Query 028389
Match_columns 209
No_of_seqs 181 out of 599
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:46:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.8 2.5E-08 8.4E-13 75.7 8.2 100 22-136 5-105 (110)
2 2i68_A Protein EMRE; transmemb 98.6 2.2E-08 7.4E-13 79.3 4.4 99 23-136 6-105 (137)
3 3arc_J Photosystem II reaction 13.7 1.7E+02 0.0057 17.9 2.9 11 61-71 7-17 (40)
4 3j01_B Preprotein translocase 9.5 98 0.0034 23.0 1.0 54 102-156 17-75 (116)
5 1pp9_C Cytochrome B; cytochrom 8.1 3E+02 0.01 24.5 3.7 26 58-83 106-131 (379)
6 3cx5_C Cytochrome B-C1 complex 6.5 4.1E+02 0.014 23.7 3.8 26 58-83 105-132 (385)
7 2qjy_A Cytochrome B; cytochrom 6.1 4.3E+02 0.015 24.0 3.8 26 58-83 120-147 (445)
8 2i88_A Colicin-E1; protein-mem 5.1 4.7E+02 0.016 21.1 3.1 32 80-112 148-180 (191)
9 4a2n_B Isoprenylcysteine carbo 4.8 1.2E+03 0.04 18.0 7.0 22 54-76 118-139 (194)
10 3dl8_G Preprotein translocase 4.4 1E+03 0.034 21.2 5.1 22 107-128 169-191 (429)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.76 E-value=2.5e-08 Score=75.68 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccCcccCCCCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhhhHH
Q 028389 22 ILALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSII 100 (209)
Q Consensus 22 ~LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PL-ga~~lv 100 (209)
.+-+.+.++-..+....|++. + ..+.+.++.+...++++..+...|+...|.+.+.|+ .+++.+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v 69 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence 345566777778888888851 1 113355677888889999999999999999999999 899999
Q ss_pred HHHHHHHHHhhcccccccchhhhHheeceeeeEeec
Q 028389 101 ISAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (209)
Q Consensus 101 ~~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a 136 (209)
.+++++.+++||++++.++.|+.+++.|++++-..+
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998875543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.63 E-value=2.2e-08 Score=79.25 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccCcccCCCCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcc-hhhhHHH
Q 028389 23 LALSSSIFIGSSFIVKKKGLKKAGASGVRAGFGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPL-GALSIII 101 (209)
Q Consensus 23 LAl~ss~~i~~g~vlqK~~~~~~~~~~~~a~~~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PL-ga~~lv~ 101 (209)
+-+.+.++-..|....|++. + ..+.+.++.|.+.++++..+...++...|++.+.|+ .+++.++
T Consensus 6 ~Ll~ail~ev~~~~~lK~s~------g---------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~ 70 (137)
T 2i68_A 6 YLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (137)
T ss_dssp HHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc------c---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Confidence 44556677778888888851 1 112345578889999999999999999999999999 9999999
Q ss_pred HHHHHHHHhhcccccccchhhhHheeceeeeEeec
Q 028389 102 SAALAHIILRERLHIFGILGCILCVVGSTTIVLHA 136 (209)
Q Consensus 102 ~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a 136 (209)
+++++.+++||++++.++.|+++++.|++++....
T Consensus 71 ~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998875543
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=13.69 E-value=1.7e+02 Score=17.91 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.6
Q ss_pred chhHHHHHHHH
Q 028389 61 YEPLWWVGMIT 71 (209)
Q Consensus 61 ~~~~W~~G~~l 71 (209)
|-|+|.+|.+.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 56999999864
No 4
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=9.53 E-value=98 Score=23.02 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcccccccchhhhHheeceeeeEeecCCccc-----cCCHHHHHHHhcchh
Q 028389 102 SAALAHIILRERLHIFGILGCILCVVGSTTIVLHAPAERE-----IESVIEVWNLATEPA 156 (209)
Q Consensus 102 ~~ila~~~L~E~l~~~~~~G~~l~i~G~~lvv~~a~~~~~-----~~t~~el~~~~~~p~ 156 (209)
..+.+.+++.|.-...+..+....+.-+..+....++..+ ...-+|+ ++..+|.
T Consensus 17 ~~v~g~~~~~~~~~~~R~~~~~~~~~~a~~v~~~t~~g~~~~~F~kev~~El-kKV~WPt 75 (116)
T 3j01_B 17 VAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEV-RKVIWPT 75 (116)
T ss_dssp THHHHHHHTTTCCSCSSCCCTHHHHHHHHHHHHHHTTTSCTTTCSSSHHHHH-HHHHTTT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh-heeeCcC
Confidence 3334444444443444444433333222333333333332 3345666 5778887
No 5
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=8.07 E-value=3e+02 Score=24.50 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=18.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHH
Q 028389 58 SYLYEPLWWVGMITMVVGEIANFAAY 83 (209)
Q Consensus 58 ~~l~~~~W~~G~~l~~lG~~~~f~Al 83 (209)
+|.+.+.|..|+.++.+-..-.|..|
T Consensus 106 sy~~~~~W~~Gv~l~ll~m~~aF~GY 131 (379)
T 1pp9_C 106 SYTFLETWNIGVILLLTVMATAFMGY 131 (379)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCcceehhhHHHHHHHHHHHheee
Confidence 56666689999988766555555544
No 6
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=6.46 E-value=4.1e+02 Score=23.68 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=16.9
Q ss_pred ccc--chhHHHHHHHHHHHHHHHHHHHH
Q 028389 58 SYL--YEPLWWVGMITMVVGEIANFAAY 83 (209)
Q Consensus 58 ~~l--~~~~W~~G~~l~~lG~~~~f~Al 83 (209)
+|. |+..|..|+.++.+-..-.|..|
T Consensus 105 sy~~Pr~~~W~~Gv~l~ll~m~~aF~GY 132 (385)
T 3cx5_C 105 SYRSPRVTLWNVGVIIFILTIATAFLGY 132 (385)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceeeecHHHHHHHHHHHHHhh
Confidence 454 66789999988665554444443
No 7
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=6.08 E-value=4.3e+02 Score=24.02 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=18.1
Q ss_pred ccc--chhHHHHHHHHHHHHHHHHHHHH
Q 028389 58 SYL--YEPLWWVGMITMVVGEIANFAAY 83 (209)
Q Consensus 58 ~~l--~~~~W~~G~~l~~lG~~~~f~Al 83 (209)
+|. |+..|.+|++++.+-..-.|..|
T Consensus 120 sY~~Pr~~~W~~Gv~l~ll~m~taF~GY 147 (445)
T 2qjy_A 120 SYKAPREVTWIVGMLIYLAMMATAFMGY 147 (445)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccceeeehHHHHHHHHHHHHHhe
Confidence 454 66789999998766655555554
No 8
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=5.14 E-value=4.7e+02 Score=21.14 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=19.8
Q ss_pred HHHHhhccchhhhcchhhhHHHH-HHHHHHHhhc
Q 028389 80 FAAYAFAPAILVTPLGALSIIIS-AALAHIILRE 112 (209)
Q Consensus 80 f~Al~fap~slV~PLga~~lv~~-~ila~~~L~E 112 (209)
.+|+.| +..+-+|+|.+++..- ++.++++-.+
T Consensus 148 ~vA~~f-S~~~g~p~gi~g~aii~a~v~s~Idd~ 180 (191)
T 2i88_A 148 VVALLF-SLLAGTTLGIWGIAIVTGILCSYIDKN 180 (191)
T ss_dssp HHHHHH-HHHHTCCCCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHH-HHHHcchHHHHHHHHHHHHHHHHhCHH
Confidence 355533 5567789999998744 5555554433
No 9
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=4.77 E-value=1.2e+03 Score=18.04 Aligned_cols=22 Identities=18% Similarity=0.381 Sum_probs=13.7
Q ss_pred CCCccccchhHHHHHHHHHHHHH
Q 028389 54 FGGYSYLYEPLWWVGMITMVVGE 76 (209)
Q Consensus 54 ~~~~~~l~~~~W~~G~~l~~lG~ 76 (209)
++.+.+.|+|. ..|..++.+|.
T Consensus 118 ~G~y~~vRHP~-Y~G~~l~~~g~ 139 (194)
T 4a2n_B 118 EGIYKNIRHPM-YAHLWLWVITQ 139 (194)
T ss_dssp SSTTTTBSSHH-HHHHHHHHHHH
T ss_pred cCcchhccCcc-HHHHHHHHHHH
Confidence 45778888887 34444444444
No 10
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=4.42 E-value=1e+03 Score=21.25 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.3
Q ss_pred HHHhhcccccccch-hhhHheec
Q 028389 107 HIILRERLHIFGIL-GCILCVVG 128 (209)
Q Consensus 107 ~~~L~E~l~~~~~~-G~~l~i~G 128 (209)
..+++|.+|.++.- |+-+++.-
T Consensus 169 lmwL~E~It~~GiGnGiSliI~~ 191 (429)
T 3dl8_G 169 LVWIADRITEKGIGNGASLIIFA 191 (429)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHhhcCcCcchHHHHHH
Confidence 45679999997766 66555443
Done!