Query 028390
Match_columns 209
No_of_seqs 171 out of 3052
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 1.7E-41 3.7E-46 269.4 24.9 208 2-209 147-357 (397)
2 KOG0545 Aryl-hydrocarbon recep 99.9 9.1E-23 2E-27 152.8 18.0 177 31-207 145-329 (329)
3 KOG0553 TPR repeat-containing 99.9 1.5E-22 3.3E-27 155.9 12.9 125 55-194 76-200 (304)
4 KOG4234 TPR repeat-containing 99.9 4E-20 8.8E-25 135.0 15.0 134 56-199 91-224 (271)
5 KOG0548 Molecular co-chaperone 99.7 2.2E-17 4.8E-22 135.6 12.6 118 58-190 356-473 (539)
6 KOG0547 Translocase of outer m 99.7 5.5E-17 1.2E-21 132.1 14.4 127 50-192 105-233 (606)
7 PLN03088 SGT1, suppressor of 99.7 4.2E-16 9.1E-21 127.5 14.5 117 62-193 4-120 (356)
8 PRK15359 type III secretion sy 99.7 7.5E-16 1.6E-20 110.5 13.9 115 63-192 27-141 (144)
9 KOG4648 Uncharacterized conser 99.7 2.7E-16 5.8E-21 123.6 10.5 120 54-188 91-210 (536)
10 KOG0550 Molecular chaperone (D 99.7 6.1E-16 1.3E-20 123.8 10.8 128 56-195 245-372 (486)
11 KOG0548 Molecular co-chaperone 99.7 8.5E-16 1.9E-20 126.4 11.2 113 60-187 2-114 (539)
12 TIGR00990 3a0801s09 mitochondr 99.6 6.2E-15 1.3E-19 129.0 16.0 136 24-176 92-227 (615)
13 KOG0551 Hsp90 co-chaperone CNS 99.6 8.1E-15 1.8E-19 114.6 13.2 108 57-175 78-185 (390)
14 TIGR02552 LcrH_SycD type III s 99.6 3.7E-14 8E-19 100.3 13.9 117 60-191 17-133 (135)
15 PRK15363 pathogenicity island 99.6 5.7E-14 1.2E-18 100.2 14.0 109 57-180 32-140 (157)
16 PRK11189 lipoprotein NlpI; Pro 99.5 2.7E-13 5.8E-18 108.5 12.6 106 58-178 62-167 (296)
17 KOG4626 O-linked N-acetylgluco 99.5 1.1E-13 2.4E-18 116.1 9.8 132 59-206 251-382 (966)
18 PRK10370 formate-dependent nit 99.5 1.8E-12 3.8E-17 97.8 13.2 110 59-183 72-184 (198)
19 KOG4626 O-linked N-acetylgluco 99.5 2.2E-13 4.8E-18 114.3 9.0 121 57-192 385-505 (966)
20 TIGR02795 tol_pal_ybgF tol-pal 99.5 2.9E-12 6.3E-17 88.2 13.3 112 61-184 3-117 (119)
21 TIGR00990 3a0801s09 mitochondr 99.5 2.4E-12 5.1E-17 112.8 15.4 138 58-195 329-485 (615)
22 PF13414 TPR_11: TPR repeat; P 99.5 3.6E-13 7.7E-18 84.2 7.4 66 109-174 3-69 (69)
23 KOG0376 Serine-threonine phosp 99.4 5.1E-13 1.1E-17 109.3 7.9 120 60-194 4-123 (476)
24 KOG4642 Chaperone-dependent E3 99.4 1.6E-12 3.4E-17 97.8 8.6 114 59-187 9-127 (284)
25 PRK02603 photosystem I assembl 99.4 3E-11 6.4E-16 89.2 14.6 111 54-176 29-153 (172)
26 KOG1155 Anaphase-promoting com 99.4 8.6E-12 1.9E-16 101.6 12.3 122 67-204 337-458 (559)
27 KOG0624 dsRNA-activated protei 99.4 9.8E-12 2.1E-16 98.2 11.4 119 58-191 36-157 (504)
28 KOG1155 Anaphase-promoting com 99.3 3.7E-11 8.1E-16 98.0 14.1 133 58-206 362-494 (559)
29 KOG1126 DNA-binding cell divis 99.3 4.2E-12 9.1E-17 107.1 8.1 137 59-195 420-575 (638)
30 PRK15359 type III secretion sy 99.3 2.5E-11 5.5E-16 87.0 11.0 100 80-197 13-112 (144)
31 KOG0624 dsRNA-activated protei 99.3 1.6E-11 3.5E-16 97.0 10.7 137 56-206 265-401 (504)
32 PRK09782 bacteriophage N4 rece 99.3 5.9E-11 1.3E-15 107.9 15.5 119 62-195 611-729 (987)
33 PRK15331 chaperone protein Sic 99.3 4.8E-11 1.1E-15 85.6 11.8 119 58-192 35-153 (165)
34 TIGR03302 OM_YfiO outer membra 99.3 2.1E-10 4.5E-15 88.7 16.1 118 57-186 30-158 (235)
35 PF13432 TPR_16: Tetratricopep 99.3 1.3E-11 2.9E-16 76.1 7.4 64 114-177 2-65 (65)
36 CHL00033 ycf3 photosystem I as 99.3 2.1E-10 4.6E-15 84.3 14.8 110 56-177 31-154 (168)
37 PF12895 Apc3: Anaphase-promot 99.3 1.3E-11 2.7E-16 80.3 7.2 83 73-169 2-84 (84)
38 cd00189 TPR Tetratricopeptide 99.3 4.9E-11 1.1E-15 77.3 9.7 99 62-175 2-100 (100)
39 PRK10370 formate-dependent nit 99.3 1.1E-10 2.3E-15 88.1 12.6 118 73-206 52-172 (198)
40 KOG0546 HSP90 co-chaperone CPR 99.3 1.2E-11 2.7E-16 97.7 7.6 152 55-206 217-372 (372)
41 TIGR02521 type_IV_pilW type IV 99.3 5.2E-10 1.1E-14 84.9 16.4 136 60-195 65-221 (234)
42 KOG1173 Anaphase-promoting com 99.3 8.6E-11 1.9E-15 97.8 11.9 119 63-189 417-535 (611)
43 TIGR02521 type_IV_pilW type IV 99.3 3.3E-10 7.1E-15 86.0 14.2 137 58-194 29-186 (234)
44 KOG0547 Translocase of outer m 99.2 1.8E-10 3.9E-15 94.6 13.0 146 57-203 323-487 (606)
45 PRK12370 invasion protein regu 99.2 2E-10 4.3E-15 99.5 13.9 91 73-178 317-407 (553)
46 PRK09782 bacteriophage N4 rece 99.2 2.5E-10 5.4E-15 103.9 15.0 116 72-204 588-703 (987)
47 PRK10803 tol-pal system protei 99.2 5.8E-10 1.2E-14 87.5 15.1 114 61-186 143-260 (263)
48 PF13414 TPR_11: TPR repeat; P 99.2 2.4E-11 5.3E-16 75.8 6.0 66 60-140 3-69 (69)
49 COG3063 PilF Tfp pilus assembl 99.2 2.3E-10 5.1E-15 85.8 11.9 136 58-193 33-189 (250)
50 PF13429 TPR_15: Tetratricopep 99.2 7.1E-11 1.5E-15 93.8 9.5 130 60-205 146-275 (280)
51 PRK12370 invasion protein regu 99.2 2.2E-10 4.9E-15 99.2 13.1 113 76-204 354-467 (553)
52 COG5010 TadD Flp pilus assembl 99.2 4E-10 8.8E-15 86.0 12.7 122 62-198 102-223 (257)
53 KOG1126 DNA-binding cell divis 99.2 6.6E-11 1.4E-15 100.0 9.1 135 47-196 476-610 (638)
54 PRK15179 Vi polysaccharide bio 99.2 4.6E-10 9.9E-15 98.7 14.7 130 60-205 86-215 (694)
55 COG3063 PilF Tfp pilus assembl 99.2 8E-10 1.7E-14 83.0 13.3 63 109-171 69-131 (250)
56 PRK11189 lipoprotein NlpI; Pro 99.2 3.8E-10 8.2E-15 90.4 12.5 112 74-196 40-151 (296)
57 PRK15174 Vi polysaccharide exp 99.2 4.4E-10 9.6E-15 99.1 13.7 116 66-196 218-337 (656)
58 TIGR02552 LcrH_SycD type III s 99.2 2.5E-10 5.4E-15 80.6 9.3 101 81-196 4-104 (135)
59 PF13371 TPR_9: Tetratricopept 99.2 2.3E-10 4.9E-15 72.1 8.0 71 116-186 2-72 (73)
60 KOG1125 TPR repeat-containing 99.2 6.4E-11 1.4E-15 98.7 6.9 98 63-175 433-530 (579)
61 PRK15174 Vi polysaccharide exp 99.2 9.7E-10 2.1E-14 97.0 14.4 121 60-195 246-370 (656)
62 KOG4555 TPR repeat-containing 99.1 1.8E-09 3.8E-14 74.4 12.1 106 54-174 37-146 (175)
63 TIGR02917 PEP_TPR_lipo putativ 99.1 1.2E-09 2.5E-14 98.3 14.5 127 62-205 772-898 (899)
64 PF13525 YfiO: Outer membrane 99.1 8.4E-09 1.8E-13 78.2 16.9 126 59-196 4-146 (203)
65 PF13512 TPR_18: Tetratricopep 99.1 2.9E-09 6.3E-14 74.9 12.8 112 60-183 10-139 (142)
66 TIGR03302 OM_YfiO outer membra 99.1 3.2E-09 7E-14 82.0 14.6 126 61-198 71-224 (235)
67 PF14559 TPR_19: Tetratricopep 99.1 2.1E-10 4.6E-15 71.2 6.3 67 120-186 2-68 (68)
68 COG4785 NlpI Lipoprotein NlpI, 99.1 9.5E-11 2.1E-15 87.3 5.4 147 24-188 32-178 (297)
69 PRK10866 outer membrane biogen 99.1 1E-08 2.3E-13 79.7 17.0 125 60-196 32-180 (243)
70 KOG2076 RNA polymerase III tra 99.1 4.9E-09 1.1E-13 91.5 16.3 134 59-208 138-271 (895)
71 COG1729 Uncharacterized protei 99.1 3.8E-09 8.1E-14 81.6 13.8 114 62-187 143-259 (262)
72 TIGR02917 PEP_TPR_lipo putativ 99.1 3.2E-09 7E-14 95.5 15.4 123 58-195 123-245 (899)
73 PRK11788 tetratricopeptide rep 99.1 6.9E-09 1.5E-13 85.8 15.8 84 111-194 182-266 (389)
74 PRK11788 tetratricopeptide rep 99.1 5.9E-09 1.3E-13 86.2 15.4 116 63-194 183-299 (389)
75 PRK11447 cellulose synthase su 99.1 6.4E-09 1.4E-13 97.2 16.9 127 60-188 303-430 (1157)
76 PRK11447 cellulose synthase su 99.1 3.5E-09 7.5E-14 99.0 14.0 125 65-205 274-412 (1157)
77 KOG0553 TPR repeat-containing 99.1 1.7E-09 3.6E-14 84.2 9.8 93 112-205 84-176 (304)
78 PLN02789 farnesyltranstransfer 99.0 6.5E-09 1.4E-13 83.9 13.5 115 61-190 72-189 (320)
79 PRK10049 pgaA outer membrane p 99.0 4.6E-09 1E-13 94.3 13.8 113 60-188 49-161 (765)
80 PRK15363 pathogenicity island 99.0 8E-09 1.7E-13 73.9 11.1 95 109-204 35-129 (157)
81 KOG0550 Molecular chaperone (D 99.0 8.4E-09 1.8E-13 83.4 11.9 134 60-196 203-340 (486)
82 PLN02789 farnesyltranstransfer 99.0 1.8E-08 3.9E-13 81.3 13.5 120 70-205 47-169 (320)
83 KOG1308 Hsp70-interacting prot 99.0 8.4E-10 1.8E-14 87.2 5.4 124 52-191 106-229 (377)
84 cd00189 TPR Tetratricopeptide 99.0 2E-08 4.3E-13 64.8 11.0 86 111-196 2-87 (100)
85 PRK10049 pgaA outer membrane p 99.0 1.9E-08 4.2E-13 90.4 14.3 107 61-182 360-466 (765)
86 PF13432 TPR_16: Tetratricopep 99.0 1.5E-09 3.2E-14 66.8 5.1 64 65-143 2-65 (65)
87 PRK15179 Vi polysaccharide bio 98.9 4.2E-08 9.2E-13 86.5 14.6 117 58-189 118-235 (694)
88 PF13424 TPR_12: Tetratricopep 98.9 5E-09 1.1E-13 66.8 6.3 66 107-172 3-75 (78)
89 KOG2003 TPR repeat-containing 98.9 5.6E-09 1.2E-13 85.6 7.7 121 60-195 490-610 (840)
90 KOG4162 Predicted calmodulin-b 98.9 1.7E-08 3.7E-13 87.0 10.7 104 59-177 683-788 (799)
91 CHL00033 ycf3 photosystem I as 98.9 1.7E-08 3.7E-13 74.1 9.3 112 67-191 6-120 (168)
92 COG4783 Putative Zn-dependent 98.9 8E-08 1.7E-12 79.3 14.0 125 59-198 305-429 (484)
93 KOG2002 TPR-containing nuclear 98.9 5.6E-08 1.2E-12 85.7 13.6 118 62-191 272-390 (1018)
94 PLN03088 SGT1, suppressor of 98.9 3.4E-08 7.4E-13 81.1 11.8 91 112-203 5-95 (356)
95 PF09976 TPR_21: Tetratricopep 98.8 7.8E-08 1.7E-12 68.9 11.7 122 60-194 11-135 (145)
96 COG5010 TadD Flp pilus assembl 98.8 3.8E-08 8.2E-13 75.3 10.1 119 65-198 71-189 (257)
97 PF12688 TPR_5: Tetratrico pep 98.8 9.7E-08 2.1E-12 65.9 11.3 98 62-171 3-103 (120)
98 PF13424 TPR_12: Tetratricopep 98.8 3.7E-08 8E-13 62.8 8.5 73 58-138 3-75 (78)
99 TIGR02795 tol_pal_ybgF tol-pal 98.8 7.5E-08 1.6E-12 65.9 10.5 87 110-196 3-95 (119)
100 PRK14574 hmsH outer membrane p 98.8 1.4E-07 3E-12 84.7 14.5 144 60-205 34-196 (822)
101 PF14559 TPR_19: Tetratricopep 98.8 1.3E-08 2.9E-13 63.0 5.8 67 70-151 1-67 (68)
102 PF13371 TPR_9: Tetratricopept 98.8 4.5E-08 9.8E-13 61.5 8.2 70 67-151 2-71 (73)
103 PRK02603 photosystem I assembl 98.8 8.7E-08 1.9E-12 70.7 10.8 85 108-192 34-121 (172)
104 KOG0544 FKBP-type peptidyl-pro 98.8 7.1E-09 1.5E-13 66.4 4.2 42 1-42 65-107 (108)
105 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.6E-08 7.9E-13 81.4 8.6 67 107-173 73-142 (453)
106 COG4235 Cytochrome c biogenesi 98.8 2.7E-07 5.9E-12 72.2 12.7 113 59-186 155-270 (287)
107 KOG1840 Kinesin light chain [C 98.8 4.1E-07 8.9E-12 77.2 14.7 140 60-207 241-396 (508)
108 PF13429 TPR_15: Tetratricopep 98.8 8.7E-08 1.9E-12 76.1 10.2 119 65-196 115-233 (280)
109 KOG2002 TPR-containing nuclear 98.8 2.2E-07 4.8E-12 82.1 13.3 133 57-205 304-440 (1018)
110 KOG1128 Uncharacterized conser 98.7 6.3E-08 1.4E-12 83.2 9.0 129 61-205 486-614 (777)
111 PRK14720 transcript cleavage f 98.7 4.9E-07 1.1E-11 81.1 14.7 127 60-205 31-176 (906)
112 KOG1129 TPR repeat-containing 98.7 8.9E-08 1.9E-12 75.7 8.8 134 63-196 293-448 (478)
113 COG2956 Predicted N-acetylgluc 98.7 5.7E-07 1.2E-11 71.0 13.2 140 58-201 105-273 (389)
114 KOG1840 Kinesin light chain [C 98.7 8.9E-07 1.9E-11 75.2 15.1 131 57-194 280-426 (508)
115 COG4783 Putative Zn-dependent 98.7 4.2E-07 9.2E-12 75.1 12.4 108 63-185 343-450 (484)
116 PF09976 TPR_21: Tetratricopep 98.7 3E-06 6.4E-11 60.7 15.2 98 60-170 48-145 (145)
117 PF06552 TOM20_plant: Plant sp 98.7 5E-07 1.1E-11 65.8 10.7 97 76-187 7-124 (186)
118 KOG1156 N-terminal acetyltrans 98.6 4.7E-07 1E-11 77.1 11.7 119 62-195 9-127 (700)
119 KOG2076 RNA polymerase III tra 98.6 1.4E-06 3E-11 76.6 13.9 116 60-191 173-288 (895)
120 TIGR00540 hemY_coli hemY prote 98.6 1E-06 2.2E-11 73.8 12.7 133 59-206 262-398 (409)
121 TIGR00540 hemY_coli hemY prote 98.6 3.9E-06 8.4E-11 70.3 16.2 124 56-194 80-204 (409)
122 PRK10153 DNA-binding transcrip 98.6 2.9E-06 6.3E-11 72.9 15.0 118 60-178 339-488 (517)
123 KOG1129 TPR repeat-containing 98.6 5.4E-07 1.2E-11 71.4 9.6 100 64-179 227-326 (478)
124 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.2E-06 2.6E-11 72.6 11.8 73 55-139 70-142 (453)
125 PRK14574 hmsH outer membrane p 98.6 2E-06 4.3E-11 77.4 14.2 109 67-191 109-217 (822)
126 PF12895 Apc3: Anaphase-promot 98.6 1.5E-07 3.2E-12 60.9 5.3 76 122-198 2-79 (84)
127 KOG3060 Uncharacterized conser 98.6 4.6E-06 9.9E-11 63.9 13.8 136 63-198 89-246 (289)
128 cd05804 StaR_like StaR_like; a 98.6 1.3E-06 2.9E-11 71.4 12.0 99 61-174 115-217 (355)
129 PF14938 SNAP: Soluble NSF att 98.6 2E-06 4.3E-11 68.5 12.5 111 57-176 111-229 (282)
130 KOG1173 Anaphase-promoting com 98.5 8E-07 1.7E-11 74.6 10.2 124 59-197 311-434 (611)
131 COG2956 Predicted N-acetylgluc 98.5 5.9E-06 1.3E-10 65.4 14.4 121 55-191 175-296 (389)
132 COG4235 Cytochrome c biogenesi 98.5 4E-06 8.6E-11 65.8 13.3 116 77-208 139-257 (287)
133 KOG3060 Uncharacterized conser 98.5 5.1E-06 1.1E-10 63.7 13.4 83 65-162 159-244 (289)
134 PRK10747 putative protoheme IX 98.5 6.9E-06 1.5E-10 68.6 15.7 125 56-195 80-205 (398)
135 PF03704 BTAD: Bacterial trans 98.5 1.2E-05 2.6E-10 57.5 14.9 112 60-171 6-124 (146)
136 KOG4234 TPR repeat-containing 98.5 6E-06 1.3E-10 61.3 12.2 94 112-206 98-196 (271)
137 KOG1125 TPR repeat-containing 98.5 9.5E-07 2.1E-11 74.3 8.9 89 110-198 431-519 (579)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.7E-06 3.7E-11 71.5 9.8 92 67-173 207-298 (395)
139 PF13525 YfiO: Outer membrane 98.4 4.1E-05 8.9E-10 58.0 16.6 121 61-193 43-191 (203)
140 KOG2003 TPR repeat-containing 98.4 7.4E-07 1.6E-11 73.4 7.3 134 63-196 422-577 (840)
141 cd05804 StaR_like StaR_like; a 98.4 4.8E-06 1E-10 68.1 11.9 141 63-204 46-212 (355)
142 KOG4162 Predicted calmodulin-b 98.4 4.5E-06 9.7E-11 72.5 11.9 122 60-196 650-773 (799)
143 PRK10803 tol-pal system protei 98.4 6E-06 1.3E-10 64.9 11.7 94 110-204 143-243 (263)
144 KOG1310 WD40 repeat protein [G 98.4 1.2E-06 2.7E-11 73.2 7.9 123 55-192 369-494 (758)
145 PF13428 TPR_14: Tetratricopep 98.4 9.5E-07 2.1E-11 49.8 5.1 42 144-185 2-43 (44)
146 PF12968 DUF3856: Domain of Un 98.4 1E-05 2.2E-10 54.9 10.7 106 64-172 13-129 (144)
147 PF00515 TPR_1: Tetratricopept 98.4 6.2E-07 1.3E-11 47.5 3.9 32 144-175 2-33 (34)
148 KOG4648 Uncharacterized conser 98.4 1E-06 2.2E-11 70.3 6.4 84 112-195 100-183 (536)
149 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.3E-10 55.0 11.0 84 111-194 3-92 (120)
150 PF13431 TPR_17: Tetratricopep 98.3 6.3E-07 1.4E-11 47.5 3.1 32 132-163 2-33 (34)
151 PRK10747 putative protoheme IX 98.3 1.2E-05 2.6E-10 67.2 12.1 126 59-204 262-387 (398)
152 COG4105 ComL DNA uptake lipopr 98.3 0.00019 4.2E-09 55.4 17.5 125 60-196 34-172 (254)
153 PF00515 TPR_1: Tetratricopept 98.3 1.3E-06 2.9E-11 46.2 4.2 33 110-142 2-34 (34)
154 PF14938 SNAP: Soluble NSF att 98.3 1.3E-05 2.8E-10 63.9 11.6 105 59-173 74-185 (282)
155 PF07719 TPR_2: Tetratricopept 98.3 2.2E-06 4.7E-11 45.2 4.6 33 144-176 2-34 (34)
156 PF12569 NARP1: NMDA receptor- 98.3 1.2E-05 2.5E-10 69.0 11.2 90 107-196 192-281 (517)
157 KOG1174 Anaphase-promoting com 98.3 2.8E-05 6E-10 63.6 12.4 136 60-195 232-386 (564)
158 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3E-05 6.5E-10 64.2 12.9 106 73-196 182-287 (395)
159 PF13428 TPR_14: Tetratricopep 98.3 2.9E-06 6.2E-11 47.8 4.9 42 111-152 3-44 (44)
160 PRK14720 transcript cleavage f 98.2 2.6E-05 5.5E-10 70.4 12.4 112 61-188 117-268 (906)
161 KOG0495 HAT repeat protein [RN 98.2 3E-05 6.6E-10 66.7 12.1 129 63-191 587-733 (913)
162 PF14853 Fis1_TPR_C: Fis1 C-te 98.2 1.3E-05 2.9E-10 46.8 7.1 49 144-192 2-50 (53)
163 KOG0543 FKBP-type peptidyl-pro 98.2 1.5E-05 3.3E-10 64.8 9.7 100 60-174 257-357 (397)
164 KOG1128 Uncharacterized conser 98.2 2.3E-05 5E-10 67.9 11.3 90 107-196 483-572 (777)
165 PRK11906 transcriptional regul 98.2 4.5E-05 9.7E-10 63.5 12.4 103 76-190 274-385 (458)
166 PRK15331 chaperone protein Sic 98.2 1.5E-05 3.2E-10 57.6 8.4 89 108-196 36-124 (165)
167 PF04733 Coatomer_E: Coatomer 98.2 2.5E-05 5.4E-10 62.4 10.4 110 67-193 138-251 (290)
168 PRK10941 hypothetical protein; 98.1 4.3E-05 9.2E-10 60.2 11.2 82 106-187 178-259 (269)
169 PRK10866 outer membrane biogen 98.1 2.1E-05 4.6E-10 61.2 9.2 72 110-181 33-107 (243)
170 KOG4151 Myosin assembly protei 98.1 1.4E-05 3E-10 69.7 8.8 128 52-190 45-174 (748)
171 PF15015 NYD-SP12_N: Spermatog 98.1 5.4E-05 1.2E-09 62.0 11.5 114 58-171 174-290 (569)
172 KOG0495 HAT repeat protein [RN 98.1 6.4E-05 1.4E-09 64.7 11.9 120 63-197 654-773 (913)
173 PF04733 Coatomer_E: Coatomer 98.1 1.7E-05 3.8E-10 63.3 8.0 92 75-181 182-274 (290)
174 PF07719 TPR_2: Tetratricopept 98.1 1E-05 2.2E-10 42.6 4.5 33 110-142 2-34 (34)
175 KOG1127 TPR repeat-containing 98.1 2.9E-05 6.4E-10 69.4 9.6 136 60-195 492-648 (1238)
176 PRK11906 transcriptional regul 98.1 2.8E-05 6.1E-10 64.7 9.0 87 75-176 319-405 (458)
177 PF13512 TPR_18: Tetratricopep 98.1 3.6E-05 7.9E-10 54.3 8.2 71 110-180 11-84 (142)
178 KOG1130 Predicted G-alpha GTPa 98.0 1.1E-05 2.4E-10 65.9 6.0 110 55-173 190-305 (639)
179 KOG1156 N-terminal acetyltrans 98.0 0.00012 2.6E-09 62.8 11.3 66 111-176 77-142 (700)
180 COG4700 Uncharacterized protei 98.0 0.00042 9.1E-09 51.2 12.5 103 60-176 89-193 (251)
181 PF13181 TPR_8: Tetratricopept 97.9 1.8E-05 3.8E-10 41.7 3.8 32 144-175 2-33 (34)
182 KOG3785 Uncharacterized conser 97.9 0.00033 7.1E-09 56.6 12.3 125 64-189 61-231 (557)
183 COG1729 Uncharacterized protei 97.9 0.00023 4.9E-09 55.4 11.1 91 112-203 144-240 (262)
184 KOG3785 Uncharacterized conser 97.9 7.2E-05 1.6E-09 60.2 8.5 106 67-190 29-134 (557)
185 PF00254 FKBP_C: FKBP-type pep 97.9 2E-05 4.3E-10 52.0 4.6 40 1-40 53-94 (94)
186 KOG2796 Uncharacterized conser 97.9 0.00031 6.7E-09 54.5 11.2 129 60-188 177-334 (366)
187 KOG4555 TPR repeat-containing 97.9 6.8E-05 1.5E-09 52.0 6.5 65 112-176 46-110 (175)
188 KOG4642 Chaperone-dependent E3 97.8 5E-05 1.1E-09 57.9 5.9 82 113-194 14-95 (284)
189 KOG1174 Anaphase-promoting com 97.8 0.00036 7.9E-09 57.3 10.9 107 62-183 302-408 (564)
190 KOG1586 Protein required for f 97.8 0.0072 1.6E-07 46.3 16.5 112 66-177 79-229 (288)
191 KOG1127 TPR repeat-containing 97.8 0.00012 2.5E-09 65.7 8.0 110 61-185 563-672 (1238)
192 COG4785 NlpI Lipoprotein NlpI, 97.7 0.00016 3.4E-09 54.6 7.1 75 106-180 62-136 (297)
193 PF13181 TPR_8: Tetratricopept 97.7 6.8E-05 1.5E-09 39.4 3.7 33 110-142 2-34 (34)
194 PF10300 DUF3808: Protein of u 97.7 0.00062 1.3E-08 58.1 11.0 102 61-174 268-378 (468)
195 PF09986 DUF2225: Uncharacteri 97.7 0.0055 1.2E-07 46.8 15.0 103 66-176 83-198 (214)
196 KOG1941 Acetylcholine receptor 97.6 0.00042 9.2E-09 56.1 8.7 135 64-208 126-276 (518)
197 KOG1130 Predicted G-alpha GTPa 97.6 0.00076 1.6E-08 55.5 10.3 102 62-172 237-344 (639)
198 PF13174 TPR_6: Tetratricopept 97.6 0.00011 2.3E-09 38.2 3.6 32 145-176 2-33 (33)
199 KOG4507 Uncharacterized conser 97.6 0.00064 1.4E-08 58.2 9.2 101 73-187 620-720 (886)
200 COG3071 HemY Uncharacterized e 97.6 0.0052 1.1E-07 50.2 14.0 127 54-195 78-205 (400)
201 COG4105 ComL DNA uptake lipopr 97.5 0.0011 2.3E-08 51.4 9.0 72 109-180 34-108 (254)
202 PF13431 TPR_17: Tetratricopep 97.5 7.9E-05 1.7E-09 39.4 1.9 33 82-129 1-33 (34)
203 PF12569 NARP1: NMDA receptor- 97.5 0.0041 8.8E-08 53.6 13.1 97 62-173 196-292 (517)
204 KOG2376 Signal recognition par 97.5 0.0035 7.5E-08 53.7 12.3 90 64-171 83-203 (652)
205 COG2976 Uncharacterized protei 97.4 0.0069 1.5E-07 45.0 12.2 101 62-176 91-192 (207)
206 PLN03081 pentatricopeptide (PP 97.4 0.004 8.6E-08 55.9 12.9 63 110-172 495-557 (697)
207 KOG3824 Huntingtin interacting 97.4 0.0012 2.6E-08 52.4 8.1 84 109-192 116-199 (472)
208 KOG4340 Uncharacterized conser 97.4 0.00052 1.1E-08 54.3 6.0 93 59-166 143-264 (459)
209 KOG2053 Mitochondrial inherita 97.4 0.0052 1.1E-07 54.9 12.8 116 68-199 17-132 (932)
210 PLN03081 pentatricopeptide (PP 97.4 0.0044 9.5E-08 55.6 12.8 140 61-204 392-554 (697)
211 PRK10153 DNA-binding transcrip 97.4 0.0012 2.7E-08 56.9 8.8 67 62-144 422-488 (517)
212 KOG3364 Membrane protein invol 97.3 0.0028 6.1E-08 44.2 8.6 84 109-192 32-120 (149)
213 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0012 2.7E-08 38.5 5.9 40 111-150 3-42 (53)
214 COG0457 NrfG FOG: TPR repeat [ 97.3 0.02 4.3E-07 42.0 13.7 58 118-175 139-199 (291)
215 PF08631 SPO22: Meiosis protei 97.3 0.06 1.3E-06 42.8 17.0 124 50-174 25-152 (278)
216 smart00028 TPR Tetratricopepti 97.3 0.00054 1.2E-08 34.4 3.7 31 145-175 3-33 (34)
217 KOG0376 Serine-threonine phosp 97.3 0.00035 7.5E-09 58.2 4.1 66 112-177 7-72 (476)
218 PF13174 TPR_6: Tetratricopept 97.2 0.00062 1.3E-08 35.2 3.7 32 111-142 2-33 (33)
219 PF13176 TPR_7: Tetratricopept 97.2 0.00064 1.4E-08 36.3 3.7 25 146-170 2-26 (36)
220 COG4700 Uncharacterized protei 97.2 0.01 2.2E-07 44.0 10.9 114 67-196 63-179 (251)
221 PLN03077 Protein ECB2; Provisi 97.2 0.015 3.3E-07 53.4 14.4 135 60-196 554-710 (857)
222 PF13176 TPR_7: Tetratricopept 97.2 0.00066 1.4E-08 36.2 3.4 29 111-139 1-29 (36)
223 KOG2376 Signal recognition par 97.2 0.011 2.4E-07 50.7 12.0 119 61-182 13-149 (652)
224 KOG4814 Uncharacterized conser 97.2 0.0096 2.1E-07 51.7 11.7 105 59-172 353-457 (872)
225 PLN03218 maturation of RBCL 1; 97.1 0.024 5.1E-07 53.2 15.1 94 64-172 511-608 (1060)
226 KOG3081 Vesicle coat complex C 97.1 0.017 3.6E-07 45.1 11.8 130 63-192 111-256 (299)
227 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0081 1.8E-07 48.2 10.2 85 108-192 80-168 (390)
228 COG3118 Thioredoxin domain-con 97.1 0.035 7.6E-07 44.0 13.4 114 63-191 137-286 (304)
229 KOG1308 Hsp70-interacting prot 97.1 0.00032 7E-09 56.1 2.2 65 117-181 122-186 (377)
230 COG0457 NrfG FOG: TPR repeat [ 97.1 0.019 4E-07 42.1 11.7 108 69-188 139-247 (291)
231 smart00028 TPR Tetratricopepti 97.1 0.0013 2.7E-08 32.9 3.9 32 111-142 3-34 (34)
232 PF06552 TOM20_plant: Plant sp 97.1 0.007 1.5E-07 44.5 8.8 68 125-192 7-84 (186)
233 PLN03218 maturation of RBCL 1; 97.0 0.035 7.5E-07 52.1 15.4 84 111-195 651-737 (1060)
234 PRK10902 FKBP-type peptidyl-pr 97.0 0.0013 2.9E-08 51.8 5.1 42 2-44 208-250 (269)
235 KOG1915 Cell cycle control pro 97.0 0.025 5.5E-07 47.6 12.4 90 117-206 445-535 (677)
236 COG4976 Predicted methyltransf 97.0 0.0015 3.3E-08 49.7 4.7 60 118-177 4-63 (287)
237 PF05843 Suf: Suppressor of fo 97.0 0.016 3.5E-07 46.1 11.0 124 65-204 6-133 (280)
238 COG2912 Uncharacterized conser 97.0 0.009 2E-07 46.7 9.1 78 106-183 178-255 (269)
239 PRK04841 transcriptional regul 96.9 0.022 4.7E-07 52.6 13.2 102 62-172 493-602 (903)
240 PLN03077 Protein ECB2; Provisi 96.9 0.036 7.7E-07 51.0 14.5 92 63-171 628-719 (857)
241 PF06957 COPI_C: Coatomer (COP 96.9 0.12 2.7E-06 43.3 16.2 126 56-181 200-338 (422)
242 KOG1585 Protein required for f 96.9 0.022 4.8E-07 44.0 10.8 129 65-205 115-250 (308)
243 PF10602 RPN7: 26S proteasome 96.9 0.026 5.6E-07 41.8 10.6 102 58-171 34-141 (177)
244 KOG2396 HAT (Half-A-TPR) repea 96.8 0.04 8.6E-07 46.7 12.5 96 77-187 88-184 (568)
245 PF14561 TPR_20: Tetratricopep 96.8 0.015 3.3E-07 38.0 8.1 66 128-193 7-74 (90)
246 PRK04841 transcriptional regul 96.8 0.025 5.4E-07 52.2 12.5 100 63-172 455-560 (903)
247 PF04781 DUF627: Protein of un 96.8 0.032 6.9E-07 37.7 9.4 95 66-172 2-107 (111)
248 KOG2796 Uncharacterized conser 96.7 0.077 1.7E-06 41.6 12.5 82 106-187 209-296 (366)
249 KOG3081 Vesicle coat complex C 96.6 0.029 6.3E-07 43.8 9.7 70 110-179 208-278 (299)
250 KOG2610 Uncharacterized conser 96.6 0.054 1.2E-06 43.9 11.3 125 63-202 106-234 (491)
251 KOG3824 Huntingtin interacting 96.6 0.0077 1.7E-07 48.0 6.4 83 56-153 112-194 (472)
252 KOG1915 Cell cycle control pro 96.6 0.15 3.2E-06 43.2 14.0 127 61-204 74-200 (677)
253 KOG2471 TPR repeat-containing 96.6 0.0098 2.1E-07 50.1 7.1 120 61-187 241-379 (696)
254 COG3071 HemY Uncharacterized e 96.5 0.029 6.3E-07 46.0 9.4 111 63-192 266-376 (400)
255 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.028 6E-07 35.5 7.2 67 59-137 5-71 (80)
256 COG3629 DnrI DNA-binding trans 96.5 0.037 8E-07 43.8 9.6 106 65-172 108-216 (280)
257 KOG0545 Aryl-hydrocarbon recep 96.5 0.022 4.8E-07 44.0 7.9 79 108-186 177-273 (329)
258 PF03704 BTAD: Bacterial trans 96.4 0.15 3.3E-06 36.1 12.1 91 113-204 10-122 (146)
259 PF04184 ST7: ST7 protein; In 96.3 0.054 1.2E-06 45.9 10.2 105 64-181 263-384 (539)
260 PF05843 Suf: Suppressor of fo 96.3 0.065 1.4E-06 42.7 10.5 97 111-208 3-100 (280)
261 KOG4340 Uncharacterized conser 96.3 0.061 1.3E-06 42.9 9.8 103 70-191 20-122 (459)
262 PRK10941 hypothetical protein; 96.2 0.063 1.4E-06 42.5 9.8 78 60-152 181-258 (269)
263 COG3947 Response regulator con 96.2 0.033 7.1E-07 44.1 7.9 72 98-169 268-339 (361)
264 PF13374 TPR_10: Tetratricopep 96.2 0.01 2.3E-07 32.1 3.9 29 110-138 3-31 (42)
265 KOG4507 Uncharacterized conser 96.1 0.029 6.3E-07 48.4 7.7 120 72-204 225-347 (886)
266 PF10952 DUF2753: Protein of u 96.1 0.11 2.3E-06 35.8 8.9 119 62-186 3-125 (140)
267 PF04184 ST7: ST7 protein; In 96.1 0.21 4.7E-06 42.5 12.4 157 24-180 150-333 (539)
268 KOG1070 rRNA processing protei 96.0 0.17 3.7E-06 48.0 12.5 77 111-187 1566-1644(1710)
269 PF12968 DUF3856: Domain of Un 96.0 0.16 3.5E-06 34.9 9.5 76 59-138 54-129 (144)
270 PF07079 DUF1347: Protein of u 95.9 0.44 9.6E-06 40.2 13.5 137 55-192 374-545 (549)
271 PF12862 Apc5: Anaphase-promot 95.9 0.11 2.3E-06 34.1 8.2 64 69-138 7-70 (94)
272 COG4976 Predicted methyltransf 95.8 0.014 3E-07 44.7 4.1 61 68-143 3-63 (287)
273 KOG1070 rRNA processing protei 95.8 0.42 9.1E-06 45.5 14.0 118 55-191 1495-1614(1710)
274 PF08631 SPO22: Meiosis protei 95.8 0.39 8.4E-06 38.2 12.5 103 70-180 3-124 (278)
275 PF02259 FAT: FAT domain; Int 95.7 0.6 1.3E-05 37.9 13.9 127 58-195 144-310 (352)
276 PF02259 FAT: FAT domain; Int 95.7 0.48 1.1E-05 38.5 13.3 116 60-175 184-341 (352)
277 KOG1941 Acetylcholine receptor 95.7 0.16 3.5E-06 41.6 9.8 106 62-172 164-275 (518)
278 KOG1585 Protein required for f 95.7 0.77 1.7E-05 35.8 15.0 128 60-196 31-169 (308)
279 PRK13184 pknD serine/threonine 95.6 0.18 4E-06 46.6 11.0 122 63-197 478-606 (932)
280 PF09613 HrpB1_HrpK: Bacterial 95.6 0.26 5.6E-06 35.7 9.6 79 112-190 13-91 (160)
281 KOG2300 Uncharacterized conser 95.5 0.96 2.1E-05 38.6 13.8 99 60-173 367-475 (629)
282 PF10300 DUF3808: Protein of u 95.5 0.26 5.5E-06 42.3 11.0 70 110-179 268-341 (468)
283 PF13374 TPR_10: Tetratricopep 95.5 0.038 8.3E-07 29.8 4.1 30 143-172 2-31 (42)
284 PF12862 Apc5: Anaphase-promot 95.3 0.32 7E-06 31.8 8.9 56 119-174 8-72 (94)
285 KOG2471 TPR repeat-containing 95.2 0.029 6.2E-07 47.5 4.2 93 63-155 286-381 (696)
286 PF10602 RPN7: 26S proteasome 95.1 0.96 2.1E-05 33.4 12.9 65 108-172 35-102 (177)
287 PF14561 TPR_20: Tetratricopep 94.7 0.28 6.1E-06 31.9 7.2 48 80-142 8-55 (90)
288 PF10516 SHNi-TPR: SHNi-TPR; 94.5 0.078 1.7E-06 28.6 3.5 29 144-172 2-30 (38)
289 PF07720 TPR_3: Tetratricopept 94.5 0.15 3.2E-06 27.1 4.5 33 144-176 2-36 (36)
290 PF10373 EST1_DNA_bind: Est1 D 94.5 0.24 5.3E-06 38.9 7.8 62 128-189 1-62 (278)
291 TIGR03504 FimV_Cterm FimV C-te 94.4 0.19 4E-06 28.1 5.0 25 147-171 3-27 (44)
292 COG2976 Uncharacterized protei 94.4 1.2 2.5E-05 33.5 10.5 96 74-169 48-152 (207)
293 COG5191 Uncharacterized conser 94.3 0.086 1.9E-06 42.2 4.8 76 111-186 109-185 (435)
294 PF09986 DUF2225: Uncharacteri 94.3 0.5 1.1E-05 36.1 8.9 83 60-151 118-208 (214)
295 KOG4814 Uncharacterized conser 94.3 0.34 7.3E-06 42.5 8.6 74 111-184 356-435 (872)
296 PF10516 SHNi-TPR: SHNi-TPR; 94.3 0.075 1.6E-06 28.6 3.1 29 111-139 3-31 (38)
297 KOG2053 Mitochondrial inherita 94.1 0.48 1E-05 43.0 9.3 76 121-196 21-96 (932)
298 KOG1586 Protein required for f 94.1 2.2 4.7E-05 33.2 14.1 106 60-175 34-146 (288)
299 cd02682 MIT_AAA_Arch MIT: doma 94.0 0.72 1.6E-05 28.9 7.5 36 58-93 4-39 (75)
300 PF04910 Tcf25: Transcriptiona 93.9 0.42 9.1E-06 39.6 8.3 103 74-181 8-142 (360)
301 PF10345 Cohesin_load: Cohesin 93.9 4.4 9.5E-05 36.1 16.3 108 60-167 301-428 (608)
302 KOG2610 Uncharacterized conser 93.9 0.4 8.7E-06 39.0 7.7 93 65-168 142-234 (491)
303 PF09613 HrpB1_HrpK: Bacterial 93.8 1.8 4E-05 31.3 14.2 113 60-189 10-122 (160)
304 KOG3364 Membrane protein invol 93.8 1.1 2.3E-05 31.7 8.7 75 62-149 34-111 (149)
305 PF10373 EST1_DNA_bind: Est1 D 93.7 0.31 6.7E-06 38.3 7.0 62 79-155 1-62 (278)
306 PF11817 Foie-gras_1: Foie gra 93.7 0.91 2E-05 35.4 9.4 63 64-135 182-244 (247)
307 COG3898 Uncharacterized membra 93.6 2.8 6E-05 35.0 12.1 103 72-183 200-302 (531)
308 KOG0292 Vesicle coat complex C 93.5 3 6.6E-05 38.2 13.0 126 56-181 987-1122(1202)
309 cd02681 MIT_calpain7_1 MIT: do 93.4 1.2 2.6E-05 28.0 8.3 35 58-92 4-38 (76)
310 cd02679 MIT_spastin MIT: domai 93.4 1.3 2.8E-05 28.1 8.6 66 57-122 5-76 (79)
311 PF04212 MIT: MIT (microtubule 93.2 0.4 8.7E-06 29.4 5.5 35 58-92 3-37 (69)
312 KOG0686 COP9 signalosome, subu 93.2 0.56 1.2E-05 39.0 7.6 112 62-185 152-279 (466)
313 KOG2300 Uncharacterized conser 93.0 5.3 0.00011 34.3 14.7 100 59-166 45-150 (629)
314 PF07721 TPR_4: Tetratricopept 93.0 0.16 3.4E-06 24.7 2.8 23 145-167 3-25 (26)
315 PF10345 Cohesin_load: Cohesin 92.9 6.6 0.00014 35.0 15.0 123 58-190 57-188 (608)
316 KOG3617 WD40 and TPR repeat-co 92.8 0.74 1.6E-05 41.9 8.2 113 58-172 856-996 (1416)
317 COG2912 Uncharacterized conser 92.6 1.1 2.5E-05 35.2 8.4 72 65-151 186-257 (269)
318 TIGR02561 HrpB1_HrpK type III 92.0 3.4 7.4E-05 29.6 10.1 83 63-160 13-95 (153)
319 PF04910 Tcf25: Transcriptiona 91.9 3 6.5E-05 34.6 10.5 106 56-175 99-225 (360)
320 COG3118 Thioredoxin domain-con 91.8 1.6 3.4E-05 34.9 8.2 57 112-168 137-193 (304)
321 KOG1550 Extracellular protein 91.7 6.6 0.00014 34.5 13.0 101 65-186 293-405 (552)
322 KOG0530 Protein farnesyltransf 91.7 4.3 9.2E-05 32.1 10.3 109 71-194 54-164 (318)
323 PF15015 NYD-SP12_N: Spermatog 91.6 3.2 6.9E-05 35.0 10.1 86 114-199 181-284 (569)
324 KOG3617 WD40 and TPR repeat-co 91.5 2.3 4.9E-05 38.9 9.8 50 118-169 835-884 (1416)
325 PF11817 Foie-gras_1: Foie gra 91.4 4 8.6E-05 31.8 10.4 84 77-169 155-244 (247)
326 PHA02537 M terminase endonucle 91.4 3.5 7.6E-05 31.8 9.7 119 71-193 94-227 (230)
327 KOG2047 mRNA splicing factor [ 91.2 11 0.00023 33.7 13.3 115 61-190 478-599 (835)
328 cd02683 MIT_1 MIT: domain cont 91.1 2.6 5.6E-05 26.6 8.0 35 59-93 5-39 (77)
329 PF07079 DUF1347: Protein of u 91.0 2.2 4.8E-05 36.2 8.7 60 60-135 462-521 (549)
330 KOG0530 Protein farnesyltransf 90.8 2 4.4E-05 33.8 7.9 87 120-206 54-141 (318)
331 KOG0985 Vesicle coat protein c 90.7 2.2 4.8E-05 39.9 9.0 106 63-191 1197-1327(1666)
332 TIGR02561 HrpB1_HrpK type III 90.6 4.7 0.0001 28.9 9.0 84 111-194 12-95 (153)
333 COG3914 Spy Predicted O-linked 90.6 7.2 0.00016 34.2 11.6 78 110-187 102-186 (620)
334 PF07720 TPR_3: Tetratricopept 90.4 1.1 2.3E-05 23.8 4.4 32 111-142 3-36 (36)
335 cd02680 MIT_calpain7_2 MIT: do 90.2 0.89 1.9E-05 28.5 4.6 35 58-92 4-38 (75)
336 PF10255 Paf67: RNA polymerase 90.1 0.6 1.3E-05 39.1 4.9 60 112-171 125-192 (404)
337 PF11207 DUF2989: Protein of u 89.9 1.2 2.5E-05 33.6 5.8 51 69-130 149-199 (203)
338 PF07721 TPR_4: Tetratricopept 89.7 0.55 1.2E-05 22.7 2.8 23 111-133 3-25 (26)
339 cd02684 MIT_2 MIT: domain cont 89.5 0.99 2.1E-05 28.3 4.5 37 57-93 3-39 (75)
340 cd02678 MIT_VPS4 MIT: domain c 89.5 3.6 7.8E-05 25.6 8.3 36 57-92 3-38 (75)
341 cd02677 MIT_SNX15 MIT: domain 89.3 3.8 8.2E-05 25.7 7.6 37 58-94 4-40 (75)
342 KOG1497 COP9 signalosome, subu 89.2 11 0.00023 30.8 12.7 92 104-196 98-199 (399)
343 PF14863 Alkyl_sulf_dimr: Alky 89.0 3.3 7.2E-05 29.4 7.3 49 144-192 71-119 (141)
344 TIGR03504 FimV_Cterm FimV C-te 89.0 0.84 1.8E-05 25.4 3.4 27 113-139 3-29 (44)
345 PRK15180 Vi polysaccharide bio 88.9 4.4 9.5E-05 34.9 9.0 106 60-180 289-394 (831)
346 smart00745 MIT Microtubule Int 88.9 1.6 3.5E-05 27.2 5.2 36 57-92 5-40 (77)
347 PF10255 Paf67: RNA polymerase 88.7 2.4 5.2E-05 35.6 7.4 131 69-206 131-265 (404)
348 PF08424 NRDE-2: NRDE-2, neces 88.6 12 0.00026 30.5 13.6 63 125-187 47-109 (321)
349 PF10579 Rapsyn_N: Rapsyn N-te 88.5 4.5 9.7E-05 25.6 6.8 61 112-172 9-72 (80)
350 KOG1310 WD40 repeat protein [G 88.3 2.4 5.2E-05 36.7 7.1 76 121-196 386-464 (758)
351 cd02682 MIT_AAA_Arch MIT: doma 88.0 4.8 0.0001 25.2 7.2 41 146-186 9-56 (75)
352 COG3914 Spy Predicted O-linked 87.8 7.9 0.00017 34.0 10.0 99 77-188 48-147 (620)
353 PF11207 DUF2989: Protein of u 87.8 2.8 6E-05 31.7 6.5 77 118-195 115-196 (203)
354 PF13281 DUF4071: Domain of un 87.6 7.6 0.00016 32.3 9.6 70 112-181 182-264 (374)
355 PF14863 Alkyl_sulf_dimr: Alky 87.3 2 4.3E-05 30.5 5.3 51 110-160 71-121 (141)
356 KOG0529 Protein geranylgeranyl 86.8 16 0.00034 30.7 10.8 107 69-190 84-196 (421)
357 cd02656 MIT MIT: domain contai 86.7 5.6 0.00012 24.6 8.3 36 58-93 4-39 (75)
358 COG4649 Uncharacterized protei 86.6 11 0.00024 28.0 11.7 99 62-171 96-195 (221)
359 PF09205 DUF1955: Domain of un 85.6 8.2 0.00018 27.3 7.4 41 131-171 108-148 (161)
360 KOG1550 Extracellular protein 85.5 22 0.00047 31.4 11.9 103 73-189 262-372 (552)
361 smart00386 HAT HAT (Half-A-TPR 85.4 2.7 5.9E-05 20.6 4.1 26 158-183 2-27 (33)
362 COG4455 ImpE Protein of avirul 85.3 12 0.00026 28.9 8.7 69 118-186 10-78 (273)
363 KOG2047 mRNA splicing factor [ 85.2 28 0.00061 31.3 15.4 29 61-89 388-416 (835)
364 PF11846 DUF3366: Domain of un 83.8 5 0.00011 29.8 6.4 50 125-175 127-176 (193)
365 smart00386 HAT HAT (Half-A-TPR 83.8 3.1 6.8E-05 20.3 3.9 29 123-151 1-29 (33)
366 KOG2041 WD40 repeat protein [G 83.4 7.7 0.00017 35.0 7.9 27 140-166 849-875 (1189)
367 KOG1839 Uncharacterized protei 83.3 23 0.0005 34.1 11.4 130 59-195 972-1117(1236)
368 COG3947 Response regulator con 83.3 5.9 0.00013 31.8 6.6 50 143-192 279-328 (361)
369 PF12854 PPR_1: PPR repeat 83.2 3.7 8E-05 21.2 3.9 28 141-168 5-32 (34)
370 COG3898 Uncharacterized membra 83.1 27 0.00059 29.5 12.0 89 66-171 126-216 (531)
371 KOG2561 Adaptor protein NUB1, 82.7 9.6 0.00021 32.4 7.9 119 49-171 152-295 (568)
372 PF13281 DUF4071: Domain of un 82.6 27 0.00059 29.1 13.7 82 109-190 141-230 (374)
373 PF09670 Cas_Cas02710: CRISPR- 82.2 28 0.00062 29.1 11.7 101 59-172 130-270 (379)
374 PF08424 NRDE-2: NRDE-2, neces 81.8 16 0.00036 29.6 9.1 62 130-191 6-79 (321)
375 KOG2114 Vacuolar assembly/sort 81.4 12 0.00026 34.3 8.5 33 60-92 368-400 (933)
376 KOG0529 Protein geranylgeranyl 80.9 33 0.00071 28.9 13.7 71 123-193 89-161 (421)
377 KOG3783 Uncharacterized conser 80.5 26 0.00056 30.6 9.9 80 111-190 451-538 (546)
378 PF15469 Sec5: Exocyst complex 80.3 15 0.00032 27.1 7.7 24 70-93 96-119 (182)
379 COG2909 MalT ATP-dependent tra 79.3 20 0.00044 33.1 9.3 86 64-159 462-553 (894)
380 PRK15180 Vi polysaccharide bio 79.0 6.4 0.00014 33.9 5.8 60 116-175 364-423 (831)
381 KOG1839 Uncharacterized protei 78.7 22 0.00049 34.2 9.7 107 58-172 930-1044(1236)
382 KOG3783 Uncharacterized conser 77.0 44 0.00095 29.2 10.3 96 63-172 270-375 (546)
383 KOG2396 HAT (Half-A-TPR) repea 76.1 24 0.00051 30.6 8.3 60 72-146 117-177 (568)
384 COG3629 DnrI DNA-binding trans 74.6 17 0.00038 29.0 6.9 62 142-204 152-213 (280)
385 COG2909 MalT ATP-dependent tra 74.4 75 0.0016 29.6 15.0 109 58-172 413-526 (894)
386 PF00244 14-3-3: 14-3-3 protei 74.2 22 0.00048 27.5 7.4 54 76-137 142-197 (236)
387 PF04053 Coatomer_WDAD: Coatom 74.0 24 0.00052 30.2 8.1 27 111-137 349-375 (443)
388 KOG0739 AAA+-type ATPase [Post 73.9 24 0.00052 28.7 7.5 37 56-92 6-42 (439)
389 KOG3616 Selective LIM binding 73.3 15 0.00033 33.6 6.8 44 122-166 745-788 (1636)
390 PF03745 DUF309: Domain of unk 72.2 17 0.00037 21.8 5.0 59 64-131 3-61 (62)
391 PRK15326 type III secretion sy 72.0 22 0.00049 22.5 6.2 46 159-204 23-68 (80)
392 COG4941 Predicted RNA polymera 72.0 56 0.0012 27.0 9.5 76 111-186 331-408 (415)
393 COG0790 FOG: TPR repeat, SEL1 71.5 48 0.001 26.1 15.1 29 62-90 111-143 (292)
394 KOG2041 WD40 repeat protein [G 71.3 10 0.00023 34.2 5.4 69 105-185 792-860 (1189)
395 PF01535 PPR: PPR repeat; Int 71.1 7.5 0.00016 18.7 2.9 24 112-135 3-26 (31)
396 KOG2422 Uncharacterized conser 70.9 77 0.0017 28.2 12.7 121 65-188 240-388 (665)
397 PRK13184 pknD serine/threonine 70.6 36 0.00078 32.1 8.9 75 112-188 555-639 (932)
398 PF04781 DUF627: Protein of un 70.3 31 0.00067 23.4 9.7 81 115-195 2-96 (111)
399 KOG1463 26S proteasome regulat 69.4 64 0.0014 26.7 11.4 118 64-191 213-332 (411)
400 KOG1258 mRNA processing protei 68.9 84 0.0018 27.9 13.3 48 116-163 373-420 (577)
401 COG5191 Uncharacterized conser 68.8 14 0.00029 30.2 5.1 67 65-146 112-179 (435)
402 PF02064 MAS20: MAS20 protein 68.8 19 0.00041 24.9 5.2 39 54-92 57-95 (121)
403 PF12739 TRAPPC-Trs85: ER-Golg 68.5 72 0.0016 27.0 10.9 101 63-172 211-329 (414)
404 KOG1464 COP9 signalosome, subu 67.9 23 0.00049 28.4 6.1 51 121-171 39-93 (440)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 67.5 38 0.00082 23.4 10.2 85 74-170 40-126 (126)
406 PF13041 PPR_2: PPR repeat fam 67.3 19 0.00042 19.9 5.9 28 111-138 5-32 (50)
407 KOG1914 mRNA cleavage and poly 67.0 58 0.0013 28.7 8.7 72 99-171 10-81 (656)
408 cd02683 MIT_1 MIT: domain cont 66.3 30 0.00064 21.7 6.6 17 116-132 13-29 (77)
409 PF12652 CotJB: CotJB protein; 66.0 30 0.00064 21.9 5.3 46 153-198 5-50 (78)
410 cd02679 MIT_spastin MIT: domai 65.0 19 0.0004 22.8 4.3 15 122-136 21-35 (79)
411 COG0790 FOG: TPR repeat, SEL1 64.9 67 0.0015 25.3 11.5 74 111-186 111-196 (292)
412 cd00280 TRFH Telomeric Repeat 64.7 15 0.00032 27.4 4.3 37 151-188 119-155 (200)
413 PF02184 HAT: HAT (Half-A-TPR) 64.5 17 0.00038 18.6 3.3 26 124-150 2-27 (32)
414 PF04212 MIT: MIT (microtubule 63.9 30 0.00064 20.9 6.8 25 147-171 9-33 (69)
415 TIGR00985 3a0801s04tom mitocho 63.7 37 0.00081 24.3 6.1 42 52-93 82-124 (148)
416 PRK15095 FKBP-type peptidyl-pr 63.4 6.2 0.00013 28.5 2.2 21 2-22 54-75 (156)
417 COG1747 Uncharacterized N-term 63.4 1.1E+02 0.0023 27.1 9.9 59 118-176 214-292 (711)
418 KOG4563 Cell cycle-regulated h 63.3 46 0.001 27.7 7.2 67 55-128 36-102 (400)
419 PF01239 PPTA: Protein prenylt 62.6 18 0.00039 17.9 3.9 25 129-153 3-27 (31)
420 TIGR00756 PPR pentatricopeptid 61.9 18 0.00039 17.6 3.4 25 112-136 3-27 (35)
421 KOG2422 Uncharacterized conser 61.6 1E+02 0.0022 27.5 9.3 105 57-175 339-451 (665)
422 KOG1463 26S proteasome regulat 61.3 63 0.0014 26.8 7.6 98 66-172 134-238 (411)
423 PF08969 USP8_dimer: USP8 dime 61.1 48 0.001 22.4 6.5 42 49-90 27-68 (115)
424 KOG4459 Membrane-associated pr 60.9 95 0.0021 26.7 8.8 118 60-187 31-177 (471)
425 KOG1258 mRNA processing protei 59.7 1.3E+02 0.0028 26.8 12.7 117 60-191 297-414 (577)
426 smart00671 SEL1 Sel1-like repe 59.1 22 0.00047 17.7 4.2 27 145-171 3-33 (36)
427 KOG2581 26S proteasome regulat 58.8 1.1E+02 0.0025 26.0 12.3 69 108-176 208-280 (493)
428 PF08238 Sel1: Sel1 repeat; I 58.4 24 0.00052 18.0 3.8 28 144-171 2-36 (39)
429 KOG3616 Selective LIM binding 57.7 29 0.00063 31.9 5.6 47 118-166 800-847 (1636)
430 cd02681 MIT_calpain7_1 MIT: do 57.4 22 0.00048 22.3 3.6 25 147-171 10-34 (76)
431 COG4455 ImpE Protein of avirul 57.0 91 0.002 24.3 8.2 63 66-143 7-69 (273)
432 KOG0985 Vesicle coat protein c 56.9 56 0.0012 31.3 7.3 32 55-86 1099-1130(1666)
433 PF08771 Rapamycin_bind: Rapam 56.3 46 0.001 22.0 5.3 84 107-190 12-97 (100)
434 KOG0890 Protein kinase of the 56.2 1.3E+02 0.0028 31.5 10.0 105 56-177 1666-1789(2382)
435 PF10952 DUF2753: Protein of u 56.1 67 0.0015 22.4 6.0 85 112-196 4-112 (140)
436 cd00280 TRFH Telomeric Repeat 55.7 86 0.0019 23.6 7.4 49 112-161 114-162 (200)
437 PF05053 Menin: Menin; InterP 55.0 1.5E+02 0.0034 26.3 9.5 90 74-188 274-369 (618)
438 smart00745 MIT Microtubule Int 55.0 48 0.001 20.4 7.9 18 153-170 18-35 (77)
439 PF07163 Pex26: Pex26 protein; 54.2 1.1E+02 0.0025 24.6 10.1 113 62-176 37-150 (309)
440 PF07219 HemY_N: HemY protein 54.2 63 0.0014 21.5 7.5 50 109-158 59-108 (108)
441 PF07219 HemY_N: HemY protein 54.0 53 0.0012 21.9 5.4 35 55-89 54-88 (108)
442 PF04190 DUF410: Protein of un 53.0 1.1E+02 0.0024 24.0 10.6 97 60-167 10-114 (260)
443 PF09797 NatB_MDM20: N-acetylt 53.0 41 0.00089 27.8 5.7 47 122-168 196-242 (365)
444 KOG0546 HSP90 co-chaperone CPR 52.9 12 0.00026 30.8 2.4 44 108-151 308-351 (372)
445 PF13812 PPR_3: Pentatricopept 52.6 28 0.0006 17.0 3.7 25 112-136 4-28 (34)
446 KOG4056 Translocase of outer m 52.4 74 0.0016 22.5 5.8 42 51-92 72-113 (143)
447 PF14689 SPOB_a: Sensor_kinase 52.3 45 0.00098 19.8 4.3 38 133-170 13-50 (62)
448 PF04053 Coatomer_WDAD: Coatom 52.1 87 0.0019 26.9 7.5 66 118-188 327-400 (443)
449 PF02064 MAS20: MAS20 protein 51.4 49 0.0011 22.8 4.9 29 113-141 67-95 (121)
450 KOG3677 RNA polymerase I-assoc 51.4 49 0.0011 28.2 5.6 74 113-186 276-352 (525)
451 smart00101 14_3_3 14-3-3 homol 50.8 94 0.002 24.3 6.9 53 76-136 144-198 (244)
452 COG5159 RPN6 26S proteasome re 50.8 1.4E+02 0.0029 24.4 9.7 100 65-173 130-236 (421)
453 PF08626 TRAPPC9-Trs120: Trans 49.4 33 0.00071 33.4 5.1 39 57-95 239-277 (1185)
454 TIGR02710 CRISPR-associated pr 49.2 1.6E+02 0.0035 24.8 11.6 63 61-133 131-195 (380)
455 COG5159 RPN6 26S proteasome re 48.2 1.5E+02 0.0033 24.1 9.0 68 105-172 121-194 (421)
456 PF04010 DUF357: Protein of un 46.2 72 0.0016 19.9 5.8 40 51-90 26-65 (75)
457 COG5107 RNA14 Pre-mRNA 3'-end 45.8 1.7E+02 0.0037 25.5 8.0 53 124-176 412-465 (660)
458 KOG0890 Protein kinase of the 45.2 4E+02 0.0088 28.3 13.8 66 106-173 1667-1732(2382)
459 PF15469 Sec5: Exocyst complex 45.1 94 0.002 22.8 6.0 42 154-195 97-142 (182)
460 KOG2582 COP9 signalosome, subu 45.0 66 0.0014 26.9 5.4 101 61-172 103-212 (422)
461 KOG0549 FKBP-type peptidyl-pro 44.7 25 0.00054 26.1 2.7 21 2-22 18-39 (188)
462 KOG0276 Vesicle coat complex C 43.9 1.1E+02 0.0024 27.6 6.8 68 117-189 645-720 (794)
463 COG5107 RNA14 Pre-mRNA 3'-end 43.6 74 0.0016 27.5 5.6 58 110-170 303-360 (660)
464 KOG2709 Uncharacterized conser 43.1 2.2E+02 0.0047 24.5 8.2 38 55-92 17-54 (560)
465 KOG2114 Vacuolar assembly/sort 42.6 2.9E+02 0.0064 25.9 9.8 35 108-142 367-402 (933)
466 PF12583 TPPII_N: Tripeptidyl 42.6 1.2E+02 0.0026 21.4 5.6 33 122-154 89-121 (139)
467 COG3014 Uncharacterized protei 39.6 2.3E+02 0.0049 23.7 10.3 130 62-192 60-242 (449)
468 cd02678 MIT_VPS4 MIT: domain c 39.1 93 0.002 19.1 6.8 20 151-170 14-33 (75)
469 COG5600 Transcription-associat 39.0 98 0.0021 26.0 5.5 62 113-175 181-252 (413)
470 COG1747 Uncharacterized N-term 38.2 2.9E+02 0.0063 24.6 11.3 81 112-194 69-149 (711)
471 COG4649 Uncharacterized protei 36.3 1.9E+02 0.004 21.8 8.5 116 66-194 64-184 (221)
472 KOG0276 Vesicle coat complex C 35.8 3.4E+02 0.0073 24.7 10.0 19 151-169 729-747 (794)
473 KOG4056 Translocase of outer m 34.9 1.3E+02 0.0028 21.3 4.9 36 148-183 86-121 (143)
474 cd02656 MIT MIT: domain contai 34.5 1.1E+02 0.0024 18.6 6.8 16 155-170 18-33 (75)
475 PF05053 Menin: Menin; InterP 33.1 1.2E+02 0.0025 27.0 5.3 55 73-137 292-346 (618)
476 PF05168 HEPN: HEPN domain; I 33.1 1.4E+02 0.003 19.4 6.0 35 55-89 3-37 (118)
477 KOG0889 Histone acetyltransfer 33.0 7.4E+02 0.016 27.8 12.5 85 106-191 2809-2901(3550)
478 TIGR00985 3a0801s04tom mitocho 32.9 1.3E+02 0.0029 21.6 4.8 36 148-183 95-131 (148)
479 KOG2997 F-box protein FBX9 [Ge 32.5 74 0.0016 26.1 3.8 41 52-92 11-51 (366)
480 COG4787 FlgF Flagellar basal b 31.9 40 0.00087 25.8 2.2 34 2-36 104-138 (251)
481 PF12753 Nro1: Nuclear pore co 31.4 57 0.0012 27.5 3.1 33 125-159 334-366 (404)
482 PF12309 KBP_C: KIF-1 binding 31.3 1.6E+02 0.0034 24.7 5.8 36 143-178 300-344 (371)
483 KOG1914 mRNA cleavage and poly 31.1 3.9E+02 0.0084 23.9 11.8 57 123-179 380-437 (656)
484 PRK15490 Vi polysaccharide bio 30.8 4E+02 0.0086 23.9 9.6 55 111-167 44-98 (578)
485 smart00748 HEPN Higher Eukaryt 30.4 1E+02 0.0022 20.4 3.9 31 59-89 3-33 (113)
486 PF10938 YfdX: YfdX protein; 30.0 2.1E+02 0.0046 20.5 7.2 108 62-171 4-145 (155)
487 COG5091 SGT1 Suppressor of G2 29.9 94 0.002 24.9 3.9 63 112-175 43-111 (368)
488 KOG3540 Beta amyloid precursor 29.6 3.9E+02 0.0083 23.4 11.9 87 105-192 309-402 (615)
489 cd00215 PTS_IIA_lac PTS_IIA, P 29.5 1.5E+02 0.0033 19.5 4.4 35 57-91 12-46 (97)
490 PHA02537 M terminase endonucle 29.5 2.7E+02 0.0059 21.6 7.8 38 105-142 165-211 (230)
491 KOG3807 Predicted membrane pro 29.0 3.5E+02 0.0075 22.7 10.5 30 111-140 277-306 (556)
492 KOG2997 F-box protein FBX9 [Ge 28.9 1.4E+02 0.0031 24.5 4.8 33 109-141 19-51 (366)
493 TIGR00823 EIIA-LAC phosphotran 28.8 1.6E+02 0.0034 19.5 4.4 35 57-91 14-48 (99)
494 PF07980 SusD: SusD family; I 28.6 1.1E+02 0.0023 23.4 4.3 30 143-172 133-162 (266)
495 KOG2581 26S proteasome regulat 28.6 3.8E+02 0.0082 23.0 11.2 37 58-94 245-281 (493)
496 PF04190 DUF410: Protein of un 28.5 2.9E+02 0.0064 21.7 9.4 64 109-172 90-170 (260)
497 PRK09591 celC cellobiose phosp 28.4 1.6E+02 0.0035 19.7 4.4 34 58-91 18-51 (104)
498 KOG2758 Translation initiation 28.4 3.5E+02 0.0075 22.5 8.0 78 87-172 115-196 (432)
499 PF10938 YfdX: YfdX protein; 28.2 2.3E+02 0.005 20.4 8.2 70 60-137 75-145 (155)
500 KOG1464 COP9 signalosome, subu 28.1 3.3E+02 0.0071 22.1 7.9 108 61-172 66-174 (440)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=269.37 Aligned_cols=208 Identities=43% Similarity=0.732 Sum_probs=201.8
Q ss_pred CCCCccEEEEEeCccc-cc-ccCCcCCCCCCceEEEEEEEcccc-cCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHH
Q 028390 2 TMKKEEQATVTISAEY-LC-SHEVSELVSADSVLHYEVTLIDFT-KEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWR 78 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~-~~~~~~~ip~~~~l~~~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~ 78 (209)
.|++||+|.|+|+|+| || ..++++.||||+++.|+|+|+.+. +....|.+...+++..+...++.|+.+|+.|+|..
T Consensus 147 ~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~ 226 (397)
T KOG0543|consen 147 MMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKL 226 (397)
T ss_pred hcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHH
Confidence 6999999999999999 99 445899999999999999999999 88889999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028390 79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 158 (209)
Q Consensus 79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 158 (209)
|...|.+|+.+++.+..+++++......+...+++|+|.|+++++.|..|+..|+++|.++|+|++++||+|.|+..+|+
T Consensus 227 A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e 306 (397)
T KOG0543|consen 227 AKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE 306 (397)
T ss_pred HHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 028390 159 LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 209 (209)
Q Consensus 159 ~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (209)
++.|..+|+++++++|+|..+...+..|.++++++..++++.|++||+.++
T Consensus 307 ~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 307 YDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999998764
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.1e-23 Score=152.83 Aligned_cols=177 Identities=28% Similarity=0.423 Sum_probs=163.4
Q ss_pred ceEEEEEEEcccc----cCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc---CCCChHHHHH
Q 028390 31 SVLHYEVTLIDFT----KEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---HSFTDDEKHQ 103 (209)
Q Consensus 31 ~~l~~~~~l~~~~----~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~---~~~~~~~~~~ 103 (209)
.+|.|.++|..+. ...+.|.++.+++.+....+..+||.+|+.|+|.+|...|..||..+.+- ...++.+|.+
T Consensus 145 qpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~e 224 (329)
T KOG0545|consen 145 QPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLE 224 (329)
T ss_pred CceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Confidence 5799999999887 35778999999999999999999999999999999999999999776542 2234588999
Q ss_pred HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-HHHHHH
Q 028390 104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLV 182 (209)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~ 182 (209)
++.....++.|.++|++..|+|-++++.|+.++..+|.|.+|||++|.+.....+.++|..+|.++++++|.- +.+.+.
T Consensus 225 Ldk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 225 LDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred HHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 028390 183 YMELKDKQREYAKYQAEIFGTMLSK 207 (209)
Q Consensus 183 l~~l~~~~~~~~~~~~~~~~~~~~~ 207 (209)
+..+..++.+.+..++-.|++||+.
T Consensus 305 lr~le~r~~ek~~edr~~~~kmfs~ 329 (329)
T KOG0545|consen 305 LRLLENRMAEKQEEDRLRCRKMFSQ 329 (329)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 9999999999999999999999974
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=155.86 Aligned_cols=125 Identities=30% Similarity=0.359 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
+....|+.++.+|+.+++.++|.+|+..|++||.+.|.++. +|.|+|.+|.++|+|+.|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---------------yycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---------------YYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---------------HHHHHHHHHHHhcchHHHHHHHHH
Confidence 67788999999999999999999999999999999988765 699999999999999999999999
Q ss_pred HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
+|.+||.++++|.|+|.+|+.+|++.+|+..|+++++++|+|+..+..|..++..+.+..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999888776544
No 4
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=4e-20 Score=134.96 Aligned_cols=134 Identities=33% Similarity=0.422 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
.+..+..++..|+.+|..|+|.+|...|..||.+.|..+. ..+..+|.|+|.|.++++.|+.|+..|.++
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3667889999999999999999999999999999887664 567889999999999999999999999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028390 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE 199 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 199 (209)
|+++|.+.+++.|+|.+|.++..+++|+.+|+++++++|....+...+.++-..+....++.+.
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887776664
No 5
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.2e-17 Score=135.59 Aligned_cols=118 Identities=34% Similarity=0.433 Sum_probs=111.7
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+...+..|+.+|+.|+|..|+.+|++||...|+++. +|.|+|.||.+++.+..|+.+|..+++
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------------lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------------LYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33777889999999999999999999999999887765 799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
++|++.++|+|.|.|+..+.+|++|...|.++++++|++.++...+.+|...+
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998865
No 6
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.5e-17 Score=132.14 Aligned_cols=127 Identities=34% Similarity=0.426 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028390 50 KMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 129 (209)
Q Consensus 50 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 129 (209)
.+..+++.+.+..++.+||.+|+.|.|++||.+|++||.+.|+.+.| |.|++.||..+|+|++.+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~Vi 169 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKVI 169 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHHH
Confidence 34677889999999999999999999999999999999999887764 999999999999999999
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Q 028390 130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~~l~~l~~~~~~ 192 (209)
++|+++++++|+++++++||+.++..+|++++|+.+..- +-+.. +|..+.-.+.++...+..
T Consensus 170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a~ 233 (606)
T KOG0547|consen 170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQAM 233 (606)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754 33322 344444444554444433
No 7
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.70 E-value=4.2e-16 Score=127.54 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=110.1
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.++..|..+|..|+|..|+..|.+||.+.|... .+|.++|.++..+|++++|+.++.+++.++|+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---------------ELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 467899999999999999999999999977654 47999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
+..+++++|.+++.+|++++|+..|+++++++|+++.+...+..|..++...
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999888653
No 8
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=7.5e-16 Score=110.50 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=106.5
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+...|..++..|++++|+..|..++...|.+. .++.++|.++..+|++++|+..|.+++.++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---------------RAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 55689999999999999999999999877654 479999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+.+++++|.++..+|++++|+..|.+++.+.|+++........+...++.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888887766654
No 9
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.68 E-value=2.7e-16 Score=123.65 Aligned_cols=120 Identities=25% Similarity=0.368 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
++.+..+..++++|+.||++|.|++|+.+|.+++...|..+. .+.|+|.+|++++.|..|..+|+
T Consensus 91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---------------~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---------------YHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---------------chhhHHHHHHHHHHHHHHHHhHH
Confidence 445666777899999999999999999999999999887665 58999999999999999999999
Q ss_pred HHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390 134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 134 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
.|+.+|..+.++|.|++.+...+|...+|..+++.++.|.|++.+..+.++.+..
T Consensus 156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999998888888765
No 10
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.1e-16 Score=123.83 Aligned_cols=128 Identities=25% Similarity=0.359 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
..+....+++.|+..|+.|.|..|.+.|+.||.++|+... .++.+|.|+|.+...+|+..+|+.+|+.+
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----------~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----------TNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----------hhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 3566788999999999999999999999999999887554 36789999999999999999999999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
+.+||...+++.++|.|+..+++|++|+++|++++++..+ .+.++.+......+++.+.
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887 7888888888777776553
No 11
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.5e-16 Score=126.36 Aligned_cols=113 Identities=24% Similarity=0.287 Sum_probs=107.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+...+++|+..|..|+|+.|+.+|+.||.+.|... .+|.|++.+|.++|+|++|+++..+.++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh---------------vlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH---------------VLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc---------------chhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999988743 489999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
|+|+++|.++|.++..+|+|++|+..|.++++.+|+|+.....+....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999999999888
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=6.2e-15 Score=128.99 Aligned_cols=136 Identities=25% Similarity=0.280 Sum_probs=119.4
Q ss_pred cCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 028390 24 SELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ 103 (209)
Q Consensus 24 ~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~ 103 (209)
.+.+|++..+....++..+. ....+.++.+++...+..+++.|+.+++.|+|++|+..|.++|.+.|+ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~--------- 160 (615)
T TIGR00990 92 KSTAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P--------- 160 (615)
T ss_pred cCCCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h---------
Confidence 45567777777777666554 455688888889999999999999999999999999999999998764 2
Q ss_pred HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
..|.|+|.||..+|+|++|+.+|+++++++|++.++++++|.+|..+|++++|+.+|..+..+++.+
T Consensus 161 ------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 161 ------VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred ------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3699999999999999999999999999999999999999999999999999999998888776644
No 13
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.1e-15 Score=114.58 Aligned_cols=108 Identities=28% Similarity=0.385 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...|..+++.||.+|+.++|..|+..|+++|.....+++ +++.+|+|+|.|.+.+|+|..|+.+|..++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999998766665 578999999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
.++|.+.++++|-|.|++.+..+..|..+++..+.++-+
T Consensus 147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999999888777766533
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.61 E-value=3.7e-14 Score=100.34 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=106.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+......|..++..|++++|+..|.+++...|..+ .++.++|.++..+|++++|+..+..++..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44567899999999999999999999999876644 479999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
|.++..++.+|.++...|+++.|+..|+++++++|++.........+...++
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988877777766543
No 15
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.60 E-value=5.7e-14 Score=100.20 Aligned_cols=109 Identities=8% Similarity=0.070 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
.+..+.+...|..++..|++++|...|.-.+.++|.... .|+++|.|+..+|+|++|+..|.+++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------------y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------------YWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345667889999999999999999999999999777554 69999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
.++|+++.++++.|.|+..+|+.+.|...|+.++....+++.-.
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~ 140 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQ 140 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence 99999999999999999999999999999999999875444433
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=2.7e-13 Score=108.54 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=99.2
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..+...|++..|+..|.+++.+.|+.+ .+|+++|.++..+|++++|+..++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999977654 4799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
++|++..+++++|.+++..|++++|+..++++++++|+++.
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999973
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.50 E-value=1.1e-13 Score=116.13 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=108.3
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
...++.+.|+.+-..+.|++|+..|.+|+.+-|.. +.++-|+|.+|..+|..+-||..|.++|++
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------------AVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------------hhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 35667777888777788888888888877765543 457888888888888888999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
+|+.+.+|.++|.++-..|+..+|+.+|++++.+.|+++++...|..++..+...+...+ .|.+.|.
T Consensus 316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~ 382 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALE 382 (966)
T ss_pred CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHh
Confidence 999999999999999999999999999999999999999999999999988888877654 6666543
No 18
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=1.8e-12 Score=97.82 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=98.0
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHH-HhhcC--HHHHHHHHHHH
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK-LKLED--YSETSSLCTKV 135 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~a 135 (209)
.+..+...|..+...|+++.|+..|.+++.+.|+++. ++.++|.++ ...|+ +++|+..++++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------------~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------------LYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3566889999999999999999999999999887654 789999975 67787 59999999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
++.+|+++.+++.+|.++...|++++|+..++++++++|.+.+-...+
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999999999999999999999999999999998876554444
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.47 E-value=2.2e-13 Score=114.29 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+.+.|..+-++|.+++|+.+|+.||++.|. .+++|+|+|.+|-.+|+...|++.|++||
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~---------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT---------------FADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch---------------HHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 334555666666666666666666666666666443 46789999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
.++|...+++.++|.+|...|+..+|++.|+.++++.|+.+++-..+..+..-+-.
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999888888887766543
No 20
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.47 E-value=2.9e-12 Score=88.18 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=98.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+...|..++..|++++|+..|.+++...|..+. ...+++.+|.++...|+++.|+..+..++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999998765432 134689999999999999999999999999988
Q ss_pred Cc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390 141 LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 141 ~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
++ ..+++.+|.++..+|++++|...+.+++...|+++.+.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 85 678999999999999999999999999999999987766544
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=2.4e-12 Score=112.84 Aligned_cols=138 Identities=15% Similarity=0.134 Sum_probs=80.1
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHH-------HHHHHHHHHHHHhHHHHH
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAAC 118 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~ 118 (209)
..+..+...|..++..|++++|+..|.+++.+.|...... .++ .-...+....++.++|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455677888899999999999999999998866533210 000 001111223455555555
Q ss_pred HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
++.+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++...|+++.+...+..+....+...+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555444433
No 22
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.46 E-value=3.6e-13 Score=84.21 Aligned_cols=66 Identities=30% Similarity=0.475 Sum_probs=63.8
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCC
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDP 174 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p 174 (209)
+.+|.++|.+++..|+|++|+..|.++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4579999999999999999999999999999999999999999999999 79999999999999998
No 23
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.42 E-value=5.1e-13 Score=109.30 Aligned_cols=120 Identities=24% Similarity=0.277 Sum_probs=113.3
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..++++|+.++..+.|+.|+..|.+||++.|+... .+.+++..+++.++|..|+.++.++++++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---------------~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---------------YFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee---------------eechhhhhheeechhhhHHHHHHhhhhcC
Confidence 456779999999999999999999999999888766 48999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
|...++|+++|.+...++++.+|..+|++...+.|+++.+.+.+..|...+++.+
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998887754
No 24
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.6e-12 Score=97.76 Aligned_cols=114 Identities=28% Similarity=0.346 Sum_probs=101.6
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+++.|+.+|..+.|..|+..|.+||.+.|..+. .|.|++.||+++++|+.+..+|.+++++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---------------Y~tnralchlk~~~~~~v~~dcrralql 73 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---------------YYTNRALCHLKLKHWEPVEEDCRRALQL 73 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch---------------hhhhHHHHHHHhhhhhhhhhhHHHHHhc
Confidence 4677899999999999999999999999999887655 5999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHH
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNNRVVKLVYMELK 187 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-----p~~~~~~~~l~~l~ 187 (209)
+|+.++++|-+|.++.....|+.|+..+.++..+. |--.++.+.|..++
T Consensus 74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999997762 22246666666654
No 25
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.38 E-value=3e-11 Score=89.20 Aligned_cols=111 Identities=25% Similarity=0.242 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
......+..+...|..+...|++++|+.+|.+++...+.... ...++.++|.++..+|++++|+..+.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345566778899999999999999999999999987654321 24579999999999999999999999
Q ss_pred HHhhhCCCchHHHHHHHHHHhccCC--------------HHHHHHHHHHHHhcCCCC
Q 028390 134 KVLELEPLNVKALYRRSQAHLKTSE--------------LEKAEADIKRALTIDPNN 176 (209)
Q Consensus 134 ~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~l~p~~ 176 (209)
+++...|.+..++..+|.++..+|+ +..|...+++++.++|++
T Consensus 97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999999988 678888888888889987
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8.6e-12 Score=101.61 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=103.2
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 146 (209)
||-+--+++.++|+.+|+.|++++|... .+|.-+|.=|..+++...|++.|.+|++++|.+..+|
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~---------------~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYL---------------SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchh---------------HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 5555567889999999999999987754 3788899999999999999999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
|.+|++|.-++-..-|+-+|++|+++-|+|+-++..|..|+..+....+..+ =|++.
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykra 458 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRA 458 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHH
Confidence 9999999988888889999999999999999999999999888887776644 55554
No 27
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=9.8e-12 Score=98.19 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=103.9
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+....+.|+.++..|++.+|+..|..||+.+|+. -.+++.+|.+|+.+|+...|+.+++++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 346778899999999999999999999999987763 34789999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK---LVYMELKDKQR 191 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~---~~l~~l~~~~~ 191 (209)
+.|+...+...+|.++.++|+++.|..+|+.++.-+|++.... ..+..+.+.+.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV 157 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999765444 44444444443
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.7e-11 Score=97.97 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=120.0
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
+....+--.|..+...+....|+..|+.||+++|.+.. +|+.+|+.|-.++...=|+-++++|+.
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---------------AWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---------------AWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---------------HHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 33556777899999999999999999999999988765 799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
+.|+++..|..+|.||.++++.++|+..|++++.....+..+...++.+.++++..++. ...|.+-+.
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA-a~~yek~v~ 494 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA-AQYYEKYVE 494 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999998765 335555443
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=4.2e-12 Score=107.10 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=98.2
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC---------CChHHHHH----------HHHHHHHHHhHHHHHH
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS---------FTDDEKHQ----------ANGLRLSCYLNNAACK 119 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~---------~~~~~~~~----------~~~~~~~~~~~~a~~~ 119 (209)
..+.|...||.+--+++++.|++.|.+|++++|...- ...++.+. .++-+-.+|+.+|.+|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 3567889999999999999999999999999774211 00122211 1233334677777777
Q ss_pred HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
+++++++.|.-++.+|++++|.+.-..+..|..+.++|+.++|+..|++|+.++|.|+-.......+...+..+.+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777776666555444
No 30
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.33 E-value=2.5e-11 Score=86.98 Aligned_cols=100 Identities=11% Similarity=-0.025 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH
Q 028390 80 SKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL 159 (209)
Q Consensus 80 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~ 159 (209)
...|.+++.+.|+ .+.++|.++...|++++|+..|.+++.++|.+..+++.+|.++..+|++
T Consensus 13 ~~~~~~al~~~p~------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPE------------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 3568888887665 2567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390 160 EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 160 ~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
++|+..|.+++.++|+++.++..+..+...+++..+..
T Consensus 75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999998887776653
No 31
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.33 E-value=1.6e-11 Score=96.96 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
+++.+....+.+......++|.++++.+.+.++..|..+.. ....+..++.|+..-+++.+||+.|.++
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHHHH
Confidence 34556677788888999999999999999999987764443 2335678899999999999999999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
|+++|+++.+++.+|.+|.--..|+.|+.+|++|.+++|+|..+...+.+.++..++.. +..|.|.++
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~---kRDYYKILG 401 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG---KRDYYKILG 401 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc---cchHHHHhh
Confidence 99999999999999999999999999999999999999999999999998877665543 445555544
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.32 E-value=5.9e-11 Score=107.92 Aligned_cols=119 Identities=5% Similarity=0.003 Sum_probs=81.5
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..+.+.|++++|+..|.+++.+.|+.+ .++.++|.++...|++++|+..+.++++++|+
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 445566666666666666666666666655533 35777777777777777777777777777777
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
++.+++++|.++..+|++++|+..|+++++++|++..+......+..+...++.
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence 777777777777777777777777777777777776666666655554444443
No 33
>PRK15331 chaperone protein SicA; Provisional
Probab=99.32 E-value=4.8e-11 Score=85.64 Aligned_cols=119 Identities=8% Similarity=0.072 Sum_probs=102.4
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...+.....|..+|..|++++|...|.-.+.+.+.+++ .+..+|.|+..+++|++|+..|..+..
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------------YTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999888776654 589999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
++++++...|..|.||..+|+.+.|...|..++. .|.+..+...-....+.+..
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999998 57766665544444444433
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.31 E-value=2.1e-10 Score=88.67 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+...|..++..|+++.|+..|.+++...|..+. ...++..+|.++...|++++|+..+.+++
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334667789999999999999999999999998776543 23578999999999999999999999999
Q ss_pred hhCCCchH---HHHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 137 ELEPLNVK---ALYRRSQAHLKT--------SELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 137 ~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+..|+++. +++.+|.++... |+++.|+..|++++..+|++......+..+
T Consensus 98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 99998876 799999999987 889999999999999999998776555444
No 35
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.30 E-value=1.3e-11 Score=76.11 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
.+|..++..|+|++|+..++.++..+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999985
No 36
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.30 E-value=2.1e-10 Score=84.29 Aligned_cols=110 Identities=18% Similarity=0.136 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
....+..+...|..+...|++++|+..|.+++.+.+.... ...++.++|.++...|++++|+..+.++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3446778899999999999999999999999998654221 2457999999999999999999999999
Q ss_pred hhhCCCchHHHHHHHHHHh-------ccCCHH-------HHHHHHHHHHhcCCCCH
Q 028390 136 LELEPLNVKALYRRSQAHL-------KTSELE-------KAEADIKRALTIDPNNR 177 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~-------~~~~~~-------~A~~~~~~a~~l~p~~~ 177 (209)
+.++|.+..++..+|.++. .+|+++ +|...+++++..+|.+.
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999998 777877 55566666777788654
No 37
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.29 E-value=1.3e-11 Score=80.29 Aligned_cols=83 Identities=29% Similarity=0.378 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 152 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 152 (209)
.|+|+.|+..|.+++...|.++ ....+.++|.|++..|+|++|+..+++ +..+|.+....+.+|.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 6899999999999999987521 134678899999999999999999999 88999999999999999
Q ss_pred HhccCCHHHHHHHHHHH
Q 028390 153 HLKTSELEKAEADIKRA 169 (209)
Q Consensus 153 ~~~~~~~~~A~~~~~~a 169 (209)
+..+|++++|+..|+++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 38
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=4.9e-11 Score=77.32 Aligned_cols=99 Identities=36% Similarity=0.443 Sum_probs=89.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..++..|++.+|+..+.+++...|..+ .++..+|.++...+++++|+..+..++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 356789999999999999999999998765532 46899999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
+..+++.+|.++...|+++.|...+.+++..+|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999988874
No 39
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.28 E-value=1.1e-10 Score=88.10 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=103.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 152 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 152 (209)
.++.++++..+.+++...|++. ..|..+|.+|..+|++++|+..|.+++.++|++..+++.+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~---------------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5667888888888888876654 4799999999999999999999999999999999999999998
Q ss_pred H-hccCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390 153 H-LKTSE--LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 153 ~-~~~~~--~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
+ ...|+ +++|...++++++++|++..+...+..+......+.+... .|.+++.
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~ 172 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVLD 172 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence 5 67787 5999999999999999999999999999998888876644 6666654
No 40
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.2e-11 Score=97.73 Aligned_cols=152 Identities=27% Similarity=0.342 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh---HH-HHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---DE-KHQANGLRLSCYLNNAACKLKLEDYSETSS 130 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 130 (209)
.........++.|+..+++++|..|...|.++++.....+.... ++ ......+...++.|++.|-++.+.+..|+.
T Consensus 217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence 34566777889999999999999999999999998774222211 11 234667788889999999999999999999
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390 131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
.+..+++.++...+++|+++.++..+.+++.|+.+++.+....|++..+...+..+...+.++..++++.+.+||+
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=5.2e-10 Score=84.95 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=99.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHHH-HHH--------HHHHHHHHhHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDEK-HQA--------NGLRLSCYLNNAAC 118 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~~-~~~--------~~~~~~~~~~~a~~ 118 (209)
...+...|..++..|+++.|+..|.+++...|..+... .++. ... .......+.++|.+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 45566778888888888888888888887755432210 0000 000 01123467788889
Q ss_pred HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
+...|++++|+..+.+++..+|++..+++.+|.++...|++++|...+++++.+.|.++.....+..+....+....
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999998888889999999999999999999999988888887777777777665555444
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.6e-11 Score=97.80 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=99.6
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
..+.|...|..+.|.+|+.+|..++...++.... ...+...++|+|.++.+++.+++|+..++++|.+.|.+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 5577777888888888888888887544332210 01256679999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
+.++..+|.+|..+|+++.|+..|.+++-+.|+|..+...|...-+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888877765443
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.3e-10 Score=86.05 Aligned_cols=137 Identities=19% Similarity=0.138 Sum_probs=79.8
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHHH-------HHHHHHHHHHHhHHHHH
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDEK-------HQANGLRLSCYLNNAAC 118 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~a~~ 118 (209)
..+..+...|..++..|++++|+..|.+++...|...... .++. -...+....++.++|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 3467778899999999999999999999998865532210 0000 00011112344455555
Q ss_pred HHhhcCHHHHHHHHHHHhhhC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 119 KLKLEDYSETSSLCTKVLELE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 119 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
+...|++++|+..+.+++... +.....++.+|.++...|++++|...+.+++..+|++......+..+....++..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 555555555555555555432 2334455556666666666666666666666666666555555555555444443
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.8e-10 Score=94.63 Aligned_cols=146 Identities=17% Similarity=0.230 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------h------HHHHHHHHHHHHHHhHHHH
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------D------DEKHQANGLRLSCYLNNAA 117 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~~a~ 117 (209)
...+..+.-.|.-+|-.|++-.|...+.++|.+.+...... . .+..++++....+|+.+|+
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 34466777788888888888888888888888766544310 0 1112234444556777777
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
+++-+++|++|+.+|++++.++|.++-++..++-+.+++++++++...|+.+.+..|+.+++....+.+.-...++.+..
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777766654
Q ss_pred HHHHHh
Q 028390 198 AEIFGT 203 (209)
Q Consensus 198 ~~~~~~ 203 (209)
+ .|.+
T Consensus 483 k-~YD~ 487 (606)
T KOG0547|consen 483 K-QYDK 487 (606)
T ss_pred H-HHHH
Confidence 4 3443
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=2e-10 Score=99.52 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 152 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 152 (209)
.+++++|+..+.+|+.+.|.++. ++..+|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQ---------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455555555555555443322 344555555555555555555555555555555555555555
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390 153 HLKTSELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 153 ~~~~~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
+...|++++|+..++++++++|.++.
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 55555555555555555555555443
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.24 E-value=2.5e-10 Score=103.91 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=98.7
Q ss_pred HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ 151 (209)
Q Consensus 72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 151 (209)
..|++++|+..|.+++...|+ ..++.++|.++.++|++++|+..+.+++.++|+++.+++++|.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 336666666666666665442 3478999999999999999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 152 AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 152 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
++...|++++|+..|+++++++|+++.+...+..+...+++...... .|.+.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~A 703 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLV 703 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999988888776644 44444
No 47
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.24 E-value=5.8e-10 Score=87.48 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=98.6
Q ss_pred HHHHHHhHHH-HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 61 ERKKHDGNLL-FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 61 ~~~~~~g~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+..|..+ +..|+|++|+..|...+...|+..- ...+++.+|.+|+..|++++|+..|.+++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3446677766 6679999999999999999887542 24578999999999999999999999999988
Q ss_pred CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 140 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 140 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
|++ +.+++.+|.++..+|+++.|...|+++++..|++..+.....++
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 875 78899999999999999999999999999999998777665555
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.24 E-value=2.4e-11 Score=75.79 Aligned_cols=66 Identities=30% Similarity=0.424 Sum_probs=61.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhh
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~ 138 (209)
+..+...|..++..|+|++|+..|.+++.+.|+. ..++.++|.|+..+| ++++|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 6678899999999999999999999999997764 458999999999999 799999999999999
Q ss_pred CC
Q 028390 139 EP 140 (209)
Q Consensus 139 ~p 140 (209)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 98
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=2.3e-10 Score=85.83 Aligned_cols=136 Identities=21% Similarity=0.131 Sum_probs=82.8
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------h----HH---HHHHHHHHHHHHhHHHHH
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------D----DE---KHQANGLRLSCYLNNAAC 118 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~----~~---~~~~~~~~~~~~~~~a~~ 118 (209)
..+......|..++..|++..|...+.+||+.+|+....+ + +. --.+.+-...+++|-|.-
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 3355556677777777777777777777777665543210 0 00 001112223356666666
Q ss_pred HHhhcCHHHHHHHHHHHhhhC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390 119 KLKLEDYSETSSLCTKVLELE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 119 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
...+|+|++|...+++|+.-. +....++-++|.|..+.|+++.|..+|+++++++|+++.....+....-.-.++
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 666666666666666665431 333566777788888888888888888888888888877777776665444333
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.22 E-value=7.1e-11 Score=93.77 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=97.3
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..+.+.|++++|+..|.+++...|.++. +...++.++...|+++++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------------ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 445778888888999999999999999999887543 67888888999999999888888888887
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
|.++..+..+|.++..+|++++|+.+|++++..+|+|+.+...++.+....+...+... .+.+.+
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~ 275 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQAL 275 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 88888889999999999999999999999999999999999999999988887776533 444443
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=2.2e-10 Score=99.19 Aligned_cols=113 Identities=9% Similarity=0.019 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc
Q 028390 76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK 155 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 155 (209)
+++|+..|.+|+.+.|..+ .+++++|.++...|++++|+..++++++++|.++.+++.++.+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISA---------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 5678889999999877654 3789999999999999999999999999999998888888888888
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 156 TSELEKAEADIKRALTID-PNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 156 ~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
.|++++|+..+++++... |+++.....+..+...+++..+... .+.++
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~-~~~~~ 467 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK-LTKEI 467 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH-HHHHh
Confidence 999999999999999875 7888888889998887777666543 34443
No 52
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.21 E-value=4e-10 Score=85.97 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=111.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|...+..|+|..|+..++++..+.|++.. +|+.+|.+|.+.|++++|...|.+++++.|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------------AWNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------------hhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 3445999999999999999999999999888765 6999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
.+.+..++|..|+-.|+++.|...+..+...-+.+..+...+..+-..+..+...++
T Consensus 167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 999999999999999999999999999999999999999999988777666655443
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=6.6e-11 Score=100.02 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=119.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH
Q 028390 47 PFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126 (209)
Q Consensus 47 ~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 126 (209)
..+..+..-...-..+|+-.|..+.++++++.|..+|.+|+.+.|.... +..-+|.++.++|+.+
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---------------i~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---------------ILCHIGRIQHQLKRKD 540 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---------------HHhhhhHHHHHhhhhh
Confidence 3333333344556788999999999999999999999999999887554 6788999999999999
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 127 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+|+..+++|+.+||.++-..|.+|.+++.++++++|+..+++.-++.|++..+...+.++..+++.....
T Consensus 541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988765443
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.21 E-value=4.6e-10 Score=98.73 Aligned_cols=130 Identities=6% Similarity=-0.044 Sum_probs=117.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..++..|......|.+++|...+..++++.|+. ..+..+++.+..+++++++|+..+++++..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 5668889999999999999999999999997774 4589999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
|++..+++.+|.++.++|++++|+..|++++..+|+++.++-.+..+.....+..... ..|.+.+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~ 215 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGL 215 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877776653 3555544
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=8e-10 Score=82.99 Aligned_cols=63 Identities=24% Similarity=0.162 Sum_probs=32.2
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
..+|..+|.+|.++|+.+.|-+.|.+|+.++|++.+++.+.|--++.+|++++|.+.|++|+.
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 344455555555555555555555555555555555555555555555555555555555543
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=3.8e-10 Score=90.39 Aligned_cols=112 Identities=11% Similarity=-0.033 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390 74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH 153 (209)
Q Consensus 74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 153 (209)
+..+.++..++++|...+-++. .....|+++|.++..+|++++|+..+.++++++|+++.+++.+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~-----------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDE-----------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcH-----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4667788888888864432222 23567999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 154 LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 154 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
..+|+++.|+..|+++++++|++..+...+..+....+...+.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999888887666555544
No 57
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.19 E-value=4.4e-10 Score=99.12 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=90.9
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHH----HHHHHHHHhhhCCC
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE----TSSLCTKVLELEPL 141 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~ 141 (209)
.|..+...|++++|+..|.+++...|.+ ..++.++|.++..+|++++ |+..+++++.++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 4566777888888888888888775543 3467788888888888875 78888888888888
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+..++..+|.++...|++++|+..+++++.++|+++.+...+..+....++..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888888888888888888888888887777666665544
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=2.5e-10 Score=80.57 Aligned_cols=101 Identities=15% Similarity=0.043 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHH
Q 028390 81 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE 160 (209)
Q Consensus 81 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~ 160 (209)
..|.+++...|.. ..+...+|.+++..|++++|+..++.++..+|.++.+++++|.++..+|+++
T Consensus 4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 3567777765553 3468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 161 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 161 ~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+|...+++++.++|+++.....+..+....++....
T Consensus 69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999998888776654
No 59
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.17 E-value=2.3e-10 Score=72.14 Aligned_cols=71 Identities=25% Similarity=0.415 Sum_probs=65.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 116 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
..+|+..++|+.|+..+++++.++|+++..++.+|.++..+|++.+|..+|.++++..|+++.+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999999999999999998887765543
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=6.4e-11 Score=98.74 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=91.9
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
....|..|+-.|+|++|+.+|+.||...|.+.. +|+.+|.+...-.+.++|+..|++|+++.|..
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---------------lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---------------LWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---------------HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 446899999999999999999999999887654 79999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
+.+.|++|.+++.+|.|++|..+|-.|+.+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998654
No 61
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.16 E-value=9.7e-10 Score=96.99 Aligned_cols=121 Identities=8% Similarity=0.001 Sum_probs=101.7
Q ss_pred HHHHHHHhHHHHHcCCHHH----HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWR----ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
...+...|..++..|++++ |+..|.+++...|++. .++.++|.++...|++++|+..++++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445678999999999986 8999999999877643 47899999999999999999999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
+.++|++..+++.+|.++..+|++++|+..|++++..+|++......+..+........+
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999987665555555555544443
No 62
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.15 E-value=1.8e-09 Score=74.38 Aligned_cols=106 Identities=22% Similarity=0.133 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
...++....+--+|..+-..|+.+.|++.|.++|.+.|..++ +|+|+++.+...|+.++|+.+++
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---------------ayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERAS---------------AYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH---------------hhccHHHHHHHcCChHHHHHHHH
Confidence 345666777888999999999999999999999999988655 79999999999999999999999
Q ss_pred HHhhhCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390 134 KVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDP 174 (209)
Q Consensus 134 ~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p 174 (209)
+++++-.+. ..++..+|..|..+|+-+.|..+|+.+-++-.
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 999985443 56799999999999999999999999988753
No 63
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.14 E-value=1.2e-09 Score=98.35 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=93.9
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|..+...|++++|+..|.+++...|.+ ..++.+++.++...|+ .+|+..+.+++...|+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---------------AVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 34555666666677777777777776665443 3367788888888888 7788888888888888
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
++..+..+|.++...|++++|...|+++++++|.++.+...+..+....+...+. ...+.+|.
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 898 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL 898 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHh
Confidence 8888888888888888888888888888888888888888888877777666554 33555554
No 64
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=8.4e-09 Score=78.15 Aligned_cols=126 Identities=22% Similarity=0.192 Sum_probs=99.6
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...|..++..|+|.+|+..|.+.+...|..+- ...+.+.+|.++++.|+|+.|+..+++.+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999887654 3567899999999999999999999999999
Q ss_pred CCCc---hHHHHHHHHHHhccC-----------CHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHH
Q 028390 139 EPLN---VKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 139 ~p~~---~~~~~~~a~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l~~~~~~~~~~ 196 (209)
.|.+ ..++|.+|.+++.+. ...+|+..|+..+...|+++ .+...+..|..++.+.+-.
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 468999999987764 34589999999999999984 5566666777666555443
No 65
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.13 E-value=2.9e-09 Score=74.92 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=97.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|...+++|+|..|++.|.......|..+- ...+.+.++-+|++.++|++|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456778999999999999999999998887765443 34678999999999999999999999999999
Q ss_pred CCch---HHHHHHHHHHhccCC---------------HHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 140 PLNV---KALYRRSQAHLKTSE---------------LEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 140 p~~~---~~~~~~a~~~~~~~~---------------~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
|.++ -++|.+|.+++.+.. ...|...|+.++...|+++-+....
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9884 579999999999987 8899999999999999987665443
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=3.2e-09 Score=82.01 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=106.6
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--------cCHHHHHHHH
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------EDYSETSSLC 132 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~ 132 (209)
..+...|..++..|+++.|+..|.++++..|+.+.. ..+++.+|.++... |++++|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 456788999999999999999999999998876652 23678899999876 8999999999
Q ss_pred HHHhhhCCCchHHH-----------------HHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHH
Q 028390 133 TKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQRE 192 (209)
Q Consensus 133 ~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~~~ 192 (209)
++++..+|++..++ +.+|.++...|++.+|+..+.+++...|++ +.++..+..+...+++
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999985442 467899999999999999999999997765 5788888888888887
Q ss_pred HHHHHH
Q 028390 193 YAKYQA 198 (209)
Q Consensus 193 ~~~~~~ 198 (209)
..+...
T Consensus 219 ~~~A~~ 224 (235)
T TIGR03302 219 KDLAQD 224 (235)
T ss_pred HHHHHH
Confidence 766543
No 67
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.12 E-value=2.1e-10 Score=71.23 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=61.8
Q ss_pred HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+..|+|++|+..+.+++..+|++..+++.+|.||...|++++|...+++++..+|+++.+...++.|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998888776654
No 68
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=9.5e-11 Score=87.31 Aligned_cols=147 Identities=18% Similarity=0.113 Sum_probs=121.9
Q ss_pred cCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 028390 24 SELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ 103 (209)
Q Consensus 24 ~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~ 103 (209)
+..+|...++.-+|-+..+.+..-.-+++.+++ |..++++|+.+-..|-+..|...|++++.+.|..+.
T Consensus 32 ~~~~~~qp~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~-------- 100 (297)
T COG4785 32 VLAVPLQPTLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE-------- 100 (297)
T ss_pred eeeccCCccHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH--------
Confidence 445565556665666666655555556666555 677899999999999999999999999999877654
Q ss_pred HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
+++-+|..+...|+|+.|.+.++.++++||.+.-++.++|.+++..|++.-|..++.+-.+-+|+||--.-.+
T Consensus 101 -------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 101 -------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred -------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999997554444
Q ss_pred HHHHH
Q 028390 184 MELKD 188 (209)
Q Consensus 184 ~~l~~ 188 (209)
=.+..
T Consensus 174 Yl~E~ 178 (297)
T COG4785 174 YLNEQ 178 (297)
T ss_pred HHHHh
Confidence 43333
No 69
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.12 E-value=1e-08 Score=79.68 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=102.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..++..|+|+.|+..|.+.+...|..+ ....+...+|.+|+++++|++|+..+++.++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45577899999999999999999999999877643 245567899999999999999999999999999
Q ss_pred CCc---hHHHHHHHHHHhccC---------------C---HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHH
Q 028390 140 PLN---VKALYRRSQAHLKTS---------------E---LEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 140 p~~---~~~~~~~a~~~~~~~---------------~---~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~~~~~~ 195 (209)
|++ ..++|.+|.++..++ | ...|+..|+..+...|++ +++...+..|+.++.+.+-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 887 567999999876654 1 356889999999999987 4666667777777766554
Q ss_pred H
Q 028390 196 Y 196 (209)
Q Consensus 196 ~ 196 (209)
.
T Consensus 180 ~ 180 (243)
T PRK10866 180 S 180 (243)
T ss_pred H
Confidence 3
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.11 E-value=4.9e-09 Score=91.52 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=116.9
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..+...||.+|..|++++|...+.++|...|..+ .+|.-+|.||-.+|+.++|......|--+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---------------~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---------------IAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---------------hhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 367788999999999999999999999999877654 37999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (209)
+|.+...|.+++....++|.+..|.-+|.+|++.+|.+-...-..+.+.++..+...... .|.++|+-+
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~~~~ 271 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLLQLD 271 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHHhhC
Confidence 999999999999999999999999999999999999998888888888888877765543 777777654
No 71
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.11 E-value=3.8e-09 Score=81.56 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=102.5
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
..++.|..+++.|+|..|...|..-|.-.|...-. ..+++.+|.+++.+|+|+.|...|..+.+-.|+
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999998876542 468999999999999999999999999998877
Q ss_pred c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 142 N---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 142 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
+ +++++.+|.+...+|+.++|...|.++++-.|+.+.+......++
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~ 259 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK 259 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 6 678999999999999999999999999999999988877665553
No 72
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.10 E-value=3.2e-09 Score=95.50 Aligned_cols=123 Identities=27% Similarity=0.285 Sum_probs=101.2
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|++++|+..|.+++...|.... ++..+|.++...|++++|+..+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------------AKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566788999999999999999999999998765433 578888888888888888888888888
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
.+|.+..+++.+|.++...|++++|...|++++.++|+++.....+..+.-..++..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888888888888888888888888888877777776655554443
No 73
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.09 E-value=6.9e-09 Score=85.84 Aligned_cols=84 Identities=23% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKDK 189 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~l~~~ 189 (209)
.+.++|.++...|++++|+..+.++++.+|++..+++.+|.++...|++++|+..+++++..+|.+ ..+...+..+...
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 456777777788888888888888888888878888888888888888888888888888777765 3444455555544
Q ss_pred HHHHH
Q 028390 190 QREYA 194 (209)
Q Consensus 190 ~~~~~ 194 (209)
.++..
T Consensus 262 ~g~~~ 266 (389)
T PRK11788 262 LGDEA 266 (389)
T ss_pred cCCHH
Confidence 44433
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.09 E-value=5.9e-09 Score=86.24 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=80.0
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+...|..++..|++++|+..|.+++...|.. ..++..+|.++...|++++|+..+.+++..+|.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 4556667777788888888888777765442 2356777777777888888888888877777765
Q ss_pred -hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 143 -VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 143 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
..++..++.+|...|++++|...++++++..|++... ..+..+....++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~ 299 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE 299 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence 3456677777777788888888887777777766444 45555554444443
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.08 E-value=6.4e-09 Score=97.24 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=100.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHH-HHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK-HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
...+...|..++..|++++|+..|.+++...|..... ..+ ..+......+...+|.++...|++++|+..|.+++.+
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~--~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR--DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch--hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456677888888888888888888888776654321 001 1111122334466788999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
+|.+..+++.+|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887777653
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.06 E-value=3.5e-09 Score=99.00 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=107.8
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 144 (209)
..|..++..|++++|+..|.+++...|.++ .++..+|.++..+|++++|+..+.++++.+|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~---------------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDS---------------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999877654 47999999999999999999999999999998643
Q ss_pred --------------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 145 --------------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 145 --------------~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
....+|.++...|++++|+..|++++.++|++..+...+..+....++..+... .|.+.+
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL 412 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQAL 412 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 224568899999999999999999999999999999999999988877776644 455543
No 77
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.7e-09 Score=84.18 Aligned_cols=93 Identities=26% Similarity=0.245 Sum_probs=86.1
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+-+-|.-.++.++|.+|+..|++||.++|.++-.|++||.+|.++|.++.|+++++.++.+||....++..|..++-.+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 45667888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhh
Q 028390 192 EYAKYQAEIFGTML 205 (209)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (209)
++...... |+|.+
T Consensus 164 k~~~A~~a-ykKaL 176 (304)
T KOG0553|consen 164 KYEEAIEA-YKKAL 176 (304)
T ss_pred cHHHHHHH-HHhhh
Confidence 88887765 77764
No 78
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=6.5e-09 Score=83.86 Aligned_cols=115 Identities=13% Similarity=-0.052 Sum_probs=88.1
Q ss_pred HHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCH--HHHHHHHHHHhh
Q 028390 61 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY--SETSSLCTKVLE 137 (209)
Q Consensus 61 ~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~ 137 (209)
..+..+|..+...| ++.+|+..+.+++...|... .+|+.++.+..+++.. ++++..+.++++
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------------QIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 34555555555555 45666666666666555433 3688888888888764 678888889999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
.+|.|..+|..++.++..+|++++|+.++.++++.+|.|..++.....+...+
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988888887775443
No 79
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=4.6e-09 Score=94.31 Aligned_cols=113 Identities=9% Similarity=0.021 Sum_probs=103.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+...|..+...|++.+|+..|.+++...|..+. ++..++.++...|++++|+..+.+++..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------------YQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344778899999999999999999999998776543 67899999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
|++.. ++.+|.++...|++++|+..++++++++|+++.+...+..+..
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999888777654
No 80
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.01 E-value=8e-09 Score=73.93 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=84.2
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
....+.+|..+...|++++|...+..+..+||.+...|+++|.|+..+|++++|+..|.+++.++|+|+.....+..|.=
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHhh
Q 028390 189 KQREYAKYQAEIFGTM 204 (209)
Q Consensus 189 ~~~~~~~~~~~~~~~~ 204 (209)
.+++.... +..|+..
T Consensus 115 ~lG~~~~A-~~aF~~A 129 (157)
T PRK15363 115 ACDNVCYA-IKALKAV 129 (157)
T ss_pred HcCCHHHH-HHHHHHH
Confidence 77766644 3345443
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.4e-09 Score=83.39 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=112.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..++-+|..++..++.+.|+.+|+++|.+.|+... ....-...-....+...|.-.++.|.|..|.+.|..+|.++
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~---sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK---SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhh---HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 566788999999999999999999999999776432 11122223344567889999999999999999999999999
Q ss_pred CCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 140 PLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
|++ .+.|+++|.+...+|+..+|+.+.+.+++++|.-..+....+.|.-.+++.+..
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 567999999999999999999999999999999888888888887777766544
No 82
>PLN02789 farnesyltranstransferase
Probab=98.98 E-value=1.8e-08 Score=81.34 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=104.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhCCCchHHHHH
Q 028390 70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYR 148 (209)
Q Consensus 70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 148 (209)
+...+.+++|+..+.++|.+.|... .+|+.++.++..++ .+++++..+++++..+|.+..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~y---------------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNY---------------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 4567899999999999999987754 47999999999998 6899999999999999999999999
Q ss_pred HHHHHhccCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 149 RSQAHLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 149 ~a~~~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
++.++..+++. ++++.++.++++++|.|..++.....+...++...+ +-..|.+++
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I 169 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLL 169 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence 99999999974 788999999999999999999999999988877654 344555554
No 83
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.97 E-value=8.4e-10 Score=87.17 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHH
Q 028390 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 131 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 131 (209)
..++....+...+-.+..++..|.++.|+..|+.+|.+.|.. ..+|.+++.++++++++..|+.+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccCCchhhhh
Confidence 556778889999999999999999999999999999987664 45799999999999999999999
Q ss_pred HHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
|..++.++|+..+.|-.++.+...+|+|++|..++..+.+++=+ +.+...+..+....+
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ 229 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAG 229 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999998642 333344444444333
No 84
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.96 E-value=2e-08 Score=64.75 Aligned_cols=86 Identities=31% Similarity=0.354 Sum_probs=78.9
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
++.++|.++...|++++|+..+.++++..|.+..+++.+|.++...+++++|...+.+++.+.|.+......+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred HHHHHH
Q 028390 191 REYAKY 196 (209)
Q Consensus 191 ~~~~~~ 196 (209)
......
T Consensus 82 ~~~~~a 87 (100)
T cd00189 82 GKYEEA 87 (100)
T ss_pred HhHHHH
Confidence 665544
No 85
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.96 E-value=1.9e-08 Score=90.39 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=98.4
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
......|..+...|++++|+..+.+++...|... .++.++|.++...|++++|+..+++++.++|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 3445788889999999999999999999877754 4899999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028390 141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 182 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 182 (209)
++..+++.+|.++..+|++++|...++++++..|+++.+...
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999999999987653
No 86
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.95 E-value=1.5e-09 Score=66.80 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=57.1
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
..|..++..|+|++|+..|.+++...|.. ..++..+|.|+..+|++++|+..+++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57999999999999999999999987653 45899999999999999999999999999999875
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=4.2e-08 Score=86.50 Aligned_cols=117 Identities=10% Similarity=-0.042 Sum_probs=100.6
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+......+..+.+.+++++|+..+.+++...|+.. .+++.+|.++..+|++++|+..|++++.
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~---------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA---------------REILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3456678899999999999999999999999877754 4799999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKLVYMELKDK 189 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~l~~~ 189 (209)
.+|++..++..+|.++...|+.++|...|++++....+ .....+.+..+...
T Consensus 183 ~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (694)
T PRK15179 183 QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD 235 (694)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998654 33334444444433
No 88
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=5e-09 Score=66.84 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=57.2
Q ss_pred HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCC---chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPL---NVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
....++.++|.+|..+|+|++|+..+++++++ +++ ...+++++|.++..+|++++|+.++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999966 222 3668999999999999999999999999875
No 89
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=5.6e-09 Score=85.58 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=106.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+.+.|+..|..|++++|.+.|.+|+.-+... ..+++|+|..+-.+|+.++|+..+.+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999753332 4578999999999999999999999988888
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
-++..+++.++.+|..+.+...|+..+-++.++-|+++.++..|..++.+-....+
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 88999999999999999999999999999999999999999999999887655444
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-08 Score=86.96 Aligned_cols=104 Identities=22% Similarity=0.199 Sum_probs=82.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH--HHHHHh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS--LCTKVL 136 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al 136 (209)
.+..++..|..+..+|.+.+|...|..|+.++|++.. ....+|.++...|+..-|.. .+..++
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------------s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------------SMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------------HHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 3455677788888888888888888888888777654 46788888888887776666 888888
Q ss_pred hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390 137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
++||.++++||.+|.++..+|+.+.|..+|.-++++++.+|
T Consensus 748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 88888888888888888888888888888888888877765
No 91
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=1.7e-08 Score=74.14 Aligned_cols=112 Identities=14% Similarity=0.010 Sum_probs=88.1
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---h
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---V 143 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~ 143 (209)
.+.+|-.+.|..+...+...+...+. .....+++++|.++..+|++++|+..+.+++.+.|+. .
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 72 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSG-------------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRS 72 (168)
T ss_pred ccccccccccccchhhhhHhccCCch-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhH
Confidence 34444455566666666444332222 2246689999999999999999999999999887663 4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
.+++++|.++...|++++|+..+++++.++|.+......+..+...+.
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999998888888887443
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=8e-08 Score=79.29 Aligned_cols=125 Identities=17% Similarity=0.033 Sum_probs=111.0
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.....+..+...+..|+++.|+..++..+...|+++ .+....+.+++..++.++|++.+.+++.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------------~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------------YYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 344567788888999999999999999888766543 46788999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
+|+..-..+++|.+|.+.|++.+|+..++..+.-+|+|+..+..|++.+..+....+...
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 999999999999999999999999999999999999999999999999998877665443
No 93
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.87 E-value=5.6e-08 Score=85.72 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=103.5
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+.-.++.+|-+|+|..+...+..++..... .......++.+|.+|..+|+|++|..+|..++..+|+
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 3556677888888888888888888875422 2334567999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 142 N-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 142 ~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+ .-+++.+|+.|++.|+++.|..+|+++++..|++.+....+..++....
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 8 8889999999999999999999999999999999999999999998773
No 94
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=3.4e-08 Score=81.11 Aligned_cols=91 Identities=24% Similarity=0.302 Sum_probs=82.5
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+...|...+..|+|++|+..|.+++.++|++..+++.+|.+|..+|++++|+.++++++.++|+++.+...+..+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHh
Q 028390 192 EYAKYQAEIFGT 203 (209)
Q Consensus 192 ~~~~~~~~~~~~ 203 (209)
++..... .|.+
T Consensus 85 ~~~eA~~-~~~~ 95 (356)
T PLN03088 85 EYQTAKA-ALEK 95 (356)
T ss_pred CHHHHHH-HHHH
Confidence 8776544 4443
No 95
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.85 E-value=7.8e-08 Score=68.90 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=61.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+...+......+..+++..+...+...+.-.|..+ ....+.+.+|.+++..|++++|+..+..++...
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444555555555555555555555555433321 123345555555555666666666666555554
Q ss_pred CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 140 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 140 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
|+. ..+.+++|.++...|++++|+..+..+ .-.+-.+.+...+..|....++..
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHH
Confidence 332 334555556666666666665555432 122223444455555555444444
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=3.8e-08 Score=75.30 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=95.3
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 144 (209)
.....++..|+-+.+.....++....+.+. .+....|...+..|+|..|+..+.++..+.|+++.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~---------------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDR---------------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccH---------------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence 344555555666666666555544433322 24555899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++.-..-.-.+++..++
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999887766666655544
No 97
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.84 E-value=9.7e-08 Score=65.94 Aligned_cols=98 Identities=18% Similarity=-0.005 Sum_probs=85.3
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
..++.|..+-..|+.++|+..|.+++...... .....++..+|.++..+|++++|+..++.++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999999853222 234568999999999999999999999999998888
Q ss_pred ---chHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 142 ---NVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 142 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
+......++.++...|+.++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999977764
No 98
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.83 E-value=3.7e-08 Score=62.79 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=61.8
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...|..++..|+|++|+..|.+++.+....+.. ....+.++.++|.|+..+|++++|+..++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457788999999999999999999999999985444331 234578899999999999999999999999987
Q ss_pred h
Q 028390 138 L 138 (209)
Q Consensus 138 ~ 138 (209)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 6
No 99
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.83 E-value=7.5e-08 Score=65.91 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=75.8
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVY 183 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l 183 (209)
..++..|..+...|++++|+..+..++..+|++ ..+++.+|.++...|+++.|+..|+.++..+|++ +.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 368999999999999999999999999999876 5789999999999999999999999999999886 5667777
Q ss_pred HHHHHHHHHHHHH
Q 028390 184 MELKDKQREYAKY 196 (209)
Q Consensus 184 ~~l~~~~~~~~~~ 196 (209)
..+....+...+.
T Consensus 83 ~~~~~~~~~~~~A 95 (119)
T TIGR02795 83 GMSLQELGDKEKA 95 (119)
T ss_pred HHHHHHhCChHHH
Confidence 7777766655544
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.82 E-value=1.4e-07 Score=84.73 Aligned_cols=144 Identities=9% Similarity=0.031 Sum_probs=87.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-----------hHHH--HHH----H--HHHHHHHhHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-----------DDEK--HQA----N--GLRLSCYLNNAACKL 120 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-----------~~~~--~~~----~--~~~~~~~~~~a~~~~ 120 (209)
+...+..+...++.|++..|+..|.++++..|..+..- ..+. .-+ + +........+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 33567899999999999999999999999888764210 0000 000 0 111122333355666
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI 200 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 200 (209)
.+|+|++|+..|+++++.+|+++.+++.++.++...++.++|+..++++...+|.+... ..+..+........+ .-..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHHH
Confidence 67777777777777777777777777766777777777777777777777777765544 334444433222222 3344
Q ss_pred HHhhh
Q 028390 201 FGTML 205 (209)
Q Consensus 201 ~~~~~ 205 (209)
|++++
T Consensus 192 ~ekll 196 (822)
T PRK14574 192 SSEAV 196 (822)
T ss_pred HHHHH
Confidence 54444
No 101
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.81 E-value=1.3e-08 Score=63.01 Aligned_cols=67 Identities=28% Similarity=0.294 Sum_probs=58.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390 70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR 149 (209)
Q Consensus 70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 149 (209)
++..|+|++|+..|.+++...|.+. .++..+|.|++..|++++|...+.+++..+|+++..+.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP---------------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH---------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4678999999999999999988754 4789999999999999999999999999999988777666
Q ss_pred HH
Q 028390 150 SQ 151 (209)
Q Consensus 150 a~ 151 (209)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 102
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.81 E-value=4.5e-08 Score=61.48 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=62.7
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 146 (209)
...++..++|+.|+..+..++.+.|.++. ++..+|.|+..+|+|.+|+..++++++.+|+++.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE---------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch---------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45788999999999999999999888665 699999999999999999999999999999998876
Q ss_pred HHHHH
Q 028390 147 YRRSQ 151 (209)
Q Consensus 147 ~~~a~ 151 (209)
.-++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 65553
No 103
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.80 E-value=8.7e-08 Score=70.66 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=76.0
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
...+++++|.++...|++++|+..+.+++...|+. ..+++.+|.++..+|++++|+..+.+++.+.|.+......+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 46689999999999999999999999999887653 468999999999999999999999999999999998888888
Q ss_pred HHHHHHHH
Q 028390 185 ELKDKQRE 192 (209)
Q Consensus 185 ~l~~~~~~ 192 (209)
.+...+.+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 87766544
No 104
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.1e-09 Score=66.43 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=39.8
Q ss_pred CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390 1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF 42 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~ 42 (209)
.+|-+||.+.++|.|.| ||.-|-+..||||+.|.|+|+|+.+
T Consensus 65 ~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 65 AQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred hhccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 47999999999999999 9999999999999999999999876
No 105
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.77 E-value=3.6e-08 Score=81.36 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=62.8
Q ss_pred HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH---HHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA---LYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
....+++|+|.+++.+|+|++|+..|+++++++|++..+ ||++|-||..+|++++|+.++++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999999855 9999999999999999999999999973
No 106
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.7e-07 Score=72.23 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=96.4
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh---cCHHHHHHHHHHH
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---EDYSETSSLCTKV 135 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a 135 (209)
.++.+.-.|..++..|++..|...|.+|+++.|+.+. ++...|.++... ....++...+.++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------------~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------------ILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3666889999999999999999999999999887654 566777766654 3567889999999
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+..||.++.+.+.+|..++..|+|.+|...++..+.+.|.+..-...+.+.
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999999999999999999999999999999999999988776555544443
No 107
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.75 E-value=4.1e-07 Score=77.20 Aligned_cols=140 Identities=21% Similarity=0.183 Sum_probs=108.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+......|..+...++|.+|+..|.+|+.+........ .+-.+.++.|+|..|.+.|+|++|..+|++|+++-
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 44455689999999999999999999999876422111 13356789999999999999999999999999762
Q ss_pred --------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028390 140 --------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNN---RVVKLVYMELKDKQREYAKYQAEIFGT 203 (209)
Q Consensus 140 --------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~l~~~~~~~~~~~~~~~~~ 203 (209)
|.-...+...+.++..++++++|+.++.+++++. ++| +.+...++.++....++++.+. .|++
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~ 392 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-LYKK 392 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-HHHH
Confidence 3335678889999999999999999999988762 334 5666778888888888877644 6666
Q ss_pred hhhc
Q 028390 204 MLSK 207 (209)
Q Consensus 204 ~~~~ 207 (209)
.+++
T Consensus 393 ai~~ 396 (508)
T KOG1840|consen 393 AIQI 396 (508)
T ss_pred HHHH
Confidence 5543
No 108
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.75 E-value=8.7e-08 Score=76.07 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=79.0
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 144 (209)
.....+...++++.+...+..+....+.. ....+|..+|.++.+.|++++|+..+.++++.+|++..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAP-------------DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 34444555566666665555544321111 12456788888888888888888888888888888888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+...++.++...|+++++...++......|.|+..+..+..+...++...+.
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 8888888888888888888888777777787877777788777777665543
No 109
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2.2e-07 Score=82.06 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
.-.++.++..|..+...|+|++|..+|.+++...++.... .+..+|+.|+..|+++.|+..+++++
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------------~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------------PLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------------cccchhHHHHHhchHHHHHHHHHHHH
Confidence 3457789999999999999999999999999987765433 48999999999999999999999999
Q ss_pred hhCCCchHHHHHHHHHHhccC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 137 ELEPLNVKALYRRSQAHLKTS----ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
...|++...+.-+|..|...+ ..+.|...+.++++..|.|..++-.++.+.+....... -..|.+..
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s--L~~~~~A~ 440 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS--LDAYGNAL 440 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH--HHHHHHHH
Confidence 999999999999999999886 67889999999999999999999999998876544332 44454443
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=6.3e-08 Score=83.19 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=112.3
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
.+.+..|...+..++|.+|..+++.++++.|-.. ..|+++|-|.++++++..|..+|.+++.++|
T Consensus 486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQL---------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHhhcCccch---------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 3445556666778999999999999999866543 4699999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
++..+|.+++.+|..+++-.+|...+++|++.+-.+..++.+...+...++...+..+ .|.++.
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~-A~~rll 614 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK-AYHRLL 614 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999998888999999998888888776644 666553
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.72 E-value=4.9e-07 Score=81.07 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=102.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+......+...+++++|+.....++...|.... +|+.+|.++++.+++..+... .++..-
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~---------------~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS---------------ALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee---------------hHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 445567777888999999999999999999888766 578888888888887777665 666555
Q ss_pred CCch-------------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390 140 PLNV-------------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI 200 (209)
Q Consensus 140 p~~~-------------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 200 (209)
+.+. .+++.+|.||.++|++++|...|+++++++|+|+.+.+.++-..... ...+. ...
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA-~~m 171 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA-ITY 171 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH-HHH
Confidence 5544 89999999999999999999999999999999999999999888777 44433 445
Q ss_pred HHhhh
Q 028390 201 FGTML 205 (209)
Q Consensus 201 ~~~~~ 205 (209)
+++.+
T Consensus 172 ~~KAV 176 (906)
T PRK14720 172 LKKAI 176 (906)
T ss_pred HHHHH
Confidence 55544
No 112
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=8.9e-08 Score=75.73 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=98.7
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC---------C---ChHHH-------HHHHHHHHHHHhHHHHHHHhhc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS---------F---TDDEK-------HQANGLRLSCYLNNAACKLKLE 123 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~---------~---~~~~~-------~~~~~~~~~~~~~~a~~~~~~~ 123 (209)
+...+..+-..+++++|+++|..+++..+.... + .++.. -++......++.|+|.|.+--+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 334555555556666666666666655443211 0 01111 1122223458999999999999
Q ss_pred CHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 124 DYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 124 ~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+++-++..+++++..-. .-.+.||++|.+....||+.-|...|+-++.-+|++.++.+.|..+..+.......
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 99999999999997633 34789999999999999999999999999999999999999999998877666543
No 113
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=5.7e-07 Score=71.01 Aligned_cols=140 Identities=18% Similarity=0.113 Sum_probs=113.9
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------hHHHHH---------------HHHHHH
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DDEKHQ---------------ANGLRL 109 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~---------------~~~~~~ 109 (209)
+....+...|..|...|-++.|...|...+.. +.+. ..+|++ ..-..+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 34567788899999999999998888876652 1111 012211 234456
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKD 188 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~l~~ 188 (209)
..|..+|..+....+.+.|+..+.++++.+|.++.+-.-+|.+....|+|+.|+..++.+++-+|+- +++...|..++.
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999986 789999999999
Q ss_pred HHHHHHHHHHHHH
Q 028390 189 KQREYAKYQAEIF 201 (209)
Q Consensus 189 ~~~~~~~~~~~~~ 201 (209)
.+.+........-
T Consensus 261 ~lg~~~~~~~fL~ 273 (389)
T COG2956 261 QLGKPAEGLNFLR 273 (389)
T ss_pred HhCCHHHHHHHHH
Confidence 9988776655443
No 114
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.70 E-value=8.9e-07 Score=75.20 Aligned_cols=131 Identities=19% Similarity=0.163 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
...+..+.+.|..+++.|+|++|..++..|+.+....... ..+.....+.+++.++..++++++|+..+.+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3457778999999999999999999999999998762211 123356678999999999999999999999998
Q ss_pred hh-----CC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHHHHH
Q 028390 137 EL-----EP---LNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNN---RVVKLVYMELKDKQREYA 194 (209)
Q Consensus 137 ~~-----~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~l~~~~~~~~ 194 (209)
.+ .+ .-.+.+.++|.+|..+|++.+|...+++|++.. ..+ ......++....+.+.+.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 65 23 337789999999999999999999999999874 112 334444555555554444
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=4.2e-07 Score=75.11 Aligned_cols=108 Identities=18% Similarity=0.081 Sum_probs=89.4
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
.--.|..++..++..+|.+.+.+++.++|..+. +..++|..+++.|++.+|+..++..+..+|++
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPL---------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 345788889999999999999999999887643 78999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
+..|..+|.+|..+|+-.+|...+-....+...-..+...+.+
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999998888777777666666665544444443333
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=3e-06 Score=60.69 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=81.8
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
.......|..++..|++++|+..|..++...++. .+...+..++|.+++..|+|++|+..+..+ .-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~ 114 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQI-PDE 114 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCc
Confidence 4557779999999999999999999999854221 345668899999999999999999999663 334
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
+-.+.++..+|.+|...|++++|...|++++
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4456778889999999999999999999874
No 117
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.66 E-value=5e-07 Score=65.81 Aligned_cols=97 Identities=23% Similarity=0.201 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh----------cCHHHHHHHHHHHhhhCCCchHH
Q 028390 76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----------EDYSETSSLCTKVLELEPLNVKA 145 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~ 145 (209)
|+.|.+.|.......|.+.. .+++=|.+++.+ ..+++|+.-++.||.++|+...+
T Consensus 7 FE~ark~aea~y~~nP~Dad---------------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD---------------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHH---------------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 46677778777777666532 233333333333 45788999999999999999999
Q ss_pred HHHHHHHHhccCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 146 LYRRSQAHLKTSE-----------LEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 146 ~~~~a~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
++.+|.+|..++. |++|..+|++|...+|+|...++.|....
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999998874 78899999999999999999998887764
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.65 E-value=4.7e-07 Score=77.06 Aligned_cols=119 Identities=13% Similarity=0.026 Sum_probs=108.1
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.++..+..+|..++|...+......+.-+|..+. ...-.|.....+|+-++|...+..++..|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------------hHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 4567888999999999999999999998777665 4677888889999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
+.-.|..+|.++....+|++|+.+|+.|+.++|+|..+++-++.++.++++++-
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999998887753
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.61 E-value=1.4e-06 Score=76.63 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=101.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+...|..+-..|+..+|+..+..|-.+.|.+.. .|..++....++|++.+|+-+|++||+.+
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------------~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------------LWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------------HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 456888899999999999999999999999888765 58999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
|.+++..++++..|.++|+...|...|.+++.++| ..+.....+.+...++
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAH 288 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 3444444444444333
No 120
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.60 E-value=1e-06 Score=73.82 Aligned_cols=133 Identities=17% Similarity=0.002 Sum_probs=105.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
........|..+...|+++.|...+.+++...|++... ....-+....+..++...++..++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------------SLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------------hhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 45566778899999999999999999999988776531 01122333344568889999999999999
Q ss_pred CCCch--HHHHHHHHHHhccCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390 139 EPLNV--KALYRRSQAHLKTSELEKAEADIK--RALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 139 ~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~--~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 206 (209)
.|+++ ..+..+|.++++.|+|++|..+|+ .+++..|++... ..+..+...+++..+. ...|++-++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A-~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEA-AAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence 99999 888899999999999999999999 577788877664 4999999988886655 556665443
No 121
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.60 E-value=3.9e-06 Score=70.32 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
+.+.+......|...+..|+|..|.....++....|... ..+.-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~---------------~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV---------------LNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344577778899999999999999999999888654422 23556667777777777777777777
Q ss_pred hhhCCCch-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 136 LELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 136 l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
.+..|++. .+....+.++...|+++.|...+++..+..|+++.+...+..+.-..++..
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 77666664 344445777777777777777777777777777777777777666655554
No 122
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.58 E-value=2.9e-06 Score=72.85 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=91.1
Q ss_pred HHHHHHHhHHHHHcCC---HHHHHHHHHHHHHHHhhcCCC--------------C---hHHHHHH------------HHH
Q 028390 60 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSF--------------T---DDEKHQA------------NGL 107 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~---~~~A~~~y~~al~~~~~~~~~--------------~---~~~~~~~------------~~~ 107 (209)
+-.+.-+|..++..+. +..|+.+|.+|++++|+.... . ....... .+.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3345566777766544 789999999999998874211 0 1111111 111
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
...+|..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 224577888898899999999999999999999 5789999999999999999999999999999999774
No 123
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=5.4e-07 Score=71.40 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=83.1
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
...|.++++.|.+.+|...++.++...+. ...+..++.+|...++...|+..+...++..|.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence 35789999999999999999999987654 23577788888888888888888888888888888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
..+...|.++..+++.++|.+.|+.+++++|.|.++
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence 888888888888888888888888888888776544
No 124
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.57 E-value=1.2e-06 Score=72.58 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
.....+..+.+.|..++..|+|++|+..|++||.+.|++.. ...+|+|+|.||..+|++++|+.++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------------A~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------------AQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556788999999999999999999999999999887543 114699999999999999999999999
Q ss_pred HhhhC
Q 028390 135 VLELE 139 (209)
Q Consensus 135 al~~~ 139 (209)
++++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99983
No 125
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.57 E-value=2e-06 Score=77.45 Aligned_cols=109 Identities=12% Similarity=0.018 Sum_probs=90.3
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 146 (209)
|..+...|+|++|+..|.+++...|.++. ++..++..+...+++++|+..+.++...+|.+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~---------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPD---------------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 44556779999999999999999887654 56788999999999999999999999999986554
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
..++.++...++..+|+..++++++.+|++.++...+..+..+..
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445556655777777999999999999999999887777665553
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.56 E-value=1.5e-07 Score=60.95 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=66.4
Q ss_pred hcCHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390 122 LEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 122 ~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
.|+|+.|+..+++++..+|. +...++.+|.||+.+|++++|+..+++ ...+|.+......++.+.-.++++++.-+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 567788899999999999999999999 88899888998999999998888877643
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=4.6e-06 Score=63.90 Aligned_cols=136 Identities=18% Similarity=0.133 Sum_probs=93.4
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh-------------HHH------HHHHHHHHHHHhHHHHHHHhhc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEK------HQANGLRLSCYLNNAACKLKLE 123 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-------------~~~------~~~~~~~~~~~~~~a~~~~~~~ 123 (209)
.+-.|..+-..|.|++|+++|...+.-+|++..+.. +-. -+....-..+|..+|.+|+..|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 445677777889999999999988886655432210 000 0011112346777888888888
Q ss_pred CHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 124 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
+|++|.-.+++++-+.|.++-.+-++|.+++-+| +...|..+|.++++++|.+..++..+..+-..+.+..+.+.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~ 246 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAEL 246 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 8888888888888888888888888888877777 45567888888888888777777777666666655544433
No 128
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=1.3e-06 Score=71.36 Aligned_cols=99 Identities=13% Similarity=-0.036 Sum_probs=85.5
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
......|..+...|++++|+..+.+++.+.|.+.. ++..+|.++...|++++|+..+.+++...|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 34456788899999999999999999999877643 689999999999999999999999999876
Q ss_pred Cch----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390 141 LNV----KALYRRSQAHLKTSELEKAEADIKRALTIDP 174 (209)
Q Consensus 141 ~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p 174 (209)
..+ ..+..+|.++...|++++|+..|++++...|
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 432 3566899999999999999999999987766
No 129
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.55 E-value=2e-06 Score=68.48 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 57 IEACERKKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
...+..+.+.|..+... |+++.|+.+|.+|+.++..... ......++.+.|.++..+|+|++|++.|+++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45577788888888888 9999999999999999877654 2445678899999999999999999999999
Q ss_pred hhhCCC------ch-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 136 LELEPL------NV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 136 l~~~p~------~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
....-. +. ..++..+.|+...||...|...+++....+|.-
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 865321 23 346778899999999999999999999999853
No 130
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8e-07 Score=74.65 Aligned_cols=124 Identities=18% Similarity=0.112 Sum_probs=111.1
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+..|+.-|.-++--|.+.+|..+|.+|..+++.-++ +|...|..+.-.++-++|+..|.+|-++
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---------------aWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---------------AWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---------------HHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 3556788888888899999999999999999766444 7999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
-|......+.+|.=|..++.+..|..+|..|+.+.|.+|-+...+.-+.-..+.+.+..
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHH
Confidence 99999999999999999999999999999999999999999999988877666665543
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=5.9e-06 Score=65.39 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
....+|.-+-+.+..+..+.+.+.|+..+.+|++.+|+... +-.-+|.++...|+|+.|++.+..
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---------------Asi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---------------ASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---------------hhhhhhHHHHhccchHHHHHHHHH
Confidence 34677888899999999999999999999999998887665 467889999999999999999999
Q ss_pred HhhhCCCc-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 135 VLELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 135 al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+++.||.. +.+.-.+..||.++|+.++....+.++.+..++.. +...+..+...++
T Consensus 240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~ 296 (389)
T COG2956 240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQE 296 (389)
T ss_pred HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhh
Confidence 99999998 66788899999999999999999999999887643 3344444444443
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4e-06 Score=65.78 Aligned_cols=116 Identities=18% Similarity=0.094 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028390 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT 156 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 156 (209)
+.-+...+.-+...|.+.. -|..+|.+|+.+|++..|...|.+++++.|+|+..+..+|.+++.+
T Consensus 139 ~~l~a~Le~~L~~nP~d~e---------------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~ 203 (287)
T COG4235 139 EALIARLETHLQQNPGDAE---------------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ 203 (287)
T ss_pred HHHHHHHHHHHHhCCCCch---------------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 4444455555555555544 4899999999999999999999999999999999999999998887
Q ss_pred C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028390 157 S---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208 (209)
Q Consensus 157 ~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (209)
. ...++...|++++.++|+|..+...|........++.+. -..+..|+..+
T Consensus 204 a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A-~~~Wq~lL~~l 257 (287)
T COG4235 204 AGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA-AAAWQMLLDLL 257 (287)
T ss_pred cCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH-HHHHHHHHhcC
Confidence 7 466899999999999999999999999998888777755 33555665543
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=5.1e-06 Score=63.67 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=59.3
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc---CHHHHHHHHHHHhhhCCC
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVLELEPL 141 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~ 141 (209)
+.++.|+..|+|.+|..+|.+.+-..|..+. .+..+|.+++-+| +++.|.++|.++++++|.
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l---------------~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPL---------------YFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 3456667778888888888887776655443 5677787777665 567788888888888888
Q ss_pred chHHHHHHHHHHhccCCHHHH
Q 028390 142 NVKALYRRSQAHLKTSELEKA 162 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A 162 (209)
+..+++.+..|-..+-+..++
T Consensus 224 ~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 224 NLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred hHHHHHHHHHHHHHHHHHhHH
Confidence 888888777766655544444
No 134
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.53 E-value=6.9e-06 Score=68.58 Aligned_cols=125 Identities=15% Similarity=0.168 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
+.+.+......|...+..|+|+.|.+...++-.. .+.+ ...+...+......|+++.|..++.++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p-----------~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQP-----------VVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccch-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4556777788999999999999999666654442 2111 112344455557888899999999888
Q ss_pred hhhCCCch-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 136 LELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 136 l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
.+.+|++. ......+..+...|+++.|...+++..+.+|+++.+...+..++-+.++...
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 88888874 3444558888888999999999998888899888888888887766655544
No 135
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.52 E-value=1.2e-05 Score=57.47 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=91.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-------FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 132 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 132 (209)
...+...|......++...++..+.+++.+...+.- ........+......+...++..+...|+++.|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 445556788888889999999999999998754321 1124557788889999999999999999999999999
Q ss_pred HHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 133 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 133 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.+++..+|.+..++..+-.+|...|+...|+..|.++..
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 136
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=6e-06 Score=61.31 Aligned_cols=94 Identities=22% Similarity=0.241 Sum_probs=79.7
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNV-----KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+-.-|.-++..|+|++|.+.|..||.++|..+ -.|.++|.|+.+++.++.|+.++.++++++|.+..+....+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 45567788999999999999999999999863 4688999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 028390 187 KDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~ 206 (209)
++.+.++... -..|++...
T Consensus 178 yek~ek~eea-leDyKki~E 196 (271)
T KOG4234|consen 178 YEKMEKYEEA-LEDYKKILE 196 (271)
T ss_pred HHhhhhHHHH-HHHHHHHHH
Confidence 8888776654 335665543
No 137
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=9.5e-07 Score=74.32 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=82.3
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
.++..+|..|...|+|++|+..|+.||..+|++...|.++|-.+....+..+|+..|.+|++|.|.-.-++..+....-.
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN 510 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred HHHHHHHHH
Q 028390 190 QREYAKYQA 198 (209)
Q Consensus 190 ~~~~~~~~~ 198 (209)
++.+++.-+
T Consensus 511 lG~ykEA~~ 519 (579)
T KOG1125|consen 511 LGAYKEAVK 519 (579)
T ss_pred hhhHHHHHH
Confidence 777776544
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=1.7e-06 Score=71.53 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=56.9
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 146 (209)
+..++..++-.+|+...++++...|.+ ..++...|..++..++++.|+..+.++..+.|+....|
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W 271 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW 271 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH
Confidence 444444555556666666666544332 23455666666667777777777777777777777777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
+.+|.+|..+|+++.|+..++.+....
T Consensus 272 ~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 272 YQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 777777777777777776666554443
No 139
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.44 E-value=4.1e-05 Score=58.00 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=92.6
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-----------CHHHHH
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-----------DYSETS 129 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~ 129 (209)
......|..+++.|+|..|+..|...+...|..+. ...+++.+|.+++.+. ...+|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------------hhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 45678899999999999999999999999998775 3457788888876653 345899
Q ss_pred HHHHHHhhhCCCchHH-----------------HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 130 SLCTKVLELEPLNVKA-----------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 130 ~~~~~al~~~p~~~~~-----------------~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
..++..++.-|++..+ -+..|.-|.+.|.+..|+.-++.+++-.|+.+.....+..+.+.-.+
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 9999999999987322 24468999999999999999999999999987776666665544433
Q ss_pred H
Q 028390 193 Y 193 (209)
Q Consensus 193 ~ 193 (209)
.
T Consensus 191 l 191 (203)
T PF13525_consen 191 L 191 (203)
T ss_dssp T
T ss_pred h
Confidence 3
No 140
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=7.4e-07 Score=73.44 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=105.1
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhh-----------------cCCCC-----hHHHHHHHHHHHHHHhHHHHHHH
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF-----------------HHSFT-----DDEKHQANGLRLSCYLNNAACKL 120 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~-----------------~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~ 120 (209)
-...+..+++.|++..|++.+.-.-..+.. ..++. .+..-..+.....+..|.|.+.+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 346777888999999998876422211111 11111 12223345666778889999999
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
..|++++|...|.+++..+.....++|++|..+..+|+.++|+.+|-+...+--++.+++..++.+++.++...+.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 9999999999999999999999999999999999999999999999998888788999999999999988776554
No 141
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=4.8e-06 Score=68.06 Aligned_cols=141 Identities=12% Similarity=-0.014 Sum_probs=106.1
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-------------C--hHHHHH-------HHHHHHHHHhHHHHHHH
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------T--DDEKHQ-------ANGLRLSCYLNNAACKL 120 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-------------~--~~~~~~-------~~~~~~~~~~~~a~~~~ 120 (209)
..-.|..++..|+++.|+..+.+++...|.+... . ...... ..+....++..+|.++.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 4457889999999999999999999987765411 0 000000 11122345568889999
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHHHH
Q 028390 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV----KLVYMELKDKQREYAKY 196 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~----~~~l~~l~~~~~~~~~~ 196 (209)
.+|++++|+..+.++++++|++..++..+|.+++..|++++|+..+.+++...|.++.. ...+..+.....+..+.
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998754332 33567776666666555
Q ss_pred HHHHHHhh
Q 028390 197 QAEIFGTM 204 (209)
Q Consensus 197 ~~~~~~~~ 204 (209)
. ..|.+.
T Consensus 206 ~-~~~~~~ 212 (355)
T cd05804 206 L-AIYDTH 212 (355)
T ss_pred H-HHHHHH
Confidence 3 344443
No 142
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.41 E-value=4.5e-06 Score=72.48 Aligned_cols=122 Identities=19% Similarity=0.103 Sum_probs=106.6
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
-..+.-.|..+...+..++|..+..+|-.+++. .+..|+.+|.++...|++++|.+.|..++.++
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---------------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPL---------------SASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---------------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 334556677777778888888888888776544 45689999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEA--DIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
|+++.....+|.++...|+-.-|.. .+..+++++|.|.+++..+..+-+...+..+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 9999999999999999999888888 99999999999999999999999888877643
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.41 E-value=6e-06 Score=64.94 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=74.3
Q ss_pred HHHhHHHHHH-HhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 028390 110 SCYLNNAACK-LKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLV 182 (209)
Q Consensus 110 ~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~ 182 (209)
...+..|..+ +..|+|++|+..|...+...|++ +.++|.+|.+|+..|++++|+..|++++...|++ ++++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4456666665 56799999999999999999988 5899999999999999999999999999998886 556656
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028390 183 YMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 183 l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
+..+...+++..+. +..|.+.
T Consensus 223 lg~~~~~~g~~~~A-~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKA-KAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHH-HHHHHHH
Confidence 66666655544433 3344443
No 144
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=1.2e-06 Score=73.22 Aligned_cols=123 Identities=20% Similarity=0.095 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh---cCHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---EDYSETSSL 131 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~ 131 (209)
+....++.++.+|+..+..+.+..|+..|.+++...+.. +.+|.|++.++++. |+--.|+.+
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~AlrD 433 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALRD 433 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHHh
Confidence 456778899999999999999999999999999986653 45799999999875 567789999
Q ss_pred HHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
|..+++++|...+++|+++.++..++.+.+|+.+...+....|.+........-+.+.++.
T Consensus 434 ch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a 494 (758)
T KOG1310|consen 434 CHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA 494 (758)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence 9999999999999999999999999999999999988888889776655555544444443
No 145
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.40 E-value=9.5e-07 Score=49.82 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666655543
No 146
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.39 E-value=1e-05 Score=54.93 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=82.0
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-----
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL----- 138 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----- 138 (209)
...|...+..|.|.+|...|.+|+.+..+-|. ++.-+....-+-++..++..+..+|+|++++...+++|..
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence 45677888999999999999999998655443 4444455555667889999999999999999999999843
Q ss_pred --CC----CchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 139 --EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 139 --~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+. .|+.+.+++|.++..+|..++|+..|+.+-++
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 35788899999999999999999999988654
No 147
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.38 E-value=6.2e-07 Score=47.51 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 148
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.37 E-value=1e-06 Score=70.32 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=71.9
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
.-..|.-|+++|.|++||..|.+++..+|.|+-.+.++|.+|.++..|..|..++..|+.|+.....+.......+..+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999998766655555555555555
Q ss_pred HHHH
Q 028390 192 EYAK 195 (209)
Q Consensus 192 ~~~~ 195 (209)
...+
T Consensus 180 ~~~E 183 (536)
T KOG4648|consen 180 NNME 183 (536)
T ss_pred hHHH
Confidence 4443
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=1.5e-05 Score=55.03 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=69.6
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYM 184 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~ 184 (209)
+.+++|.++-.+|+.++|+..|.+++...... ..+++.+|.++..+|++++|+..+++++.-.|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 57899999999999999999999999976444 678999999999999999999999999998888 666665555
Q ss_pred HHHHHHHHHH
Q 028390 185 ELKDKQREYA 194 (209)
Q Consensus 185 ~l~~~~~~~~ 194 (209)
.+.......+
T Consensus 83 l~L~~~gr~~ 92 (120)
T PF12688_consen 83 LALYNLGRPK 92 (120)
T ss_pred HHHHHCCCHH
Confidence 5544443333
No 150
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.33 E-value=6.3e-07 Score=47.54 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHHhhhCCCchHHHHHHHHHHhccCCHHHHH
Q 028390 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAE 163 (209)
Q Consensus 132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~ 163 (209)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999986
No 151
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.32 E-value=1.2e-05 Score=67.20 Aligned_cols=126 Identities=12% Similarity=0.024 Sum_probs=99.0
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
........|..+...|+.+.|.....+++.. +.++. +....+. ...+++++++..++..++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------------l~~l~~~--l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------------LVLLIPR--LKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------------HHHHHhh--ccCCChHHHHHHHHHHHhh
Confidence 3445567788999999999999999999883 22221 1222222 2459999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
.|+++..++.+|.++...++|++|..+|+++++..|++... ..+..+.+...+..+. ...|++-
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~~~A-~~~~~~~ 387 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKPEEA-AAMRRDG 387 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999987653 4688888888776655 4455543
No 152
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.31 E-value=0.00019 Score=55.35 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=100.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+.+.|...++.|+|.+|+..|.......|..+- ...+...++.++++.++|++|+...++-+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 667889999999999999999999998876555433 24577889999999999999999999999999
Q ss_pred CCch---HHHHHHHHHHhccCC--------HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHH
Q 028390 140 PLNV---KALYRRSQAHLKTSE--------LEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 140 p~~~---~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~~~~~~~ 196 (209)
|.++ -++|-+|.+++..=+ ...|...|+..+...|++ +++...+..+..++...+-.
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~ 172 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA 172 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 8874 468888888766543 446889999999999987 56666677776666555443
No 153
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.31 E-value=1.3e-06 Score=46.20 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
.+|+++|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 479999999999999999999999999999974
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.31 E-value=1.3e-05 Score=63.85 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=77.7
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-cCHHHHHHHHHHHhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE 137 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~ 137 (209)
.+..+.+ +-..++..++.+|+..|.+|+.++.....+ ...+.++.++|.+|... |+++.|++.|.+|++
T Consensus 74 Aa~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 74 AAKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444 444445568888888888888887665553 44567899999999998 999999999999998
Q ss_pred hCC--Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 138 LEP--LN----VKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 138 ~~p--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
+-. +. ...+...|.++..+|+|++|+..|+++....
T Consensus 144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 621 11 4567889999999999999999999998753
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.28 E-value=2.2e-06 Score=45.21 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
++++.+|.++..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777777664
No 156
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.27 E-value=1.2e-05 Score=69.00 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=76.7
Q ss_pred HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
...++++.+|+.|...|++++|+.+++++|...|..++.|+.+|.++-+.|++.+|...++.|..+|+.|--+......-
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999999999999886666655544
Q ss_pred HHHHHHHHHH
Q 028390 187 KDKQREYAKY 196 (209)
Q Consensus 187 ~~~~~~~~~~ 196 (209)
.=+....++.
T Consensus 272 ~LRa~~~e~A 281 (517)
T PF12569_consen 272 LLRAGRIEEA 281 (517)
T ss_pred HHHCCCHHHH
Confidence 4333443333
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.8e-05 Score=63.63 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=106.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------hHHHHHHHHH------HHHHHhHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DDEKHQANGL------RLSCYLNNAACKL 120 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~~a~~~~ 120 (209)
.+.+-+.|..++..|++.+|+..|.++..++|..-..- .+.......+ ...-|+--+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 55677899999999999999999999988766532110 0111111112 2223555566777
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
..++|..|+.+..++|+.+|.+..++..+|.++..+++.+.|+-.|+.|+.+.|.+-.....|-.++=..+..++
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 889999999999999999999999999999999999999999999999999999988888877777655555444
No 158
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=3e-05 Score=64.23 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=94.8
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 152 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 152 (209)
.+.++.|+..+.+.....|. +..-++.+++..++-.+|++.+.+++...|.+...+...|..
T Consensus 182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46788888888887665332 356688999999999999999999999999999999999999
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 153 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 153 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+...++++.|+...+++..+.|++...+..|+.++-.+++++++
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999888765
No 159
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.25 E-value=2.9e-06 Score=47.82 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=39.5
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 152 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 152 (209)
++..+|.+|..+|++++|+..++++++.+|+++.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 688999999999999999999999999999999999998853
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=2.6e-05 Score=70.37 Aligned_cols=112 Identities=10% Similarity=0.023 Sum_probs=92.0
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh--
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-- 138 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 138 (209)
.+++..|.+|-+.|++++|...|.+++++.|.++. +.+|+|..|... ++++|++++.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~---------------aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE---------------IVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH---------------HHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999876554 678888887777 888888877777633
Q ss_pred ------------------CCCchHHHHH--------HH------------HHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390 139 ------------------EPLNVKALYR--------RS------------QAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 139 ------------------~p~~~~~~~~--------~a------------~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
+|++.+.++. ++ .+|...++|++++..++.+++.+|.|.-+.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 4555444222 23 788999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028390 181 LVYMELKD 188 (209)
Q Consensus 181 ~~l~~l~~ 188 (209)
..+..++.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 99999887
No 161
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.21 E-value=3e-05 Score=66.65 Aligned_cols=129 Identities=18% Similarity=0.117 Sum_probs=94.7
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---------hHHHHHHHHHHH---------HHHhHHHHHHHhhcC
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQANGLRL---------SCYLNNAACKLKLED 124 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~~~~~~---------~~~~~~a~~~~~~~~ 124 (209)
+...+...+..|+...|......|++..|.....+ .++.+..+.+.. .+|+..+.....+++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 44455556666777777777777766655532211 222333333333 256677777778888
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
.++|+..|+++++.-|+..+.|+.+|+++..+++.+.|...|...++..|.....+-.++++.+...
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998888888887764
No 162
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.20 E-value=1.3e-05 Score=46.79 Aligned_cols=49 Identities=31% Similarity=0.401 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+.+|.+|.+++++|+|++|..+.+.+++++|+|..+......+.+++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999888888776654
No 163
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.5e-05 Score=64.84 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=86.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+.+.+.++.+.++|..|+...+++|.+.|.. ..+++.+|.++..+++|+.|+.++.++++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------------VKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 4457888999999999999999999999987664 4589999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHH-HHHHHHHHhcCC
Q 028390 140 PLNVKALYRRSQAHLKTSELEKA-EADIKRALTIDP 174 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~l~p 174 (209)
|.|-.+...+..|..+..++... ...|.+.+..-+
T Consensus 322 P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 322 PSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99988888888888888776654 667777776543
No 164
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=2.3e-05 Score=67.87 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=78.3
Q ss_pred HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
..+.+....|......++|+++..+++..++++|-....||++|-|..++++++.|..+|.+++.++|++.++++.++..
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 33444444555556679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028390 187 KDKQREYAKY 196 (209)
Q Consensus 187 ~~~~~~~~~~ 196 (209)
+-++++..+.
T Consensus 563 yi~~~~k~ra 572 (777)
T KOG1128|consen 563 YIRLKKKKRA 572 (777)
T ss_pred HHHHhhhHHH
Confidence 8887776543
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.18 E-value=4.5e-05 Score=63.51 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh---------cCHHHHHHHHHHHhhhCCCchHHH
Q 028390 76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---------EDYSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~ 146 (209)
...|+..|.+|+...+-+|.+ +.+|..+|.|++.. ..-.+|.....++++++|.++.++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~ 341 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLK------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKIL 341 (458)
T ss_pred HHHHHHHHHHHhhcccCCccc------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 356777788888333333332 56788888888765 234577888889999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
..+|.++...++++.|...|++|+.++|+.+.+......+.-.-
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN 385 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999988888777754433
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=98.18 E-value=1.5e-05 Score=57.60 Aligned_cols=89 Identities=12% Similarity=-0.043 Sum_probs=79.7
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
.....+..|--++..|++++|...+..+...+|.+++.++.+|.|+..+++|+.|+..|-.+..++++|+...-....|.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 34456778888889999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHH
Q 028390 188 DKQREYAKY 196 (209)
Q Consensus 188 ~~~~~~~~~ 196 (209)
-.+++....
T Consensus 116 l~l~~~~~A 124 (165)
T PRK15331 116 LLMRKAAKA 124 (165)
T ss_pred HHhCCHHHH
Confidence 777766554
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.17 E-value=2.5e-05 Score=62.40 Aligned_cols=110 Identities=19% Similarity=0.128 Sum_probs=69.4
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHH--HHHhhc--CHHHHHHHHHHHhhhCCCc
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA--CKLKLE--DYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~--~~~~A~~~~~~al~~~p~~ 142 (209)
-..+.+.++++.|.+.+..+-++..+ .+..+++. +.+..| .+.+|...|++..+..+.+
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t 200 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST 200 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence 34556677777777777665443211 12333333 333344 5788888888877776777
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
+..+..+|.|+..+|+|++|...+..++..+|.+++....+.-+...+.+.
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888888888888888888887777776665555444
No 168
>PRK10941 hypothetical protein; Provisional
Probab=98.15 E-value=4.3e-05 Score=60.18 Aligned_cols=82 Identities=9% Similarity=0.073 Sum_probs=73.7
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
........|+=.+|...++++.|+...+.++.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+......
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 45566789999999999999999999999999999999989999999999999999999999999999999887665444
Q ss_pred HH
Q 028390 186 LK 187 (209)
Q Consensus 186 l~ 187 (209)
+.
T Consensus 258 l~ 259 (269)
T PRK10941 258 IH 259 (269)
T ss_pred HH
Confidence 43
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=2.1e-05 Score=61.25 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH---HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK---ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
..++..|.-.+..|+|++|+..++.++...|.... +.+.+|.+++++++++.|+..+++.++++|+++.+..
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34778899999999999999999999999998854 4599999999999999999999999999999865543
No 170
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.13 E-value=1.4e-05 Score=69.74 Aligned_cols=128 Identities=27% Similarity=0.375 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh--hcCHHHHH
Q 028390 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LEDYSETS 129 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~ 129 (209)
........+...+++|+..+.++++..|...|..++.+.|.+... .+..+.+.+.|++. +++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhc
Confidence 455667778889999999999999999999999999999865432 35578899999886 57999999
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
..|+-++...|...++++.++.+|..++.++-|++++.-....+|.+.++...+.+++..+
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888899999988877666666554
No 171
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.13 E-value=5.4e-05 Score=62.03 Aligned_cols=114 Identities=11% Similarity=0.134 Sum_probs=93.6
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
++...-...|..+|+++.|.-|...|..|+++........ ....+++......+-..+..||+++++.+.|+....+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 3455556788899999999999999999999987632211 1223455556666778999999999999999999999
Q ss_pred HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.|.++|.+.-.+++.|.|+..+.+|.+|-..+--+.-
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887766543
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.10 E-value=6.4e-05 Score=64.74 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=102.1
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+...++...-.+..++|+.....||+.+|+.+ .+|..+|+++-++++.+.|...|...+..+|+.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~---------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFH---------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH---------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 34444445556788889888898988877644 579999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
+..|..++..-.+.|+.-.|...+.++.-.+|.|...+-..-++.-+..-..+.+
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999988887777766665554443
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.09 E-value=1.7e-05 Score=63.29 Aligned_cols=92 Identities=25% Similarity=0.279 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHh
Q 028390 75 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHL 154 (209)
Q Consensus 75 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 154 (209)
.+.+|...|.+....++.. ..+++.+|.|++.+|+|++|...+..++..+|.++.++.+++.+..
T Consensus 182 ~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp CCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6899999999865543322 3568999999999999999999999999999999999999999999
Q ss_pred ccCCH-HHHHHHHHHHHhcCCCCHHHHH
Q 028390 155 KTSEL-EKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 155 ~~~~~-~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
.+|+. +.+.+++.+....+|+++-+..
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99998 6677888888888999876543
No 174
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.07 E-value=1e-05 Score=42.59 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
.++..+|.+++.+|+|++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999975
No 175
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.07 E-value=2.9e-05 Score=69.37 Aligned_cols=136 Identities=11% Similarity=0.090 Sum_probs=104.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---------hHHHHHH------------HHHHHHHHhHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQA------------NGLRLSCYLNNAAC 118 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~a~~ 118 (209)
+..+--.|..|...-+...|...|.+|.++++++.... ..+++.. .......|..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 44455667777666677888899999988877653321 1112111 11222346669999
Q ss_pred HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
|.+-+++.+|+..++.+++.+|.+...|..+|.+|-..|.+..|++.|.+|..++|.+.-+..-.+.+.....++++
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777766666666665554
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=98.06 E-value=2.8e-05 Score=64.68 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHh
Q 028390 75 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHL 154 (209)
Q Consensus 75 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 154 (209)
+-.+|...-.+|+++++.++ .++..+|.+....++++.|+..+++++.++|+...+++..|.+..
T Consensus 319 ~~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 45567777777787766654 478899999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCC
Q 028390 155 KTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 155 ~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
..|+.++|...++++++++|.-
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchh
Confidence 9999999999999999999975
No 177
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.06 E-value=3.6e-05 Score=54.33 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=63.9
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
..+++.|.-.+..|+|.+|++.++.+...-|.. ..+-+.+|-+|+..++++.|+..+++-++++|.++.+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 357889999999999999999999999887654 78899999999999999999999999999999986543
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=1.1e-05 Score=65.89 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
++...-.++-+.|+.+|-.|+|+.|+..-..-+.+...-.+ ....-.++.|+|.||..+|+|+.|+++|.+
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 44555566778889999999999999998888877654322 122345899999999999999999999988
Q ss_pred Hhhh----CCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 135 VLEL----EPLN--VKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 135 al~~----~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
.+.+ .... ...-|.+|.+|.-+.++++|+.+..+-+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6643 4433 4567999999999999999999998866553
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.98 E-value=0.00012 Score=62.82 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
+|.-+|.++...++|++|+..|..|+.++|+|...+..++....++++++.....-.+.+++.|.+
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 455555555555555555555555555555555555555555555555555544444445555444
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.97 E-value=0.00042 Score=51.16 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=87.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
.......|+.+...|++.+|..+|.+++.-.-.+. ..+...++...+..+++..|...++.+.+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 44566789999999999999999999986321111 3468999999999999999999999999998
Q ss_pred CCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 140 PLN--VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 140 p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
|.. ++.....|.+|..+|.+.+|...|+.++.-.|+-
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 864 7788999999999999999999999999998863
No 181
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.93 E-value=1.8e-05 Score=41.70 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
++|+.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667777777777777777777777777664
No 182
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00033 Score=56.56 Aligned_cols=125 Identities=16% Similarity=0.083 Sum_probs=88.9
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC----------------------------------------hHHH--
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT----------------------------------------DDEK-- 101 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~----------------------------------------~~~~-- 101 (209)
...|-.+|..|+|++|+..|.-+......+...+ .+++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 4578899999999999999988776322211111 0111
Q ss_pred HH----HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390 102 HQ----ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 102 ~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
-. +++.. .-...+|.++...-.|.+||..|.+++.-+|........+|.||+++.-++-+...++-.+...|+++
T Consensus 141 ~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 141 LTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 00 11111 11345666666677788999999999988898888888899999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 028390 178 VVKLVYMELKDK 189 (209)
Q Consensus 178 ~~~~~l~~l~~~ 189 (209)
-+.+...-..-+
T Consensus 220 iA~NLkacn~fR 231 (557)
T KOG3785|consen 220 IAKNLKACNLFR 231 (557)
T ss_pred HHHHHHHHHHhh
Confidence 777765544433
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=0.00023 Score=55.41 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=74.0
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYME 185 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~ 185 (209)
.++-|.-+++.|+|..|...|..-++.-|++ +.++|.+|.+++.+|++++|...|..+.+-.|.++ ++.--+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6888899999999999999999999998876 78999999999999999999999999999988774 55555666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028390 186 LKDKQREYAKYQAEIFGT 203 (209)
Q Consensus 186 l~~~~~~~~~~~~~~~~~ 203 (209)
+..++++..+. +.++..
T Consensus 224 ~~~~l~~~d~A-~atl~q 240 (262)
T COG1729 224 SLGRLGNTDEA-CATLQQ 240 (262)
T ss_pred HHHHhcCHHHH-HHHHHH
Confidence 65555554433 334443
No 184
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=7.2e-05 Score=60.25 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=80.9
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 146 (209)
=..+..+++|..|+...+-.+....... .++-..+|.|++.+|+|++|+..|..+.+-+..+.+.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE--------------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~ 94 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE--------------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG 94 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc
Confidence 3456778999999998877664322211 23456678999999999999999999999888889999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
.++|-|++.+|.|.+|.....++ |.++-..+.+-.+.-++
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence 99999999999999998766554 55665555555554433
No 185
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=97.92 E-value=2e-05 Score=52.02 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=36.5
Q ss_pred CCCCCccEEEEEeCccc-ccccCC-cCCCCCCceEEEEEEEc
Q 028390 1 MTMKKEEQATVTISAEY-LCSHEV-SELVSADSVLHYEVTLI 40 (209)
Q Consensus 1 ~~m~~ge~~~~~~~~~~-~~~~~~-~~~ip~~~~l~~~~~l~ 40 (209)
..|++||..+|.+.+++ ||..+. ...||+++++.|+|+|+
T Consensus 53 ~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 53 IGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred ccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence 36999999999999999 999986 66799999999999985
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00031 Score=54.52 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=94.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC------------CChHH------------HHHHH--HHHHHHHh
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS------------FTDDE------------KHQAN--GLRLSCYL 113 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~------------~~~~~------------~~~~~--~~~~~~~~ 113 (209)
-.......+.+...|+|.-.+..|.+.+...|.... +.+.+ ...++ +-...+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 344555666777777777777777777776533211 00000 01111 12345678
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHH
Q 028390 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKD 188 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~ 188 (209)
|.+.+|.-.++|..|...+++++..||.++.+..++|.|+..+|+..+|++.++.+....|.. ..+...+..+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999974 444445555544
No 187
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.86 E-value=6.8e-05 Score=52.03 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=58.8
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
+-..|.....-|+.+.|++.+.+++.+.|.++.+|.+++.++.-.|+.++|+.++++++++..+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 34556677788999999999999999999999999999999999999999999999999996543
No 188
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5e-05 Score=57.88 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=70.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
..-|.+++.-+.|..|+..|.++|.++|..+..|-+++.|+.++++|+.+..+.+++++++|+.......+....-..+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 44567788889999999999999999999999999999999999999999999999999999987777766665544444
Q ss_pred HH
Q 028390 193 YA 194 (209)
Q Consensus 193 ~~ 194 (209)
+.
T Consensus 94 ~~ 95 (284)
T KOG4642|consen 94 YD 95 (284)
T ss_pred cc
Confidence 43
No 189
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00036 Score=57.27 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=55.0
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.++-.|..+|..++|..|+.+-.++|+..+... .++.-.|...+.+|+.++|+-.+..|+.+-|.
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~---------------~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH---------------EALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc---------------hHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 344555556666666666666666666544432 23444444455555555555555555555554
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
....|-.+-.+|...|.+.+|...-+.++..-|.+......+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 444444444455555555544444444444444444444433
No 190
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0072 Score=46.27 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=82.4
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh-------------HH-------------------HHHHHHHHHHHHh
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DE-------------------KHQANGLRLSCYL 113 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-------------~~-------------------~~~~~~~~~~~~~ 113 (209)
.+..+|++++..+|+....++|+++.+.+.|+. .+ .++.......++.
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 444567788999999999999999988776651 00 0112333344566
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCCCc------hH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390 114 NNAACKLKLEDYSETSSLCTKVLELEPLN------VK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
..|..--.+++|.+|+..|+.+....-+| .+ -++.-|.|+....|.-.+...+++..+++|.-.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 66777778899999999999988665443 23 356678999999999999999999999999743
No 191
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.76 E-value=0.00012 Score=65.72 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=94.4
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+...|..+...+++..|+..|+.|++..|.+.. +|..+|.+|...|.|..|++.++++..++|
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n---------------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN---------------LWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHH---------------HHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 33455888889999999999999999999887654 799999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390 141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 185 (209)
.+.-+.|..|.....+|++.+|+..+..++.....-..+...+..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999888765443333333333
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.73 E-value=0.00016 Score=54.64 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=69.6
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
+.++.+++.+|..|-.+|-+.-|.-+++.++.+.|+-+.++..+|.-+..-|+|+.|...|..+++++|.+.-+.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999999875443
No 193
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.70 E-value=6.8e-05 Score=39.38 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
.+|..+|.+|..+|++++|+..+.++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 368999999999999999999999999999954
No 194
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.67 E-value=0.00062 Score=58.10 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=83.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
.-....|..+...|+.++|+..|++++... ..+.++...++..++.|++.+.+|++|..++.+..+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 336678899999999999999999998532 22446677889999999999999999999999998854
Q ss_pred CchHH--HHHHHHHHhccCCH-------HHHHHHHHHHHhcCC
Q 028390 141 LNVKA--LYRRSQAHLKTSEL-------EKAEADIKRALTIDP 174 (209)
Q Consensus 141 ~~~~~--~~~~a~~~~~~~~~-------~~A~~~~~~a~~l~p 174 (209)
.+.++ .|-.|.|+..+++. ++|...+.++..+-.
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 34454 45578999999999 889999988877643
No 195
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.66 E-value=0.0055 Score=46.79 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=74.4
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHH-------HHHHhhh
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL-------CTKVLEL 138 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~~ 138 (209)
.+..+-....+++|+..|.-|+-...-.... ....+.++..+|++|..+++-+..... |.+++..
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3335556678999999999998764432211 134677899999999999995554444 4444443
Q ss_pred CC------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 139 EP------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 139 ~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
.. +....+|.+|....++|++++|..+|.+++..-..+
T Consensus 155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 32 225788999999999999999999999999764433
No 196
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.63 E-value=0.00042 Score=56.05 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=98.1
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC--
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-- 141 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-- 141 (209)
...|+.+...+.|+++++.|..|+++.....+. -+...++..+|..+..++++++|+-+..+|.++-..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 348888889999999999999999987654432 233567899999999999999999998888866321
Q ss_pred --c------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028390 142 --N------VKALYRRSQAHLKTSELEKAEADIKRALTID--PNN----RVVKLVYMELKDKQREYAKYQAEIFGTMLSK 207 (209)
Q Consensus 142 --~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~--p~~----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 207 (209)
+ .-++|.++.++..+|..-+|.++.+++.++. ..| .-....+..|++...+.+.. -..|...+++
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a-f~rYe~Am~~ 275 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA-FRRYEQAMGT 275 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH-HHHHHHHHHH
Confidence 1 3467889999999999999999999998763 333 33344556666655554443 2345544444
Q ss_pred C
Q 028390 208 M 208 (209)
Q Consensus 208 ~ 208 (209)
|
T Consensus 276 m 276 (518)
T KOG1941|consen 276 M 276 (518)
T ss_pred H
Confidence 4
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.63 E-value=0.00076 Score=55.52 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=83.0
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC-
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP- 140 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p- 140 (209)
++-+.|+.+.-.|+++.|+++|..++.+.-.-.. ....+...+.+|..|..+.++++||.+..+-+.+-.
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999887654332 133456788999999999999999999988765532
Q ss_pred -----CchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 141 -----LNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 141 -----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
.-..+++.+|.+|..+|..++|+.+.+..+++
T Consensus 308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23678999999999999999999998888765
No 198
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.61 E-value=0.00011 Score=38.18 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
+++++|.++..+|++++|...|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777766653
No 199
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.56 E-value=0.00064 Score=58.16 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 152 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 152 (209)
.|....|+.+...|+...|..... -..++|.+.++-+-.-.|-..+..++.+...-+-.++.+|.+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v--------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~ 685 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDV--------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNA 685 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcc--------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchh
Confidence 577888999999998877765544 378999999999999999999999999997778889999999
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 153 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 153 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
+..+.+.+.|++.|+.|++++|+++.+.+.|..+.
T Consensus 686 ~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 686 YLALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999999999999999988877664
No 200
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.55 E-value=0.0052 Score=50.18 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
..+...+......|...+..|+|..|.....++-+.-+. -...|.--+...-.+|+++.|=.++.
T Consensus 78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---------------p~l~~l~aA~AA~qrgd~~~an~yL~ 142 (400)
T COG3071 78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---------------PVLAYLLAAEAAQQRGDEDRANRYLA 142 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---------------hHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 356677888888999999999999999998886553221 13456666777778888888888888
Q ss_pred HHhhh-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390 134 KVLEL-EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 134 ~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~ 195 (209)
++-+. +.+...+...++..+...|+++.|......+++..|.++.+.+...+++-+++....
T Consensus 143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 88888 334466778888888888888888888888888888888888888887777665543
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.49 E-value=0.0011 Score=51.37 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=64.7
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
+..+++-|...+..|+|++|++.++.+....|.. .++.+.++.++++.++++.|+..+++-+.+.|.++.+-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 4468899999999999999999999999887654 78999999999999999999999999999999886553
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.47 E-value=7.9e-05 Score=39.38 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028390 82 KYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 129 (209)
Q Consensus 82 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 129 (209)
.|++||++.|+++. +|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~---------------a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAE---------------AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHH---------------HHHHHHHHHHHCcCHHhhc
Confidence 37899999887654 8999999999999999986
No 203
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.46 E-value=0.0041 Score=53.65 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=85.3
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+.-.+..+...|++++|+++.++||...|+. +.+|...|.++-..|++.+|....+.+-.+|+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---------------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---------------VELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 34556778888999999999999999986664 458999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
+.-.....+..+.+.|+.++|...+..-..-+
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 98888889999999999999998887665443
No 204
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0035 Score=53.68 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=73.7
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC----
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE---- 139 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 139 (209)
++.+.++|+.+..++|+..++ .+. ..+. .+..-.|++.+++|+|++|+..|+..+..+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~---~~~~--------------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLD---RLDD--------------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-ccc---ccch--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 699999999999999999998 222 1222 257888999999999999999999986432
Q ss_pred --------------------------C-CchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 140 --------------------------P-LNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 140 --------------------------p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
| +....+|+.|-++...|+|.+|++.+++++.
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2 2456789999999999999999999999944
No 205
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.0069 Score=45.02 Aligned_cols=101 Identities=15% Similarity=0.068 Sum_probs=80.0
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.....+..++..++++.|+...+.++..-.+ ..+...+-.++|.+.+.+|++++|+..++.... +.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~ 156 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE--ES 156 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--cc
Confidence 4567888899999999999999999864221 245666788999999999999999888765532 22
Q ss_pred c-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 142 N-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 142 ~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
+ .-..-.+|.++...|+-++|...|++++..++++
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 2 2235679999999999999999999999988543
No 206
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.40 E-value=0.004 Score=55.89 Aligned_cols=63 Identities=5% Similarity=-0.062 Sum_probs=50.6
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
..|..+...+...|+++.|...+++++.++|++...|..++.+|...|++++|...++...+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 357777777778888888888888888888888888888888888888888888888776543
No 207
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.37 E-value=0.0012 Score=52.42 Aligned_cols=84 Identities=21% Similarity=0.155 Sum_probs=72.2
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
+.+-.+.|.-..+.|+.++|...+..|+.++|.++.++...|.....-++.-+|-++|-+|+.++|.|.++....++...
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 33446666777789999999999999999999999999999999999999999999999999999999998877666444
Q ss_pred HHHH
Q 028390 189 KQRE 192 (209)
Q Consensus 189 ~~~~ 192 (209)
-.+.
T Consensus 196 lV~~ 199 (472)
T KOG3824|consen 196 LVSA 199 (472)
T ss_pred HHHH
Confidence 3333
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.00052 Score=54.28 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=76.7
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+....+.|...|+.|+|+.|+..|+.|++...-.+. +-+|+|.|+++.++++.|+++..++++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------------lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------------LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------------hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4566788999999999999999999999998665554 5689999999999999999999988865
Q ss_pred C----CC-------------------------chHHHHHHHHHHhccCCHHHHHHHH
Q 028390 139 E----PL-------------------------NVKALYRRSQAHLKTSELEKAEADI 166 (209)
Q Consensus 139 ~----p~-------------------------~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (209)
. |. -..++..++-++++.++++.|...+
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 2 21 1356667788999999999988766
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.37 E-value=0.0052 Score=54.91 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=95.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHH
Q 028390 68 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY 147 (209)
Q Consensus 68 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 147 (209)
......+++..|+....+.++..|.... +..-.|.+.+++|++++|...++..-...+++...+-
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~---------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq 81 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALY---------------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ 81 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHH---------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence 4456778999999999998887666432 4566778899999999999665555556677777888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028390 148 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE 199 (209)
Q Consensus 148 ~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 199 (209)
-+-.||..++++++|...|+++...+|+ .+....+-.++-|.+.+++.++-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999 88888888888888888766553
No 210
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.36 E-value=0.0044 Score=55.61 Aligned_cols=140 Identities=12% Similarity=0.032 Sum_probs=91.6
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-C-------------hHH-HHHHHHH--------HHHHHhHHHH
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-T-------------DDE-KHQANGL--------RLSCYLNNAA 117 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~-------------~~~-~~~~~~~--------~~~~~~~~a~ 117 (209)
..|......+.+.|+.++|+..|.+.+...-. |+. + -++ ..-+... ....|..+..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 34566667777777777777777776542111 100 0 011 1111111 1235777888
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
.+.+.|++++|.+.+.+. ...| +...|..+..++...|+++.|...+++.+.+.|++......+..++.+..+..+..
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 888889999988887653 2334 45568888888999999999999999999999988777777888777776665543
Q ss_pred HHHHHhh
Q 028390 198 AEIFGTM 204 (209)
Q Consensus 198 ~~~~~~~ 204 (209)
+ .++.|
T Consensus 549 ~-v~~~m 554 (697)
T PLN03081 549 K-VVETL 554 (697)
T ss_pred H-HHHHH
Confidence 3 44444
No 211
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.36 E-value=0.0012 Score=56.88 Aligned_cols=67 Identities=13% Similarity=-0.037 Sum_probs=59.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+...|......|++++|...|++|+.+.+. ..+|..+|.++...|++++|+..|.+|+.++|.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3555677788899999999999999999763 247999999999999999999999999999999
Q ss_pred chH
Q 028390 142 NVK 144 (209)
Q Consensus 142 ~~~ 144 (209)
++.
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 875
No 212
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.33 E-value=0.0028 Score=44.21 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=67.1
Q ss_pred HHHHhHHHHHHHhhc---CHHHHHHHHHHHhh-hCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 109 LSCYLNNAACKLKLE---DYSETSSLCTKVLE-LEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
....+|+|++..... +..+.+..++.++. -.|. .....|.+|..++++++|+.|+.+.+..++.+|+|..+...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345688888887654 45577888888886 3343 366789999999999999999999999999999999998877
Q ss_pred HHHHHHHHH
Q 028390 184 MELKDKQRE 192 (209)
Q Consensus 184 ~~l~~~~~~ 192 (209)
..++..+.+
T Consensus 112 ~~ied~itk 120 (149)
T KOG3364|consen 112 ETIEDKITK 120 (149)
T ss_pred HHHHHHHhh
Confidence 777665543
No 213
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.32 E-value=0.0012 Score=38.48 Aligned_cols=40 Identities=30% Similarity=0.494 Sum_probs=33.1
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 150 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a 150 (209)
.++.+|..+.++|+|+.|..+++.+|+++|+|..+.-...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4678899999999999999999999999999988755443
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.02 Score=41.97 Aligned_cols=58 Identities=29% Similarity=0.388 Sum_probs=25.9
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 118 CKLKLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
++...++++.|+..+.+++..+| .....++.++..+...++++.|+..+.+++...|.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 44444444444444444444333 22333333444444444444444444444444444
No 215
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.27 E-value=0.06 Score=42.80 Aligned_cols=124 Identities=19% Similarity=0.114 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390 50 KMDTHEKIEACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET 128 (209)
Q Consensus 50 ~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 128 (209)
..++......+..+++-|...+.++ ++..|+..+.+|.++++.... .........+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3466677888999999999999999 999999999999999755211 01112334577888999999999998877643
Q ss_pred ---HHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390 129 ---SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174 (209)
Q Consensus 129 ---~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p 174 (209)
......+-.-.|+.+..++-.-.+..+.++.+.+...+.+.+.--+
T Consensus 104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3333334344577777775555666668999999999998887544
No 216
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.27 E-value=0.00054 Score=34.38 Aligned_cols=31 Identities=39% Similarity=0.557 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 145 ALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
+++++|.++..+++++.|...+.++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555443
No 217
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.25 E-value=0.00035 Score=58.23 Aligned_cols=66 Identities=29% Similarity=0.341 Sum_probs=61.1
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
+-+-+...++-+.|+.|+..|.+||+++|++...+-+++.++.+.++|..|+.++.++++++|...
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence 456677788899999999999999999999999999999999999999999999999999999753
No 218
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.23 E-value=0.00062 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.9
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+++++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999874
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.23 E-value=0.00064 Score=36.29 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=13.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 028390 146 LYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
+.++|.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555544
No 220
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.01 Score=44.02 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=88.4
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh-hCCCchHH
Q 028390 67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE-LEPLNVKA 145 (209)
Q Consensus 67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~ 145 (209)
+....++=+.+.++....+.+...|+.. -...+|.....+|++.+|...|..++. +--++...
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvq----------------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~ 126 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTVQ----------------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM 126 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhHH----------------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH
Confidence 3334444566666666666666655532 378899999999999999999999986 56778899
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHH
Q 028390 146 LYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~~~~~~ 196 (209)
+..++.+++..+++..|...+++..+-+|. .++..-.+.+....+.+..+.
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 999999999999999999999999999885 466666777776666655544
No 221
>PLN03077 Protein ECB2; Provisional
Probab=97.17 E-value=0.015 Score=53.43 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=86.3
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH--hhcCCCC-----------hHH-H---HHHH-----HHHHHHHhHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKII--EFHHSFT-----------DDE-K---HQAN-----GLRLSCYLNNAA 117 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~--~~~~~~~-----------~~~-~---~~~~-----~~~~~~~~~~a~ 117 (209)
...|......+.+.|+.++|+..|.+....- |+...+. -++ . ..+. ......|..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3457777788888888888888888876532 1111110 011 1 1111 112346777777
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
.+.+.|++++|.+.+++. .+.|+ ...|..+-.++...++.+.|....+++++++|++......+..++....+..+.
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 777788888887777654 34443 455656666667777788887778888888888888888888887666554443
No 222
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.16 E-value=0.00066 Score=36.22 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=24.6
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+|.++|.+|..+|+|++|++.|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 223
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.011 Score=50.72 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=83.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---------hHHHHH----H---H--HHHHHHHhHHHHHHHhh
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQ----A---N--GLRLSCYLNNAACKLKL 122 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~----~---~--~~~~~~~~~~a~~~~~~ 122 (209)
..++..-+.+...++|++|+..-.+.+...|++...- .+..+. + . .......+..|-|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 3455666677777888888888888777765543210 000000 0 0 11112235788999999
Q ss_pred cCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028390 123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 182 (209)
Q Consensus 123 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 182 (209)
++.++|+..++ -.++...+....+|++++++++|++|...|....+-+.++.+....
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999988 5667778889999999999999999999999998877666554443
No 224
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0096 Score=51.66 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=87.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
+...+.+.|...|+..+|..+++.|..++...+++-- +...+.+..+++.||+.+.+.+.|.+.+.+|=+.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~---------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY---------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh---------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 3445788899999999999999999999998776532 2334778999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+|.++-.-+....+...-+.-++|+..+......
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9999877777777777888888888877666543
No 225
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.13 E-value=0.024 Score=53.18 Aligned_cols=94 Identities=9% Similarity=-0.045 Sum_probs=42.1
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh----hC
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LE 139 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~ 139 (209)
......+.+.|++++|+..|.......- .++ ...|+.+...+.+.|++++|...+..... +.
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv-~PD-------------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNV-KPD-------------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCC-CCC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 3344455666777777666665543210 011 12344444444444444444444444432 12
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
|+ ...|..+..+|.+.|++++|...|+...+.
T Consensus 577 PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 577 PD-HITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22 233344444444444444444444444443
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.017 Score=45.10 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=81.9
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc---------CCCChH--HHHHHHHHH-HHHHhHHHHHHHhh----cCHH
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---------HSFTDD--EKHQANGLR-LSCYLNNAACKLKL----EDYS 126 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~---------~~~~~~--~~~~~~~~~-~~~~~~~a~~~~~~----~~~~ 126 (209)
....|..+...|++++|+........+.-.. ..+... +..++.+.- -.....+|..|.+. +++.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 3446777888999999988776543221110 000000 001111110 11233455555442 4577
Q ss_pred HHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 127 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
.|.-.|+..-+-.|..+..+...+.|...+++|++|...++.++.-++.+++.+..+--+.-.+.+
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 788888887776777888888888899999999999999999998888888887777665544433
No 227
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0081 Score=48.20 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=69.3
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
.+.-|-.-|.-|++-++|..|+..|+++|.....+ .-.|.+||-|...+|+|..|+.+..+++.++|.+..+.-.=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 45557788999999999999999999999875443 45688999999999999999999999999999986665544
Q ss_pred HHHHHHHHH
Q 028390 184 MELKDKQRE 192 (209)
Q Consensus 184 ~~l~~~~~~ 192 (209)
+.|.-.++.
T Consensus 160 Akc~~eLe~ 168 (390)
T KOG0551|consen 160 AKCLLELER 168 (390)
T ss_pred hHHHHHHHH
Confidence 444444443
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.035 Score=43.97 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=90.3
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH-------
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV------- 135 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------- 135 (209)
...+|......|++..|...|..++...+.... +...++.|+...|+.+.|...+...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---------------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSE---------------AKLLLAECLLAAGDVEAAQAILAALPLQAQDK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccch---------------HHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence 556788889999999999999999999877643 5788888898888887665555431
Q ss_pred ---------------------------hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 028390 136 ---------------------------LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRVVKLVYMEL 186 (209)
Q Consensus 136 ---------------------------l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~~l~~l 186 (209)
+.-+|++..+-+.+|..+...|+.+.|...+-..+..+- .+..+++.+-.+
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~ 281 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL 281 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 123699999999999999999999999999988887754 456777777666
Q ss_pred HHHHH
Q 028390 187 KDKQR 191 (209)
Q Consensus 187 ~~~~~ 191 (209)
-....
T Consensus 282 f~~~g 286 (304)
T COG3118 282 FEAFG 286 (304)
T ss_pred HHhcC
Confidence 65554
No 229
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.08 E-value=0.00032 Score=56.15 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 117 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
.-.+..|.++.|++.|..+|.++|.....|-.++.++.+++....|+.++..+++++|+...-..
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk 186 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc
Confidence 44456788999999999999999999999999999999999999999999999999998644333
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.07 E-value=0.019 Score=42.14 Aligned_cols=108 Identities=28% Similarity=0.267 Sum_probs=77.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-chHHHH
Q 028390 69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-NVKALY 147 (209)
Q Consensus 69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 147 (209)
.++..|+++.|...|.+++...+.... ....+...+..+...++++.|+..+.+++...+. ....+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 788889999999999998774442011 1234555555577788888888888888888888 688888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390 148 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 148 ~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
.++.++...+++..|...+..++...|........+.....
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 88888888888888888888888888874444444443333
No 231
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.07 E-value=0.0013 Score=32.93 Aligned_cols=32 Identities=41% Similarity=0.532 Sum_probs=29.5
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
++.++|.++..+++++.|+..+..++.++|.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 68899999999999999999999999988853
No 232
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.06 E-value=0.007 Score=44.47 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
|+.|.+.++.....+|.+.+++++.|.++..+.++ ++|+.-|+.|+.++|+...+.-.+....-.+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999888654 568888999999999998888777776655543
No 233
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.05 E-value=0.035 Score=52.11 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=40.9
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVKLVYMELK 187 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~l~ 187 (209)
.|+.+...+.+.|++++|.+.+....+.+ +.+...|..+..+|.+.|++++|...|+...+. .| +......+-...
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy 729 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 34444555555555555555555554432 233445555555555555555555555555432 23 233344444444
Q ss_pred HHHHHHHH
Q 028390 188 DKQREYAK 195 (209)
Q Consensus 188 ~~~~~~~~ 195 (209)
-+..+.++
T Consensus 730 ~k~G~~ee 737 (1060)
T PLN03218 730 CEGNQLPK 737 (1060)
T ss_pred HHCCCHHH
Confidence 44444433
No 234
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.01 E-value=0.0013 Score=51.80 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=38.5
Q ss_pred CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390 2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK 44 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~ 44 (209)
.|++|+...|.|.+++ ||..|. +.||||+.+.|+|+|+.+..
T Consensus 208 ~Mk~Gek~~l~IP~~laYG~~g~-~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 208 NIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred cCCCCcEEEEEECchhhCCCCCC-CCCCCCCcEEEEEEEEEecc
Confidence 6999999999999999 999985 47999999999999999864
No 235
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.025 Score=47.63 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=59.6
Q ss_pred HHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHH
Q 028390 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR-EYAK 195 (209)
Q Consensus 117 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~-~~~~ 195 (209)
..-.++++++.+...|.+-|+..|.+..+|...|..=..+|+.+.|...|+-|++...-+-......+-|.-.+. ..-+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 445577888888888888888888888888888888888888888888888887654333222222222222221 1223
Q ss_pred HHHHHHHhhhh
Q 028390 196 YQAEIFGTMLS 206 (209)
Q Consensus 196 ~~~~~~~~~~~ 206 (209)
+.+..|.++++
T Consensus 525 kaR~LYerlL~ 535 (677)
T KOG1915|consen 525 KARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHH
Confidence 55666666654
No 236
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.96 E-value=0.0015 Score=49.74 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=55.5
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~ 177 (209)
...+.++.+.|.+.+.+++.+-|.|...|+|+|.-..+.|+++.|.+.|++.++++|.+-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678899999999999999999999999999999999999999999999999999864
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.96 E-value=0.016 Score=46.11 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=86.4
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHhhhCCCch
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~ 143 (209)
...+...+.+..+.|...|.+|..... .. ..+|...|..-+. .++.+.|...++.++...|.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~-------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKR--CT-------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC--S--------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCC--CC-------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 344445555558899999999974211 11 2368888888666 5677779999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
..|..-..-+..+|+.+.|...|++++..-|... .++..+...+......... .+.++++
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v-~~v~~R~ 133 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESV-RKVEKRA 133 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence 9999999999999999999999999998877654 5666555555555443322 2344444
No 238
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.009 Score=46.73 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=69.4
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
.....+..|+=..+...++++.|....++.+.++|.++.-+--+|.+|.++|.+.-|+.++...++..|+++.+....
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 445556778888899999999999999999999999999999999999999999999999999999999987765433
No 239
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.95 E-value=0.022 Score=52.59 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=69.3
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.....|..+...|+++.|...+.+++......... .....++.++|.++...|++++|...+.+++.+-..
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34456667777788888888888887765543221 122345677788888888888888888887765211
Q ss_pred --------chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 142 --------NVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 142 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
....+..+|.++...|++++|...+.+++.+
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 1233456777888888888888888887765
No 240
>PLN03077 Protein ECB2; Provisional
Probab=96.94 E-value=0.036 Score=51.04 Aligned_cols=92 Identities=14% Similarity=0.004 Sum_probs=70.3
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+....+.+.+.|++++|.+.+.+. +-.++ ..+|..+-..+..-++.+.+.....++++++|++
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM----PITPD-------------PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC----CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 444555666677777777766543 11222 3356666666677899999999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
...|..++.+|...|+|++|....+...+
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999999999999988877654
No 241
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=96.94 E-value=0.12 Score=43.26 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cC-----HHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--ED-----YSET 128 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~-----~~~A 128 (209)
.+.........|..++..|+|.+|+..|+..|...+-....+.++..+..++...+...+-.+-+.+ +. .+..
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 3444555667899999999999999999999998776555555666777777666544333333332 22 2233
Q ss_pred HHHHHHH-----hhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390 129 SSLCTKV-----LELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 129 ~~~~~~a-----l~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
.+.++.+ .++.|.+...-++.| ...++.++|..|....++.+++.|..+.+.+
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2333333 355666666666666 4678999999999999999999998765443
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.022 Score=43.98 Aligned_cols=129 Identities=16% Similarity=0.112 Sum_probs=84.2
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh----hhC-
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL----ELE- 139 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~- 139 (209)
+++-......++++|+..|++++.+...+.+. +.-..++...+.++.+++.|.+|-..+.+-. ..+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 34444445667788888888888887665442 3445678888899999999999987776643 233
Q ss_pred -CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390 140 -PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKLVYMELKDKQREYAKYQAEIFGTML 205 (209)
Q Consensus 140 -p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 205 (209)
+...+++...-.+|...+|+..|...++..-++..- .++--+ .+...+.-+.+.+-..+++|.
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r---~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR---SLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH---HHHHHHHHhccCCHHHHHHHH
Confidence 344566777778888888999999999987665321 122222 233334455555555555553
No 243
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.85 E-value=0.026 Score=41.79 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..-..+...|+-+.+.|+++.|++.|.++....... ...+.++.++-.+.+..++|..+..+..++-.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345567899999999999999999999988765443 23567889999999999999999999998876
Q ss_pred hCC--Cch----HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 138 LEP--LNV----KALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 138 ~~p--~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
+-. .++ +.....|..+...++|..|...|-.+..
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 532 222 2344467788889999999888866643
No 244
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.04 Score=46.66 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028390 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT 156 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 156 (209)
..=+..|+.|...++.+.. +|.+-.....+.+.+.+--..|..++..+|+++..|..-|.=.+..
T Consensus 88 ~rIv~lyr~at~rf~~D~~---------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~ 152 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVK---------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI 152 (568)
T ss_pred HHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence 3345678888888776554 5666655555667799999999999999999999999999877777
Q ss_pred CC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 157 SE-LEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 157 ~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
+. .+.|.+.+.+++.++|+++..+..+-++.
T Consensus 153 n~ni~saRalflrgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 153 NLNIESARALFLRGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred ccchHHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 76 99999999999999999999988776653
No 245
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.82 E-value=0.015 Score=37.97 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHH
Q 028390 128 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYMELKDKQREY 193 (209)
Q Consensus 128 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~l~~~~~~~ 193 (209)
.+..+...+..+|++..+.+.+|.++...|+++.|+..+-.++..+++. ..+++.+-.+-+.+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4667888999999999999999999999999999999999999998764 77777777777766553
No 246
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.81 E-value=0.025 Score=52.21 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=79.5
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL- 141 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~- 141 (209)
....|..++..|+++.|...+..++...+.... .....+...+|.++...|++++|...+.+++.....
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY----------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 334678888999999999999999986433211 123446788999999999999999999999875322
Q ss_pred ---c--hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 142 ---N--VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 142 ---~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
. ..++..+|.++...|+++.|...+.+++.+
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 346778899999999999999999999886
No 247
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.76 E-value=0.032 Score=37.68 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=68.9
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC-----------HHHHHHHHHH
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-----------YSETSSLCTK 134 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~ 134 (209)
.+..++.+|++-+|++...+.+..-+.+... ..++..-|.++..+.. .-.+++.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~ 69 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSR 69 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch------------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHH
Confidence 5678999999999999999999876655432 1234444544443321 3467778888
Q ss_pred HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+..+.|.....+|.+|.-+.....|+++....++++.+
T Consensus 70 a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 70 AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888888887777777778888777777765
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.077 Score=41.61 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=65.6
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh----h--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----L--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
+....+...+|.+.++.|+-+.|..+++++-. + ...+.-+..+.+.+|.-.+++..|...+.+++..||.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 55677888999999999999999999985532 2 23445667778888888899999999999999999998877
Q ss_pred HHHHHHHH
Q 028390 180 KLVYMELK 187 (209)
Q Consensus 180 ~~~l~~l~ 187 (209)
.+..+.|.
T Consensus 289 ~NnKALcl 296 (366)
T KOG2796|consen 289 NNNKALCL 296 (366)
T ss_pred hchHHHHH
Confidence 66555544
No 249
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.029 Score=43.81 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=59.6
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHH-HHHHHHHHhcCCCCHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKA-EADIKRALTIDPNNRVV 179 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~l~p~~~~~ 179 (209)
.+.+..+.|++.+++|++|...+..++.-+++++..+.++-.+-..+|.-.++ .+.+.+....+|.++-+
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 46899999999999999999999999999999999999999998888876554 44555666678887655
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.054 Score=43.86 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=83.5
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-CCC
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPL 141 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~ 141 (209)
....+...+..|.+.+|...+.+.+.-.|++-- ++...-..++.+|+...-...+.+++.. +|+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll---------------a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d 170 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL---------------AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD 170 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhh---------------hhhhhhhHHHhccchhhhhhHHHHhccccCCC
Confidence 344556677888999998889988887776532 2344445566677777777777777766 444
Q ss_pred c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390 142 N---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFG 202 (209)
Q Consensus 142 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 202 (209)
- .-..--.+.++...|-+++|...-+++++++|.|.=+.-.++.+.+.-...++.-..+|+
T Consensus 171 lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 171 LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 3 333334566778888888888888888888888766666666666555555544444443
No 251
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.60 E-value=0.0077 Score=47.99 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
..+.+..-...+....+.|+.++|...|..|+.+.|+.+. ++..+|...-.-++.-+|=.+|.+|
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------------~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------------ILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------------HHHHHhHHHHhhhhhHhhhhhhhee
Confidence 3445556667888889999999999999999999887654 6788888887778888999999999
Q ss_pred hhhCCCchHHHHHHHHHH
Q 028390 136 LELEPLNVKALYRRSQAH 153 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~ 153 (209)
+.++|.|.+++.+++...
T Consensus 177 LtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 177 LTISPGNSEALVNRARTT 194 (472)
T ss_pred eeeCCCchHHHhhhhccc
Confidence 999999999999987543
No 252
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.58 E-value=0.15 Score=43.21 Aligned_cols=127 Identities=12% Similarity=0.152 Sum_probs=98.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+...|.--...++++.|.+.|..||..... .+.+|..-+.+-++.+....|....++|+.+-|
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 34555566666788999999999999986433 245899999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
.-.+.||...-.=..+|+...|.+.|++=++..|+ ..++..+-.-.-+.++.. .-+.+|.+.
T Consensus 139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeie-raR~IYerf 200 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIE-RARSIYERF 200 (677)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999996 344443433333333333 335566553
No 253
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.0098 Score=50.15 Aligned_cols=120 Identities=18% Similarity=0.042 Sum_probs=87.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHhHHHHHHHhhcCHHHHHHHHHHHhh-h
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGL-RLSCYLNNAACKLKLEDYSETSSLCTKVLE-L 138 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~ 138 (209)
..+.-+.+..|-.|+|+.|.+.....=.- ..+.++ ...++ .-..++|+|-+++.++.|..++.++.+|++ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~--~~~g~~-----~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIH--KEAGGT-----ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccc--cccCcc-----ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 34455667777788888887776532111 011100 00111 223579999999999999999999999995 2
Q ss_pred C--------C---------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 139 E--------P---------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 139 ~--------p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
+ | .....+|+.|..|...|+.-.|.++|.++.+..-.||-.|-.++.|=
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 1 23567999999999999999999999999999999999999988863
No 254
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.52 E-value=0.029 Score=45.99 Aligned_cols=111 Identities=20% Similarity=0.060 Sum_probs=64.5
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
....+..+...|++++|.+...+++...-+. .++.-. -....+++..=++..++.+...|++
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~----------------~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDP----------------RLCRLI--PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCh----------------hHHHHH--hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 3456677788999999999999888752211 011111 1124455555566666666666666
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+..++.+|..+.+.+.|.+|..+|+.+++.-|+. +....++.+...+.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~ 376 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGE 376 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCC
Confidence 6666666666666666666666666666665542 333444444444433
No 255
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.50 E-value=0.028 Score=35.47 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=54.9
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
.+....+.|..+|.+.+.+.|+..+.+++...++.+ ....++-.+..+|...|+|.+.+.+...=+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677999999999999999999999999766532 3567788888999999999998887755443
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.47 E-value=0.037 Score=43.82 Aligned_cols=106 Identities=12% Similarity=0.106 Sum_probs=81.6
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
..|......+.+..+...+..+... .++++. ..++..+.+..+.++..++..+...++++.++..+++.+..+|-
T Consensus 108 ~a~~~~~~~~~~~~~~~~~~~g~~~--~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~ 185 (280)
T COG3629 108 RAGLKARAGLRFEQAGELLSEGPVL--GDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPY 185 (280)
T ss_pred hcccchhhhHHHHHHHHHhhcCCcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc
Confidence 3444455545556665555541110 111111 24456788889999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+..+|.++-.+|+..|+...|+..|++.-++
T Consensus 186 ~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 186 DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999988764
No 257
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.022 Score=44.04 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=65.1
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh--------CCC----------chHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL--------EPL----------NVKALYRRSQAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 169 (209)
.+.++...|.-++++|+|.+|...|..|+.. .|. ....+.+.++|+...|+|-+++.....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3457888999999999999999999998732 232 3457899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHH
Q 028390 170 LTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 170 ~~l~p~~~~~~~~l~~l 186 (209)
+..+|.|..+....++.
T Consensus 257 L~~~~~nvKA~frRakA 273 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKA 273 (329)
T ss_pred HhcCCchHHHHHHHHHH
Confidence 99999987776554443
No 258
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.45 E-value=0.15 Score=36.06 Aligned_cols=91 Identities=23% Similarity=0.249 Sum_probs=65.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhC---------C-Cc------------hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390 113 LNNAACKLKLEDYSETSSLCTKVLELE---------P-LN------------VKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~---------p-~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
...|......++.+.++..+.+++.+- + .+ ..+...++.++...|+++.|+..+.+++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334445556678888888888888663 1 11 3456667888999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 171 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 171 ~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
.++|.+..+...+..+....+.....- ..|.++
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~-~~Y~~~ 122 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEAL-RVYERY 122 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHH-HHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHH-HHHHHH
Confidence 999999999999999988887776543 345443
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.34 E-value=0.054 Score=45.92 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=57.3
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-CCCc
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPLN 142 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~ 142 (209)
+..|.++.+.|+.++|++.|...++.+|.... ..++.|+..|++.++.|.++...+.+--++ -|.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 45666666677777777777776665553222 335667777777777777766655554322 1344
Q ss_pred hHHHHHHHHHHhc-cCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q 028390 143 VKALYRRSQAHLK-TSE---------------LEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 143 ~~~~~~~a~~~~~-~~~---------------~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
....|..|..-.+ .++ ...|.+.+.+|++.+|..+.-.-
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 4444444432211 111 12355666677777666554433
No 260
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.33 E-value=0.065 Score=42.68 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=73.3
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK-TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
+|........+.+..+.|...+.+|+...+.+...|...|..-+. .++.+.|...|+.+++..|.+...+..+..-.-.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 355555666667779999999999997777789999999999555 6777779999999999999999888887777666
Q ss_pred HHHHHHHHHHHHHhhhhcC
Q 028390 190 QREYAKYQAEIFGTMLSKM 208 (209)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ 208 (209)
+.+.. .-|..|.+.++.+
T Consensus 83 ~~d~~-~aR~lfer~i~~l 100 (280)
T PF05843_consen 83 LNDIN-NARALFERAISSL 100 (280)
T ss_dssp TT-HH-HHHHHHHHHCCTS
T ss_pred hCcHH-HHHHHHHHHHHhc
Confidence 66554 4477777766554
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.061 Score=42.93 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=78.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390 70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR 149 (209)
Q Consensus 70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 149 (209)
+.+..+|.+|+....--.+..|.. ...+.-+|.||....+|..|...|+..-.+.|...+..+.-
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~---------------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRS---------------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 356677777777766555544322 23578999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 150 SQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 150 a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
|+.+++-+.+.+|+....... +++..+...-.++..++
T Consensus 85 AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence 999999999999987665443 44666665555555543
No 262
>PRK10941 hypothetical protein; Provisional
Probab=96.25 E-value=0.063 Score=42.46 Aligned_cols=78 Identities=12% Similarity=-0.104 Sum_probs=66.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
..-+.+.-..+.+.+++..|+..-...+.+.|+++. -+.-+|.+|.++|.+..|+.+++.-++.+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------------e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------------EIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 344556667788999999999999999999988775 37889999999999999999999999999
Q ss_pred CCchHHHHHHHHH
Q 028390 140 PLNVKALYRRSQA 152 (209)
Q Consensus 140 p~~~~~~~~~a~~ 152 (209)
|+.+.+-.-+..+
T Consensus 246 P~dp~a~~ik~ql 258 (269)
T PRK10941 246 PEDPISEMIRAQI 258 (269)
T ss_pred CCchhHHHHHHHH
Confidence 9998876555443
No 263
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=96.22 E-value=0.033 Score=44.11 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028390 98 DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 169 (209)
+++++.+.++...++...|..|...|.+.+|++.+++++.++|-+...+.-+-.++..+||--.|...|++.
T Consensus 268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 467788899999999999999999999999999999999999999999999999999999988888877665
No 264
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.22 E-value=0.01 Score=32.12 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+++++|.+|..+|++++|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777778888887777777754
No 265
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.14 E-value=0.029 Score=48.42 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=92.6
Q ss_pred HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ 151 (209)
Q Consensus 72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 151 (209)
-+|+..+|+.+|..|+.+.+.... -.+...+|.+..+.|...+|--.+.-|+.--|.-...+|.++.
T Consensus 225 ~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~ 291 (886)
T KOG4507|consen 225 IKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN 291 (886)
T ss_pred HcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence 479999999999999998766433 2368899999999999999988887777766666677999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 152 AHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 152 ~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
++..++++......|..+.+..|.-. ......-.|..++.+.-+++.+-.+.|
T Consensus 292 i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~ 347 (886)
T KOG4507|consen 292 IYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT 347 (886)
T ss_pred HHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988642 223444455555555555555544444
No 266
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=96.10 E-value=0.11 Score=35.79 Aligned_cols=119 Identities=14% Similarity=0.045 Sum_probs=81.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH----hh
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV----LE 137 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~ 137 (209)
.+...|+..++.+++-.|+-+|++|+.+...-....+.+.++.-...+....|+|..|..+|+.+-.++++.-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999987665333334445555556667899999999999999999888654 45
Q ss_pred hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+-|..+..-+. .-...+|....|+-+| ++..| ||.+.+....+
T Consensus 83 LiPQCp~~~C~--afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~i 125 (140)
T PF10952_consen 83 LIPQCPNTECE--AFIDSLGCCKKALLDF---MKRHP-NPEIARLVQHI 125 (140)
T ss_pred hccCCCCcchH--HHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHhc
Confidence 55554332111 0123566667776665 56667 46665555443
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.08 E-value=0.21 Score=42.45 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=97.6
Q ss_pred cCCCCCCceEEEEEEEcccccCCC----CCC-CCHHHHHHHHHHHHHHhHH----HH-----HcCCHHHHHHHHHHHHHH
Q 028390 24 SELVSADSVLHYEVTLIDFTKEKP----FWK-MDTHEKIEACERKKHDGNL----LF-----RAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 24 ~~~ip~~~~l~~~~~l~~~~~~~~----~~~-~~~~~~~~~a~~~~~~g~~----~~-----~~~~~~~A~~~y~~al~~ 89 (209)
+..-..+.+-.|..+--....+.+ .|. -+...+.+.|..-.+.-.. +. ...-..+|..+|.+|++.
T Consensus 150 MNLSAQDHQtfFtcd~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 150 MNLSAQDHQTFFTCDTDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA 229 (539)
T ss_pred CCccccccceeEecCCCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH
Confidence 333444445555544444433222 232 2555566655544333321 21 133478899999999987
Q ss_pred HhhcCCCCh----------HHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhccC
Q 028390 90 IEFHHSFTD----------DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTS 157 (209)
Q Consensus 90 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~ 157 (209)
....-.... ....+.-....-+-..+|.|..++|+.++|++.+...++..|. +...++++..++..++
T Consensus 230 gE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq 309 (539)
T PF04184_consen 230 GEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQ 309 (539)
T ss_pred HHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcC
Confidence 554322111 0001111223445678999999999999999999999987665 5678999999999999
Q ss_pred CHHHHHHHHHHHHhc-CCCCHHHH
Q 028390 158 ELEKAEADIKRALTI-DPNNRVVK 180 (209)
Q Consensus 158 ~~~~A~~~~~~a~~l-~p~~~~~~ 180 (209)
.+.++...+.+.-.. -|....+-
T Consensus 310 ~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 310 AYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred CHHHHHHHHHHhccccCCchHHHH
Confidence 999999998887544 24444443
No 268
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.03 E-value=0.17 Score=47.95 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=53.3
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
.|...+...+...+-+.|...+.+|+..=|. +....-..|..=++.||-+.+...|+-.+.-+|.-.+.|..+.+..
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 5666677777777777777777777777666 6666667777777777777777777777777776666666555443
No 269
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.03 E-value=0.16 Score=34.86 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=60.6
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+-++-..+..+...|+|++++..-..++.+++......+++ ..+++.+-+++|..+-.+|..++|+..+..+-++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 355666777888899999999999999999998876654433 4678889999999999999999999999988654
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.94 E-value=0.44 Score=40.20 Aligned_cols=137 Identities=7% Similarity=0.083 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhHHHHHcCC-HHHHHHHHHHHHHHHhhcCCCC---------------------h----HHH-------
Q 028390 55 EKIEACERKKHDGNLLFRAGK-YWRASKKYEKAAKIIEFHHSFT---------------------D----DEK------- 101 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~---------------------~----~~~------- 101 (209)
++.+.++-+..-|..+.+.|. -++|++....++...+.+.... . ++.
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 456778888888888898888 6778887777776544432100 0 000
Q ss_pred -HHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCHHH
Q 028390 102 -HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID-PNNRVV 179 (209)
Q Consensus 102 -~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~ 179 (209)
....+....=+..=|...+..|+|.+|.-+..=+.++.| ++.++-.+|.|++...+|++|-.++.....-+ -.|..+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskv 532 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKV 532 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHH
Confidence 001111122234456677789999999999999999999 89999999999999999999998886543210 124677
Q ss_pred HHHHHHHHHHHHH
Q 028390 180 KLVYMELKDKQRE 192 (209)
Q Consensus 180 ~~~l~~l~~~~~~ 192 (209)
.+++..|++.+.+
T Consensus 533 qKAl~lCqKh~~k 545 (549)
T PF07079_consen 533 QKALALCQKHLPK 545 (549)
T ss_pred HHHHHHHHHhhhh
Confidence 7778888776643
No 271
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.87 E-value=0.11 Score=34.14 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
...+.|+|..|++.+.+............. ......+..++|.++...|++++|+..+.+++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456789999999999999887655332100 1123345677778888888888888888887765
No 272
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.83 E-value=0.014 Score=44.65 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=54.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390 68 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 68 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
....+.++.+.|.+.|++++.+.|.+.. -|..+|....+.|+++.|...|.++++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~---------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAA---------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhh---------------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999999888765 589999999999999999999999999998763
No 273
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.79 E-value=0.42 Score=45.49 Aligned_cols=118 Identities=21% Similarity=0.119 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
++++.-.++.+.=+.+ |.-+.-.+.|.+|.+++.. -.+|..++.+|.+-+++++|.+.++.
T Consensus 1495 EKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~----------------~~V~~~L~~iy~k~ek~~~A~ell~~ 1555 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA----------------YTVHLKLLGIYEKSEKNDEADELLRL 1555 (1710)
T ss_pred HHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch----------------HHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3444444444443333 4555566667777776433 24689999999999999999999999
Q ss_pred HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Q 028390 135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQR 191 (209)
Q Consensus 135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~ 191 (209)
-+.-.....+.|...|..+...++-+.|...+.+|++.-|. +.+.....+.+.-...
T Consensus 1556 m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1556 MLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 88876688999999999999999999999999999999997 5666666666654443
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.78 E-value=0.39 Score=38.20 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=75.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHh-hcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhh----CC---
Q 028390 70 LFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL----EP--- 140 (209)
Q Consensus 70 ~~~~~~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p--- 140 (209)
..+.|+++.|...|.++-.+.+ .++. .-......++|.|......+ +++.|+..++++.++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~--------~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPD--------MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcH--------HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 3578999999999999988763 2222 12456778999999999999 999999999999887 21
Q ss_pred Cc-------hHHHHHHHHHHhccCCHHH---HHHHHHHHHhcCCCCHHHH
Q 028390 141 LN-------VKALYRRSQAHLKTSELEK---AEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 141 ~~-------~~~~~~~a~~~~~~~~~~~---A~~~~~~a~~l~p~~~~~~ 180 (209)
.. ...+..++.+|...+.++. |...++.+..-.|+.+.+.
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 11 3456778999999887664 4444445545567766655
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.74 E-value=0.6 Score=37.90 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=96.4
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+..+...+..+.+.|.++.|...+.++....+..... ...+....+......|+..+|+..+...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446678888999999999999999999988765332210 123577788888899999999998888776
Q ss_pred h--C-C-------------------------------CchHHHHHHHHHHhcc------CCHHHHHHHHHHHHhcCCCCH
Q 028390 138 L--E-P-------------------------------LNVKALYRRSQAHLKT------SELEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 138 ~--~-p-------------------------------~~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~l~p~~~ 177 (209)
. . + ...++++.+|.-...+ ++.+.+...|..+.+++|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1 1 0 0145677777777777 889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028390 178 VVKLVYMELKDKQREYAK 195 (209)
Q Consensus 178 ~~~~~l~~l~~~~~~~~~ 195 (209)
.++..++.....+-....
T Consensus 293 k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 293 KAWHSWALFNDKLLESDP 310 (352)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888887776644443
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.72 E-value=0.48 Score=38.46 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=84.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHH-HHhhcCCCC------------------hHHHHHHHHHHHHHHhHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAK-IIEFHHSFT------------------DDEKHQANGLRLSCYLNNAACKL 120 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~a~~~~ 120 (209)
.....+.+..+...|+..+|+......+. ......... .............++..+|....
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999998888 333221100 00123345566788888888888
Q ss_pred hh------cCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH-----------------HHHHHHHHHHHhcCCC
Q 028390 121 KL------EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-----------------EKAEADIKRALTIDPN 175 (209)
Q Consensus 121 ~~------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-----------------~~A~~~~~~a~~l~p~ 175 (209)
.. +.+++++..|..++.++|.+.++++..|..+..+=+. ..|+..|-+++.+.|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 88 9999999999999999999999999998877655322 2377777777777766
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.69 E-value=0.16 Score=41.64 Aligned_cols=106 Identities=17% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 139 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 139 (209)
.+...|..+-..+++++|+.+-.+|..+.....-. ++ ....+..+.+.++..+..+|....|.+.|+++.++-
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~---d~--~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK---DW--SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC---ch--hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 35567777888899999999999999887654311 11 113345567889999999999999999999987662
Q ss_pred ----CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 140 ----PLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 140 ----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+-....+..+|.+|...|+.+.|..-|+.|+..
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 233555677899999999999999999999865
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.77 Score=35.78 Aligned_cols=128 Identities=18% Similarity=0.121 Sum_probs=82.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 138 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 138 (209)
+..+...++.+...++|++|...+.+|+.......+.. --+.+|-..+.....+..|.++...++++..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455666777778899999999999986655443311 02345667777777888888888888888765
Q ss_pred ----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHH
Q 028390 139 ----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 139 ----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~~~~~ 196 (209)
.|+....-..+|-=.....+.++|++.|.+++.+-..+ .+....++++.-+++++.+.
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 24433334444444556678888999999888764322 23333445555566666554
No 279
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.57 E-value=0.18 Score=46.55 Aligned_cols=122 Identities=9% Similarity=-0.041 Sum_probs=91.1
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-------cCHHHHHHHHHHH
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-------EDYSETSSLCTKV 135 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~A~~~~~~a 135 (209)
+..-.+.+...+.|+.|+..|++...-+|..... -.+.+..|...+.. ..+.+|+..+++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 4456778888899999999999998888875543 12345555555432 2466666666554
Q ss_pred hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 197 (209)
Q Consensus 136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~ 197 (209)
.-.|.-+--|...|.+|..+|++++-++.|.-|++..|.+|.+......+-.|+.+.--+.
T Consensus 546 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (932)
T PRK13184 546 -HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH 606 (932)
T ss_pred -cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 2345556678999999999999999999999999999999999888888777776654433
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.57 E-value=0.26 Score=35.72 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=40.8
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
+.....+-...++.+.+...+.-+--+.|..+..-..-|..+...|+|.+|+..|+.+..-.|..+-+...++.|...+
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 3444444444455555555554444555555555555555555555555555555555555555555555555544433
No 281
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.96 Score=38.60 Aligned_cols=99 Identities=22% Similarity=0.253 Sum_probs=74.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+.-..-.|.-...-+.|+.|...|..|++.... .++.+-+-.|+|.+|+..++-+.-.+.++. +.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~ 431 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAEDLYKALDL---IG 431 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cC
Confidence 334455666667778999999999999987543 245666789999999998876554333333 34
Q ss_pred CCc----------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 140 PLN----------VKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 140 p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
|.| ..++|..|...+.++++.+|...+.+.++..
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 443 3568889999999999999999999999876
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.47 E-value=0.26 Score=42.32 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=58.0
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
......|.++...|+.++|++.+++++...... .-.++.+|.++..+.+|++|..++.+..+.+.-+...
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence 357889999999999999999999998644333 3457889999999999999999999999877654433
No 283
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.45 E-value=0.038 Score=29.77 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
..++.++|.+|..+|++++|...+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356889999999999999999999999875
No 284
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.31 E-value=0.32 Score=31.82 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=45.7
Q ss_pred HHhhcCHHHHHHHHHHHhhhCCC---------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390 119 KLKLEDYSETSSLCTKVLELEPL---------NVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174 (209)
Q Consensus 119 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p 174 (209)
....|+|..|++.+.+..+.... ...+++++|.++...|++++|+..+++++.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45789999998888887765321 246788999999999999999999999998843
No 285
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.17 E-value=0.029 Score=47.47 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=68.7
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHH-HHhhcCCC-Ch-HHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAK-IIEFHHSF-TD-DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+.+.|..+|+.|.|..+..+|.+|++ .+..-... .+ -.......-.-.+.+|.|..|+..|++-.|.+.+.++...-
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 45788899999999999999999996 32211000 00 00000011122368999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhc
Q 028390 140 PLNVKALYRRSQAHLK 155 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~ 155 (209)
..++..|.|+|.|.+.
T Consensus 366 h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCIM 381 (696)
T ss_pred hcCcHHHHHHHHHHHH
Confidence 9999999999998764
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.08 E-value=0.96 Score=33.43 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=57.2
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
...++..+|..|.+.|+++.|++.|.++.+.+... ...++++-.+....++|.....++.++-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999999988876443 677899999999999999999999999776
No 287
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.70 E-value=0.28 Score=31.95 Aligned_cols=48 Identities=15% Similarity=-0.000 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 80 SKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 80 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+..+.+++...|.+. .+.+.+|..++..|++++|++.+..++..++++
T Consensus 8 ~~al~~~~a~~P~D~---------------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDL---------------DARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 455667777666543 478999999999999999999999999999887
No 288
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.51 E-value=0.078 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+++..+|.+-...++|+.|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777654
No 289
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.50 E-value=0.15 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHH--HHHHHhcCCCC
Q 028390 144 KALYRRSQAHLKTSELEKAEAD--IKRALTIDPNN 176 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~--~~~a~~l~p~~ 176 (209)
+.++.+|-.++..|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3456666666677777777766 44555555543
No 290
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.45 E-value=0.24 Score=38.90 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390 128 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 128 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
|..+|..|+.+.|.+...|..+|.+....|+.-.|+-+|-+++-.....+.+...+..+-+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997755558888888877766
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.44 E-value=0.19 Score=28.06 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
+.+|.+|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.44 E-value=1.2 Score=33.50 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHH------HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-ch--H
Q 028390 74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQAN------GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-NV--K 144 (209)
Q Consensus 74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~--~ 144 (209)
++...|-..|.+++..............+++. .+-...-..+|..+...+++++|+..+..++....+ +. -
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 44557888899988876543332111222221 222334567788889999999999999999865433 33 3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 028390 145 ALYRRSQAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~a 169 (209)
+-.|+|.++..+|.+++|+..+...
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 5688999999999999999887654
No 293
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.35 E-value=0.086 Score=42.25 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=65.3
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHH-HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR-RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+|...+....+.|.|.+--..|..+++..|.|++.|.. -+.-+...++++.+...+.+++.++|++|.++.+.-+.
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 46666666677888999999999999999999999877 56678889999999999999999999999988766554
No 294
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.35 E-value=0.5 Score=36.11 Aligned_cols=83 Identities=14% Similarity=0.055 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHcCCH-------HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKY-------WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 132 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~-------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 132 (209)
|..+...|-.+...|+. ..|+..|.+|+........ . -....+.+-+|..+.++|++++|+..+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~--------~~~~~l~YLigeL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-G--------MDEATLLYLIGELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-C--------chHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44444455555555664 4455555555553322111 1 112447789999999999999999999
Q ss_pred HHHhhhCCCch-HHHHHHHH
Q 028390 133 TKVLELEPLNV-KALYRRSQ 151 (209)
Q Consensus 133 ~~al~~~p~~~-~~~~~~a~ 151 (209)
.+++.....+. ..+..+|.
T Consensus 189 s~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 189 SRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHcCCCCCCcHHHHHHHH
Confidence 99998654433 35555554
No 295
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.34 Score=42.55 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=61.6
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
++-|-|.-.++..+|..+++.|...+..-|.+ .+..-.++.||..+.+.+.|..++..|-+.+|.++-......
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 44566778889999999999999999876544 566777899999999999999999999999998876555443
No 296
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.28 E-value=0.075 Score=28.64 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+|..+|.+-+..++|++|+.+|.+++.+.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999763
No 297
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.11 E-value=0.48 Score=42.97 Aligned_cols=76 Identities=7% Similarity=0.055 Sum_probs=69.0
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
..++|.+|+..+.++++..|+..-+....|..+.++|..++|...++..-.+-++|......+..|++++++..+.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 4578999999999999999999999999999999999999999888777777888999999999999999887654
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=2.2 Score=33.15 Aligned_cols=106 Identities=21% Similarity=0.128 Sum_probs=74.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
++.+...|+.+--.+.|..|=..|-++-.+--...+. ......|...+.||.+ .+..+|+..+++++++-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~sk---------hDaat~YveA~~cykk-~~~~eAv~cL~~aieIy 103 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSK---------HDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIY 103 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHH
Confidence 4444455555555677888888888887654332221 2235578888888854 49999999999999875
Q ss_pred CCc------hHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCC
Q 028390 140 PLN------VKALYRRSQAHLKT-SELEKAEADIKRALTIDPN 175 (209)
Q Consensus 140 p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~l~p~ 175 (209)
.+- .+-+..+|..|..- .+++.|+.+|+.+-+....
T Consensus 104 t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 104 TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 432 34456788888766 8999999999999877543
No 299
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=94.02 E-value=0.72 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~ 93 (209)
+.+..+..+|..+-+.|++.+|+.+|++|++.+..-
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 346677889999999999999999999999987653
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.95 E-value=0.42 Score=39.56 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCChHHH--HHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh---------hh----
Q 028390 74 GKYWRASKKYEKAAKIIEFHHSFTDDEK--HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL---------EL---- 138 (209)
Q Consensus 74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---------~~---- 138 (209)
..|.++-..|..++..... +... -+..+.++..+..++.++..+|+.+.|.+.+++|| .+
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp-----~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~ 82 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDP-----NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFR 82 (360)
T ss_pred HHHHHHHHHHHHHHHccCH-----HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456666666666653211 0011 11233467789999999999999999999999987 22
Q ss_pred -C------------CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CHHHHH
Q 028390 139 -E------------PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKL 181 (209)
Q Consensus 139 -~------------p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~ 181 (209)
+ +.| ..++++....+.+.|.+..|.++.+-.+.++|. |+-...
T Consensus 83 ~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~l 142 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVL 142 (360)
T ss_pred cccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhH
Confidence 1 112 457788899999999999999999999999998 764443
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.92 E-value=4.4 Score=36.07 Aligned_cols=108 Identities=20% Similarity=0.085 Sum_probs=84.6
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC-------CCC----hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-------SFT----DDEKHQANGLRLSCYLNNAACKLKLEDYSET 128 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 128 (209)
+..+.--|......+..++|.+++.+|++...... ..+ .+.......+...+....+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 55566678888889988899999999998876644 111 1223345566777888999999999999999
Q ss_pred HHHHHHHhhhC---C------CchHHHHHHHHHHhccCCHHHHHHHHH
Q 028390 129 SSLCTKVLELE---P------LNVKALYRRSQAHLKTSELEKAEADIK 167 (209)
Q Consensus 129 ~~~~~~al~~~---p------~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (209)
......+.... | ..+..+|-.|..+...|+.+.|...|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99888777553 2 237778999999999999999999998
No 302
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.4 Score=39.03 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=62.6
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 144 (209)
---..+|..|....-...+.+.+-.-+.+- +...-+.--.+.+....|-|++|.+...++++++|.+.-
T Consensus 142 fsh~a~fy~G~~~~~k~ai~kIip~wn~dl-----------p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 142 FSHDAHFYNGNQIGKKNAIEKIIPKWNADL-----------PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW 210 (491)
T ss_pred hhhhHHHhccchhhhhhHHHHhccccCCCC-----------cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH
Confidence 334455566666666666666554311111 112234455677888999999999999999999998887
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 028390 145 ALYRRSQAHLKTSELEKAEADIKR 168 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~ 168 (209)
+...++-++...+++.++.+++.+
T Consensus 211 a~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 211 ASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHh
Confidence 777777777777777777665543
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.81 E-value=1.8 Score=31.34 Aligned_cols=113 Identities=10% Similarity=-0.058 Sum_probs=81.8
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+..+.+........++.+++...+...-.+-|..+ .+-..-|..++..|+|.+|+..+..+..-.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~---------------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP---------------ELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44566777777888899998888776555544433 356788899999999999999999999999
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
|..+-+---++.|++.++|.+== .+-..+++-.+ ++.+......+..+
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~Wr-~~A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPSWR-RYADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred CCChHHHHHHHHHHHHcCChHHH-HHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 98888888889999999986421 12233444443 56666666655443
No 304
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.78 E-value=1.1 Score=31.67 Aligned_cols=75 Identities=24% Similarity=0.228 Sum_probs=53.2
Q ss_pred HHHHHhHHHHHcC---CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 62 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 62 ~~~~~g~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
..++.+..+.++. +.++.+..+...+.- .++. -.-...+.+|.-+.++++|+.++.+++..++.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~-----------~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPE-----------RRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcc-----------cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3456666666554 445677777776651 1111 12346788889999999999999999999999
Q ss_pred CCCchHHHHHH
Q 028390 139 EPLNVKALYRR 149 (209)
Q Consensus 139 ~p~~~~~~~~~ 149 (209)
+|+|..+.-..
T Consensus 101 e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 101 EPNNRQALELK 111 (149)
T ss_pred CCCcHHHHHHH
Confidence 99998875443
No 305
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.72 E-value=0.31 Score=38.33 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc
Q 028390 79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK 155 (209)
Q Consensus 79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 155 (209)
|..+|.+|+.+.|..+. .|+.+|.++...|+.=.|+-+|-+++-...+.+.+.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~---------------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN---------------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH---------------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC---------------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999998775 699999999999999999999999998776678888888888777
No 306
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.68 E-value=0.91 Score=35.45 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=33.1
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
.+.|..++..|+|++|+..|..+........- ..+...+...+..|+..+|+.+..+..+-+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35555566666666666666665443332221 2344445555556666666665555555443
No 307
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.61 E-value=2.8 Score=35.05 Aligned_cols=103 Identities=20% Similarity=0.186 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ 151 (209)
Q Consensus 72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 151 (209)
..|+|+.|+..........--. +...+.....++...+..... -+...|..+...++++.|+...+-.--+.
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie-------~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAr 271 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIE-------KDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAAR 271 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 4456666655554443321111 112234455566666665543 45889999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 152 AHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 152 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
+++..|+..++-..++.+-+.+|. +.+...+
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY 302 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPH-PDIALLY 302 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence 999999999999999999999885 4444443
No 308
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=3 Score=38.25 Aligned_cols=126 Identities=18% Similarity=0.230 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-------hcCHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYSET 128 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A 128 (209)
++.........|..+...|++.+|++.|..+|-..|-.-....++....+++.......+...-.. ....+.+
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 355666777899999999999999999999998766544444445555555555543333222222 2234444
Q ss_pred --HHHHHHHhhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390 129 --SSLCTKVLELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNRVVKL 181 (209)
Q Consensus 129 --~~~~~~al~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 181 (209)
+..|-.-..+.|.+.-.-.+.| .++++++++..|.....+.+++.|..+.+..
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3344444566777655555555 6899999999999999999999997665543
No 309
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.45 E-value=1.2 Score=28.03 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
..+..+...|..+-+.|+|.+|+.+|..|++++..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999998765
No 310
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=93.37 E-value=1.3 Score=28.13 Aligned_cols=66 Identities=15% Similarity=0.038 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHHHhHHHHHHHhh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF------TDDEKHQANGLRLSCYLNNAACKLKL 122 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~ 122 (209)
.+.|-.+.+.|..+-..|+.+.|+.+|.+++..+...... ..++|+....+....-.+++.+-..+
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778899999999999999999999999988653322 33667777777777767666665443
No 311
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=93.18 E-value=0.4 Score=29.38 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=30.1
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
..+..+...|..+-..|++++|+.+|.+|+..+..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34667778999999999999999999999988654
No 312
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.17 E-value=0.56 Score=38.99 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=83.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 139 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 139 (209)
.+.+.|..+...|+++.|+..|.++-.+..+... .+..+.|.-.+-..+|+|.....+..++..--
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------------VINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 3667888899999999999999998777665433 35578888888889999999988888887652
Q ss_pred ------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHH
Q 028390 140 ------PLNVKALYRRSQAHLKTSELEKAEADIKRALT--------IDPNNRVVKLVYME 185 (209)
Q Consensus 140 ------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------l~p~~~~~~~~l~~ 185 (209)
.-.++..+.-|.+...++++..|.+++-.+.- +.|.|..+.-.+.-
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA 279 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA 279 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence 11255677888899999999999988866532 13555555444443
No 313
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=5.3 Score=34.34 Aligned_cols=100 Identities=21% Similarity=0.194 Sum_probs=80.0
Q ss_pred HHHHHHHHhHHHH-HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHh
Q 028390 59 ACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVL 136 (209)
Q Consensus 59 ~a~~~~~~g~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al 136 (209)
.+......|..++ ....++.|..+..+|..+...-+.|. +....++.-++.+|.... .+..|...+.+++
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 3555566666554 57899999999999999988777763 456678888999999887 8889999999999
Q ss_pred hhCCCc----hHHHHHHHHHHhccCCHHHHHHHH
Q 028390 137 ELEPLN----VKALYRRSQAHLKTSELEKAEADI 166 (209)
Q Consensus 137 ~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~ 166 (209)
++.... .+.++.++....-..|+..|...+
T Consensus 117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 886554 567788999999999999888765
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.04 E-value=0.16 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=14.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHH
Q 028390 145 ALYRRSQAHLKTSELEKAEADIK 167 (209)
Q Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~ 167 (209)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665543
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.87 E-value=6.6 Score=34.97 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=87.1
Q ss_pred HHHHHHHHHhHHHH-HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 58 EACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 58 ~~a~~~~~~g~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
..+......|..++ ...+++.|..+..+++.+... ..+ .++...+..-++.++.+.+... |...+++.+
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 34667778888888 678999999999999998766 333 3455556667788888887777 999999998
Q ss_pred hhCCC----chHHHHHHHHH--HhccCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 028390 137 ELEPL----NVKALYRRSQA--HLKTSELEKAEADIKRALTID--PNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 137 ~~~p~----~~~~~~~~a~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~l~~~~ 190 (209)
+.-.. .+...|++-.+ +...+|+..|+..++.+..+. +.++.+...+..+...+
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 76444 34444554422 222379999999999998875 46666655554444433
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.76 E-value=0.74 Score=41.87 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=76.5
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHH-------HHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAA-------KIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 130 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 130 (209)
..-..+.+.+..+-..++...|+++|.++- +++.+++..-+.-..... -..+|.--|+..-..|+.+.|+.
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHH
Confidence 334456677777777888888888888762 222222210000000000 12467777888888999999999
Q ss_pred HHHHHhhh---------------------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 131 LCTKVLEL---------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 131 ~~~~al~~---------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+|..|-+. ...+-.+-|.+|.-|...|++.+|+.+|.+|..+
T Consensus 934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99887532 2456778899999999999999999999887654
No 317
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=1.1 Score=35.22 Aligned_cols=72 Identities=15% Similarity=-0.017 Sum_probs=60.8
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 144 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 144 (209)
..=..+...++++.|...-...+.++|.++. -+.-+|.+|.++|.+..|+.+++..++..|+.+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPY---------------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3344566789999999999999999888775 2789999999999999999999999999999887
Q ss_pred HHHHHHH
Q 028390 145 ALYRRSQ 151 (209)
Q Consensus 145 ~~~~~a~ 151 (209)
+-+-++.
T Consensus 251 a~~ir~~ 257 (269)
T COG2912 251 AEMIRAQ 257 (269)
T ss_pred HHHHHHH
Confidence 7665543
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.99 E-value=3.4 Score=29.62 Aligned_cols=83 Identities=7% Similarity=-0.050 Sum_probs=62.0
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+.+........++.+++.......--+-|..+. +-..-|..++..|+|.+|+..+..+.+-.+..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------------LDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 334444445578888887776654444444443 45777889999999999999999999888887
Q ss_pred hHHHHHHHHHHhccCCHH
Q 028390 143 VKALYRRSQAHLKTSELE 160 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~ 160 (209)
+-+.-.++.|++.+||.+
T Consensus 78 p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 78 PYGKALLALCLNAKGDAE 95 (153)
T ss_pred hHHHHHHHHHHHhcCChH
Confidence 877778889999999854
No 319
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.86 E-value=3 Score=34.57 Aligned_cols=106 Identities=12% Similarity=-0.068 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh-cCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 134 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 134 (209)
-......+......+-++|.+..|++...-.+.++|. |+-. +..-+-...++.++|+--+..++.
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g--------------~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG--------------VLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch--------------hHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4555667788888899999999999999999999998 5543 456666666778888877777776
Q ss_pred HhhhCC-C----chHHHHHHHHHHhccCCH---------------HHHHHHHHHHHhcCCC
Q 028390 135 VLELEP-L----NVKALYRRSQAHLKTSEL---------------EKAEADIKRALTIDPN 175 (209)
Q Consensus 135 al~~~p-~----~~~~~~~~a~~~~~~~~~---------------~~A~~~~~~a~~l~p~ 175 (209)
...... . -+..-|.++.|++.+++- +.|...+.+|+...|.
T Consensus 165 ~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 165 PLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 655221 1 235678899999999998 8999999999988875
No 320
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=1.6 Score=34.93 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=49.9
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 168 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (209)
-...+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 345556677899999999999999999999999999999999999999988776643
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.71 E-value=6.6 Score=34.55 Aligned_cols=101 Identities=21% Similarity=0.133 Sum_probs=74.2
Q ss_pred HHhHHHHHc----C-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc---CHHHHHHHHHHHh
Q 028390 65 HDGNLLFRA----G-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVL 136 (209)
Q Consensus 65 ~~g~~~~~~----~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al 136 (209)
..|..+.+. . ++..|+.+|.+|...... .+...+|.++..-. ++..|..+|..|.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----------------DAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 466666663 2 788899999999886322 25788888887554 6789999999886
Q ss_pred hhCCCchHHHHHHHHHHhcc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 137 ELEPLNVKALYRRSQAHLKT----SELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 137 ~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
... ++.+.+++|.||..- -+...|..+++++-+.. ++.+...+..+
T Consensus 356 ~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 356 KAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred HcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 654 688899999998765 37889999999999887 33433333333
No 322
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=4.3 Score=32.11 Aligned_cols=109 Identities=15% Similarity=0.036 Sum_probs=86.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-cCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390 71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLELEPLNVKALYRR 149 (209)
Q Consensus 71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~ 149 (209)
.+...-+.|+..-..+|.+.|..-. +|..+=.|...+ .+..+-+.+++.+++-+|.|-..|..+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYT---------------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR 118 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYT---------------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR 118 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccch---------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence 3456678899999999999776544 344444555443 467778999999999999999999999
Q ss_pred HHHHhccCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 150 SQAHLKTSELE-KAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 150 a~~~~~~~~~~-~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
-.+...+|+.. .-+...+.++..+..|-.++....-+-+..+...
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 99999999888 7788899999999999999998888776666544
No 323
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.63 E-value=3.2 Score=34.99 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=63.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHhhhCC--------Cc--------hHH--HHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 114 NNAACKLKLEDYSETSSLCTKVLELEP--------LN--------VKA--LYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 114 ~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~--------~~~--~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
.-|..+++++.|..|.--+..+|+++. .. +.. --.+..||.++++.+-|+....+.+-++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 334445567777776666666666531 11 111 234788999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 028390 176 NRVVKLVYMELKDKQREYAKYQAE 199 (209)
Q Consensus 176 ~~~~~~~l~~l~~~~~~~~~~~~~ 199 (209)
..--+-..+.|-++++.+.+..+.
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888888888776654
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.52 E-value=2.3 Score=38.91 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=36.5
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 169 (209)
.|...|.|.+|++..+.--++. -...||+.|.-+...+|.+.|+.+|+++
T Consensus 835 lyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 4556667777666554432222 2456899999999999999999999986
No 325
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.42 E-value=4 Score=31.84 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--CCc----hHHHHHHH
Q 028390 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--PLN----VKALYRRS 150 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~~a 150 (209)
...+..+.+|+..+..... ......+...+|.-|+..|+|+.|+..++.+...- ..+ ...+-.+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~ 225 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL 225 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4556677777776665433 13445567889999999999999999999996542 222 45567788
Q ss_pred HHHhccCCHHHHHHHHHHH
Q 028390 151 QAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 151 ~~~~~~~~~~~A~~~~~~a 169 (209)
.|+..+|+.+..+...-+.
T Consensus 226 ~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 226 ECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 8999999998887665443
No 326
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=91.42 E-value=3.5 Score=31.84 Aligned_cols=119 Identities=15% Similarity=0.009 Sum_probs=68.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCH-HHHH-HHHHHHhh-h-CCCch--H
Q 028390 71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY-SETS-SLCTKVLE-L-EPLNV--K 144 (209)
Q Consensus 71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~-~~~~~al~-~-~p~~~--~ 144 (209)
|..|+|+.|+....-||...-..|.. -+..+....+.-...-+......|.. +-.. ..+..+.. . -|+-+ +
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~---f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQ---FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCcc---ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 45799999999999999875443321 11122233333344444444555542 2221 11111111 1 13333 3
Q ss_pred HHHHHHHHH---------hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390 145 ALYRRSQAH---------LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 145 ~~~~~a~~~---------~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
.|--.|.++ ...++...|+..+++|+.++|. ..+.+.+.+|..+++..
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 334455656 2456888999999999999975 66777788888877643
No 327
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.18 E-value=11 Score=33.74 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=80.7
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
..+-..++..-.-|-++.....|.+.|.+--..| .+..|.|..+-...-|++|.+.|++.+.+-+
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTP---------------qii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATP---------------QIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 3344445555556788888888988887633322 3568888888888889999999999998753
Q ss_pred -Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHH
Q 028390 141 -LN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYMELKDKQ 190 (209)
Q Consensus 141 -~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~l~~~~ 190 (209)
++ +..|+......+..-..+.|...|++|++..|.. ..+--.++.+.++.
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 32 4456677777777889999999999999998832 23333444444444
No 328
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.13 E-value=2.6 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~ 93 (209)
.+..+...|..+-+.|+|++|+.+|.+||..+...
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999987653
No 329
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.98 E-value=2.2 Score=36.18 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
...+.+.|.-+|..|+|.++..+-....++.|+ ..+|.-+|.|.+..++|.+|-.++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 566778999999999999999988888887663 357999999999999999998877554
No 330
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=2 Score=33.82 Aligned_cols=87 Identities=17% Similarity=0.104 Sum_probs=70.0
Q ss_pred HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390 120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
.+...-..|+.....+|.++|.+-.+|..+-.++..++ +..+-+.++..+++-+|.|-.++...+.+-+.+....-.|-
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34555678888899999999999998877777766665 78888899999999999999999999998888876554566
Q ss_pred HHHHhhhh
Q 028390 199 EIFGTMLS 206 (209)
Q Consensus 199 ~~~~~~~~ 206 (209)
...++|+.
T Consensus 134 ef~~~~l~ 141 (318)
T KOG0530|consen 134 EFTKLMLD 141 (318)
T ss_pred HHHHHHHh
Confidence 66666654
No 331
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=2.2 Score=39.87 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=80.4
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC---
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--- 139 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--- 139 (209)
...-|+.+|..|.|+.|.-.|...-. |..+|.....+|+|..|.....+|-...
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 45679999999999999888875333 7888899999999999999888874331
Q ss_pred ------------------CC----chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 140 ------------------PL----NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 140 ------------------p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
.- +.+-+=.+..-|...|-|++-+..++.++-+.-.+-..-..|+.++.+-+
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 11 12223334556778889999999999999988888888888888876543
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.62 E-value=4.7 Score=28.91 Aligned_cols=84 Identities=8% Similarity=0.004 Sum_probs=68.9
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
.+.....+-+...+.+++...+.-.--+-|.....-.--|..+...|+|.+|+..|+.+.+-.+..+-....+..|..-+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34555555566889999888888877889999999999999999999999999999999888887787878888877665
Q ss_pred HHHH
Q 028390 191 REYA 194 (209)
Q Consensus 191 ~~~~ 194 (209)
....
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 5443
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=7.2 Score=34.19 Aligned_cols=78 Identities=18% Similarity=-0.034 Sum_probs=56.7
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHH-HHHhhhCCCchHHHHHH------HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLC-TKVLELEPLNVKALYRR------SQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 182 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~~------a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 182 (209)
.++.|++......|....++... ..+....|++......+ +..+..+++..++...+.++..+.|.++.+...
T Consensus 102 ~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 102 PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 46778877777666665555444 44777888876665555 777888888888888888888888888777776
Q ss_pred HHHHH
Q 028390 183 YMELK 187 (209)
Q Consensus 183 l~~l~ 187 (209)
+....
T Consensus 182 ~~~~r 186 (620)
T COG3914 182 LMTAR 186 (620)
T ss_pred HHHHH
Confidence 66653
No 334
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.42 E-value=1.1 Score=23.77 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=24.7
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHH--HHhhhCCCc
Q 028390 111 CYLNNAACKLKLEDYSETSSLCT--KVLELEPLN 142 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~--~al~~~p~~ 142 (209)
.+..+|.++...|++++|+..++ .+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 36778899999999999999954 787777754
No 335
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.17 E-value=0.89 Score=28.51 Aligned_cols=35 Identities=14% Similarity=-0.063 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
..+..+...|...-..|+|++|+..|..||+++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34666778888889999999999999999998766
No 336
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.14 E-value=0.6 Score=39.08 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=47.4
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHh--------hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVL--------ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
...+..++..+|+|..|++.++.+- ...+-++..+|..|.||..+++|.+|+..|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788999999998876542 11244578899999999999999999999988763
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.93 E-value=1.2 Score=33.63 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390 69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 130 (209)
Q Consensus 69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 130 (209)
.+|.+.+.++|+..|.+++.+.+.+..+ ...++..++.++.++|+++.|.-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~-----------n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNF-----------NPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHHHhcchhhhhh
Confidence 3456899999999999999998776444 36679999999999999999853
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.73 E-value=0.55 Score=22.66 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCT 133 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~ 133 (209)
+..++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 57899999999999999998765
No 339
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=89.54 E-value=0.99 Score=28.31 Aligned_cols=37 Identities=14% Similarity=-0.094 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~ 93 (209)
+..+..+..+|...-..|+|++|+..|..||+.+-..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3456677788999999999999999999999987653
No 340
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.48 E-value=3.6 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
+..+..+...|...-..|+|++|+.+|..|+..+-.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999998755
No 341
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=89.30 E-value=3.8 Score=25.66 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=31.0
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH 94 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~ 94 (209)
..+..+...|...-..|+|++|...|..+|+.+....
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 4466677888889999999999999999999887643
No 342
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.23 E-value=11 Score=30.76 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=70.2
Q ss_pred HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc--------hHHHHHHHHHHhccCCHHHHHHHHHHHH--hcC
Q 028390 104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN--------VKALYRRSQAHLKTSELEKAEADIKRAL--TID 173 (209)
Q Consensus 104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~l~ 173 (209)
..+....+...+|.+|-+.++|..|-+.+. ++..+... ...+.++|.+|...++-.+|..+..++- ..+
T Consensus 98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 98 FEEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 345566788999999999999999877663 33443311 2357889999999999999999999873 346
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 028390 174 PNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 174 p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
..|+...-.+.-|+.|.-+.+.+
T Consensus 177 ~~Ne~Lqie~kvc~ARvlD~krk 199 (399)
T KOG1497|consen 177 SSNEQLQIEYKVCYARVLDYKRK 199 (399)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888666543
No 343
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.03 E-value=3.3 Score=29.41 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
+....++......|++.-|......++..+|+|..++..+..+.+.+..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666666666666666666655555544
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.96 E-value=0.84 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.3
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 113 LNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+++|..|..+|+++.|...++.++.-.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 678999999999999999999999543
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.95 E-value=4.4 Score=34.88 Aligned_cols=106 Identities=11% Similarity=-0.024 Sum_probs=69.9
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
+...-..-......|+...|-.....+++-.|.+|. ...-++.+...+|.|++|...+.-+-..-
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~---------------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~ 353 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPV---------------LIQLRSVIFSHLGYYEQAYQDISDVEKII 353 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCch---------------hhHHHHHHHHHhhhHHHHHHHhhchhhhh
Confidence 333334445566778888888888888887777665 35566778888999999888776665544
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
....++.--+-..+..+++++.|...-.-.+.-.-+++++.
T Consensus 354 ~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 354 GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 44444555555567777777777766655554444444443
No 346
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=88.93 E-value=1.6 Score=27.23 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
...+..+...|...-..|++++|+.+|..|++.+..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445667788899999999999999999999998765
No 347
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.68 E-value=2.4 Score=35.60 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=67.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHH
Q 028390 69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR 148 (209)
Q Consensus 69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 148 (209)
.+.-.|+|..|++.... |.+... ........-.+.+++..|-+|+-+++|.+|+..+..++-.-......+..
T Consensus 131 vh~LLGDY~~Alk~l~~-idl~~~------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 131 VHCLLGDYYQALKVLEN-IDLNKK------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHhccCHHHHHHHhhc-cCcccc------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33446777777766542 111110 00011123356789999999999999999999999987542211111222
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 028390 149 RSQAHLK-TSELEKAEADIKRALTIDPN--NRVVKLVYMEL-KDKQREYAKYQAEIFGTMLS 206 (209)
Q Consensus 149 ~a~~~~~-~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~ 206 (209)
+.--+-. .+..++....+--++.+.|. +..+...+..- .++..+-....-..|..+|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~ 265 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFS 265 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2222222 12344455555556677775 44444333332 23333333334455555554
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.57 E-value=12 Score=30.45 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
.+..+..+++||+.+|++...+..+-.+..+..+-+....-+++++..+|++...+..+-.-.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 467788999999999999999999888999999999999999999999999998887665543
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.52 E-value=4.5 Score=25.63 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=44.8
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH---HHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVK---ALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
....|.-++...+.++|+....++++..++... ++-.+..+|...|++.+++.+...-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556778889999999999988776654 4444668999999999988776554443
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.31 E-value=2.4 Score=36.72 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=64.5
Q ss_pred hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~ 196 (209)
....+..|+.+|.++++.-|+....+.+++.++.+.+ +.-.|+.+...++.++|....++-.|.++...+....+.
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3455778999999999999999999999999998865 556788888999999999999998888888877776654
No 351
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.02 E-value=4.8 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=19.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHH
Q 028390 146 LYRRSQAHLKTSELEKAEADIKRAL-------TIDPNNRVVKLVYMEL 186 (209)
Q Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~a~-------~l~p~~~~~~~~l~~l 186 (209)
+..+|.-+-+.|++.+|+.+|++++ ...|+++.-......+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3444444455555555554444443 4467665543333333
No 352
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=7.9 Score=33.96 Aligned_cols=99 Identities=18% Similarity=0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028390 77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT 156 (209)
Q Consensus 77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 156 (209)
..++..+...+.+.+..+. +.. ... ++..+...+....+......++..+|.+..++.++|.+....
T Consensus 48 ~~~~~a~~~~~~~~~~~~~-----------lll-a~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~ 114 (620)
T COG3914 48 ALAIYALLLGIAINDVNPE-----------LLL-AAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELD 114 (620)
T ss_pred hHHHHHHHccCccCCCCHH-----------HHH-HHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHh
Confidence 3366666666664443332 112 222 778888899999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHH
Q 028390 157 SELEKAEADIKR-ALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 157 ~~~~~A~~~~~~-a~~l~p~~~~~~~~l~~l~~ 188 (209)
|....+...+.. +....|.+......+-.+.+
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 115 GLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH
Confidence 887777766666 88899999988888844444
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.78 E-value=2.8 Score=31.66 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=47.3
Q ss_pred HHHhhcCHHHHHHHHHHHhhhC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN----NRVVKLVYMELKDKQRE 192 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~----~~~~~~~l~~l~~~~~~ 192 (209)
.+...-.=+.|...+..+=.-. -+.+...+.+|.-|. ..|.++|+..|.+++++.+. |+++...|+.+...++.
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3334433445655554432211 134666666665444 67888888888888888543 47888888888777766
Q ss_pred HHH
Q 028390 193 YAK 195 (209)
Q Consensus 193 ~~~ 195 (209)
++.
T Consensus 194 ~e~ 196 (203)
T PF11207_consen 194 YEQ 196 (203)
T ss_pred hhh
Confidence 543
No 354
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.62 E-value=7.6 Score=32.34 Aligned_cols=70 Identities=14% Similarity=0.016 Sum_probs=52.5
Q ss_pred HhHHHHHHHh---hcCHHHHHHHHHHH-hhhCCCchHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCHH
Q 028390 112 YLNNAACKLK---LEDYSETSSLCTKV-LELEPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 112 ~~~~a~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
....|.++.+ .|+.++|+..+..+ ....+.+++.+.-.|.+|-.+ ...++|+..|.++.+++|+.-.
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 3445555555 89999999999994 455677789999988877543 2478899999999999987543
Q ss_pred HHH
Q 028390 179 VKL 181 (209)
Q Consensus 179 ~~~ 181 (209)
..+
T Consensus 262 GIN 264 (374)
T PF13281_consen 262 GIN 264 (374)
T ss_pred hHH
Confidence 333
No 355
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.35 E-value=2 Score=30.54 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE 160 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~ 160 (209)
.....++.-.+..|+|.-|.+.++.++..+|++..+...++.++.++|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 346778888889999999999999999999999999999999998887543
No 356
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=16 Score=30.75 Aligned_cols=107 Identities=16% Similarity=0.030 Sum_probs=79.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc--CHHHHHHHHHHHhhhCCCchHHH
Q 028390 69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~ 146 (209)
...+..-.+.-+.+-..++...|+.-. +|+-+..+..+.+ +|..-+..|.+++++||.|..+|
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~---------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYG---------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHH---------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 334444667778888888888776543 6889999988765 36888999999999999998877
Q ss_pred HHHHHHHhcc-C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390 147 YRRSQAHLKT-S---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 190 (209)
Q Consensus 147 ~~~a~~~~~~-~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~ 190 (209)
..+-.+.... . ...+=+.+..+++.-++.|-.++.....+-..+
T Consensus 149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 5544333332 2 366777888888888999999988887776644
No 357
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=86.69 E-value=5.6 Score=24.63 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~ 93 (209)
..+..+...|...-..|++++|+.+|..|+..+...
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999987653
No 358
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.64 E-value=11 Score=28.01 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=67.2
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh-hhCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL-ELEP 140 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p 140 (209)
.....|.....+|+-..|+..|..+-.-.+. |. ..+-.+...-+..+.-.|.|+....-.+..- .-+|
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~----------~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~ 164 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQ----------IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cc----------hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCCh
Confidence 3456777778888888888888876553221 11 1122345555666677888887655554332 2345
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 141 LNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
--..+.--+|.+-++-|++.+|...|..+..
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5566677789999999999999999998876
No 359
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.60 E-value=8.2 Score=27.32 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.+..+...+..++..++.+|.+|.++|+..+|...+++|-+
T Consensus 108 i~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 108 IYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33333334566789999999999999999999999988865
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.51 E-value=22 Score=31.36 Aligned_cols=103 Identities=15% Similarity=-0.027 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-----CHHHHHHHHHHHhhhCCCchHHHH
Q 028390 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-----DYSETSSLCTKVLELEPLNVKALY 147 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~ 147 (209)
.++.+.|+.+|..+..-+..... .....+.+.+|.+|..-. ++..|+..+.++-.++. +.+.+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~----------~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~ 329 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAAT----------KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQY 329 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh----------hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHH
Confidence 46889999999999872100000 001125788999998743 67889999999877754 66789
Q ss_pred HHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390 148 RRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDK 189 (209)
Q Consensus 148 ~~a~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~ 189 (209)
.+|.++..-. +...|..+|..|... .+..+...++.|...
T Consensus 330 ~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 330 LLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred HHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 9999998887 678999999888753 456666666666543
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.44 E-value=2.7 Score=20.58 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 158 ELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 158 ~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
+++.|...|++++...|.++.++..+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34444555555555555444444443
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.26 E-value=12 Score=28.89 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=58.1
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
-.++-+...+|+.....-++-+|.+......+-+.|.-.|+|++|..-++-+-.+.|++......+..+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 455678889999999999999999988888888999999999999999999999999876554444443
No 363
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.20 E-value=28 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.129 Sum_probs=20.4
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
..+...|..+-..|+.+.|...|.+|+..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 34556677777777777777777777654
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.83 E-value=5 Score=29.85 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
.+..++...+.+...| ++..+.+++.++...|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666677777777 5888999999999999999999999999999994
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.78 E-value=3.1 Score=20.33 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.4
Q ss_pred cCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390 123 EDYSETSSLCTKVLELEPLNVKALYRRSQ 151 (209)
Q Consensus 123 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 151 (209)
|+++.|...|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788999999999999988888877654
No 366
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.40 E-value=7.7 Score=35.01 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHH
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADI 166 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (209)
|.+.+.+=.+|..+...|-.++|...|
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 555555555666666666555555544
No 367
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.34 E-value=23 Score=34.10 Aligned_cols=130 Identities=16% Similarity=0.119 Sum_probs=91.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.+.+++..+..+...+++++|+..-.+|+-+........ ..-....|.+++...+..++...|+..+.++..+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC-------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 355677788888999999999998888876544322111 0112446899999999999999999999888765
Q ss_pred -----C---CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHH
Q 028390 139 -----E---PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--------NNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 139 -----~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~l~~~~~~~~~ 195 (209)
. |.-.-...+++..+..+++++.|+.+++.|...+- .+......++++....+.++.
T Consensus 1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~ 1117 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRN 1117 (1236)
T ss_pred hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHH
Confidence 2 33344567888888899999999999999988642 123444455555555555443
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.31 E-value=5.9 Score=31.82 Aligned_cols=50 Identities=24% Similarity=0.183 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
.+.+...+..|...|.+.+|....++++.++|-+....+.+..+...+..
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 34556678899999999999999999999999999999998888877765
No 369
>PF12854 PPR_1: PPR repeat
Probab=83.24 E-value=3.7 Score=21.15 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHhccCCHHHHHHHHHH
Q 028390 141 LNVKALYRRSQAHLKTSELEKAEADIKR 168 (209)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (209)
.+.-.|-.+-.+|.+.|+.++|...|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3455667777778888888888777654
No 370
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.08 E-value=27 Score=29.46 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=65.1
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHH--HHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA--CKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
.+....-.|+|+.|.+.|+..+. +|. ..+.--+|. -...+|..+.|+++..++-..-|.-.
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~-dPE----------------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~ 188 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLD-DPE----------------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP 188 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-ChH----------------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc
Confidence 45555567888888888876664 121 112222332 23468999999999999999999988
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 144 KALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.+..-.-.....-|||+.|++......+
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8888888888999999999998876554
No 371
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.71 E-value=9.6 Score=32.35 Aligned_cols=119 Identities=10% Similarity=0.012 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH--
Q 028390 49 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS-- 126 (209)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 126 (209)
++.+.....--+.-+.+.|..+.....|.+|+...-.|=+.+....+. .-..-+-.+.+-..+.+||+.+++..
T Consensus 152 lppsE~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k----lLe~VDNyallnLDIVWCYfrLknitcL 227 (568)
T KOG2561|consen 152 LPPSEQKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK----LLELVDNYALLNLDIVWCYFRLKNITCL 227 (568)
T ss_pred cChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH----HHHhhcchhhhhcchhheehhhcccccC
Confidence 333333345556778899999999999999999888877766554320 00011112334566788999887643
Q ss_pred -HHHHHH---HHHhhh-------------CCCc-hHH-----HHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 127 -ETSSLC---TKVLEL-------------EPLN-VKA-----LYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 127 -~A~~~~---~~al~~-------------~p~~-~~~-----~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.|..-+ .+.+.. .+.. ..+ +..-|.+.+++|+-++|..+++.+..
T Consensus 228 ~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 228 PDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred ChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 333322 222221 1222 223 33358999999999999999988754
No 372
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=82.59 E-value=27 Score=29.15 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=66.4
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCCchHHHHHHHHHHhc---cCCHHHHHHHHHHH-HhcCCCCHHHH
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLK---TSELEKAEADIKRA-LTIDPNNRVVK 180 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-~~l~p~~~~~~ 180 (209)
..+..++=.+|....+|+.=+...+..-.+ -+..+..-+..|.|+.+ .|+.++|+..+..+ ..-.+.+++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 345677778899999999888888777666 34556777889999999 99999999999995 45567789999
Q ss_pred HHHHHHHHHH
Q 028390 181 LVYMELKDKQ 190 (209)
Q Consensus 181 ~~l~~l~~~~ 190 (209)
-.+.++++.+
T Consensus 221 gL~GRIyKD~ 230 (374)
T PF13281_consen 221 GLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHH
Confidence 9999998776
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.21 E-value=28 Score=29.08 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=63.5
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHH--hhcCHHHHHHHHHHHh
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL--KLEDYSETSSLCTKVL 136 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al 136 (209)
.+......+..+|+.++|..|...+...+...+.... ...+..++.+|. ..-++++|.+.++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456778899999999999999999998875332111 233444444443 4566777777777555
Q ss_pred hhCC------------------------------C-----c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 137 ELEP------------------------------L-----N---VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 137 ~~~p------------------------------~-----~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
...- . . ..-++.-|.=-...|+|+.|..-+-+++++
T Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3210 0 0 011222233334678899999998888876
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.79 E-value=16 Score=29.64 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHhccCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 130 SLCTKVLELEPLNVKALYRRSQAHLKTSE------------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
..+++.+.-+|.++.+|..+......+-. .+.-+..|++|++.+|++......+-.+-..+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 45788889999999999998876665543 456778899999999999988888777766654
No 375
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=12 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=28.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
+..++..|+-+|++|++++|...|.++|.....
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 455788999999999999999999999876543
No 376
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=33 Score=28.94 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390 123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 193 (209)
Q Consensus 123 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~ 193 (209)
..+++-+.....++..+|+.-.+|+-+..++.+.+ +|..-++..+++++.+|.|-.++.....+....+..
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 35677788889999999999999999999998776 578889999999999999999999988888877766
No 377
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.47 E-value=26 Score=30.58 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=61.7
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhh---C--CC--chHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLEL---E--PL--NVKALYRRSQAHLKTSE-LEKAEADIKRALTIDPNNRVVKLV 182 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~--p~--~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~ 182 (209)
-+.-+|.|...+|+-..|...+..++.- . .. .+-++|-+|..|..++. +.++..++.+|.....+..--.+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRL 530 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRL 530 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHH
Confidence 4677889999999999999988887732 1 11 27899999999999999 999999999999887666544444
Q ss_pred HHHHHHHH
Q 028390 183 YMELKDKQ 190 (209)
Q Consensus 183 l~~l~~~~ 190 (209)
--+|+..+
T Consensus 531 h~rIqAAl 538 (546)
T KOG3783|consen 531 HMRIQAAL 538 (546)
T ss_pred HHHHHHHH
Confidence 44454443
No 378
>PF15469 Sec5: Exocyst complex component Sec5
Probab=80.26 E-value=15 Score=27.09 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhhc
Q 028390 70 LFRAGKYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 70 ~~~~~~~~~A~~~y~~al~~~~~~ 93 (209)
++..|+|+.++..|.+|-.++...
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999987664
No 379
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.35 E-value=20 Score=33.08 Aligned_cols=86 Identities=8% Similarity=0.006 Sum_probs=68.4
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----C
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL----E 139 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~ 139 (209)
--.|......|+++.|+..-..++...|..... ..+.++...|.+..-.|++++|..+...+.++ +
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 345777788999999999999999998876653 36778999999999999999999988888776 3
Q ss_pred CCc--hHHHHHHHHHHhccCCH
Q 028390 140 PLN--VKALYRRSQAHLKTSEL 159 (209)
Q Consensus 140 p~~--~~~~~~~a~~~~~~~~~ 159 (209)
..+ .-+.+..+.++..+|+.
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHH
Confidence 322 33456678888899943
No 380
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.02 E-value=6.4 Score=33.91 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=45.3
Q ss_pred HHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 116 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
-...+++++|++|.+...-.+.-.-..+...---|..-..+|-+++|..++++++.++|.
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 345568899999998888877665555555544555666788899999999999998875
No 381
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.66 E-value=22 Score=34.17 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=83.5
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
..+....+.|......|.+.+|.+ ..+++.++..... ...+.....|..++..+..++++++|+....++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~-------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMG-------VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhh-------hcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 346667789999999999999988 7777777653221 12234567899999999999999999999988764
Q ss_pred h-------C-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 138 L-------E-PLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 138 ~-------~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+ + |+....+.+++...+..+....|...+.++..+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 4 2 444678889998888999999999999888776
No 382
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.05 E-value=44 Score=29.21 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=66.4
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 142 (209)
....+......|+.+.|+..++.++. ..+++.....+..+|+++..+.+|..|..++....+... |
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd-W 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD-W 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-h
Confidence 34556666666778888888887776 234567778899999999999999999999988877644 5
Q ss_pred hHHHHHHHH----------HHhccCCHHHHHHHHHHHHhc
Q 028390 143 VKALYRRSQ----------AHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 143 ~~~~~~~a~----------~~~~~~~~~~A~~~~~~a~~l 172 (209)
..++|.--. +....|+.+.|-.+++.+.++
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l 375 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEEL 375 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHH
Confidence 565554322 334455666666666555443
No 383
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.10 E-value=24 Score=30.64 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=46.4
Q ss_pred HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC-HHHHHHHHHHHhhhCCCchHHH
Q 028390 72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-YSETSSLCTKVLELEPLNVKAL 146 (209)
Q Consensus 72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~ 146 (209)
+.+.+.+-...|.+++..-|..++ +|..-|.-.+..+. .+.|...+.++|+++|++++.|
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~d---------------LWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPD---------------LWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCch---------------hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 344578888899999998777665 45655666665554 8999999999999999997754
No 384
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.56 E-value=17 Score=28.98 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
..+++..++.++...++++.+...+++.+.++|-+..++..+...+......... ...|+++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~a-i~~y~~l 213 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAA-IRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHH-HHHHHHH
Confidence 4678888999999999999999999999999999999999988887766554433 3355554
No 385
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.37 E-value=75 Score=29.62 Aligned_cols=109 Identities=17% Similarity=0.052 Sum_probs=83.1
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
.......-.+-......++.+|-....++-...+...... ...+.+..---.|.+....|+++.|+..+..++.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344455667777888999999988888877766532221 1234444555677788889999999999999998
Q ss_pred hCCCc-----hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 138 LEPLN-----VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 138 ~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
.=|.+ .-++...|.+..-.|++++|..+...+.++
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 76655 456788999999999999999999999887
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.22 E-value=22 Score=27.55 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhHHHHHHH-hhcCHHHHHHHHHHHhh
Q 028390 76 YWRASKKYEKAAKIIEFH-HSFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCTKVLE 137 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~ 137 (209)
.+.|...|.+|+.+.... ++. .++..-+..|.+..|. .+|+.++|+..+..+++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~--------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT--------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT--------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC--------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 477999999999988772 222 2666777778777765 48999999998888754
No 387
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=74.01 E-value=24 Score=30.25 Aligned_cols=27 Identities=7% Similarity=0.000 Sum_probs=21.4
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
.|..+|...+..|+++-|...+.++-+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 688888888888888888888877643
No 388
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=73.87 E-value=24 Score=28.73 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
.++.+..+...+...-+.++|.+|..+|..|++++-.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 4556667777888888899999999999999987654
No 389
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.34 E-value=15 Score=33.56 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=18.1
Q ss_pred hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHH
Q 028390 122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 166 (209)
Q Consensus 122 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (209)
.++|.+|+..++.+...+.. ...|-..+..|...|+|+-|...|
T Consensus 745 akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHH
Confidence 34455555444443322211 112223444455555555444444
No 390
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=72.21 E-value=17 Score=21.77 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHH
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 131 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 131 (209)
...|..++..|+|-+|.+.+...-...+.. .-.-+...+...-|..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~---------~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP---------ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC---------HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc---------hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 467889999999999999999877532221 11223334455566667788888888654
No 391
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=72.00 E-value=22 Score=22.51 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390 159 LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 204 (209)
Q Consensus 159 ~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 204 (209)
.-.++...-+.++.+|+||.++..++.......-.+..+....|.|
T Consensus 23 ~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQSn~iKa~ 68 (80)
T PRK15326 23 LQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNTVKVF 68 (80)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445566778888777777776666666666665555443
No 392
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.99 E-value=56 Score=27.04 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=58.5
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhh--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLEL--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l 186 (209)
+-.|++...-...=.+.++...+....- =..+.-.+-.+|..+.++|..++|...|.+++.+.++..+......++
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3578888887777777777777666654 234566677899999999999999999999999998877665544443
No 393
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.52 E-value=48 Score=26.12 Aligned_cols=29 Identities=31% Similarity=0.167 Sum_probs=20.1
Q ss_pred HHHHHhHHHHH----cCCHHHHHHHHHHHHHHH
Q 028390 62 RKKHDGNLLFR----AGKYWRASKKYEKAAKII 90 (209)
Q Consensus 62 ~~~~~g~~~~~----~~~~~~A~~~y~~al~~~ 90 (209)
.....|..+.. ..++.+|..+|.+|...-
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 34455666555 448888999998888763
No 394
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=71.30 E-value=10 Score=34.23 Aligned_cols=69 Identities=7% Similarity=0.051 Sum_probs=47.1
Q ss_pred HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390 105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 184 (209)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 184 (209)
++....++.++|..+..+.+|+.|.++|...-. .-+...|++.+.+|++-... ...-|++.+....++
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVL----ARTLPEDSELLPVMA 859 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHH
Confidence 456677899999999999999999999976532 23566788888888764433 333355544444443
Q ss_pred H
Q 028390 185 E 185 (209)
Q Consensus 185 ~ 185 (209)
.
T Consensus 860 ~ 860 (1189)
T KOG2041|consen 860 D 860 (1189)
T ss_pred H
Confidence 3
No 395
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.15 E-value=7.5 Score=18.70 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=12.8
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
|+.+-.+|.+.|++++|.+.+.+-
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHH
Confidence 444445555555555555555544
No 396
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.87 E-value=77 Score=28.18 Aligned_cols=121 Identities=18% Similarity=0.176 Sum_probs=83.0
Q ss_pred HHhHHHHH---cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh----
Q 028390 65 HDGNLLFR---AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE---- 137 (209)
Q Consensus 65 ~~g~~~~~---~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---- 137 (209)
..|..+|+ ...|++|...|.-|+...+..... ..-+..++++..+..+|.+...+|+.+-|.....++|=
T Consensus 240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~---~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~ 316 (665)
T KOG2422|consen 240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVL---ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR 316 (665)
T ss_pred cCceeEEEeecchHHHHHHHHHHHHHhhcCCccee---eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 45555553 567888988888887765432100 00011144677789999999999999988888777761
Q ss_pred -----hC------------CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 028390 138 -----LE------------PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKLVYMELKD 188 (209)
Q Consensus 138 -----~~------------p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~l~~ 188 (209)
+. |.| ..++++--..+.+.|.+..|..+++-.++++|. ||-+...+-.+..
T Consensus 317 a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 317 ALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred HhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 11 222 234566667788899999999999999999998 8766665555543
No 397
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.60 E-value=36 Score=32.14 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=54.0
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH-------HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH---HH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA-------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV---KL 181 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~---~~ 181 (209)
|...|.+|..+|+|++-++.+..|++.-|+++.. .||+-.+.+... ..|....--++...|..... .+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISSREEEK 632 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccchHHHH
Confidence 8899999999999999999999999998888653 455555555433 34667777788888875433 33
Q ss_pred HHHHHHH
Q 028390 182 VYMELKD 188 (209)
Q Consensus 182 ~l~~l~~ 188 (209)
.+..++.
T Consensus 633 ~~~~~~~ 639 (932)
T PRK13184 633 FLEILYH 639 (932)
T ss_pred HHHHHHh
Confidence 4444433
No 398
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=70.27 E-value=31 Score=23.42 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=56.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhhhCCCch---HHHHHHHHHHhccCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 028390 115 NAACKLKLEDYSETSSLCTKVLELEPLNV---KALYRRSQAHLKTSE-----------LEKAEADIKRALTIDPNNRVVK 180 (209)
Q Consensus 115 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~ 180 (209)
+|.-++..|++-+|++..+..+...+++. -.+..-|.++..+.. +-.|+..+.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999998876665 344555666655542 2358889999999999886665
Q ss_pred HHHHHHHHHHHHHHH
Q 028390 181 LVYMELKDKQREYAK 195 (209)
Q Consensus 181 ~~l~~l~~~~~~~~~ 195 (209)
-.++.-.....-+++
T Consensus 82 ~~la~~l~s~~~Ykk 96 (111)
T PF04781_consen 82 FELASQLGSVKYYKK 96 (111)
T ss_pred HHHHHHhhhHHHHHH
Confidence 555554333444443
No 399
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=69.44 E-value=64 Score=26.73 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=77.7
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390 64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
...|..+...++|..|-.+|-+|.+-+..-... ......-=|.-++.+...+-+--.++-....+++......
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~-------v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD-------VKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCc-------HHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 345555556689999999999998866543321 0111122255555555443333344555566778888889
Q ss_pred HHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 144 KALYRRSQAHLKT--SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 144 ~~~~~~a~~~~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
.++-..|.++.+. .+|+.|+..|+.=+. .|+-+..++..+++.+=
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~---~D~ivr~Hl~~Lyd~lL 332 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELA---EDPIVRSHLQSLYDNLL 332 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHh---cChHHHHHHHHHHHHHH
Confidence 9999999888754 489999999987775 45677778877776553
No 400
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=68.89 E-value=84 Score=27.85 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=36.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHH
Q 028390 116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAE 163 (209)
Q Consensus 116 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~ 163 (209)
|..--..|++..|...++++.+-.|+...+-++.+......|..+.+.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 333445678888888888888777888888888888888888887777
No 401
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=68.81 E-value=14 Score=30.18 Aligned_cols=67 Identities=6% Similarity=0.106 Sum_probs=49.8
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhH-HHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLN-NAACKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
..+.-..+.|.|.+--..|.+++..-|.+.+ +|.. -+.-+...++++.|...+.++++++|.++
T Consensus 112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd---------------lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVD---------------LWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCce---------------eeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 3444445566888888999999998777655 3333 33445667899999999999999999987
Q ss_pred HHH
Q 028390 144 KAL 146 (209)
Q Consensus 144 ~~~ 146 (209)
..|
T Consensus 177 ~iw 179 (435)
T COG5191 177 RIW 179 (435)
T ss_pred hHH
Confidence 654
No 402
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=68.78 E-value=19 Score=24.89 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
.........-...|..+...|++.+|..+|-+||...|.
T Consensus 57 ~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 57 EEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 344445666778999999999999999999999998765
No 403
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.55 E-value=72 Score=26.99 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=63.6
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC--------------HHHH
Q 028390 63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED--------------YSET 128 (209)
Q Consensus 63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------~~~A 128 (209)
.+..|+.+|-.|+|+.|...|..+..-+..+... ...+.+.--.|.|.+..+. ++.|
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw---------~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A 281 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW---------KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENA 281 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH---------HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHH
Confidence 4678999999999999999999988866554432 2233344555555555553 2333
Q ss_pred HHHHHHH----hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 129 SSLCTKV----LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 129 ~~~~~~a----l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
...|.++ .........+.+..+.++...+.+.+|...+-+....
T Consensus 282 ~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 282 YYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 3344442 1111233455666777888888887777766666544
No 404
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.90 E-value=23 Score=28.40 Aligned_cols=51 Identities=29% Similarity=0.285 Sum_probs=41.6
Q ss_pred hhcCHHHHHHHHHHHhhhCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 121 KLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
+..+.++|+..+.+++++.+.. .+++-..-.++++++++++-...|++.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4568999999999999998764 67888888899999998887777766553
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.53 E-value=38 Score=23.39 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh--hhCCCchHHHHHHHH
Q 028390 74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL--ELEPLNVKALYRRSQ 151 (209)
Q Consensus 74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~a~ 151 (209)
+.-..-...+.+++..+..++...+|. =|..+-..|...-. .+...+.... .+....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~----------RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDE----------RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-H----------HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCH----------HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 444555678888888887655432222 13444344433333 6677776655 467778888999999
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 028390 152 AHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 152 ~~~~~~~~~~A~~~~~~a~ 170 (209)
.+...|++++|...|..++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 406
>PF13041 PPR_2: PPR repeat family
Probab=67.32 E-value=19 Score=19.91 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=18.3
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLEL 138 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 138 (209)
.|+.+-..+.+.|++++|.+.+++-.+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4566666666777777777777666543
No 407
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=66.95 E-value=58 Score=28.72 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 99 DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 99 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
.++.+..+..+..|+.+-.-+... .++++...|+..+...|..+.+|-.-...-...++|+.-...|.+++.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555566677777776655444 888999999999999999888888888888888999988888888875
No 408
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.31 E-value=30 Score=21.70 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=6.6
Q ss_pred HHHHHhhcCHHHHHHHH
Q 028390 116 AACKLKLEDYSETSSLC 132 (209)
Q Consensus 116 a~~~~~~~~~~~A~~~~ 132 (209)
|.-.-..|+|++|+..|
T Consensus 13 Ave~D~~g~y~eAl~~Y 29 (77)
T cd02683 13 AVELDQEGRFQEALVCY 29 (77)
T ss_pred HHHHHHhccHHHHHHHH
Confidence 33333334444444333
No 409
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=66.04 E-value=30 Score=21.88 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=34.1
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390 153 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 198 (209)
Q Consensus 153 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 198 (209)
+.+....+-|+.++.--+.-+|+|..+.........+.++..+.-.
T Consensus 5 L~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~~~Ye 50 (78)
T PF12652_consen 5 LREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLKKEYE 50 (78)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556668888888888899999999998888776666554433
No 410
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.99 E-value=19 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=6.2
Q ss_pred hcCHHHHHHHHHHHh
Q 028390 122 LEDYSETSSLCTKVL 136 (209)
Q Consensus 122 ~~~~~~A~~~~~~al 136 (209)
.|..++|+.+|.+++
T Consensus 21 ~g~~e~Al~~Y~~gi 35 (79)
T cd02679 21 WGDKEQALAHYRKGL 35 (79)
T ss_pred cCCHHHHHHHHHHHH
Confidence 344444444444433
No 411
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.86 E-value=67 Score=25.28 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHhHHHHHHHh----hcCHHHHHHHHHHHhhhCCCc-hHHHHHHHHHHhccC-------CHHHHHHHHHHHHhcCCCCHH
Q 028390 111 CYLNNAACKLK----LEDYSETSSLCTKVLELEPLN-VKALYRRSQAHLKTS-------ELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 111 ~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~a~~l~p~~~~ 178 (209)
+.+++|..|.. ..++.+|..++.++....... ..+.+++|.+|..-. +...|...|.++-... ++.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 56667777765 347777777777777665433 344666776666642 2235666666665544 344
Q ss_pred HHHHHHHH
Q 028390 179 VKLVYMEL 186 (209)
Q Consensus 179 ~~~~l~~l 186 (209)
+...+..+
T Consensus 189 a~~~lg~~ 196 (292)
T COG0790 189 AQLLLGRM 196 (292)
T ss_pred HHHHHHHH
Confidence 44444433
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.74 E-value=15 Score=27.44 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=27.0
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390 151 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 188 (209)
Q Consensus 151 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~ 188 (209)
.+..+.|.|++|...+++..+ +|++..-...|..|-+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 467788888888888888888 7777655555555533
No 413
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=64.47 E-value=17 Score=18.64 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHhhhCCCchHHHHHHH
Q 028390 124 DYSETSSLCTKVLELEPLNVKALYRRS 150 (209)
Q Consensus 124 ~~~~A~~~~~~al~~~p~~~~~~~~~a 150 (209)
+++.|...|++.+...| +++.|.+.|
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 45666667777666654 355555554
No 414
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.94 E-value=30 Score=20.87 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=12.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
...|.-.-..|++++|+..|..+++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444445555555555555443
No 415
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=63.71 E-value=37 Score=24.33 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhc
Q 028390 52 DTHEKIEACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFH 93 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~ 93 (209)
+.+++......-...|..+...| ++.+|..+|-+||.+.|..
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 45555566677779999999999 9999999999999987764
No 416
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=63.39 E-value=6.2 Score=28.53 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.6
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028390 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
.|++||...|.|.|+. ||+..
T Consensus 54 gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 54 GLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred CCCCCCEEEEEEChHHhcCCCC
Confidence 6999999999999999 99876
No 417
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.38 E-value=1.1e+02 Score=27.07 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc--------------------cCCHHHHHHHHHHHHhcCCCC
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK--------------------TSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~--------------------~~~~~~A~~~~~~a~~l~p~~ 176 (209)
-|....+|.+|+..+..+++.|..+..|.-.+-.-+.. -.+|..++.+|++.+.++.+|
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 34456789999999998888888877765555444443 456778888888888777655
No 418
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.30 E-value=46 Score=27.67 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET 128 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 128 (209)
++...+..+...|+.++..++++.|...|..|..+...-..-. ......+++..|..++.+++++..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~-------~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEK-------HLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999876533111 111233455566666666655543
No 419
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=62.56 E-value=18 Score=17.91 Aligned_cols=25 Identities=28% Similarity=0.225 Sum_probs=12.9
Q ss_pred HHHHHHHhhhCCCchHHHHHHHHHH
Q 028390 129 SSLCTKVLELEPLNVKALYRRSQAH 153 (209)
Q Consensus 129 ~~~~~~al~~~p~~~~~~~~~a~~~ 153 (209)
+.....++..+|.+..++..|-.+.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 3445555555665555555444333
No 420
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=61.89 E-value=18 Score=17.62 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=13.9
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
|+.+-.+|.+.|++++|...+....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444455556666666666655543
No 421
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.65 E-value=1e+02 Score=27.47 Aligned_cols=105 Identities=13% Similarity=-0.014 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh-cCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
.....+++..-..+-+.|.|..|.+...-.+.+.|. +|-. +.+-+-...++.++|+=-|..++..
T Consensus 339 R~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~--------------~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 339 RQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG--------------ILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh--------------HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555566666667889999999998888888777 4431 3344444444556666555555554
Q ss_pred hhhCC--CchHHHHHHHHHH--hccCC---HHHHHHHHHHHHhcCCC
Q 028390 136 LELEP--LNVKALYRRSQAH--LKTSE---LEKAEADIKRALTIDPN 175 (209)
Q Consensus 136 l~~~p--~~~~~~~~~a~~~--~~~~~---~~~A~~~~~~a~~l~p~ 175 (209)
-..+. ..+..-|..|.|+ ..... -+.|...+.+|+...|.
T Consensus 405 e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 22221 1122234444444 44443 56789999999998883
No 422
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=63 Score=26.76 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=71.2
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-----CC
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-----EP 140 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p 140 (209)
....++..++|.+|+..-...++-+....+ ..+++.++..-+.+|..+.+..+|...++.|-.. +|
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDD---------K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp 204 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDD---------KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP 204 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccc---------ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC
Confidence 556678889999999998888776654332 2456667888889999999999998888776532 44
Q ss_pred CchHHH--HHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 141 LNVKAL--YRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 141 ~~~~~~--~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+-..+- ..-|..+..-.||..|..+|-.|++-
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 443332 33466666678899999999888874
No 423
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=61.12 E-value=48 Score=22.36 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028390 49 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
...+...-...+..+..+|..++..|+.+.|--.|.+.+.+.
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345777778899999999999999999999999999998877
No 424
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=60.95 E-value=95 Score=26.66 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=72.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC--------------CC-hHHH----HHHHHHHHHHHhHHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS--------------FT-DDEK----HQANGLRLSCYLNNAACKL 120 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------~~-~~~~----~~~~~~~~~~~~~~a~~~~ 120 (209)
....+..|...+..++|..++.++..||+..-.-.. .+ ++.. .....-..-.+..++.|.
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl- 109 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL- 109 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH-
Confidence 344568899999999999999999999976432110 00 0000 000001111122222222
Q ss_pred hhcCHHHHHHHHHHHhhhCCCc----------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390 121 KLEDYSETSSLCTKVLELEPLN----------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 187 (209)
Q Consensus 121 ~~~~~~~A~~~~~~al~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~ 187 (209)
.-|...+.-.|.. ...|..+-.+|++.|+..+|++.-...+--+|++..+...+..=+
T Consensus 110 ---------~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 110 ---------RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred ---------HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 2222222222221 256777889999999999999999888888999999988777654
No 425
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.75 E-value=1.3e+02 Score=26.78 Aligned_cols=117 Identities=9% Similarity=0.057 Sum_probs=86.0
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
...+.....-....|++......|..++--+..... .|.+.+......|....|-..+.++.++.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e---------------fWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDE---------------FWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH---------------HHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 344555666667789999999999999876544433 47777777777799999988888888764
Q ss_pred -CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 140 -PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 140 -p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
|..+-....-|..-...|++..|...|.++.+--|+...+.-....+..+..
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 5556666666777778889999999999998777887665555444444443
No 426
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=59.10 E-value=22 Score=17.75 Aligned_cols=27 Identities=33% Similarity=0.219 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcc----CCHHHHHHHHHHHHh
Q 028390 145 ALYRRSQAHLKT----SELEKAEADIKRALT 171 (209)
Q Consensus 145 ~~~~~a~~~~~~----~~~~~A~~~~~~a~~ 171 (209)
+.+.+|.+|..- .+..+|..+++++-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 455555555432 256666666666543
No 427
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.78 E-value=1.1e+02 Score=25.95 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=54.2
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
.+.+.+-+=.+|+..+.|+.|-....++.-- +..+...+|.+|.+..-+.+|..|..++-.|+...|.+
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3445666667888889999988777776522 12346678889999999999999999999999999974
No 428
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.39 E-value=24 Score=18.02 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=15.3
Q ss_pred HHHHHHH--HHHhccC-----CHHHHHHHHHHHHh
Q 028390 144 KALYRRS--QAHLKTS-----ELEKAEADIKRALT 171 (209)
Q Consensus 144 ~~~~~~a--~~~~~~~-----~~~~A~~~~~~a~~ 171 (209)
.+.+.+| .+|..-. +.++|..+|+++-+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4555666 3333332 45667777776654
No 429
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=57.75 E-value=29 Score=31.86 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCc-hHHHHHHHHHHhccCCHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLN-VKALYRRSQAHLKTSELEKAEADI 166 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~ 166 (209)
.|-+.|+|+.|.....+.. .|.. ...|...+.-+...|+|.+|.+.|
T Consensus 800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 3444455555544443332 1222 334555666666666666655544
No 430
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.35 E-value=22 Score=22.29 Aligned_cols=25 Identities=16% Similarity=-0.005 Sum_probs=13.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 147 YRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
..+|.-.-..|++++|+.+|..+++
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444455555555555555544
No 431
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.04 E-value=91 Score=24.27 Aligned_cols=63 Identities=10% Similarity=-0.102 Sum_probs=49.9
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 143 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 143 (209)
-...+.+.+..++|+.....-++-.|.+... ...+=..+.-.|+|++|...++.+-++.|...
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~---------------RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGG---------------RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccc---------------hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456778899999999999988887776653 34444556678999999999999999999874
No 432
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.91 E-value=56 Score=31.32 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKA 86 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~a 86 (209)
++.+....|-..|....+.|...+|++.|.+|
T Consensus 1099 e~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1099 ERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 34444556778888899999999999998775
No 433
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=56.33 E-value=46 Score=22.01 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=47.2
Q ss_pred HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-C-HHHHHHHH
Q 028390 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-N-RVVKLVYM 184 (209)
Q Consensus 107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~-~~~~~~l~ 184 (209)
........-+..|+..++.+..+..+....+.-..-+....-.+.+.....+...|...+++....... + ..++..+.
T Consensus 12 ~W~~~Le~As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~ 91 (100)
T PF08771_consen 12 LWYEALEEASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREWLKRYERTGDETDLNQAWDIYY 91 (100)
T ss_dssp HHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHhhHHHHHHHHH
Confidence 344455556667778888888888887776553222333445555555666777888887776553221 1 34444444
Q ss_pred HHHHHH
Q 028390 185 ELKDKQ 190 (209)
Q Consensus 185 ~l~~~~ 190 (209)
.|..++
T Consensus 92 ~v~~~i 97 (100)
T PF08771_consen 92 QVYRRI 97 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 434
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.17 E-value=1.3e+02 Score=31.50 Aligned_cols=105 Identities=17% Similarity=0.064 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390 56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135 (209)
Q Consensus 56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 135 (209)
+...++.|...|......|+++.|-.+.-+|.+.. . ..++..+|......|+-..|+..++..
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~--------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---L--------------PEIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---c--------------chHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44557777888888888888888888877776642 1 236888888888888888888888888
Q ss_pred hhhC-CC----------c------hHHHHHHHHHHhccCCH--HHHHHHHHHHHhcCCCCH
Q 028390 136 LELE-PL----------N------VKALYRRSQAHLKTSEL--EKAEADIKRALTIDPNNR 177 (209)
Q Consensus 136 l~~~-p~----------~------~~~~~~~a~~~~~~~~~--~~A~~~~~~a~~l~p~~~ 177 (209)
+..+ |+ . .++.+..+.=....+++ ..-+.+|..+.++.|...
T Consensus 1729 l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1729 LSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred HHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 8553 22 1 12233333333344443 345667777888877433
No 435
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=56.10 E-value=67 Score=22.43 Aligned_cols=85 Identities=13% Similarity=-0.030 Sum_probs=61.0
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCC---------------chHHHHHHHHHHhccCCHHHHHHHHHH----HHhc
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPL---------------NVKALYRRSQAHLKTSELEKAEADIKR----ALTI 172 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~----a~~l 172 (209)
+..+|...++.+++-.++-.|+.|+.+-.+ ++-...++|.-+..+|+-+-.+++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567788888888888888888888754211 244568899999999999999999864 4566
Q ss_pred CCCC-----HHHHHHHHHHHHHHHHHHHH
Q 028390 173 DPNN-----RVVKLVYMELKDKQREYAKY 196 (209)
Q Consensus 173 ~p~~-----~~~~~~l~~l~~~~~~~~~~ 196 (209)
-|.. ......+.=++..+-.+-+.
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F~KR 112 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDFMKR 112 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHHHHh
Confidence 6643 34456666677766666543
No 436
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.73 E-value=86 Score=23.56 Aligned_cols=49 Identities=6% Similarity=0.078 Sum_probs=35.2
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEK 161 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~ 161 (209)
-.....++++.|.|++|.+.+.+... +|++.+.-..+...-.+.+.+..
T Consensus 114 k~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 114 KEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 34455678899999999999999999 88887765555554444444333
No 437
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=55.01 E-value=1.5e+02 Score=26.29 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390 74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH 153 (209)
Q Consensus 74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 153 (209)
..|.-|+-.+-..-++.|.....+. +.-|.+|+....+. .+..++-.|..+|-.+
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~~-----------------------~~l~~~AI~sa~~~--Y~n~HvYPYty~gg~~ 328 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPTP-----------------------LELFNEAISSARTY--YNNHHVYPYTYLGGYY 328 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS--H-----------------------HHHHHHHHHHHHHH--CTT--SHHHHHHHHHH
T ss_pred hhCchhhhhhHhHHhhccCCCCCCH-----------------------HHHHHHHHHHHHHH--hcCCccccceehhhHH
Confidence 4677788887777777666444220 01133444443333 2344566677778788
Q ss_pred hccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHH
Q 028390 154 LKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKD 188 (209)
Q Consensus 154 ~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~l~~ 188 (209)
++.+++.+|+..+-.+-.. ..+|.++.+.+-.|..
T Consensus 329 yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAn 369 (618)
T PF05053_consen 329 YRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIAN 369 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHH
Confidence 8888888888877766443 2355666666665543
No 438
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.98 E-value=48 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=7.7
Q ss_pred HhccCCHHHHHHHHHHHH
Q 028390 153 HLKTSELEKAEADIKRAL 170 (209)
Q Consensus 153 ~~~~~~~~~A~~~~~~a~ 170 (209)
....|++++|+..|..++
T Consensus 18 ~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 18 ADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 333444444444444433
No 439
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.22 E-value=1.1e+02 Score=24.55 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=68.6
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
.+-+.++.++-..||..|+...+++++.+..+....+ ......+....+..---++...+++|.+++.....-.+.-.+
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee-~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEE-PAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 3446677788899999999999999998854332111 111223444444444456677899999998887666554333
Q ss_pred c-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 142 N-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 142 ~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
- ++.+----..|.+.+++......- .+---+|+|
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~-~~WL~~p~N 150 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVA-SAWLQDPSN 150 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhCccc
Confidence 3 333333345666777776554333 233335655
No 440
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=54.17 E-value=63 Score=21.54 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 158 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 158 (209)
.......|...+..|+|..|.+...++-+..+...-.+.--|.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 33456667777778888888888888866655545455555555555543
No 441
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=54.04 E-value=53 Score=21.89 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
-+.+.+......|...+-.|+|..|.+...++-+.
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 35666778889999999999999999999999665
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.05 E-value=1.1e+02 Score=24.05 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=53.4
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC--------HHHHHHH
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED--------YSETSSL 131 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~ 131 (209)
.+.+..-+..+++.|++..|...-.-.|+.+........++ ...+++.+...... ...|+.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~----------~~~rl~~l~~~~~~~~p~r~~fi~~ai~W 79 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE----------SIARLIELISLFPPEEPERKKFIKAAIKW 79 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH----------HHHHHHHHHHHS-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 44556667778888999888887777676665533221111 11233333332221 1233333
Q ss_pred HHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHH
Q 028390 132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 167 (209)
Q Consensus 132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (209)
. +.-...-.++..+..+|..|.+-+++.+|..+|-
T Consensus 80 S-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 80 S-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp H-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred H-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3 2222233467888999999999999999988774
No 443
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=52.99 E-value=41 Score=27.79 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=41.2
Q ss_pred hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 028390 122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 168 (209)
Q Consensus 122 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (209)
.+..-+|+..++.++..+|.|....+.+..+|..+|-.+.|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34456888899999999999999999999999999999999887743
No 444
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=52.94 E-value=12 Score=30.78 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=37.0
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ 151 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~ 151 (209)
.+.++..++..+..+.++++|++++..+....|.+....-.+..
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 45689999999999999999999999999999988665444433
No 445
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.57 E-value=28 Score=16.99 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=15.7
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVL 136 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al 136 (209)
|+.+-.++.+.|+++.|...++.-.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555666666777777666665543
No 446
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.42 E-value=74 Score=22.51 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 51 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 51 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
.+..+.......-...|..++..|+++++..++..||.+.+.
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 455666666777778999999999999999999999998765
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.28 E-value=45 Score=19.81 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390 133 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 133 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
...++....+..-+...-.-+..+|++++|..+++...
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444455556666667778888888877776654
No 448
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.12 E-value=87 Score=26.89 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHH
Q 028390 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKD 188 (209)
Q Consensus 118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~l~~ 188 (209)
..+++|+++.|.+.+... +.. ..|-++|.+....|+++-|...|.++-.+ .-+|.+....+..+..
T Consensus 327 LAl~lg~L~~A~~~a~~~---~~~--~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL---DDP--EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC---STH--HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhc---CcH--HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHH
Confidence 345789999987766443 332 26889999999999999999998876443 2455655555555444
No 449
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=51.40 E-value=49 Score=22.84 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=13.3
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 113 LNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
..+|..++..|++++|..++-+|+...|.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 34444444444555554444444444443
No 450
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=51.35 E-value=49 Score=28.16 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=39.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 028390 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPN--NRVVKLVYMEL 186 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l 186 (209)
+..|-+|+-+++|.+|+..+..+|-.-...-..+-+++-+|...+ +++.-...+.-++.+.|. |..+...++.+
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek 352 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEK 352 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHH
Confidence 456777777778888877777766442222222233344444443 344444455566667774 23444444433
No 451
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=50.79 E-value=94 Score=24.35 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHh
Q 028390 76 YWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 136 (209)
Q Consensus 76 ~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 136 (209)
-+.|...|..|+.+... -++. .+...-+..|.+..|.. +++.++|+.....++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt--------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT--------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45788889999887543 2221 24455566666666664 588888887666665
No 452
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.75 E-value=1.4e+02 Score=24.38 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=69.9
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh-----hC
Q 028390 65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE-----LE 139 (209)
Q Consensus 65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~ 139 (209)
.....+++.|+|.+|+...+..+.-+....+. ..++.+|.--+.+|...++..++...++.|-. .+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK---------~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC 200 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDK---------INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC 200 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc---------cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Confidence 35667789999999999988887766543321 23556788888899999988888777766543 25
Q ss_pred CCchHHHHH--HHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 140 PLNVKALYR--RSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 140 p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
|+-..+-.. -|.....-.+|..|..+|-.+++-.
T Consensus 201 Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 201 PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred CHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 554443333 3555666678888888888887643
No 453
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=49.40 E-value=33 Score=33.37 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS 95 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~ 95 (209)
....+..+-.|+.+...|.|.+|+..|..|+..+....+
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D 277 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSND 277 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCc
Confidence 455777889999999999999999999999998776444
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.25 E-value=1.6e+02 Score=24.78 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=41.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHH--hhcCHHHHHHHHH
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL--KLEDYSETSSLCT 133 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~ 133 (209)
......+..+|+.++|..|...|..++....+... .-....+..++.+|. -.=++++|.+.++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~----------~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVN----------HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhh----------hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44456777999999999999999999876332111 112334455555554 4556777777776
No 455
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.18 E-value=1.5e+02 Score=24.14 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=53.8
Q ss_pred HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh----h--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----L--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
.=++..+-..+...+++.|+|.+|+.....++. . .|.-...+..-+.+|....+..++...+..|..+
T Consensus 121 ~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 121 KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 344556677888899999999999998877763 2 3555788888999999999999998888777554
No 456
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=46.21 E-value=72 Score=19.91 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH
Q 028390 51 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 90 (209)
Q Consensus 51 ~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~ 90 (209)
....+....+..+.+.|.-++.+|++-.|+..+.=|--++
T Consensus 26 ~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 26 DAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999999877665543
No 457
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=45.81 E-value=1.7e+02 Score=25.49 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHhhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390 124 DYSETSSLCTKVLELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNN 176 (209)
Q Consensus 124 ~~~~A~~~~~~al~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~ 176 (209)
-.+.|...+.++-...--...+|..-| .-|+..|+..-|...|+-.+.-.|++
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~ 465 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDS 465 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCc
Confidence 344555555555443312222222222 23445555555555555555555544
No 458
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.22 E-value=4e+02 Score=28.26 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=59.6
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~ 173 (209)
...+..|.+.|.+..+.|+++.|......|.+.. -+.++.-+|+.+-..|+...|+..+++.++++
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4467789999999999999999999999998877 47789999999999999999999999999764
No 459
>PF15469 Sec5: Exocyst complex component Sec5
Probab=45.09 E-value=94 Score=22.77 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=26.9
Q ss_pred hccCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHH
Q 028390 154 LKTSELEKAEADIKRALTIDP----NNRVVKLVYMELKDKQREYAK 195 (209)
Q Consensus 154 ~~~~~~~~A~~~~~~a~~l~p----~~~~~~~~l~~l~~~~~~~~~ 195 (209)
...|+|+.++.+|.++..+.. ..+.....+..|...+..++.
T Consensus 97 i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~ 142 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFRE 142 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888776632 334555666666666655554
No 460
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.95 E-value=66 Score=26.87 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=65.7
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh-hh-
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL-EL- 138 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~- 138 (209)
..++..++...+++.....+....+|+........ ....++.-+..+.++.++|.-+...++--+ ++
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-----------qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~ 171 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-----------QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEIC 171 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-----------chhhhHHHHHHHHHHhhcccccCCccchhHHHHh
Confidence 34555666666666666667777777665543332 245567778888888999888776664322 22
Q ss_pred --CCCch-----HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 139 --EPLNV-----KALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 139 --~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
+|+.. ..+|.=|..+..+++|+.|+.+|..++-.
T Consensus 172 ~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 172 KANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred ccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 33332 22344567788899999999999888753
No 461
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=25 Score=26.14 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=18.4
Q ss_pred CCCCccEEEEEeCccc-ccccC
Q 028390 2 TMKKEEQATVTISAEY-LCSHE 22 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~ 22 (209)
-|+.||...++|.|++ ||..+
T Consensus 18 g~c~ge~rkvv~pp~l~fg~~~ 39 (188)
T KOG0549|consen 18 GMCNGEKRKVVIPPHLGFGEGG 39 (188)
T ss_pred hhhccccceeccCCcccccccc
Confidence 3899999999999999 99544
No 462
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.85 E-value=1.1e+02 Score=27.55 Aligned_cols=68 Identities=22% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHH
Q 028390 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID--------PNNRVVKLVYMELKD 188 (209)
Q Consensus 117 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~--------p~~~~~~~~l~~l~~ 188 (209)
.+.+++|+++.|.+...+ .++..-|-.+|.+....+++..|.+++.++..+. .+|.+....++..-+
T Consensus 645 elal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 345677888887665543 3456668889999999999999999999887653 345555555555444
Q ss_pred H
Q 028390 189 K 189 (209)
Q Consensus 189 ~ 189 (209)
+
T Consensus 720 ~ 720 (794)
T KOG0276|consen 720 K 720 (794)
T ss_pred h
Confidence 3
No 463
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=43.60 E-value=74 Score=27.53 Aligned_cols=58 Identities=9% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 170 (209)
.+|+.-.......++-+.|+....+++...|. ..++++.+|...++-+....+|+++.
T Consensus 303 evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 303 EVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 46777777788888889999988888888776 67888988888887666655555543
No 464
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.05 E-value=2.2e+02 Score=24.47 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
...+-|-...+.|..+-..+++..|+.+|.++|.+.-.
T Consensus 17 ~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 17 AAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 34556777889999999999999999999999998766
No 465
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.60 E-value=2.9e+02 Score=25.92 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-CCCc
Q 028390 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPLN 142 (209)
Q Consensus 108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~ 142 (209)
...++..-|.-.++.|+|++|...|-+.|.. +|..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~ 402 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE 402 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH
Confidence 4567788888899999999999999888863 4443
No 466
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=42.59 E-value=1.2e+02 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=22.9
Q ss_pred hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHh
Q 028390 122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHL 154 (209)
Q Consensus 122 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 154 (209)
.-+.+.|...|..+++..|++..++..+-..+.
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 334588888999999999999888777665544
No 467
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.59 E-value=2.3e+02 Score=23.73 Aligned_cols=130 Identities=12% Similarity=-0.061 Sum_probs=83.6
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc---CCCC------------hH---HHHHHHHHHHHHHhHHHHHHHhhc
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---HSFT------------DD---EKHQANGLRLSCYLNNAACKLKLE 123 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~---~~~~------------~~---~~~~~~~~~~~~~~~~a~~~~~~~ 123 (209)
.-.+.|..++..++|.+....+..+=.....+ .... +| +-+-..-....+...+|.-|+...
T Consensus 60 ~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~n 139 (449)
T COG3014 60 WDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLN 139 (449)
T ss_pred HhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhc
Confidence 34578888999999988777666553322211 0000 01 111122334556777888999999
Q ss_pred CHHHHHHHHHHHhhh------------------------CCCch-----------HHHHHHHHHHhccCCHHHHHHHHHH
Q 028390 124 DYSETSSLCTKVLEL------------------------EPLNV-----------KALYRRSQAHLKTSELEKAEADIKR 168 (209)
Q Consensus 124 ~~~~A~~~~~~al~~------------------------~p~~~-----------~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (209)
+++.|+.-++++.+. +|+.. ..|.+...-|..-+++-.+-.+|..
T Consensus 140 D~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~ 219 (449)
T COG3014 140 DSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLS 219 (449)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 999998888887743 12211 2355567777777788888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Q 028390 169 ALTIDPNNRVVKLVYMELKDKQRE 192 (209)
Q Consensus 169 a~~l~p~~~~~~~~l~~l~~~~~~ 192 (209)
++-..|++ ++.+....+.++..-
T Consensus 220 ~lf~a~n~-dv~kg~~~~~e~~gi 242 (449)
T COG3014 220 GLFYALNG-DVNKGLGYLNEAYGI 242 (449)
T ss_pred HHhcccCc-cHhHHHHHHHHHhcc
Confidence 88888877 777777777666543
No 468
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=39.06 E-value=93 Score=19.14 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=8.7
Q ss_pred HHHhccCCHHHHHHHHHHHH
Q 028390 151 QAHLKTSELEKAEADIKRAL 170 (209)
Q Consensus 151 ~~~~~~~~~~~A~~~~~~a~ 170 (209)
.-.-..|++++|+..|..++
T Consensus 14 v~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444443
No 469
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=38.98 E-value=98 Score=25.95 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=46.5
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHhhh--CCC--------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 113 LNNAACKLKLEDYSETSSLCTKVLEL--EPL--------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 113 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
+.+..+|+.++++.-+-..+ ++.+. .|+ -+...|.+|.+|....++.+|...++.|+...|.
T Consensus 181 NlL~~iY~Rl~~~~l~~n~l-ka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFL-KASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHH-HhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 55667888999887764433 33332 122 2456899999999999999999999999988876
No 470
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=38.17 E-value=2.9e+02 Score=24.56 Aligned_cols=81 Identities=19% Similarity=0.100 Sum_probs=59.6
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 191 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~ 191 (209)
+..+-.++-...++.-....|++++.... +--+++.+++||... ..+.-...+++..+.+=++...-+.|...++.++
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik 146 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 33444455556667777888888888865 456788899998888 5566667788888888888888888888888766
Q ss_pred HHH
Q 028390 192 EYA 194 (209)
Q Consensus 192 ~~~ 194 (209)
..+
T Consensus 147 ~sk 149 (711)
T COG1747 147 KSK 149 (711)
T ss_pred hhh
Confidence 543
No 471
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.28 E-value=1.9e+02 Score=21.79 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=68.8
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---
Q 028390 66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN--- 142 (209)
Q Consensus 66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 142 (209)
.+..+-+.+..++|+..|...-.- .... +-..+....|.+....|+...|+..++.+-.-.|--
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lekt--g~g~-----------YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKT--GYGS-----------YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhc--CCCc-----------chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 344444556666666666543221 1122 224567888899999999999999999887654321
Q ss_pred -hHHHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHH
Q 028390 143 -VKALYRRSQAHLKTSELEKAEADIKRAL-TIDPNNRVVKLVYMELKDKQREYA 194 (209)
Q Consensus 143 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~l~p~~~~~~~~l~~l~~~~~~~~ 194 (209)
.-+..+-+.++...|-|+.-..-.+..- .-+|--..++..|....-+-..+.
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 3456777888888999887654433211 112223455555555544444443
No 472
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.78 E-value=3.4e+02 Score=24.65 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=11.4
Q ss_pred HHHhccCCHHHHHHHHHHH
Q 028390 151 QAHLKTSELEKAEADIKRA 169 (209)
Q Consensus 151 ~~~~~~~~~~~A~~~~~~a 169 (209)
.||..+|+++++...+..-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 3566667776666655443
No 473
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.91 E-value=1.3e+02 Score=21.32 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=24.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 148 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 148 ~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
.+|..+...|+++++...+-.|+.+.|.-......+
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 367777777777777777777777777655544443
No 474
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.52 E-value=1.1e+02 Score=18.65 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=7.2
Q ss_pred ccCCHHHHHHHHHHHH
Q 028390 155 KTSELEKAEADIKRAL 170 (209)
Q Consensus 155 ~~~~~~~A~~~~~~a~ 170 (209)
..|++++|+..|..++
T Consensus 18 ~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 18 EDGNYEEALELYKEAL 33 (75)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3344444444444443
No 475
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.15 E-value=1.2e+02 Score=27.04 Aligned_cols=55 Identities=7% Similarity=-0.036 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
...-..++..|.+||......-.. .++--|..+|.++.+.++|.+|+..+..+-.
T Consensus 292 t~~r~~~~~l~~~AI~sa~~~Y~n----------~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 292 TPGRPTPLELFNEAISSARTYYNN----------HHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -TTS--HHHHHHHHHHHHHHHCTT------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcC----------CccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 344566899999999876653332 1334589999999999999999988877654
No 476
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=33.06 E-value=1.4e+02 Score=19.43 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028390 55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
.....|......+...+..|.|..|+.....|+..
T Consensus 3 ~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~ 37 (118)
T PF05168_consen 3 DWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEK 37 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999999888888765
No 477
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.98 E-value=7.4e+02 Score=27.76 Aligned_cols=85 Identities=11% Similarity=-0.011 Sum_probs=60.6
Q ss_pred HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH----hccCC----HHHHHHHHHHHHhcCCCCH
Q 028390 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH----LKTSE----LEKAEADIKRALTIDPNNR 177 (209)
Q Consensus 106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~~~----~~~A~~~~~~a~~l~p~~~ 177 (209)
...+..+.-.|....++|++++|-..+..|++++....++|+..|.-. .+... -..|+..|-+|.... .+.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~s 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSS 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cch
Confidence 445667889999999999999999999999999999999999888533 23333 234555555554433 235
Q ss_pred HHHHHHHHHHHHHH
Q 028390 178 VVKLVYMELKDKQR 191 (209)
Q Consensus 178 ~~~~~l~~l~~~~~ 191 (209)
.+++.++++..-++
T Consensus 2888 kaRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLS 2901 (3550)
T ss_pred hhHHHHHHHHHHHH
Confidence 66677777665554
No 478
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=32.90 E-value=1.3e+02 Score=21.57 Aligned_cols=36 Identities=11% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390 148 RRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVY 183 (209)
Q Consensus 148 ~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l 183 (209)
.+|..+...| +.++|...|-+|+.+.|.=.+....+
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iy 131 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIY 131 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4777888888 78888888888888877644444433
No 479
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=32.52 E-value=74 Score=26.07 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390 52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 92 (209)
Q Consensus 52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~ 92 (209)
..+...+.|..+.+.|...-+.|..-+|+..|..|+++-|+
T Consensus 11 ekd~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 11 EKDPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 34456777899999999999999999999999999987443
No 480
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=31.92 E-value=40 Score=25.82 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=27.3
Q ss_pred CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEE
Q 028390 2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYE 36 (209)
Q Consensus 2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~ 36 (209)
.++++.+-.+++...- .|+ |++..+||++.+.+-
T Consensus 104 ~~qI~a~g~lTiqg~pViG~-ggpI~vPp~~~v~I~ 138 (251)
T COG4787 104 NIQIDATGQLTIQGHPVIGE-GGPITVPPGAKVTIA 138 (251)
T ss_pred ceEECcccceecCCCeeecC-CCccccCCCceEEEe
Confidence 3667788888888877 888 669999999887765
No 481
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=31.38 E-value=57 Score=27.47 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH
Q 028390 125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL 159 (209)
Q Consensus 125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~ 159 (209)
...|+.++.+|.. .+.+..|.+.|.+++.+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 4566666666654 55577788888888877753
No 482
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=31.30 E-value=1.6e+02 Score=24.68 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCHH
Q 028390 143 VKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNNRV 178 (209)
Q Consensus 143 ~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~l~p~~~~ 178 (209)
..+++.+|++|.+. +.+..++..|+.+......++.
T Consensus 300 l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 300 LYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 45566666666665 3455677777777665444433
No 483
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=31.08 E-value=3.9e+02 Score=23.91 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHhhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390 123 EDYSETSSLCTKVLELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNRVV 179 (209)
Q Consensus 123 ~~~~~A~~~~~~al~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 179 (209)
.=.+.|...+.++-+.......++..-| .=|+.++|..-|...|+-+++-.++++..
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~y 437 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEY 437 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHH
Confidence 3344444455544433322223333333 23556666666666666666666555443
No 484
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.76 E-value=4e+02 Score=23.93 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHH
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 167 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (209)
.....|..+-..++.++|-..|++.+..+|+ .+++..|+-+++.|-..+|...++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 44 AMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 4456666777778888888888888888887 667778888888888888877666
No 485
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=30.37 E-value=1e+02 Score=20.42 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028390 59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKI 89 (209)
Q Consensus 59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~ 89 (209)
.|......+...+..|.|+.|.....+|++.
T Consensus 3 ~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk 33 (113)
T smart00748 3 RAKRFLEAAKLDLEKGFYDLAAFLSQQAAEL 33 (113)
T ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4667778888888999999988888888764
No 486
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=30.01 E-value=2.1e+02 Score=20.55 Aligned_cols=108 Identities=21% Similarity=0.221 Sum_probs=71.7
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh----cCCCC--------------h--------HHHHHHHHHHHHHHhHH
Q 028390 62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEF----HHSFT--------------D--------DEKHQANGLRLSCYLNN 115 (209)
Q Consensus 62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~----~~~~~--------------~--------~~~~~~~~~~~~~~~~~ 115 (209)
.....+......|+.+.|+....+|...+.. ++.+. + +. -............
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~--~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDD--YVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE--------HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeec--cCChHHHHHHHHH
Confidence 3456778888899999999999999877653 11111 0 11 1123344556788
Q ss_pred HHHHHhhcCHHHHHHHHHHHh-hhC------CC-chHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390 116 AACKLKLEDYSETSSLCTKVL-ELE------PL-NVKALYRRSQAHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 116 a~~~~~~~~~~~A~~~~~~al-~~~------p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 171 (209)
+.-.++.|+...|.+.+..+- +++ |- ....-...+..+...|++.+|...+..++.
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888999999999988886652 111 21 244567889999999999999999988874
No 487
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=29.90 E-value=94 Score=24.89 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=43.0
Q ss_pred HhHHHHHHHhhcCHHHHHHHHHHHhhhCCC---c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390 112 YLNNAACKLKLEDYSETSSLCTKVLELEPL---N---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175 (209)
Q Consensus 112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~ 175 (209)
|.....|+ ..-..+.|.+.++.||-.-.. . .-.-++++.+|+.+.+|+.|..+|.+|..+.-+
T Consensus 43 ~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 43 YFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred Hhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 34443433 334456778888888754211 1 234678899999999999999999999987443
No 488
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=29.59 E-value=3.9e+02 Score=23.40 Aligned_cols=87 Identities=7% Similarity=0.080 Sum_probs=56.5
Q ss_pred HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc--cCCHHHHHHHHHHHHhcCCCC-----H
Q 028390 105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK--TSELEKAEADIKRALTIDPNN-----R 177 (209)
Q Consensus 105 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~l~p~~-----~ 177 (209)
++.+...+..+-.+. ...+-..|++.|..||+-+|+-+.-.+..-..|.+ .++-.--+..|+.++..+|.- +
T Consensus 309 rqqlvetH~~RV~Am-lNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaqmk~ 387 (615)
T KOG3540|consen 309 RQQLVETHEARVEAM-LNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQMKS 387 (615)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 344445555554444 34455689999999999999887655554444444 344445778888899999864 3
Q ss_pred HHHHHHHHHHHHHHH
Q 028390 178 VVKLVYMELKDKQRE 192 (209)
Q Consensus 178 ~~~~~l~~l~~~~~~ 192 (209)
.+...|.-|..++.+
T Consensus 388 qV~thLrvIeeR~Nq 402 (615)
T KOG3540|consen 388 QVMTHLRVIEERINQ 402 (615)
T ss_pred HHHHHHHHHHHHhcc
Confidence 445566666666554
No 489
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=29.50 E-value=1.5e+02 Score=19.50 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 91 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~ 91 (209)
...+..+.-.+....+.|+|++|.....+|=..+.
T Consensus 12 aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~ 46 (97)
T cd00215 12 AGNARSKALEALKAAKEGDFAEAEELLEEANDSLN 46 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34567777888899999999999999888866543
No 490
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.47 E-value=2.7e+02 Score=21.61 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHH---------hhcCHHHHHHHHHHHhhhCCCc
Q 028390 105 NGLRLSCYLNNAACKL---------KLEDYSETSSLCTKVLELEPLN 142 (209)
Q Consensus 105 ~~~~~~~~~~~a~~~~---------~~~~~~~A~~~~~~al~~~p~~ 142 (209)
+...+.+|-..|..++ ..++...|+..+.+|+.++|..
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 4667778888888774 4568899999999999999875
No 491
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=28.97 E-value=3.5e+02 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=22.7
Q ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390 111 CYLNNAACKLKLEDYSETSSLCTKVLELEP 140 (209)
Q Consensus 111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 140 (209)
+-..+|.|..++|+..+|++.+....+-.|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 446678888888888888888877766555
No 492
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.93 E-value=1.4e+02 Score=24.52 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 141 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 141 (209)
+.++..-|..--+.|...+|+..|..|+++-|+
T Consensus 19 A~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 19 AIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 444455555555566666666666666666554
No 493
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=28.84 E-value=1.6e+02 Score=19.52 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHh
Q 028390 57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 91 (209)
Q Consensus 57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~ 91 (209)
-..+..+.-.+....+.|+|+.|.+...+|=..+.
T Consensus 14 aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 14 AGDARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34567777888889999999999998888766543
No 494
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=28.61 E-value=1.1e+02 Score=23.44 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 143 VKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
.++++.+|.|+..+|+...|+.++.++.+.
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999988754
No 495
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.59 E-value=3.8e+02 Score=23.02 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH 94 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~ 94 (209)
.+|.-++-.|....-+++|..|.+++.+|+...|...
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 6677778888888888899999999999988877643
No 496
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.49 E-value=2.9e+02 Score=21.68 Aligned_cols=64 Identities=14% Similarity=-0.053 Sum_probs=44.4
Q ss_pred HHHHhHHHHHHHhhcCHHHHHHHHHHHh----------------hhCCCchHHHHHHHH-HHhccCCHHHHHHHHHHHHh
Q 028390 109 LSCYLNNAACKLKLEDYSETSSLCTKVL----------------ELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALT 171 (209)
Q Consensus 109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al----------------~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~a~~ 171 (209)
..++..+|..+.+.+++.+|..++-..- .-.|.....+..+|. -|..+++...|...+....+
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4578888999999999998888764321 224666777777774 57778999999987766665
Q ss_pred c
Q 028390 172 I 172 (209)
Q Consensus 172 l 172 (209)
.
T Consensus 170 ~ 170 (260)
T PF04190_consen 170 K 170 (260)
T ss_dssp H
T ss_pred H
Confidence 4
No 497
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=28.45 E-value=1.6e+02 Score=19.69 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHh
Q 028390 58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 91 (209)
Q Consensus 58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~ 91 (209)
..+..+.-.+....+.|+|++|.....+|=..+.
T Consensus 18 G~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~ 51 (104)
T PRK09591 18 GNARTEVHEAFAAMREGNFDLAEQKLNQSNEELL 51 (104)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4466777888888999999999999888866543
No 498
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=28.39 E-value=3.5e+02 Score=22.50 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCCchHHHHHHHHHHhccCCHHHH
Q 028390 87 AKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLKTSELEKA 162 (209)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A 162 (209)
++.+.....++ +..+...+..|...+..|+|..|-.++=....+ ++++..++..+--.=.-+.+|+-|
T Consensus 115 l~~L~e~ynf~--------~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A 186 (432)
T KOG2758|consen 115 LQHLQEHYNFT--------PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGA 186 (432)
T ss_pred HHHHHHhcCCC--------HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHhc
Q 028390 163 EADIKRALTI 172 (209)
Q Consensus 163 ~~~~~~a~~l 172 (209)
..++.+.-+.
T Consensus 187 ~edL~rLre~ 196 (432)
T KOG2758|consen 187 LEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHH
No 499
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=28.23 E-value=2.3e+02 Score=20.37 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh-cCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390 60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 137 (209)
Q Consensus 60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 137 (209)
.......++..++.|+.+.|.....-+-.-... ....+ =-......+.+..++..|++.+|-..+..+++
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP--------L~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP--------LAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE--------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC--------HHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 445678999999999999999887655221000 00000 00122357888999999999999998888763
No 500
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.11 E-value=3.3e+02 Score=22.10 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=61.0
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390 61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGL-RLSCYLNNAACKLKLEDYSETSSLCTKVLELE 139 (209)
Q Consensus 61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 139 (209)
.+++..-...|+.+.|++-.+.|.+.+.+......-...++..-..+ .++.--+++. .+.-|+..+..+..| ..+
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~L---LQ~FYeTTL~ALkdA-KNe 141 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDL---LQEFYETTLDALKDA-KNE 141 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHHHhh-hcc
Confidence 45667778889999999999999999987655321111111000000 0001111111 112233333333322 334
Q ss_pred CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390 140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172 (209)
Q Consensus 140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l 172 (209)
.-|.+....+|..|+..++|.+-...+++.-..
T Consensus 142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred eeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 556777788999999999998877777665543
Done!