Query 028389
Match_columns 209
No_of_seqs 181 out of 599
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 17:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028389.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028389hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 12.7 93 0.0067 16.9 2.8 11 61-71 1-11 (34)
2 d1rh5a_ f.41.1.1 (A:) Preprote 10.6 41 0.003 28.1 1.3 71 55-128 101-175 (422)
3 d1q90b_ f.21.1.2 (B:) Cytochro 9.9 1.1E+02 0.0084 23.0 3.7 40 59-105 106-148 (212)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.4 36 0.0026 22.2 -0.8 15 135-149 4-18 (91)
5 d3cx5c2 f.21.1.2 (C:1-261) Mit 6.2 2.4E+02 0.018 21.6 4.1 38 63-107 112-149 (261)
6 d1ciia1 f.1.1.1 (A:451-624) Co 6.1 56 0.0041 24.4 0.1 42 73-114 125-167 (174)
7 d1h3ga1 b.1.18.2 (A:3-95) Cycl 5.7 18 0.0013 24.3 -2.8 22 176-197 54-77 (93)
8 d1ml8a_ d.227.1.2 (A:) Hypothe 5.2 3.8E+02 0.028 17.2 4.4 23 21-43 40-62 (134)
9 d1ppjc2 f.21.1.2 (C:15-260) Mi 5.2 2.6E+02 0.019 21.1 3.7 40 58-104 92-131 (246)
10 d2d7va1 d.227.1.1 (A:7-161) Hy 4.9 4.5E+02 0.032 17.5 4.7 28 14-43 58-85 (155)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.68 E-value=93 Score=16.90 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.1
Q ss_pred chhHHHHHHHH
Q 028389 61 YEPLWWVGMIT 71 (209)
Q Consensus 61 ~~~~W~~G~~l 71 (209)
|-|+|.+|.+-
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45899988753
No 2
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.61 E-value=41 Score=28.11 Aligned_cols=71 Identities=27% Similarity=0.279 Sum_probs=34.7
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHH---HHHhhcccccccch-hhhHheec
Q 028389 55 GGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALA---HIILRERLHIFGIL-GCILCVVG 128 (209)
Q Consensus 55 ~~~~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila---~~~L~E~l~~~~~~-G~~l~i~G 128 (209)
+++..+.+...+..+.+..+-......+..+ ....|....-.+.....+ -.+++|.++.++.- |+-+++.-
T Consensus 101 ~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~---~~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~GiGnGiSLiI~~ 175 (422)
T d1rh5a_ 101 ENRALFQGCQKLLSIIMCFVEAVLFVGAGAF---GILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAA 175 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 3445565666666665543333222222122 122333333333333222 34679999997765 66665543
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.87 E-value=1.1e+02 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=27.3
Q ss_pred ccchh---HHHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHH
Q 028389 59 YLYEP---LWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAAL 105 (209)
Q Consensus 59 ~l~~~---~W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~il 105 (209)
.+|+| .|+.|+.++.+-....|..|. -|-+..+.-...+.
T Consensus 106 syk~pre~~W~~Gv~l~~l~m~~aftGY~-------Lpw~q~sywa~~V~ 148 (212)
T d1q90b_ 106 GFKRPRELTWVTGVIMAVCTVSFGVTGYS-------LPWDQVGYWAVKIV 148 (212)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHH-------TTCBHHHHHHHHHH
T ss_pred cccCcccceehHhHHHHHHHHHHHHhhhh-------cchhhHHHHHHHHH
Confidence 34555 699999998777666676664 57777766555444
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.42 E-value=36 Score=22.25 Aligned_cols=15 Identities=7% Similarity=-0.170 Sum_probs=6.5
Q ss_pred ecCCccccCCHHHHH
Q 028389 135 HAPAEREIESVIEVW 149 (209)
Q Consensus 135 ~a~~~~~~~t~~el~ 149 (209)
+.|+.+.....+++.
T Consensus 4 ldP~gp~a~~i~~L~ 18 (91)
T d1fftb2 4 LDPKGQIGLEQRSLI 18 (91)
T ss_dssp SSCCSCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 345444434444443
No 5
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.16 E-value=2.4e+02 Score=21.63 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHHHHH
Q 028389 63 PLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAALAH 107 (209)
Q Consensus 63 ~~W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~ila~ 107 (209)
-.|+.|+.++.+-....|..|. -|-+..+.=...+...
T Consensus 112 ~~W~~Gv~l~~l~~~~af~GY~-------Lpw~q~s~w~~~Vit~ 149 (261)
T d3cx5c2 112 TLWNVGVIIFILTIATAFLGYC-------CVYGQMSHWGATVITN 149 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHCBHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhhhh-------cCCCcchhhHHHHHHH
Confidence 3599999998776666666653 3555555444444333
No 6
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=6.11 E-value=56 Score=24.37 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhccchhhhcchhhhH-HHHHHHHHHHhhccc
Q 028389 73 VVGEIANFAAYAFAPAILVTPLGALSI-IISAALAHIILRERL 114 (209)
Q Consensus 73 ~lG~~~~f~Al~fap~slV~PLga~~l-v~~~ila~~~L~E~l 114 (209)
++|.....++..+.|..+=+|+|.+++ +..++.+.++-.+.+
T Consensus 125 ~~g~~asav~a~~fs~~~g~~lgi~g~ali~~~v~a~Idd~~v 167 (174)
T d1ciia1 125 IAGNAATALVALVFSILTGSALGIIGYGLLMAVTGALIDESLV 167 (174)
T ss_dssp BTTCBHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 455555666666777778889999998 666777777655443
No 7
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=5.68 E-value=18 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=11.4
Q ss_pred eeeEEeeeee--hhccceeeEehh
Q 028389 176 THIMVYIGVC--SLVGSLSVCILH 197 (209)
Q Consensus 176 ~~~lvyi~ic--sl~gs~tVl~~K 197 (209)
.+.++|+-+. +--|.+.-.+.|
T Consensus 54 NYLFv~L~i~~~a~~g~~~i~f~~ 77 (93)
T d1h3ga1 54 NYLFVDLEIGPEAQPGSFDIVFKG 77 (93)
T ss_dssp TEEEEEEEECTTCCSEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCcEEEEEEec
Confidence 4467776665 234555544433
No 8
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=5.22 E-value=3.8e+02 Score=17.22 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 028389 21 LILALSSSIFIGSSFIVKKKGLK 43 (209)
Q Consensus 21 i~LAl~ss~~i~~g~vlqK~~~~ 43 (209)
++.|+.|+..+.+....+|++..
T Consensus 40 llaal~~C~~~~~~~~a~~~~i~ 62 (134)
T d1ml8a_ 40 VLMAAGGCSAIDVVSILQKGRQD 62 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34466777777777888888744
No 9
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.20 E-value=2.6e+02 Score=21.09 Aligned_cols=40 Identities=25% Similarity=0.508 Sum_probs=24.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhcchhhhHHHHHH
Q 028389 58 SYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIISAA 104 (209)
Q Consensus 58 ~~l~~~~W~~G~~l~~lG~~~~f~Al~fap~slV~PLga~~lv~~~i 104 (209)
+|.|.+.|..|+.++.+-....|..|. -|-++.|.-...+
T Consensus 92 sy~~~~~w~~G~~l~~l~m~~af~GY~-------Lpw~qms~wa~~V 131 (246)
T d1ppjc2 92 SYTFLETWNIGVILLLTVMATAFMGYV-------LPWGQMSFWGATV 131 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHH-------TTCBHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHeecc-------CCCcchhHHHHHH
Confidence 455555699999988665555555553 4666665544433
No 10
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio cholerae [TaxId: 666]}
Probab=4.94 E-value=4.5e+02 Score=17.54 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=19.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 028389 14 SSDNIKGLILALSSSIFIGSSFIVKKKGLK 43 (209)
Q Consensus 14 ~~~~~iGi~LAl~ss~~i~~g~vlqK~~~~ 43 (209)
++..++ +.|+.||+.+.+-.+.+|++..
T Consensus 58 nPeeLl--laAlasC~~~t~~~~a~~~gi~ 85 (155)
T d2d7va1 58 DPEEAF--VAALSSCHMLVFLSIAAKQRYL 85 (155)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHH--HHHHHHHHHHHHHHHHHHcCCC
Confidence 444443 4466777888888999999854
Done!