Query 028392
Match_columns 209
No_of_seqs 168 out of 758
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 10:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 3E-33 6.5E-38 210.3 9.1 85 20-104 1-85 (85)
2 PF07983 X8: X8 domain; Inter 99.9 1.7E-26 3.7E-31 171.7 6.8 72 20-91 1-78 (78)
3 COG3889 Predicted solute bindi 53.3 8 0.00017 40.3 1.8 32 29-63 650-685 (872)
4 cd04366 IlGF_insulin_bombyxin_ 32.2 77 0.0017 21.2 3.4 34 31-68 4-41 (42)
5 PF07803 GSG-1: GSG1-like prot 29.8 37 0.0008 27.7 1.8 43 3-53 13-57 (118)
6 PF10555 MraY_sig1: Phospho-N- 22.2 37 0.00081 17.8 0.4 6 153-158 3-8 (13)
7 COG3889 Predicted solute bindi 20.8 66 0.0014 33.9 2.1 63 31-98 620-682 (872)
8 PF11921 DUF3439: Domain of un 19.5 44 0.00095 27.2 0.5 9 95-103 26-34 (122)
9 PF11921 DUF3439: Domain of un 18.0 47 0.001 27.0 0.4 12 103-114 26-37 (122)
10 cd00101 IlGF_like Insulin/insu 17.8 2.1E+02 0.0046 18.6 3.4 32 31-68 4-40 (41)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=100.00 E-value=3e-33 Score=210.32 Aligned_cols=85 Identities=60% Similarity=1.187 Sum_probs=82.7
Q ss_pred cceeecCCCChHHHHHHHHHhcCCCCCCcccCCCCCccCCCCchhhhhHHHHHHHHHhCCCCCCCCCCCceEEEecCCCC
Q 028392 20 NWCVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPST 99 (209)
Q Consensus 20 lwCVak~~a~~~~Lq~~~dyACG~gaDCs~I~~gGsCySpcT~~~hlSYAfN~YYq~qg~~~~aCDF~G~Atitt~dPS~ 99 (209)
+|||+|+++++++||++|||||++++||++|++||+||+||++++|||||||+|||++++..++|||+|.|++++.||+.
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 59999999999999999999999879999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 028392 100 AGCSY 104 (209)
Q Consensus 100 ~sC~f 104 (209)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99985
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.93 E-value=1.7e-26 Score=171.71 Aligned_cols=72 Identities=50% Similarity=1.005 Sum_probs=63.0
Q ss_pred cceeecCCCChHHHHHHHHHhcCC-CCCCcccCCCCC-----ccCCCCchhhhhHHHHHHHHHhCCCCCCCCCCCceE
Q 028392 20 NWCVCKDGVGDPVLQKALDYACGA-GADCNPIHSNGP-----CYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSAT 91 (209)
Q Consensus 20 lwCVak~~a~~~~Lq~~~dyACG~-gaDCs~I~~gGs-----CySpcT~~~hlSYAfN~YYq~qg~~~~aCDF~G~At 91 (209)
+|||+|+++++++|+++|||||++ ++||++|++||+ .||+|+.++|||||||+|||++++...+|||+|.|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999998 599999999999 899999999999999999999999999999999986
No 3
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=53.27 E-value=8 Score=40.27 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHhcCCCCCCcccCCCCC----ccCCCCch
Q 028392 29 GDPVLQKALDYACGAGADCNPIHSNGP----CYNPNTVK 63 (209)
Q Consensus 29 ~~~~Lq~~~dyACG~gaDCs~I~~gGs----CySpcT~~ 63 (209)
..+.|++++||+=+. -..+..+|. .|.|+-.+
T Consensus 650 a~a~y~a~vnf~n~~---Gh~~is~GPf~L~aydPdk~~ 685 (872)
T COG3889 650 AYAAYVAAVNFINGY---GHAQISNGPFYLEAYDPDKLK 685 (872)
T ss_pred HHHHHHHHHHHHhcc---CceEeccCceEEEEeCcccch
Confidence 456799999999875 345666666 45555433
No 4
>cd04366 IlGF_insulin_bombyxin_like IlGF_like family, insulin_bombyxin_like subgroup. Members include a number of peptides including insulin, insulin-like growth factors I and II, insect prothoracicotropic hormone (bombyxin), locust insulin-related peptide (LIRP), molluscan insulin-related peptides 1 to 5 (MIP), and C. elegans insulin-like peptides. With the exception of insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=32.20 E-value=77 Score=21.18 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCC----ccCCCCchhhhhH
Q 028392 31 PVLQKALDYACGAGADCNPIHSNGP----CYNPNTVKAHCSY 68 (209)
Q Consensus 31 ~~Lq~~~dyACG~gaDCs~I~~gGs----CySpcT~~~hlSY 68 (209)
++|.+.+.++|+.... . ..|- ||.+|+..+=.+|
T Consensus 4 ~~L~~~L~~vC~~~~~-~---~~gIvdeCC~~~Ct~~~L~~Y 41 (42)
T cd04366 4 RHLADTLALLCSEYNS-P---RRGIVDECCRKSCTLDELLSY 41 (42)
T ss_pred HHHHHHHHHHhCCCCC-C---CCChhhccCCCcCCHHHHHhh
Confidence 5788999999986211 1 1222 8999998876665
No 5
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=29.80 E-value=37 Score=27.69 Aligned_cols=43 Identities=35% Similarity=0.603 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCCCcceeecCCCChHHHHHHHHHhcCCC--CCCcccCCC
Q 028392 3 VLVLLALFLGFTGHSTANWCVCKDGVGDPVLQKALDYACGAG--ADCNPIHSN 53 (209)
Q Consensus 3 ~~~~~~l~~~~~~~~~slwCVak~~a~~~~Lq~~~dyACG~g--aDCs~I~~g 53 (209)
+|.+|+|+|+......+.||+-...+.. -.|+.+ ..|-....+
T Consensus 13 ~ln~LAL~~S~tA~~sSyWC~GTqKVpK--------PlC~~~~~~~Ci~~~~~ 57 (118)
T PF07803_consen 13 ILNLLALAFSTTALLSSYWCEGTQKVPK--------PLCGKGKGTNCIHFPSN 57 (118)
T ss_pred HHHHHHHHHHHHHHhcccccccceecCC--------CCCCccccCcCcCCCCC
Confidence 4557778888888889999987766532 247642 457554433
No 6
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=22.23 E-value=37 Score=17.76 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=3.8
Q ss_pred cCCCCC
Q 028392 153 TTPSTG 158 (209)
Q Consensus 153 ~~~~~~ 158 (209)
+||+||
T Consensus 3 gTPTMG 8 (13)
T PF10555_consen 3 GTPTMG 8 (13)
T ss_pred CCccce
Confidence 566666
No 7
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=20.85 E-value=66 Score=33.89 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCcccCCCCCccCCCCchhhhhHHHHHHHHHhCCCCCCCCCCCceEEEecCCC
Q 028392 31 PVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 98 (209)
Q Consensus 31 ~~Lq~~~dyACG~gaDCs~I~~gGsCySpcT~~~hlSYAfN~YYq~qg~~~~aCDF~G~Atitt~dPS 98 (209)
+.+.+.+.++-.+. +----..+-.-|.|.......-=+.| +|.++ ..+=+++|-=.+..-||+
T Consensus 620 ~~ia~vlq~~~~q~-~~P~~~~G~tl~Tpqea~a~y~a~vn-f~n~~---Gh~~is~GPf~L~aydPd 682 (872)
T COG3889 620 FSIARVLQEATTQW-FGPWFVGGITLFTPQEAYAAYVAAVN-FINGY---GHAQISNGPFYLEAYDPD 682 (872)
T ss_pred HHHHHHHHHHhccc-ccccccccceeeCHHHHHHHHHHHHH-HHhcc---CceEeccCceEEEEeCcc
Confidence 55666666666551 11111111145666543333322333 23333 333456665555544443
No 8
>PF11921 DUF3439: Domain of unknown function (DUF3439); InterPro: IPR024592 This uncharacterised C-terminal domain is found in variable lymphocyte receptor proteins. VLR are proteins consisting of leucine-rich repeats (LRR) that are assembled into functional receptors through somatic diversification of the incomplete germ-line VLR gene in lamprey and hagfish []. ; PDB: 3RFJ_A 3G3B_A 2R9U_C 2O6S_A 3A79_B 3RFS_A 2O6R_A 3V47_B 3V44_A 3A7C_A ....
Probab=19.46 E-value=44 Score=27.18 Aligned_cols=9 Identities=56% Similarity=1.084 Sum_probs=4.1
Q ss_pred cCCCCCCcc
Q 028392 95 TDPSTAGCS 103 (209)
Q Consensus 95 ~dPS~~sC~ 103 (209)
.||..-+|.
T Consensus 26 v~PDSAKCS 34 (122)
T PF11921_consen 26 VDPDSAKCS 34 (122)
T ss_dssp B-TTGSBBT
T ss_pred cCCCccccC
Confidence 345445664
No 9
>PF11921 DUF3439: Domain of unknown function (DUF3439); InterPro: IPR024592 This uncharacterised C-terminal domain is found in variable lymphocyte receptor proteins. VLR are proteins consisting of leucine-rich repeats (LRR) that are assembled into functional receptors through somatic diversification of the incomplete germ-line VLR gene in lamprey and hagfish []. ; PDB: 3RFJ_A 3G3B_A 2R9U_C 2O6S_A 3A79_B 3RFS_A 2O6R_A 3V47_B 3V44_A 3A7C_A ....
Probab=18.01 E-value=47 Score=26.99 Aligned_cols=12 Identities=50% Similarity=0.565 Sum_probs=6.0
Q ss_pred ccccccccCCCC
Q 028392 103 SYPSSASTSGTT 114 (209)
Q Consensus 103 ~fp~~~ssaGt~ 114 (209)
.-|.++.=+|+.
T Consensus 26 v~PDSAKCSGTn 37 (122)
T PF11921_consen 26 VDPDSAKCSGTN 37 (122)
T ss_dssp B-TTGSBBTTT-
T ss_pred cCCCccccCCCC
Confidence 445666656654
No 10
>cd00101 IlGF_like Insulin/insulin-like growth factor/relaxin family; insulin family of proteins. Members include a number of active peptides which are evolutionary related including insulin, relaxin, prorelaxin, insulin-like growth factors I and II, mammalian Leydig cell-specific insulin-like peptide (gene INSL3), early placenta insulin-like peptide (ELIP; gene INSL4), insect prothoracicotropic hormone (bombyxin), locust insulin-related peptide (LIRP), molluscan insulin-related peptides 1 to 5 (MIP), and C. elegans insulin-like peptides. Typically, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved
Probab=17.80 E-value=2.1e+02 Score=18.59 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCC-CCCCcccCCCCC----ccCCCCchhhhhH
Q 028392 31 PVLQKALDYACGA-GADCNPIHSNGP----CYNPNTVKAHCSY 68 (209)
Q Consensus 31 ~~Lq~~~dyACG~-gaDCs~I~~gGs----CySpcT~~~hlSY 68 (209)
.+|.+++.++|+. +.. .|- |+.+|+..+=.+|
T Consensus 4 ~~Lv~~l~~vC~~~~~~------~giv~eCC~~~Ct~~~L~~Y 40 (41)
T cd00101 4 RELVRALIFVCGDRGFY------RGIVDECCFRGCTLRELASY 40 (41)
T ss_pred HHHHHHHHHhcCCCCCc------CCcccccCCCCCChHHHHhh
Done!