+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 4899999999999999999998875 344443
No 391
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.04 E-value=0.00046 Score=53.74 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~ 52 (209)
++.++.|.|+|||||||+|..++... ...+++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56799999999999999999988654 3556665
No 392
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.04 E-value=0.0004 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+..|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35699999999999999999874
No 393
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.03 E-value=0.00028 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..|+|.|++|+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999975
No 394
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.03 E-value=0.00039 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+..|+|.|.+|+|||||.+.|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999975
No 395
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00032 Score=49.34 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
....|+|.|.+|+|||||.+.|...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34579999999999999999998644
No 396
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.02 E-value=0.00038 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
...|+|.|.+|+|||||.+.|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999998753
No 397
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.02 E-value=0.00032 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|.+|+|||||.+.|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999974
No 398
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.02 E-value=0.00044 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
++..|++.|.+|+|||||.+.|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999986
No 399
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.02 E-value=0.00054 Score=52.43 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+.+++|.|.||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998654
No 400
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.01 E-value=0.00051 Score=52.34 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
...-++|.|++|+||||++..|.++ |+.+++-
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 3567999999999999999999875 7766654
No 401
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.00 E-value=0.00048 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChhHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~ 42 (209)
..|+|.|.+|+|||||.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999985
No 402
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.00 E-value=0.00043 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+.++.|.|+|||||||++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 46799999999999999999998754
No 403
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.00 E-value=0.00055 Score=48.88 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=23.0
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
|...+...|+|.|.+|+|||||.+.|..
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhc
Confidence 3344556799999999999999999875
No 404
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.00 E-value=0.00044 Score=48.15 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|||||||.+.|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999998753
No 405
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.00 E-value=0.00044 Score=49.06 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|.+|+|||||.+.|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999875
No 406
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.99 E-value=0.00038 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
..|++.|.+|||||||.+.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 407
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.99 E-value=0.00037 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+...|+|.|.||+|||||.+.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456899999999999999999974
No 408
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.99 E-value=0.00048 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
...|+|.|+||||||||.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999754
No 409
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.99 E-value=0.00038 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
....|+|.|.+|||||||.+.|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999864
No 410
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.99 E-value=0.00038 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
...|+|.|.+|+|||||.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999999754
No 411
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.99 E-value=0.00048 Score=47.86 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|||||||.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3457999999999999999999753
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.98 E-value=0.00048 Score=48.09 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
....|+|.|.+|+|||||.+.|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999763
No 413
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.00065 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.....|+|.|.+|||||||.+.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3456799999999999999999975
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.98 E-value=0.00053 Score=48.48 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=20.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..+...|+|.|.+|+|||||.+.|..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999874
No 415
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.97 E-value=0.0005 Score=52.34 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+..|+|.|+||+|||++|+.+.+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34568899999999999999999865
No 416
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.96 E-value=0.00054 Score=58.71 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+..++|.|+||+||||+++.|++.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999987
No 417
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.96 E-value=0.00055 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..|+|.|.+|||||||.+.|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999863
No 418
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.96 E-value=0.00039 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
...++|.|+||+||||+++.|+..++
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35789999999999999999999875
No 419
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.95 E-value=0.00047 Score=50.83 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=21.4
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
....+..|+|.|.||+|||||...|..
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhC
Confidence 334567899999999999999999864
No 420
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.95 E-value=0.00054 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+.++.|.|+|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999864
No 421
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.95 E-value=0.00046 Score=59.91 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=23.4
Q ss_pred CCe-EEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPT-VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~-~i~i~G~pgsGKsTla~~L~~~l 45 (209)
+|. .++|.|+||+|||++|+.|++.+
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 443 79999999999999999999988
No 422
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.95 E-value=0.00037 Score=49.25 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=21.6
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
...+...|+|.|.+|+|||||.+.+...+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34456689999999999999999876643
No 423
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.95 E-value=0.00044 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|.+|+|||||.+.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999999975
No 424
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.95 E-value=0.00064 Score=47.51 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..+...|+|.|.+|||||||.+.|..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 35667899999999999999999974
No 425
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.95 E-value=0.00053 Score=48.68 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
....|+|.|.+|+|||||.+.|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999998754
No 426
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.95 E-value=0.0006 Score=48.30 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|||||||.+.|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999998753
No 427
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.94 E-value=0.00066 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
...|+|.|.+|+|||||.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999854
No 428
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.94 E-value=0.00047 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..|+|.|.+|||||||.+.|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999874
No 429
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.94 E-value=0.00049 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+..|+|.|.+|+|||||.+.|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999999875
No 430
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.93 E-value=0.00038 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
...|+|.|.+|+|||||.+.|...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45799999999999999998876554
No 431
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.93 E-value=0.00067 Score=48.74 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
......|+|.|.+|+|||||.+.|...
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 344567999999999999999998753
No 432
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.92 E-value=0.0006 Score=48.75 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+...|+|.|.+|+|||||...|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999753
No 433
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.92 E-value=0.00064 Score=52.73 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.-.++.++.|.|++||||||+.+.|+....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445778999999999999999999998875
No 434
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.92 E-value=0.00096 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..|++.|+||+||||++-.++..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 469999999999999998888766
No 435
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.91 E-value=0.00057 Score=48.01 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.+..|+|.|.+|+|||||.+.|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999753
No 436
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.00054 Score=48.80 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|+|||||.+.|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999998753
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.00052 Score=48.92 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
....|+|.|.+|||||||...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 346799999999999999999875
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.91 E-value=0.00049 Score=57.16 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
-..+.++.|.|++||||||+.+.|+..+
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466789999999999999999998766
No 439
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.90 E-value=0.00053 Score=48.68 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
....|+|.|.+|+|||||.+.|..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 345799999999999999999864
No 440
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00055 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
++..|+|.|.+|+|||||.+.|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999875
No 441
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.90 E-value=0.00056 Score=48.49 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.++..|++.|++|+|||||.+.|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999864
No 442
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.89 E-value=0.00071 Score=54.15 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.8
Q ss_pred ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.-.++.++.|.|++|||||||.+.|+....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3445778999999999999999999998774
No 443
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.89 E-value=0.0007 Score=56.10 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+++|.|+||+||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998765
No 444
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.89 E-value=0.00071 Score=50.12 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.++..|+|.|.+||||||+...|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999743
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.89 E-value=0.00059 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+++|.|++|||||||.+.|+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4689999999999999999996543
No 446
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.88 E-value=0.00044 Score=57.44 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.0
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-..+.++.|.|++||||||+.+.|+..+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33566789999999999999999998766
No 447
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.87 E-value=0.00081 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.+++|.|+||+||||++..++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56699999999999999999988754
No 448
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.87 E-value=0.00062 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|.+|+|||||.+.|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 449
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.87 E-value=0.00061 Score=55.05 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.0
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-.. -++.|.|++||||||+.+.|+-.+
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 3344 789999999999999999998766
No 450
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.87 E-value=0.00078 Score=47.94 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+...|+|.|.+|+|||||.+.+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999999875
No 451
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00058 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|+|||||.+.|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999753
No 452
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.00061 Score=56.00 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++-++.|.|++||||||+.+.|+-.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56799999999999999999998654
No 453
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.86 E-value=0.0008 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..+..+.|.|+|||||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999987
No 454
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00048 Score=48.42 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|+|||||.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 455
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.86 E-value=0.00074 Score=45.91 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 028388 23 VVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.|++.|.+|+|||||.+.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.86 E-value=0.00061 Score=47.92 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+...|+|.|.+|+|||||.+.|...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4567999999999999999998764
No 457
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.84 E-value=0.00051 Score=57.27 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.0
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-.++.++.|.|++||||||+.+.|+..+
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34567799999999999999999998765
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.84 E-value=0.0014 Score=47.08 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 18 VKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+.++.+++|++||||||.+-.++.++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457899999999999999999988877
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.83 E-value=0.00073 Score=55.57 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+-++.|.|++|||||||.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999999999999999998654
No 460
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.83 E-value=0.00074 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
+...|+|.|.+|+|||||.+.|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999874
No 461
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.82 E-value=0.00079 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.++|.|+|||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999877
No 462
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.82 E-value=0.00046 Score=57.51 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=24.8
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-..+.++.|.|++||||||+.+.|+..+
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 33567789999999999999999998765
No 463
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.82 E-value=0.00073 Score=47.14 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
..|+|.|.+|+|||||.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999998753
No 464
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.80 E-value=0.00089 Score=48.51 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+...|+|.|.+|+|||||...|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999864
No 465
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.80 E-value=0.00059 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~ 42 (209)
...|+|.|.+|||||||.+.|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
No 466
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.80 E-value=0.00098 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.....|+|.|.+|+|||||...|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999874
No 467
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.78 E-value=0.00025 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+..+++|.|+||||||||.+.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4679999999999999999999643
No 468
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.78 E-value=0.00092 Score=52.15 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+...|+|.|.+||||||+++.+.=.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 457789999999999999999985433
No 469
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.77 E-value=0.00093 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
...|+|.|.||+|||||.+.|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999853
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.77 E-value=0.00084 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|.+|+|||||.+.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999875
No 471
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.77 E-value=0.001 Score=51.93 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG 53 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~ 53 (209)
++.++.|.|+||+||||+|..++... ...+++.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46689999999999999999988754 35566653
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.77 E-value=0.00081 Score=55.15 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANI 41 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L 41 (209)
.++.+++|.|++|||||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 45779999999999999999994
No 473
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.77 E-value=0.0007 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|++.|.||||||||.+.|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999975
No 474
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.76 E-value=0.00073 Score=51.55 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.++.+-.|+|+|.||+|||||.+.|..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 344556899999999999999999864
No 475
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.76 E-value=0.00052 Score=49.38 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.3
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
.......|+|.|.+|||||||...|...
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445678999999999999999998764
No 476
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.76 E-value=0.00096 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 028388 23 VVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 23 ~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++.|.|+||||||||+..++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999988876543
No 477
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.76 E-value=0.00092 Score=50.84 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA 52 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~ 52 (209)
...-++|.|++|+||||+|..|.+ .|+.+++-
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~D 177 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGD 177 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence 356799999999999999999865 56666654
No 478
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.75 E-value=0.0008 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
-..-|+|.|++|+|||||.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999864
No 479
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.00077 Score=47.24 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
...|+|.|.+|+|||||.+.|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999753
No 480
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.73 E-value=0.001 Score=54.79 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
.+.+|.|.|++|+||||||+.+++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999995
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.00098 Score=55.55 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+-++.|.|++||||||+.+.|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457799999999999999999998655
No 482
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.72 E-value=0.0011 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVEHFG 46 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~~l~ 46 (209)
+.+.+|.|+.||||||+...|.=-++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999865443
No 483
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.71 E-value=0.00079 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIV 42 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~ 42 (209)
.+...|+|.|.+|+|||||.+.|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999984
No 484
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.71 E-value=0.00041 Score=57.60 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-.++.++.|.||+||||||+.+.|...+
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34567799999999999999999998765
No 485
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.70 E-value=0.0011 Score=55.08 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
..+.+|+|.|++|+||||+|..++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3567999999999999999999864
No 486
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.70 E-value=0.001 Score=47.11 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|.+|+|||||.+.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999875
No 487
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.68 E-value=0.00082 Score=55.26 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
++-++.|.|+.|||||||.+.|+-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.68 E-value=0.0012 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+..+++|.|+||||||||++.++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999998654
No 489
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.68 E-value=0.0014 Score=52.62 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.+.+++|.|+||+||||++..++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999988654
No 490
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.68 E-value=0.0015 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..-+++|.|.||+|||||+..++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998764
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.67 E-value=0.00089 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.++-++.|.|++|||||||++.|+-.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 492
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.67 E-value=0.00084 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+-++.|.|+.|||||||.+.|+-.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 493
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.66 E-value=0.0011 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
+.|++.|.||||||||.+.|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999754
No 494
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.64 E-value=0.0015 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 028388 22 TVVFVLGGPGSGKGTQCANIVEH 44 (209)
Q Consensus 22 ~~i~i~G~pgsGKsTla~~L~~~ 44 (209)
..|+|.|.||+|||||.+.+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999753
No 495
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.63 E-value=0.001 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 028388 21 PTVVFVLGGPGSGKGTQCANIVE 43 (209)
Q Consensus 21 ~~~i~i~G~pgsGKsTla~~L~~ 43 (209)
...|+|.|.+|+|||||.+.|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999864
No 496
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.63 E-value=0.075 Score=41.49 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=26.9
Q ss_pred cCCCCeEEEEEc-CCCCChhHHHHHHHHHh---C--CceecHh
Q 028388 17 TVKKPTVVFVLG-GPGSGKGTQCANIVEHF---G--YTHLSAG 53 (209)
Q Consensus 17 ~~~~~~~i~i~G-~pgsGKsTla~~L~~~l---~--~~~i~~~ 53 (209)
...++++|.|.| ..|+||||++..||..+ | ..+++.|
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 345677777765 88999999999998766 3 4556643
No 497
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.63 E-value=0.0014 Score=47.11 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHH-HHHHh
Q 028388 20 KPTVVFVLGGPGSGKGTQCAN-IVEHF 45 (209)
Q Consensus 20 ~~~~i~i~G~pgsGKsTla~~-L~~~l 45 (209)
....|+|.|.+|||||||.+. +...+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345799999999999999999 55554
No 498
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.62 E-value=0.0006 Score=56.71 Aligned_cols=29 Identities=41% Similarity=0.472 Sum_probs=24.8
Q ss_pred cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
.-..+.++.|.|++||||||+.+.|+..+
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33567799999999999999999998766
No 499
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=96.62 E-value=0.028 Score=43.08 Aligned_cols=160 Identities=13% Similarity=0.160 Sum_probs=78.1
Q ss_pred EEEEcCCCCChhH-------HHHHHHHHhCCceecH---hHHH---HHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388 24 VFVLGGPGSGKGT-------QCANIVEHFGYTHLSA---GDLL---RAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ 90 (209)
Q Consensus 24 i~i~G~pgsGKsT-------la~~L~~~l~~~~i~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (209)
|+|.||.+.|=-+ |...|.++++..+.-+ .++. +..... ......+......+ ....+..-++
T Consensus 145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~-~~~~~~~e~~~~~~---~~~ev~seVe 220 (337)
T 4dey_A 145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNN-PSKHAIIERSNTRS---SLAEVQSEIE 220 (337)
T ss_dssp EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC--------------------CC---CHHHHHHHHH
T ss_pred eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhc-ccchhhhccccccc---chHHHHhHHH
Confidence 8999999999764 6666777776542211 0100 000000 00011111111111 2233445566
Q ss_pred HHHHhc-CCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhc
Q 028388 91 KAMEES-GNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKVFLESS 167 (209)
Q Consensus 91 ~~~~~~-~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~ 167 (209)
...... .++.+|+|--+. ...+. .. ....+ ++||+.. +.+++.+|+..| +. ...+++....+..
T Consensus 221 ~i~~v~~~Gk~vILDIDvQnGa~ql---k~-~~~~~-i~IFI~PPS~eeLe~RL~~R--Gt------~~~~rl~~al~~a 287 (337)
T 4dey_A 221 RIFELARTLQLVVLDADTINHPAQL---SK-TSLAP-IVVYVKISSPKVLQRLIKSR--GK------SQAKHLNVQMVAA 287 (337)
T ss_dssp HHHHHTTTCCEEEEEETTCCSGGGT---TT-SSCCC-EEEEECCSCHHHHHHHHHTT--CH------HHHTTHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEeCcHHHHHHH---Hh-cCCCC-EEEEEECcCHHHHHHHHHhC--Cc------hHHHHHHHHHHHH
Confidence 655543 489999995443 33332 22 33445 4555555 578899999877 32 2223333221111
Q ss_pred hhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388 168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202 (209)
Q Consensus 168 ~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~ 202 (209)
...+..+...-+++++|. ++++.++++...|..
T Consensus 288 e~E~~~~~~~FDyvIVND--dLe~A~~~L~~iI~~ 320 (337)
T 4dey_A 288 DKLAQCPPELFDVILDEN--QLEDACEHLADYLEA 320 (337)
T ss_dssp HHHHHSCGGGCSEEECCS--SHHHHHHHHHHHHHH
T ss_pred HHHHhhCcccCCEEEECC--CHHHHHHHHHHHHHH
Confidence 111222233345666665 688888888887755
No 500
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.62 E-value=0.0011 Score=55.38 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388 19 KKPTVVFVLGGPGSGKGTQCANIVEHF 45 (209)
Q Consensus 19 ~~~~~i~i~G~pgsGKsTla~~L~~~l 45 (209)
..+-++.|.|++|||||||.+.|+-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 466799999999999999999998654
Done!