Query 028394
Match_columns 209
No_of_seqs 350 out of 2773
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 10:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.6E-23 3.6E-28 199.3 12.2 171 28-208 27-216 (968)
2 PLN03150 hypothetical protein; 99.8 2.4E-20 5.2E-25 170.2 11.8 143 25-178 367-513 (623)
3 PLN00113 leucine-rich repeat r 99.5 2.6E-14 5.5E-19 136.6 5.1 103 99-206 160-262 (968)
4 PLN03150 hypothetical protein; 99.4 1.6E-13 3.6E-18 125.5 5.1 95 104-203 419-513 (623)
5 KOG0617 Ras suppressor protein 99.2 8.6E-13 1.9E-17 100.8 -3.9 95 73-179 32-127 (264)
6 KOG0472 Leucine-rich repeat pr 99.1 2.4E-11 5.2E-16 103.3 2.7 112 75-193 389-541 (565)
7 PF13855 LRR_8: Leucine rich r 99.1 1.5E-10 3.2E-15 74.1 3.5 61 103-167 1-61 (61)
8 KOG0617 Ras suppressor protein 99.0 1.7E-11 3.8E-16 93.7 -2.5 120 74-207 56-176 (264)
9 PF08263 LRRNT_2: Leucine rich 99.0 1.2E-09 2.5E-14 65.1 4.4 40 29-70 2-43 (43)
10 PF14580 LRR_9: Leucine-rich r 98.8 5.4E-09 1.2E-13 81.0 5.4 103 75-194 20-127 (175)
11 KOG0444 Cytoskeletal regulator 98.7 3.1E-09 6.7E-14 95.2 -0.3 105 98-209 145-250 (1255)
12 PF13855 LRR_8: Leucine rich r 98.7 2.9E-08 6.3E-13 63.4 4.3 60 75-143 2-61 (61)
13 KOG0444 Cytoskeletal regulator 98.7 3.5E-09 7.6E-14 94.9 -0.2 123 75-209 104-227 (1255)
14 PRK15387 E3 ubiquitin-protein 98.7 2.6E-08 5.7E-13 92.8 5.5 117 75-205 343-470 (788)
15 KOG0472 Leucine-rich repeat pr 98.6 1.1E-08 2.4E-13 87.4 2.3 93 74-176 435-547 (565)
16 KOG4194 Membrane glycoprotein 98.6 2.4E-08 5.2E-13 88.8 4.2 78 128-206 266-343 (873)
17 PRK15370 E3 ubiquitin-protein 98.6 3.2E-07 6.8E-12 85.7 10.8 42 20-65 53-98 (754)
18 PF14580 LRR_9: Leucine-rich r 98.5 7.8E-08 1.7E-12 74.5 3.8 84 74-169 42-127 (175)
19 PF12799 LRR_4: Leucine Rich r 98.5 1.4E-07 3.1E-12 56.3 3.7 37 131-168 1-37 (44)
20 PLN03210 Resistant to P. syrin 98.5 2.5E-07 5.5E-12 90.5 6.3 110 75-197 612-721 (1153)
21 PRK15387 E3 ubiquitin-protein 98.4 1.1E-07 2.4E-12 88.7 3.2 69 103-180 402-470 (788)
22 KOG4194 Membrane glycoprotein 98.4 6.4E-08 1.4E-12 86.2 1.3 93 97-194 263-355 (873)
23 cd00116 LRR_RI Leucine-rich re 98.4 9.7E-08 2.1E-12 79.9 1.1 68 102-169 164-235 (319)
24 KOG0618 Serine/threonine phosp 98.4 4.7E-08 1E-12 90.6 -1.1 104 74-191 383-487 (1081)
25 cd00116 LRR_RI Leucine-rich re 98.3 2.3E-07 5E-12 77.6 2.5 91 103-194 137-235 (319)
26 PRK15370 E3 ubiquitin-protein 98.3 1.8E-06 3.8E-11 80.8 7.3 97 75-193 200-296 (754)
27 COG4886 Leucine-rich repeat (L 98.3 5.1E-07 1.1E-11 78.3 2.9 116 75-205 117-233 (394)
28 PF12799 LRR_4: Leucine Rich r 98.2 9.4E-07 2E-11 52.7 3.0 40 103-148 1-40 (44)
29 KOG0618 Serine/threonine phosp 98.2 1.5E-07 3.2E-12 87.4 -1.0 118 75-205 46-181 (1081)
30 PLN03210 Resistant to P. syrin 98.2 1.6E-06 3.4E-11 85.0 5.9 92 102-200 610-701 (1153)
31 KOG4237 Extracellular matrix p 98.2 6.3E-08 1.4E-12 82.5 -3.4 98 74-180 67-165 (498)
32 KOG4579 Leucine-rich repeat (L 98.2 6E-08 1.3E-12 71.8 -3.7 116 73-201 52-167 (177)
33 KOG0532 Leucine-rich repeat (L 98.2 1.1E-07 2.4E-12 84.3 -3.0 116 75-207 122-237 (722)
34 KOG1259 Nischarin, modulator o 98.1 9.1E-07 2E-11 73.5 1.6 54 151-206 370-425 (490)
35 KOG4237 Extracellular matrix p 98.1 1.2E-06 2.6E-11 74.8 1.6 83 97-183 268-350 (498)
36 KOG0532 Leucine-rich repeat (L 97.9 1.3E-06 2.7E-11 77.8 -1.2 106 75-195 144-249 (722)
37 KOG1259 Nischarin, modulator o 97.9 3.2E-06 6.8E-11 70.3 0.1 102 76-193 286-387 (490)
38 KOG4658 Apoptotic ATPase [Sign 97.8 5.9E-06 1.3E-10 78.5 1.0 83 96-183 564-646 (889)
39 COG4886 Leucine-rich repeat (L 97.8 4.1E-06 8.9E-11 72.6 -0.2 96 75-183 141-236 (394)
40 KOG4579 Leucine-rich repeat (L 97.7 6.9E-07 1.5E-11 66.2 -5.3 99 74-182 27-126 (177)
41 KOG4658 Apoptotic ATPase [Sign 97.7 2E-05 4.3E-10 75.0 2.1 101 102-208 544-646 (889)
42 KOG0531 Protein phosphatase 1, 97.5 4.2E-05 9.2E-10 67.0 1.4 104 74-193 95-199 (414)
43 KOG2982 Uncharacterized conser 97.4 4.1E-05 8.9E-10 63.7 0.1 88 74-168 71-159 (418)
44 PF00560 LRR_1: Leucine Rich R 97.1 0.0002 4.4E-09 35.9 1.0 19 157-176 2-20 (22)
45 KOG1859 Leucine-rich repeat pr 97.1 4.9E-05 1.1E-09 69.8 -2.4 101 76-193 166-267 (1096)
46 PF00560 LRR_1: Leucine Rich R 97.0 0.00023 5.1E-09 35.7 0.8 20 133-153 2-21 (22)
47 KOG1644 U2-associated snRNP A' 97.0 0.00092 2E-08 52.7 4.4 81 75-168 43-126 (233)
48 KOG3207 Beta-tubulin folding c 97.0 0.00012 2.6E-09 63.5 -0.9 44 74-120 146-189 (505)
49 KOG0531 Protein phosphatase 1, 96.9 0.00065 1.4E-08 59.6 3.0 89 99-197 91-179 (414)
50 KOG2739 Leucine-rich acidic nu 96.9 0.001 2.3E-08 54.1 3.8 64 99-168 61-129 (260)
51 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1.1E-08 56.0 1.8 97 102-206 42-148 (260)
52 KOG1859 Leucine-rich repeat pr 96.8 0.00019 4E-09 66.1 -1.5 81 75-169 188-268 (1096)
53 KOG1644 U2-associated snRNP A' 96.6 0.0025 5.4E-08 50.3 4.1 81 76-168 21-101 (233)
54 KOG2123 Uncharacterized conser 96.2 0.00037 7.9E-09 57.6 -3.0 85 75-173 20-106 (388)
55 KOG0473 Leucine-rich repeat pr 96.1 0.0001 2.2E-09 59.4 -6.5 85 73-169 41-125 (326)
56 KOG3207 Beta-tubulin folding c 95.0 0.011 2.3E-07 51.8 1.4 86 75-168 223-314 (505)
57 PF13504 LRR_7: Leucine rich r 95.0 0.017 3.6E-07 27.0 1.4 11 133-143 3-13 (17)
58 KOG0473 Leucine-rich repeat pr 94.9 0.001 2.2E-08 53.8 -4.7 98 98-203 37-134 (326)
59 COG5238 RNA1 Ran GTPase-activa 94.9 0.023 5E-07 47.1 2.8 69 99-168 88-170 (388)
60 PRK15386 type III secretion pr 94.2 0.069 1.5E-06 46.9 4.5 82 75-179 53-138 (426)
61 KOG3665 ZYG-1-like serine/thre 94.0 0.035 7.7E-07 52.0 2.5 88 74-171 173-266 (699)
62 smart00370 LRR Leucine-rich re 93.8 0.045 9.8E-07 28.2 1.6 14 131-144 2-15 (26)
63 smart00369 LRR_TYP Leucine-ric 93.8 0.045 9.8E-07 28.2 1.6 14 131-144 2-15 (26)
64 KOG1909 Ran GTPase-activating 93.7 0.013 2.9E-07 49.7 -0.9 93 75-168 186-283 (382)
65 smart00369 LRR_TYP Leucine-ric 93.5 0.07 1.5E-06 27.4 2.0 20 154-174 1-20 (26)
66 smart00370 LRR Leucine-rich re 93.5 0.07 1.5E-06 27.4 2.0 20 154-174 1-20 (26)
67 KOG3665 ZYG-1-like serine/thre 92.8 0.069 1.5E-06 50.0 2.2 64 99-168 169-233 (699)
68 PRK15386 type III secretion pr 92.6 0.18 3.9E-06 44.3 4.4 65 74-163 72-140 (426)
69 KOG2982 Uncharacterized conser 92.4 0.066 1.4E-06 45.0 1.5 68 101-170 69-136 (418)
70 KOG1909 Ran GTPase-activating 92.0 0.052 1.1E-06 46.3 0.4 91 74-168 157-254 (382)
71 PF13516 LRR_6: Leucine Rich r 91.8 0.036 7.8E-07 28.0 -0.5 12 133-144 4-15 (24)
72 KOG2120 SCF ubiquitin ligase, 90.3 0.044 9.5E-07 46.1 -1.6 58 104-164 186-243 (419)
73 COG5238 RNA1 Ran GTPase-activa 90.1 0.23 4.9E-06 41.4 2.4 93 74-168 30-133 (388)
74 KOG2123 Uncharacterized conser 89.0 0.031 6.8E-07 46.5 -3.4 79 73-161 40-123 (388)
75 smart00364 LRR_BAC Leucine-ric 86.4 0.41 8.9E-06 24.9 1.1 17 132-149 3-19 (26)
76 PF13306 LRR_5: Leucine rich r 86.1 2.4 5.1E-05 30.1 5.4 79 75-165 13-91 (129)
77 smart00365 LRR_SD22 Leucine-ri 84.9 0.79 1.7E-05 23.8 1.7 15 154-168 1-15 (26)
78 smart00368 LRR_RI Leucine rich 81.6 1.2 2.5E-05 23.4 1.6 14 155-168 2-15 (28)
79 KOG2120 SCF ubiquitin ligase, 80.3 0.97 2.1E-05 38.3 1.5 60 100-164 310-372 (419)
80 PF13306 LRR_5: Leucine rich r 78.3 4.5 9.8E-05 28.6 4.4 63 96-164 5-67 (129)
81 PF07172 GRP: Glycine rich pro 64.9 5 0.00011 27.8 1.9 6 1-7 1-6 (95)
82 KOG3763 mRNA export factor TAP 61.2 4.3 9.2E-05 37.0 1.2 85 73-168 217-312 (585)
83 KOG3763 mRNA export factor TAP 60.8 3.9 8.4E-05 37.2 0.9 66 101-171 216-286 (585)
84 TIGR00864 PCC polycystin catio 59.0 7.1 0.00015 42.0 2.5 32 109-144 1-32 (2740)
85 KOG3864 Uncharacterized conser 50.8 3.1 6.8E-05 33.1 -1.2 82 75-164 102-185 (221)
86 TIGR00864 PCC polycystin catio 42.6 15 0.00032 39.8 1.7 34 80-118 1-34 (2740)
87 smart00367 LRR_CC Leucine-rich 32.4 32 0.00069 17.2 1.3 12 131-142 2-13 (26)
88 KOG4308 LRR-containing protein 24.2 6.1 0.00013 35.6 -3.9 43 74-116 172-217 (478)
89 PF13260 DUF4051: Protein of u 23.3 62 0.0013 19.4 1.5 15 28-42 29-43 (54)
90 TIGR03715 KxYKxGKxW KxYKxGKxW 23.0 94 0.002 16.2 2.1 19 1-19 6-24 (29)
91 KOG1947 Leucine rich repeat pr 20.4 67 0.0015 27.9 1.9 38 130-167 268-307 (482)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.6e-23 Score=199.35 Aligned_cols=171 Identities=22% Similarity=0.348 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCCCcccccccCCccccCCCCCCE
Q 028394 28 LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLES 107 (209)
Q Consensus 28 ~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~ 107 (209)
.++|++||++||+++.+|...+.+|+. ..+||.|.||+|+. .++|+.|+|+++++.... +..+..+++|+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~-----~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKI-----SSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccC-----ChHHhCCCCCCE
Confidence 558999999999999877777889964 67899999999986 579999999998765221 122334444444
Q ss_pred EEccCceeccccCCCcch-------------------hcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394 108 LYLIGNNIAGCVENEGLD-------------------TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 108 L~Ls~N~l~g~ip~~~~~-------------------~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 168 (209)
|+|++|.++|.+|...+. ..+.+++|++|+|++|++++.+|..++++++|++|++++|.++
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 444444444444433000 0234667777777777777788888888888888888888888
Q ss_pred cccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhhh
Q 028394 169 GSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLR 208 (209)
Q Consensus 169 G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~~ 208 (209)
+.+|..++++++|.. ..+.+|.+++.+|..++.++++.+
T Consensus 178 ~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 178 GKIPNSLTNLTSLEF-LTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCChhhhhCcCCCe-eeccCCCCcCcCChHHcCcCCccE
Confidence 888888888888775 777888888888888887776643
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=170.19 Aligned_cols=143 Identities=29% Similarity=0.348 Sum_probs=118.0
Q ss_pred CCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCccccceEEcCC--C--CcEEEEEcCCCCCCcccccccCCcccc
Q 028394 25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDT--T--GRVIKLDLRDTRNWESAEWYMNASLFT 100 (209)
Q Consensus 25 ~~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~W~gv~C~~~--~--~~v~~L~L~~~~l~~~~~~~~~~~~~~ 100 (209)
..+.+.|.+||+++|+.+..+. ..+|.++++....|.|.||.|... . .+|+.|+|+++.+.. .+ +..+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g--~i---p~~i~ 439 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG--FI---PNDIS 439 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccc--cC---CHHHh
Confidence 4566789999999999986543 247954222222237999999531 1 259999999998862 21 44588
Q ss_pred CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
.+++|+.|+|++|.++|.+|.. ++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.+|..++.+
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 8999999999999999999998 9999999999999999999999999999999999999999999999988764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=2.6e-14 Score=136.57 Aligned_cols=103 Identities=27% Similarity=0.306 Sum_probs=58.9
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
++.+++|++|++++|.+.+.+|.. ++++++|++|++++|++++.+|..++++++|++|+|++|+++|.+|..++++
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred HhcCCCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 455666666666666666666655 5556666666666666655555555555555555555555555555555555
Q ss_pred CCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 179 STLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++|.. ..+.+|.+++.+|..+++++++
T Consensus 236 ~~L~~-L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 236 TSLNH-LDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred CCCCE-EECcCceeccccChhHhCCCCC
Confidence 55543 4444555555555555444433
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=1.6e-13 Score=125.49 Aligned_cols=95 Identities=24% Similarity=0.286 Sum_probs=90.0
Q ss_pred CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP 183 (209)
Q Consensus 104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~ 183 (209)
.++.|+|++|.++|.+|.. ++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|.+++++.+|..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 4788999999999999998 999999999999999999999999999999999999999999999999999999886
Q ss_pred CCccCCCCCchhhHHHHHHH
Q 028394 184 CPIFCGSYFTEQLEVLIRDL 203 (209)
Q Consensus 184 ~~~~~~n~~~~~~p~~~~~L 203 (209)
..+.+|.++|.+|..++.+
T Consensus 495 -L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 495 -LNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred -EECcCCcccccCChHHhhc
Confidence 8899999999999998764
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=8.6e-13 Score=100.83 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
..++|.|.|++|.++.++ +.+..+.+|+.|++++|.+. .+|.. ++.+++|+.|+++-|++. .+|..||
T Consensus 32 ~s~ITrLtLSHNKl~~vp------pnia~l~nlevln~~nnqie-~lp~~----issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVP------PNIAELKNLEVLNLSNNQIE-ELPTS----ISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCceeecC------CcHHHhhhhhhhhcccchhh-hcChh----hhhchhhhheecchhhhh-cCccccC
Confidence 357888888888876432 23555666666666666665 56665 666666666666666665 5566666
Q ss_pred CCCCCCEEeccCCccc-cccCCCCcccC
Q 028394 153 GLSSLRNLSLIGNRLI-GSIDIKGKYAS 179 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~-G~iP~~~~~l~ 179 (209)
.++.|+.|||.+|+++ ..+|..+.+++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHH
Confidence 6666666666666554 23344333333
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=2.4e-11 Score=103.29 Aligned_cols=112 Identities=23% Similarity=0.231 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCCCcccc------------------cccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEE
Q 028394 75 RVIKLDLRDTRNWESAE------------------WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFL 136 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~------------------~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L 136 (209)
-|+.++++.|++.+++. +.+.+..+..+++|..|+|++|.+. .+|.+ ++.+..|+.|
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e----~~~lv~Lq~L 463 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE----MGSLVRLQTL 463 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh----hhhhhhhhee
Confidence 48999999998754432 1344566788999999999999998 79998 9999999999
Q ss_pred ecccCCCC----------------------Ccchhh-hcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394 137 YLDYNHFN----------------------NSIFSS-LGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 137 ~Ls~N~l~----------------------g~iP~~-l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~ 193 (209)
|++.|+|. |.+|+. +++|.+|+.|||.+|.+. .||+.+|+++++.. ..+.+|+|+
T Consensus 464 nlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h-LeL~gNpfr 541 (565)
T KOG0472|consen 464 NLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH-LELDGNPFR 541 (565)
T ss_pred cccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE-EEecCCccC
Confidence 99999886 233433 778899999999999998 89999999999986 889999999
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=1.5e-10 Score=74.13 Aligned_cols=61 Identities=33% Similarity=0.417 Sum_probs=52.2
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcc
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 167 (209)
++|++|++++|+++ .+|+. .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~-~i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999998 55643 278899999999999999977777899999999999999975
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=1.7e-11 Score=93.74 Aligned_cols=120 Identities=20% Similarity=0.179 Sum_probs=79.5
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~ 152 (209)
.++..|++.+|+++.++ ..+++++.|+.|+++-|++. .+|.. |+.++.|+.|||.+|+++. .+|..|.
T Consensus 56 ~nlevln~~nnqie~lp------~~issl~klr~lnvgmnrl~-~lprg----fgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELP------TSISSLPKLRILNVGMNRLN-ILPRG----FGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred hhhhhhhcccchhhhcC------hhhhhchhhhheecchhhhh-cCccc----cCCCchhhhhhccccccccccCCcchh
Confidence 35667888888877553 34667778888888888776 66776 7888888888888777754 4666666
Q ss_pred CCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
.++.|+-|+|++|.|. -+|..++++++|.- ..+-.|.+ =.+|+.+++|.++.
T Consensus 125 ~m~tlralyl~dndfe-~lp~dvg~lt~lqi-l~lrdndl-l~lpkeig~lt~lr 176 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFE-ILPPDVGKLTNLQI-LSLRDNDL-LSLPKEIGDLTRLR 176 (264)
T ss_pred HHHHHHHHHhcCCCcc-cCChhhhhhcceeE-EeeccCch-hhCcHHHHHHHHHH
Confidence 6666777777777776 56777777766542 22223322 24566666666553
No 9
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.95 E-value=1.2e-09 Score=65.07 Aligned_cols=40 Identities=35% Similarity=0.721 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCCCCC-CCCCccccceEEc
Q 028394 29 EQERYALLQLRHFFN-DDQCLQNCWVDDEN-YSDCCQWERVECN 70 (209)
Q Consensus 29 ~~~~~aL~~~~~~~~-~~~~~l~~W~~~~~-~~~~C~W~gv~C~ 70 (209)
++|++||++||.++. ++...+.+|+. . ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 579999999999998 46678999964 2 2799999999995
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=5.4e-09 Score=80.96 Aligned_cols=103 Identities=27% Similarity=0.298 Sum_probs=36.8
Q ss_pred cEEEEEcCCCCCCcccccccCCcccc-CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh-c
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-G 152 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l-~ 152 (209)
+.+.|+|.++.++.+.. ++ .+.+|+.|++++|.++ .++. +..++.|++|++++|+++ .+++.+ .
T Consensus 20 ~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~-~l~~-----l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQIT-KLEG-----LPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ----------------S---------TT-TT--EEE-TTS--S---TT---------TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccccc-------hhhhhcCCCEEECCCCCCc-cccC-----ccChhhhhhcccCCCCCC-ccccchHH
Confidence 57889999999876543 33 4788999999999998 4553 788999999999999998 454444 4
Q ss_pred CCCCCCEEeccCCccccccCCCCc---ccCCCCCCCccCCCCCch
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGK---YASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~---~l~~l~~~~~~~~n~~~~ 194 (209)
.+++|++|++++|++.. + .++. .+.+|.. ..+.+|++..
T Consensus 86 ~lp~L~~L~L~~N~I~~-l-~~l~~L~~l~~L~~-L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISD-L-NELEPLSSLPKLRV-LSLEGNPVCE 127 (175)
T ss_dssp H-TT--EEE-TTS---S-C-CCCGGGGG-TT--E-EE-TT-GGGG
T ss_pred hCCcCCEEECcCCcCCC-h-HHhHHHHcCCCcce-eeccCCcccc
Confidence 68999999999999974 2 2233 3444443 5667777764
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.68 E-value=3.1e-09 Score=95.21 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=53.7
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcc-ccccCCCCc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL-IGSIDIKGK 176 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l-~G~iP~~~~ 176 (209)
.+.+|+.|-+||||+|++. .+|+. +..+..|++|+|++|.+.-.--..+..+++|++|.+++.+= .-.||.++-
T Consensus 145 lfinLtDLLfLDLS~NrLe-~LPPQ----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLE-MLPPQ----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred HHHhhHhHhhhccccchhh-hcCHH----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 3444555555555555554 34444 45555555555555544321111222334444444443321 234677776
Q ss_pred ccCCCCCCCccCCCCCchhhHHHHHHHHhhhhC
Q 028394 177 YASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV 209 (209)
Q Consensus 177 ~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~~~ 209 (209)
.+.+|-. .+++.|++. .+|+++-+|.++.|+
T Consensus 220 ~l~NL~d-vDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 220 DLHNLRD-VDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred hhhhhhh-ccccccCCC-cchHHHhhhhhhhee
Confidence 6666653 566666554 577777777776653
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=2.9e-08 Score=63.38 Aligned_cols=60 Identities=30% Similarity=0.442 Sum_probs=51.7
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF 143 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l 143 (209)
+++.|++++|.+..++ ...|..+++|++|++++|.++..-|.. |..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~-----~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIP-----PDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEEC-----TTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccC-----HHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence 5789999999888554 467889999999999999998655555 89999999999999985
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.67 E-value=3.5e-09 Score=94.86 Aligned_cols=123 Identities=23% Similarity=0.182 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.++.|||+.|.+.+.+ ..+..-+++-+|+||+|++. +||.. -+-+++.|-.||||+|++. .+|+.+..+
T Consensus 104 dLt~lDLShNqL~EvP------~~LE~AKn~iVLNLS~N~Ie-tIPn~---lfinLtDLLfLDLS~NrLe-~LPPQ~RRL 172 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVP------TNLEYAKNSIVLNLSYNNIE-TIPNS---LFINLTDLLFLDLSNNRLE-MLPPQIRRL 172 (1255)
T ss_pred cceeeecchhhhhhcc------hhhhhhcCcEEEEcccCccc-cCCch---HHHhhHhHhhhccccchhh-hcCHHHHHH
Confidence 4566666666665432 23444556666666666665 56654 2455666666777777766 566666666
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc-hhhHHHHHHHHhhhhC
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT-EQLEVLIRDLARFLRV 209 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~-~~~p~~~~~L~~~~~~ 209 (209)
..|++|+|++|.+.-.--..+-.+++|.. ...++.+.+ ..+|.++..|.++-+|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v-Lhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSV-LHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhh-hhcccccchhhcCCCchhhhhhhhhc
Confidence 66777777766654221122222333332 334444444 5678788777777654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.67 E-value=2.6e-08 Score=92.79 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=82.4
Q ss_pred cEEEEEcCCCCCCccccc-------ccCCccccC----CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCC
Q 028394 75 RVIKLDLRDTRNWESAEW-------YMNASLFTP----FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF 143 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~-------~~~~~~~~~----l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l 143 (209)
.++.|+|++|.+..++.. .+....+.. ..+|+.|++++|.+++ +|.. . ++|+.|++++|++
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l----~---s~L~~LdLS~N~L 414 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL----P---SELKELMVSGNRL 414 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc----c---cCCCEEEccCCcC
Confidence 577888888887755431 000001111 2367788888888873 5643 2 5688888888888
Q ss_pred CCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 144 NNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 144 ~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
+ .+|... .+|+.|++++|+++ .||..++++.++.. ..+++|++++.++..+.++..
T Consensus 415 s-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~-LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 415 T-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETT-VNLEGNPLSERTLQALREITS 470 (788)
T ss_pred C-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCe-EECCCCCCCchHHHHHHHHhc
Confidence 7 467543 46788899999998 79999998888874 888999999999888866543
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.65 E-value=1.1e-08 Score=87.35 Aligned_cols=93 Identities=24% Similarity=0.236 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc--------------------chhcCCCCCC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG--------------------LDTLSRLNNL 133 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~--------------------~~~~~~l~~L 133 (209)
.+++.|+|++|-+.++ |..++.+..|+.|++|.|+|. .+|.-. +.++.+|.+|
T Consensus 435 ~kLt~L~L~NN~Ln~L------P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDL------PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred hcceeeecccchhhhc------chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 3567777777766544 335677888999999999886 455421 3458899999
Q ss_pred cEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176 (209)
Q Consensus 134 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~ 176 (209)
.+|||.+|.+. .+|+.+|+|++|++|++++|.|+ .|....
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~i 547 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQI 547 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHHHH
Confidence 99999999998 89999999999999999999998 676443
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.64 E-value=2.4e-08 Score=88.82 Aligned_cols=78 Identities=22% Similarity=0.124 Sum_probs=46.1
Q ss_pred CCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 128 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
..|.++++|+|+.|+++..--.++-++++|+.|+|++|.++.--++.+....+|.. ..+++|.++.--++.+..|.++
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~-LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE-LDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee-EeccccccccCChhHHHHHHHh
Confidence 33455556666666665444445556666666666666666666666666666553 6666666665555555555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.61 E-value=3.2e-07 Score=85.70 Aligned_cols=42 Identities=7% Similarity=-0.042 Sum_probs=31.1
Q ss_pred hhccCCCCcHHHHHHHHHHHhhCCCCCCCCC----CCCCCCCCCCCcccc
Q 028394 20 KGWWSEGCLEQERYALLQLRHFFNDDQCLQN----CWVDDENYSDCCQWE 65 (209)
Q Consensus 20 ~~~~~~~~~~~~~~aL~~~~~~~~~~~~~l~----~W~~~~~~~~~C~W~ 65 (209)
.++..++..++|...++++.+.+..|. ... .|.+ ..++|.-.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~---~~~fc~~~ 98 (754)
T PRK15370 53 LCHPPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGG---ADQYCILS 98 (754)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCC---CCcccccC
Confidence 344567888999999999999998775 333 4876 67788543
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=7.8e-08 Score=74.51 Aligned_cols=84 Identities=30% Similarity=0.408 Sum_probs=40.8
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcc-hhhh
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSI-FSSL 151 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~i-P~~l 151 (209)
.+++.|+|++|.+..+.. +..+++|+.|++++|.++ .+++. + ..+++|++|++++|++...- =..+
T Consensus 42 ~~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~-~i~~~----l~~~lp~L~~L~L~~N~I~~l~~l~~L 109 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRIS-SISEG----LDKNLPNLQELYLSNNKISDLNELEPL 109 (175)
T ss_dssp TT--EEE-TTS--S--TT-----------TT--EEE--SS----S-CHH----HHHH-TT--EEE-TTS---SCCCCGGG
T ss_pred cCCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCC-ccccc----hHHhCCcCCEEECcCCcCCChHHhHHH
Confidence 478999999999986643 667999999999999998 45433 4 36899999999999997421 1457
Q ss_pred cCCCCCCEEeccCCcccc
Q 028394 152 GGLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 152 ~~l~~L~~L~L~~N~l~G 169 (209)
..+++|++|+|.+|.++.
T Consensus 110 ~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp GG-TT--EEE-TT-GGGG
T ss_pred HcCCCcceeeccCCcccc
Confidence 789999999999999973
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.50 E-value=1.4e-07 Score=56.28 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=26.1
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 168 (209)
++|++|++++|+++ .+|+.+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 56666777777777777777776
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.46 E-value=2.5e-07 Score=90.45 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.++.|++.++.+..+. ..+..+++|+.|+|+++..-+.+|. ++.+++|++|+|++|.....+|..++++
T Consensus 612 ~L~~L~L~~s~l~~L~------~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLW------DGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcEEECcCccccccc------cccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence 3445555555444321 2345678888888887765557774 7788888888888887767888888888
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
++|+.|++++|..-+.+|..+ ++++|.. ..+.+|...+.+|
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~-L~Lsgc~~L~~~p 721 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYR-LNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCE-EeCCCCCCccccc
Confidence 888888888876666788765 4555543 3344443333333
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.44 E-value=1.1e-07 Score=88.65 Aligned_cols=69 Identities=23% Similarity=0.184 Sum_probs=59.7
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST 180 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~ 180 (209)
++|+.|++++|.+++ +|.. . .+|+.|++++|+++ .+|..++++++|+.|+|++|+|+|.+|..+.++++
T Consensus 402 s~L~~LdLS~N~Lss-IP~l----~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML----P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc----h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 579999999999984 7764 3 46788999999998 89999999999999999999999999887755543
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.43 E-value=6.4e-08 Score=86.15 Aligned_cols=93 Identities=23% Similarity=0.186 Sum_probs=68.3
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~ 176 (209)
..|..+.+++.|+|..|+++..-... +.+|++|+.||||+|.+...-++.|...++|++|+|++|+++.-=|..+.
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn~g~----lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVNEGW----LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cceeeecccceeecccchhhhhhccc----ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 34666778888888888887332222 77888899999999998888888888888999999999998844444555
Q ss_pred ccCCCCCCCccCCCCCch
Q 028394 177 YASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 177 ~l~~l~~~~~~~~n~~~~ 194 (209)
-++.|.. ..++.|.+.-
T Consensus 339 ~L~~Le~-LnLs~Nsi~~ 355 (873)
T KOG4194|consen 339 VLSQLEE-LNLSHNSIDH 355 (873)
T ss_pred HHHHhhh-hcccccchHH
Confidence 5666654 6666666653
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.38 E-value=9.7e-08 Score=79.86 Aligned_cols=68 Identities=28% Similarity=0.292 Sum_probs=29.5
Q ss_pred CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----chhhhcCCCCCCEEeccCCcccc
Q 028394 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~G 169 (209)
+++|++|++++|.+++......+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 445555555555554311000000133344555555555555432 22233444555555555555543
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.37 E-value=4.7e-08 Score=90.61 Aligned_cols=104 Identities=24% Similarity=0.222 Sum_probs=78.6
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+|++|++.+++ .+.+.++..|+.|+||+|+++ .+|.. +.++..|++|...+|++. ..| .+..
T Consensus 383 ~hLKVLhLsyNrL~~fp-----as~~~kle~LeeL~LSGNkL~-~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFP-----ASKLRKLEELEELNLSGNKLT-TLPDT----VANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred cceeeeeecccccccCC-----HHHHhchHHhHHHhcccchhh-hhhHH----HHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 58889999999887543 456788899999999999998 78877 888888888888888887 777 6788
Q ss_pred CCCCCEEeccCCccc-cccCCCCcccCCCCCCCccCCCC
Q 028394 154 LSSLRNLSLIGNRLI-GSIDIKGKYASTLFPCPIFCGSY 191 (209)
Q Consensus 154 l~~L~~L~L~~N~l~-G~iP~~~~~l~~l~~~~~~~~n~ 191 (209)
+++|+.+|++.|+++ +.+|...- ..+|.+ ++++||.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p-~p~Lky-LdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALP-SPNLKY-LDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCC-Ccccce-eeccCCc
Confidence 888888898888886 33333221 144443 5566664
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.34 E-value=2.3e-07 Score=77.57 Aligned_cols=91 Identities=22% Similarity=0.163 Sum_probs=49.7
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCccccc----cCCC
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS----IDIK 174 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G~----iP~~ 174 (209)
++|+.|++++|.+++..+......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 5666666666666643222111124555667777777777764 2333445556777777777776533 2333
Q ss_pred CcccCCCCCCCccCCCCCch
Q 028394 175 GKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 175 ~~~l~~l~~~~~~~~n~~~~ 194 (209)
+.++.+|.. ..+++|.+++
T Consensus 217 ~~~~~~L~~-L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEV-LNLGDNNLTD 235 (319)
T ss_pred hcccCCCCE-EecCCCcCch
Confidence 344444543 5566666665
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.29 E-value=1.8e-06 Score=80.78 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=52.8
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.++.|+|++|.++.++. . + .++|+.|++++|+|+ .+|.. +. ..|+.|+|++|+++ .+|..+.
T Consensus 200 ~L~~L~Ls~N~LtsLP~-----~-l--~~nL~~L~Ls~N~Lt-sLP~~----l~--~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 200 QITTLILDNNELKSLPE-----N-L--QGNIKTLYANSNQLT-SIPAT----LP--DTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred CCcEEEecCCCCCcCCh-----h-h--ccCCCEEECCCCccc-cCChh----hh--ccccEEECcCCccC-cCChhHh--
Confidence 45566666666554322 1 1 236677777777776 45544 32 35666666666665 5555543
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~ 193 (209)
++|+.|++++|+++ .+|..+. .+|. ...+++|.++
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~-~L~Ls~N~Lt 296 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENLP--EELR-YLSVYDNSIR 296 (754)
T ss_pred CCCCEEECcCCccC-ccccccC--CCCc-EEECCCCccc
Confidence 35666666666666 4565443 1232 2344455554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=5.1e-07 Score=78.27 Aligned_cols=116 Identities=26% Similarity=0.310 Sum_probs=81.5
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCC-CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.++.+++.++.+..+.+ ....+. +|+.|++++|.+. .+|.. +..++.|+.|++++|+++ .+|...+.
T Consensus 117 ~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~~N~i~-~l~~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~ 184 (394)
T COG4886 117 NLTSLDLDNNNITDIPP------LIGLLKSNLKELDLSDNKIE-SLPSP----LRNLPNLKNLDLSFNDLS-DLPKLLSN 184 (394)
T ss_pred ceeEEecCCcccccCcc------ccccchhhcccccccccchh-hhhhh----hhccccccccccCCchhh-hhhhhhhh
Confidence 57777888877765543 233443 8899999999987 66655 888999999999999998 77777778
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
++.|+.|++++|+++ .||..++....+.. ..+.+|. .-+++..++++++
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~-l~~~~N~-~~~~~~~~~~~~~ 233 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPPEIELLSALEE-LDLSNNS-IIELLSSLSNLKN 233 (394)
T ss_pred hhhhhheeccCCccc-cCchhhhhhhhhhh-hhhcCCc-ceecchhhhhccc
Confidence 888999999999998 78887655555553 4444443 2333444444443
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=9.4e-07 Score=52.68 Aligned_cols=40 Identities=40% Similarity=0.435 Sum_probs=33.3
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcch
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF 148 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP 148 (209)
++|++|++++|+++ .+|+. +++|++|++|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~----l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPE----LSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGH----GTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCch----HhCCCCCCEEEecCCCCC-CCc
Confidence 47899999999999 68877 999999999999999998 444
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.24 E-value=1.5e-07 Score=87.43 Aligned_cols=118 Identities=22% Similarity=0.198 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
++.+||+++|.+...+ ..+..+.+|+.|+++.|.+. ..|.+ .+++.+|+++.|..|++. .+|.++..+
T Consensus 46 ~L~~l~lsnn~~~~fp------~~it~l~~L~~ln~s~n~i~-~vp~s----~~~~~~l~~lnL~~n~l~-~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFP------IQITLLSHLRQLNLSRNYIR-SVPSS----CSNMRNLQYLNLKNNRLQ-SLPASISEL 113 (1081)
T ss_pred eeEEeeccccccccCC------chhhhHHHHhhcccchhhHh-hCchh----hhhhhcchhheeccchhh-cCchhHHhh
Confidence 4889999999886543 34777899999999999998 67877 899999999999999998 899999999
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCC------------------CCccCCCCCchhhHHHHHHHHh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFP------------------CPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~------------------~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
.+|++|++++|+|. .+|.-+..++.+.. ...+..|.+.+.++..+..++.
T Consensus 114 knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence 99999999999996 88887766554322 1234455555666666666655
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.24 E-value=1.6e-06 Score=85.02 Aligned_cols=92 Identities=17% Similarity=0.088 Sum_probs=74.2
Q ss_pred CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCC
Q 028394 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTL 181 (209)
Q Consensus 102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l 181 (209)
..+|+.|++++|.+. .+|.. +..+++|++|+|+++...+.+|. ++.+++|+.|+|++|..-..+|.+++++.+|
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDG----VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccCCcEEECcCcccc-ccccc----cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 578899999999887 57776 88899999999998876667875 7888999999999988778999999999888
Q ss_pred CCCCccCCCCCchhhHHHH
Q 028394 182 FPCPIFCGSYFTEQLEVLI 200 (209)
Q Consensus 182 ~~~~~~~~n~~~~~~p~~~ 200 (209)
.. ..+.++..-+.+|..+
T Consensus 684 ~~-L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 684 ED-LDMSRCENLEILPTGI 701 (1153)
T ss_pred CE-EeCCCCCCcCccCCcC
Confidence 75 6666665556666544
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.23 E-value=6.3e-08 Score=82.52 Aligned_cols=98 Identities=22% Similarity=0.211 Sum_probs=66.6
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEeccc-CCCCCcchhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~-N~l~g~iP~~l~ 152 (209)
...+.|+|..|.+++++ +..|..+++|+.||||+|.++-.-|.. |.++++|.+|-+.+ |+++...-..|+
T Consensus 67 ~~tveirLdqN~I~~iP-----~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIP-----PGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccCCcccCC-----hhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 35788999999988654 567899999999999999998555555 77777666654444 777733334566
Q ss_pred CCCCCCEEeccCCccccccCCCCcccCC
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYAST 180 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~ 180 (209)
+|.+|+.|.+.-|++.-.....+..+.+
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 6666666666666665444444444443
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=6e-08 Score=71.75 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=87.1
Q ss_pred CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
.-+++.++|++|.+..++ ...-..++.++.|++++|.++ .+|.+ +..++.|+.|+++.|.|. ..|..+.
T Consensus 52 ~~el~~i~ls~N~fk~fp-----~kft~kf~t~t~lNl~~neis-dvPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFP-----KKFTIKFPTATTLNLANNEIS-DVPEE----LAAMPALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhhhCC-----HHHhhccchhhhhhcchhhhh-hchHH----HhhhHHhhhcccccCccc-cchHHHH
Confidence 458999999999987543 333445678899999999998 78988 999999999999999998 6788888
Q ss_pred CCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIR 201 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~ 201 (209)
.+.+|-.|+..+|... +||..+.+.+. .....+.++.+.+.-+.-..
T Consensus 121 ~L~~l~~Lds~~na~~-eid~dl~~s~~-~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 121 PLIKLDMLDSPENARA-EIDVDLFYSSL-PALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred HHHhHHHhcCCCCccc-cCcHHHhcccc-HHHHHhcCCcccccCccccc
Confidence 8999999999999887 78876433222 22234556666655444433
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.18 E-value=1.1e-07 Score=84.31 Aligned_cols=116 Identities=23% Similarity=0.250 Sum_probs=63.4
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.+|.+||+.|+++.++. .+..| -|+.|-+++|+++ .+|++ ++.+..|..||.+.|++. .+|..++.+
T Consensus 122 ~lt~l~ls~NqlS~lp~------~lC~l-pLkvli~sNNkl~-~lp~~----ig~~~tl~~ld~s~nei~-slpsql~~l 188 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPD------GLCDL-PLKVLIVSNNKLT-SLPEE----IGLLPTLAHLDVSKNEIQ-SLPSQLGYL 188 (722)
T ss_pred HHHHhhhccchhhcCCh------hhhcC-cceeEEEecCccc-cCCcc----cccchhHHHhhhhhhhhh-hchHHhhhH
Confidence 45667777777664432 23322 3666667777765 56666 666666666666666665 556666666
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
.+|+.|.+..|++. .+|.++..| .|.. +++++|+++ .||..|.+++.|.
T Consensus 189 ~slr~l~vrRn~l~-~lp~El~~L-pLi~-lDfScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLE-DLPEELCSL-PLIR-LDFSCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred HHHHHHHHhhhhhh-hCCHHHhCC-ceee-eecccCcee-ecchhhhhhhhhe
Confidence 55555555555554 455554422 2222 444444332 3555555555543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=9.1e-07 Score=73.47 Aligned_cols=54 Identities=28% Similarity=0.265 Sum_probs=31.7
Q ss_pred hcCCCCCCEEeccCCccccccC--CCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 151 LGGLSSLRNLSLIGNRLIGSID--IKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 151 l~~l~~L~~L~L~~N~l~G~iP--~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++.+-+|.+||+.+|++.. +. ..+|++.-|.. ..+-+|.+.+.+.-.-..|++|
T Consensus 370 L~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~-l~L~~NPl~~~vdYRTKVLa~F 425 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLET-LRLTGNPLAGSVDYRTKVLARF 425 (490)
T ss_pred hHhhhhheeccccccchhh-HHHhcccccccHHHH-HhhcCCCccccchHHHHHHHHH
Confidence 4556677777777777752 22 24555555543 5566777776655555555544
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.09 E-value=1.2e-06 Score=74.84 Aligned_cols=83 Identities=24% Similarity=0.253 Sum_probs=71.0
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~ 176 (209)
..|..|++|+.|+|++|.+++.-+.. |.++..+++|.|..|++.-.--..|.++..|+.|+|.+|+++---|..+.
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 34888999999999999999765655 88999999999999999855556788999999999999999988888887
Q ss_pred ccCCCCC
Q 028394 177 YASTLFP 183 (209)
Q Consensus 177 ~l~~l~~ 183 (209)
.+.++..
T Consensus 344 ~~~~l~~ 350 (498)
T KOG4237|consen 344 TLFSLST 350 (498)
T ss_pred ccceeee
Confidence 7766543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.93 E-value=1.3e-06 Score=77.75 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=77.0
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
-+..+-+++|+++.++ ..++.+.+|..||.+.|.+. .+|.. ++.+.+|+.|.+..|++. .+|+.++.|
T Consensus 144 pLkvli~sNNkl~~lp------~~ig~~~tl~~ld~s~nei~-slpsq----l~~l~slr~l~vrRn~l~-~lp~El~~L 211 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLP------EEIGLLPTLAHLDVSKNEIQ-SLPSQ----LGYLTSLRDLNVRRNHLE-DLPEELCSL 211 (722)
T ss_pred cceeEEEecCccccCC------cccccchhHHHhhhhhhhhh-hchHH----hhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence 4667777888877543 34566778888888888887 56776 788888888888888877 667777744
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ 195 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~ 195 (209)
.|..||++.|+++ .||..+-+|+.|.. +-+.+|.+...
T Consensus 212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~-l~LenNPLqSP 249 (722)
T KOG0532|consen 212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQV-LQLENNPLQSP 249 (722)
T ss_pred -ceeeeecccCcee-ecchhhhhhhhhee-eeeccCCCCCC
Confidence 3777888888887 78888888877764 66667776643
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=3.2e-06 Score=70.31 Aligned_cols=102 Identities=22% Similarity=0.166 Sum_probs=54.4
Q ss_pred EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (209)
Q Consensus 76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 155 (209)
++.+||++|.++.+.. ...-++.++.|++|+|.+. .+-. +..+++|+.||||+|.++ .+-.+-..+-
T Consensus 286 LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~N~i~-~v~n-----La~L~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDE------SVKLAPKLRRLILSQNRIR-TVQN-----LAELPQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred hhhccccccchhhhhh------hhhhccceeEEecccccee-eehh-----hhhcccceEeecccchhH-hhhhhHhhhc
Confidence 4556666665543322 2333556666666666665 2222 555666666666666665 3433334555
Q ss_pred CCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394 156 SLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 156 ~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~ 193 (209)
+.+.|.|+.|.+.. -..++.+-+|. +.++.+|++.
T Consensus 353 NIKtL~La~N~iE~--LSGL~KLYSLv-nLDl~~N~Ie 387 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET--LSGLRKLYSLV-NLDLSSNQIE 387 (490)
T ss_pred CEeeeehhhhhHhh--hhhhHhhhhhe-eccccccchh
Confidence 56666666666541 12233344444 3666676654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.81 E-value=5.9e-06 Score=78.54 Aligned_cols=83 Identities=24% Similarity=0.225 Sum_probs=69.4
Q ss_pred CccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCC
Q 028394 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (209)
Q Consensus 96 ~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~ 175 (209)
..+|..++.|++|||++|.=-+.+|.. ++.|-+|++|+++...++ .+|..++++.+|.+|++..+.....+|.-.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchh
Confidence 345778999999999988777789988 999999999999999998 889999999999999999888776776666
Q ss_pred cccCCCCC
Q 028394 176 KYASTLFP 183 (209)
Q Consensus 176 ~~l~~l~~ 183 (209)
..+.+|..
T Consensus 639 ~~L~~Lr~ 646 (889)
T KOG4658|consen 639 LELQSLRV 646 (889)
T ss_pred hhcccccE
Confidence 66777654
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.80 E-value=4.1e-06 Score=72.59 Aligned_cols=96 Identities=26% Similarity=0.244 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.+++++|.+..+. ..+..++.|+.|++++|.++ .+|.. .+.++.|+.|++++|+++ .+|...+.+
T Consensus 141 nL~~L~l~~N~i~~l~------~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~~~~L~~L~ls~N~i~-~l~~~~~~~ 208 (394)
T COG4886 141 NLKELDLSDNKIESLP------SPLRNLPNLKNLDLSFNDLS-DLPKL----LSNLSNLNNLDLSGNKIS-DLPPEIELL 208 (394)
T ss_pred hcccccccccchhhhh------hhhhccccccccccCCchhh-hhhhh----hhhhhhhhheeccCCccc-cCchhhhhh
Confidence 7889999999887552 23667899999999999998 67765 558889999999999998 788877677
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCC
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFP 183 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~ 183 (209)
..|+++.+++|+.. .+|..+.++.++..
T Consensus 209 ~~L~~l~~~~N~~~-~~~~~~~~~~~l~~ 236 (394)
T COG4886 209 SALEELDLSNNSII-ELLSSLSNLKNLSG 236 (394)
T ss_pred hhhhhhhhcCCcce-ecchhhhhcccccc
Confidence 77889999888643 46666666666654
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=6.9e-07 Score=66.23 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=73.8
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcchhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
.....++|++..+-.+.+. ...+....+|+..+|++|.|. .+|+. | .+++.++.+++++|+++ .+|..+.
T Consensus 27 kE~h~ldLssc~lm~i~da---vy~l~~~~el~~i~ls~N~fk-~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~A 97 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADA---VYMLSKGYELTKISLSDNGFK-KFPKK----FTIKFPTATTLNLANNEIS-DVPEELA 97 (177)
T ss_pred HHhhhcccccchhhHHHHH---HHHHhCCceEEEEecccchhh-hCCHH----Hhhccchhhhhhcchhhhh-hchHHHh
Confidence 3445667777655433221 112445678899999999998 56665 5 45568999999999998 8999999
Q ss_pred CCCCCCEEeccCCccccccCCCCcccCCCC
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLF 182 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~ 182 (209)
.++.|+.|++++|.|. ..|.-+..+.++.
T Consensus 98 am~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 9999999999999998 5676666665553
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.67 E-value=2e-05 Score=75.02 Aligned_cols=101 Identities=21% Similarity=0.144 Sum_probs=78.8
Q ss_pred CCCCCEEEccCce--eccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccC
Q 028394 102 FQQLESLYLIGNN--IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS 179 (209)
Q Consensus 102 l~~L~~L~Ls~N~--l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~ 179 (209)
.+.|+.|-+..|. +. .++.+ .|..++.|+.|||++|.=-+.+|..++++-+|++|++++..++ .+|..++++.
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~---ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGE---FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK 618 (889)
T ss_pred CCccceEEEeecchhhh-hcCHH---HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence 4578899998886 33 44443 2678999999999998877899999999999999999999999 8999999999
Q ss_pred CCCCCCccCCCCCchhhHHHHHHHHhhhh
Q 028394 180 TLFPCPIFCGSYFTEQLEVLIRDLARFLR 208 (209)
Q Consensus 180 ~l~~~~~~~~n~~~~~~p~~~~~L~~~~~ 208 (209)
.|.. ..+..+..-..+|..+..|.++.+
T Consensus 619 ~L~~-Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 619 KLIY-LNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hhhe-eccccccccccccchhhhcccccE
Confidence 8875 555555544455666665665543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=4.2e-05 Score=67.03 Aligned_cols=104 Identities=29% Similarity=0.232 Sum_probs=72.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
..+..+++.+|.+..+.. .+..+++|++|++++|.++...+ +..++.|+.|++++|.++ .++ .+..
T Consensus 95 ~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~-~~~-~~~~ 160 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLIS-DIS-GLES 160 (414)
T ss_pred cceeeeeccccchhhccc------chhhhhcchheeccccccccccc------hhhccchhhheeccCcch-hcc-CCcc
Confidence 567888899988876543 15668899999999999985433 678888999999999987 333 3556
Q ss_pred CCCCCEEeccCCccccccCCC-CcccCCCCCCCccCCCCCc
Q 028394 154 LSSLRNLSLIGNRLIGSIDIK-GKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~-~~~l~~l~~~~~~~~n~~~ 193 (209)
++.|+.+++++|+++. ++.. ...+..+.. ..+.+|...
T Consensus 161 l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~-l~l~~n~i~ 199 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVD-IENDELSELISLEE-LDLGGNSIR 199 (414)
T ss_pred chhhhcccCCcchhhh-hhhhhhhhccchHH-HhccCCchh
Confidence 8889999999999884 3332 344444442 344444433
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=4.1e-05 Score=63.66 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc-chhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~-iP~~l~ 152 (209)
.+|..+||.+|.++.+.++ ...+.++++|++|+|+.|.++..|-.. -..+.+|++|-|.+..+.-. .-..+.
T Consensus 71 ~~v~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence 4789999999998876654 456778999999999999998766543 23567888888887776532 334566
Q ss_pred CCCCCCEEeccCCccc
Q 028394 153 GLSSLRNLSLIGNRLI 168 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~ 168 (209)
.++.++.|+++.|.+.
T Consensus 144 ~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLR 159 (418)
T ss_pred cchhhhhhhhccchhh
Confidence 7788888888888543
No 44
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.12 E-value=0.0002 Score=35.91 Aligned_cols=19 Identities=42% Similarity=0.396 Sum_probs=9.4
Q ss_pred CCEEeccCCccccccCCCCc
Q 028394 157 LRNLSLIGNRLIGSIDIKGK 176 (209)
Q Consensus 157 L~~L~L~~N~l~G~iP~~~~ 176 (209)
|++||+++|+|+ .||.+++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4554433
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.10 E-value=4.9e-05 Score=69.77 Aligned_cols=101 Identities=23% Similarity=0.214 Sum_probs=53.2
Q ss_pred EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh-hcCC
Q 028394 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGGL 154 (209)
Q Consensus 76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~-l~~l 154 (209)
+..++.+.|.+..+. ..+.-++.++.|+|++|+++.. . . +..+++|++|||++|++. .+|.. ...+
T Consensus 166 L~~a~fsyN~L~~mD------~SLqll~ale~LnLshNk~~~v-~-~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMD------ESLQLLPALESLNLSHNKFTKV-D-N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred HhhhhcchhhHHhHH------HHHHHHHHhhhhccchhhhhhh-H-H----HHhcccccccccccchhc-cccccchhhh
Confidence 344555555554221 1233456677777777777632 1 2 666777777777777776 45542 1122
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~ 193 (209)
+|+.|.+.+|.++.- ..+.++.+|.. .+++.|-++
T Consensus 233 -~L~~L~lrnN~l~tL--~gie~LksL~~-LDlsyNll~ 267 (1096)
T KOG1859|consen 233 -KLQLLNLRNNALTTL--RGIENLKSLYG-LDLSYNLLS 267 (1096)
T ss_pred -hheeeeecccHHHhh--hhHHhhhhhhc-cchhHhhhh
Confidence 266666666665521 23444555443 555555444
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.04 E-value=0.00023 Score=35.70 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=11.0
Q ss_pred CcEEecccCCCCCcchhhhcC
Q 028394 133 LKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 133 L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
|++||+++|+++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455566666555 55555443
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.00092 Score=52.74 Aligned_cols=81 Identities=27% Similarity=0.363 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcchh--hh
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFS--SL 151 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~iP~--~l 151 (209)
....+||++|.+..+. .|..++.|..|.+.+|+++- |.+. + ..+++|+.|.|.+|++. .+-+ -+
T Consensus 43 ~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~-I~p~----L~~~~p~l~~L~LtnNsi~-~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITR-IDPD----LDTFLPNLKTLILTNNSIQ-ELGDLDPL 109 (233)
T ss_pred ccceecccccchhhcc-------cCCCccccceEEecCCccee-eccc----hhhhccccceEEecCcchh-hhhhcchh
Confidence 4567888888775433 26678888999999999884 4433 4 34567888889888875 2221 25
Q ss_pred cCCCCCCEEeccCCccc
Q 028394 152 GGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 152 ~~l~~L~~L~L~~N~l~ 168 (209)
..+++|++|.+-+|..+
T Consensus 110 a~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ccCCccceeeecCCchh
Confidence 67788888888888765
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00012 Score=63.49 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVE 120 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip 120 (209)
.+|+.|||+.|-+..+-.+ ......|++|+.|+|+.|.+.-.+.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred CcceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCcc
Confidence 4788999998877544332 2335568888999999888864443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.92 E-value=0.00065 Score=59.56 Aligned_cols=89 Identities=28% Similarity=0.283 Sum_probs=66.4
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|+.+++..|.+.+ |... +..+++|++|++++|+++..-+ +..++.|+.|++++|.++. ++. +..+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~----l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-~~~-~~~l 161 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENL----LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD-ISG-LESL 161 (414)
T ss_pred cccccceeeeeccccchhh-cccc----hhhhhcchheeccccccccccc--hhhccchhhheeccCcchh-ccC-Cccc
Confidence 6678999999999999984 4443 6789999999999999985433 5677889999999999983 333 3335
Q ss_pred CCCCCCCccCCCCCchhhH
Q 028394 179 STLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~~~p 197 (209)
..+.. ..+.+|.+...-+
T Consensus 162 ~~L~~-l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 162 KSLKL-LDLSYNRIVDIEN 179 (414)
T ss_pred hhhhc-ccCCcchhhhhhh
Confidence 55543 5666776664433
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.001 Score=54.08 Aligned_cols=64 Identities=30% Similarity=0.437 Sum_probs=38.0
Q ss_pred ccCCCCCCEEEccCc--eeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh---hcCCCCCCEEeccCCccc
Q 028394 99 FTPFQQLESLYLIGN--NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS---LGGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N--~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~L~~N~l~ 168 (209)
+..|++|+.|.+|.| +.++.++.- ..++++|++++++.|++.- +.. +..+.+|..|++.++.-+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 445667777777777 555555544 4555777777777777652 332 334455666666655544
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00048 Score=56.01 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=63.1
Q ss_pred CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccC--CCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc-
Q 028394 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN--HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA- 178 (209)
Q Consensus 102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l- 178 (209)
+..|+.+.+.+-.++ ++-. +..|++|+.|++|.| +.++.++.....+++|+++++++|+++ ++.++.-+
T Consensus 42 ~~~le~ls~~n~glt-t~~~-----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~ 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TLTN-----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLK 113 (260)
T ss_pred ccchhhhhhhcccee-eccc-----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhh
Confidence 445566666666665 2222 678889999999999 777777776777799999999999987 24444322
Q ss_pred --CCCC-----CCCccCCCCCchhhHHHHHHHHhh
Q 028394 179 --STLF-----PCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 179 --~~l~-----~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
.+|. .+..+..+....++...+..|+.+
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~L 148 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYL 148 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccc
Confidence 2222 122333444456777777776643
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.78 E-value=0.00019 Score=66.10 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=43.3
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.+..|||+.|.++... .+..+++|+.|||+.|.+. .+|.- ....+. |+.|.+.+|.++ .+ ..+.++
T Consensus 188 ale~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~-~vp~l---~~~gc~-L~~L~lrnN~l~-tL-~gie~L 253 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLR-HVPQL---SMVGCK-LQLLNLRNNALT-TL-RGIENL 253 (1096)
T ss_pred HhhhhccchhhhhhhH-------HHHhcccccccccccchhc-ccccc---chhhhh-heeeeecccHHH-hh-hhHHhh
Confidence 4555666666655332 2444666666666666665 44432 112232 666666666665 22 224566
Q ss_pred CCCCEEeccCCcccc
Q 028394 155 SSLRNLSLIGNRLIG 169 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G 169 (209)
.+|+.||+++|-+++
T Consensus 254 ksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhhccchhHhhhhc
Confidence 666666666666654
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.65 E-value=0.0025 Score=50.33 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=60.0
Q ss_pred EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (209)
Q Consensus 76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 155 (209)
=.+++|.+..+..+..+ =.-+.+...+||++|.+. .++. +..++.|.+|.|++|+++..-|.--.-++
T Consensus 21 e~e~~LR~lkip~ienl------g~~~d~~d~iDLtdNdl~-~l~~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p 88 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENL------GATLDQFDAIDLTDNDLR-KLDN-----LPHLPRLHTLLLNNNRITRIDPDLDTFLP 88 (233)
T ss_pred ccccccccccccchhhc------cccccccceecccccchh-hccc-----CCCccccceEEecCCcceeeccchhhhcc
Confidence 34567777766543321 011457788999999986 4554 88999999999999999965555445568
Q ss_pred CCCEEeccCCccc
Q 028394 156 SLRNLSLIGNRLI 168 (209)
Q Consensus 156 ~L~~L~L~~N~l~ 168 (209)
+|..|.|.+|++.
T Consensus 89 ~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 89 NLKTLILTNNSIQ 101 (233)
T ss_pred ccceEEecCcchh
Confidence 8999999999986
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00037 Score=57.63 Aligned_cols=85 Identities=32% Similarity=0.272 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh--hhc
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--SLG 152 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~--~l~ 152 (209)
.|..|+.-|.++.++. ...+++.|++|.||-|+++..-| +..+++|++|+|..|.+. .+.+ .+.
T Consensus 20 ~vkKLNcwg~~L~DIs-------ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~-sldEL~YLk 85 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-------ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIE-SLDELEYLK 85 (388)
T ss_pred HhhhhcccCCCccHHH-------HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccc-cHHHHHHHh
Confidence 4455555555554332 24457777888888887774322 677777888888877776 3332 356
Q ss_pred CCCCCCEEeccCCccccccCC
Q 028394 153 GLSSLRNLSLIGNRLIGSIDI 173 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~ 173 (209)
++++|+.|.|..|.-.|.-+.
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred cCchhhhHhhccCCcccccch
Confidence 777778888877777766554
No 55
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.10 E-value=0.0001 Score=59.40 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=70.4
Q ss_pred CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
..+|+.||++.|++..++. .|..++.+..|+++.|.+. .+|.. ++.+..+..+++..|+.+ ..|.+++
T Consensus 41 ~kr~tvld~~s~r~vn~~~------n~s~~t~~~rl~~sknq~~-~~~~d----~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGK------NFSILTRLVRLDLSKNQIK-FLPKD----AKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred cceeeeehhhhhHHHhhcc------chHHHHHHHHHhccHhhHh-hChhh----HHHHHHHHHHHhhccchh-hCCcccc
Confidence 4689999999988765443 3666888899999999887 67877 888888999999999987 8899999
Q ss_pred CCCCCCEEeccCCcccc
Q 028394 153 GLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G 169 (209)
..+.++++++-.|.|.-
T Consensus 109 k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccCCcchhhhccCcchH
Confidence 99999999998888763
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.011 Score=51.76 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhh---
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSS--- 150 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~--- 150 (209)
.+..|+|.+|... .. ......-+..|+.|||++|++- ..+. +...+.++.|+.|+++.+.++. .+|+.
T Consensus 223 sl~~L~L~~N~~~--~~---~~~~~~i~~~L~~LdLs~N~li-~~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 223 SLEVLYLEANEII--LI---KATSTKILQTLQELDLSNNNLI-DFDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred cHHHhhhhccccc--ce---ecchhhhhhHHhhccccCCccc-cccc--ccccccccchhhhhccccCcchhcCCCccch
Confidence 4666777777421 10 0112333667888888888775 2331 1125677788888888877764 23433
Q ss_pred --hcCCCCCCEEeccCCccc
Q 028394 151 --LGGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 151 --l~~l~~L~~L~L~~N~l~ 168 (209)
...+++|++|+++.|++.
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhcccccceeeecccCccc
Confidence 345678888888888875
No 57
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.96 E-value=0.017 Score=26.97 Aligned_cols=11 Identities=36% Similarity=0.461 Sum_probs=3.2
Q ss_pred CcEEecccCCC
Q 028394 133 LKFLYLDYNHF 143 (209)
Q Consensus 133 L~~L~Ls~N~l 143 (209)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33344444433
No 58
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.94 E-value=0.001 Score=53.80 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=79.3
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY 177 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~ 177 (209)
.+....+.+.||++.|++. .+-.. ++.++.|..||++.|++. .+|..++....++.+++..|..+ ..|.+.+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKN----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccc----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 3556788999999999986 34444 788899999999999997 88999999999999999999998 78999999
Q ss_pred cCCCCCCCccCCCCCchhhHHHHHHH
Q 028394 178 ASTLFPCPIFCGSYFTEQLEVLIRDL 203 (209)
Q Consensus 178 l~~l~~~~~~~~n~~~~~~p~~~~~L 203 (209)
+..+.. ...-++.|.....+.....
T Consensus 110 ~~~~k~-~e~k~~~~~~~~~~~v~~c 134 (326)
T KOG0473|consen 110 EPHPKK-NEQKKTEFFRKLFGFVWSC 134 (326)
T ss_pred cCCcch-hhhccCcchHHHHhHhhhh
Confidence 888765 5566777776665555443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.85 E-value=0.023 Score=47.12 Aligned_cols=69 Identities=22% Similarity=0.168 Sum_probs=47.2
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh-----h---------hcCCCCCCEEeccC
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-----S---------LGGLSSLRNLSLIG 164 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~-----~---------l~~l~~L~~L~L~~ 164 (209)
+-++++|+..+||.|.|....|+.--.-++.-+.|.+|.+++|.+. ++.. . ..+-|.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4567889999999998887777653333566788888888888874 2221 1 12346777887777
Q ss_pred Cccc
Q 028394 165 NRLI 168 (209)
Q Consensus 165 N~l~ 168 (209)
|+|.
T Consensus 167 NRle 170 (388)
T COG5238 167 NRLE 170 (388)
T ss_pred chhc
Confidence 7764
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.24 E-value=0.069 Score=46.88 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecccC-CCCCcchhhhc
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNNSIFSSLG 152 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N-~l~g~iP~~l~ 152 (209)
..+.|+++++.+.+++.+ -.+|+.|.+++ +.++ .+|.. + .++|++|++++| ++. .+|+
T Consensus 53 ~l~~L~Is~c~L~sLP~L---------P~sLtsL~Lsnc~nLt-sLP~~----L--P~nLe~L~Ls~Cs~L~-sLP~--- 112 (426)
T PRK15386 53 ASGRLYIKDCDIESLPVL---------PNELTEITIENCNNLT-TLPGS----I--PEGLEKLTVCHCPEIS-GLPE--- 112 (426)
T ss_pred CCCEEEeCCCCCcccCCC---------CCCCcEEEccCCCCcc-cCCch----h--hhhhhheEccCccccc-cccc---
Confidence 467888888877655321 13588888877 4453 56654 4 357899999988 444 5664
Q ss_pred CCCCCCEEeccCCcc--ccccCCCCcccC
Q 028394 153 GLSSLRNLSLIGNRL--IGSIDIKGKYAS 179 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l--~G~iP~~~~~l~ 179 (209)
+|+.|+++.|.. -+.+|.++..|.
T Consensus 113 ---sLe~L~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 113 ---SVRSLEIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred ---ccceEEeCCCCCcccccCcchHhhee
Confidence 366777776654 356777666554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.05 E-value=0.035 Score=51.97 Aligned_cols=88 Identities=20% Similarity=0.205 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc--chh--
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS--IFS-- 149 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~--iP~-- 149 (209)
.++..||+++.+++.+. .+++|++|+.|.+.+=.+.- .....++.+|++|+.||+|....... +..
T Consensus 173 pNL~sLDIS~TnI~nl~-------GIS~LknLq~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY 242 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNLS-------GISRLKNLQVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY 242 (699)
T ss_pred CccceeecCCCCccCcH-------HHhccccHHHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHH
Confidence 34555555555444321 23445555555444433321 00112356677777777777665432 121
Q ss_pred --hhcCCCCCCEEeccCCcccccc
Q 028394 150 --SLGGLSSLRNLSLIGNRLIGSI 171 (209)
Q Consensus 150 --~l~~l~~L~~L~L~~N~l~G~i 171 (209)
.-..||+|+.||.|++.+.+.+
T Consensus 243 lec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 243 LECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhcccCccccEEecCCcchhHHH
Confidence 1124677777777777766554
No 62
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.77 E-value=0.045 Score=28.17 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=7.3
Q ss_pred CCCcEEecccCCCC
Q 028394 131 NNLKFLYLDYNHFN 144 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~ 144 (209)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.77 E-value=0.045 Score=28.17 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=7.3
Q ss_pred CCCcEEecccCCCC
Q 028394 131 NNLKFLYLDYNHFN 144 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~ 144 (209)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.65 E-value=0.013 Score=49.73 Aligned_cols=93 Identities=22% Similarity=0.111 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh----h
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----S 150 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~----~ 150 (209)
.+..+.++.|.+..-+- ..-...+..+++|++|||..|-|+-.-....-..+..+++|+.|+++++.+...=-. .
T Consensus 186 ~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred ccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 56666777766542121 000123556788888888888775321110001155666777777777777542222 2
Q ss_pred h-cCCCCCCEEeccCCccc
Q 028394 151 L-GGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 151 l-~~l~~L~~L~L~~N~l~ 168 (209)
+ ...++|+.|.+.+|.++
T Consensus 265 l~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhccCCCCceeccCcchhH
Confidence 2 23567777777777765
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.45 E-value=0.07 Score=27.41 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=13.1
Q ss_pred CCCCCEEeccCCccccccCCC
Q 028394 154 LSSLRNLSLIGNRLIGSIDIK 174 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~ 174 (209)
+++|++|+|++|+++ .||..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777777777776 55654
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.45 E-value=0.07 Score=27.41 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=13.1
Q ss_pred CCCCCEEeccCCccccccCCC
Q 028394 154 LSSLRNLSLIGNRLIGSIDIK 174 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~ 174 (209)
+++|++|+|++|+++ .||..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777777777776 55654
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.76 E-value=0.069 Score=50.05 Aligned_cols=64 Identities=30% Similarity=0.411 Sum_probs=48.5
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhcCCCCCCEEeccCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~ 168 (209)
..++++|..||+|+.+++- + .. +++|++|+.|.+.+=.|.. ..=..+.+|++|+.||+|.....
T Consensus 169 c~sFpNL~sLDIS~TnI~n-l-~G----IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISN-L-SG----ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hhccCccceeecCCCCccC-c-HH----HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 4568999999999988872 3 22 8999999999888766652 22235678999999999977654
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.60 E-value=0.18 Score=44.34 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=37.3
Q ss_pred CcEEEEEcCC-CCCCcccccccCCccccCCCCCCEEEccCc-eeccccCCCcchhcCCCCCCcEEecccCCCC--Ccchh
Q 028394 74 GRVIKLDLRD-TRNWESAEWYMNASLFTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFN--NSIFS 149 (209)
Q Consensus 74 ~~v~~L~L~~-~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~--g~iP~ 149 (209)
..++.|++++ +.++.+. +.+ ..+|+.|++++| .+. .+|+. |+.|+++.|... +.+|.
T Consensus 72 ~sLtsL~Lsnc~nLtsLP------~~L--P~nLe~L~Ls~Cs~L~-sLP~s----------Le~L~L~~n~~~~L~~LPs 132 (426)
T PRK15386 72 NELTEITIENCNNLTTLP------GSI--PEGLEKLTVCHCPEIS-GLPES----------VRSLEIKGSATDSIKNVPN 132 (426)
T ss_pred CCCcEEEccCCCCcccCC------chh--hhhhhheEccCccccc-ccccc----------cceEEeCCCCCcccccCcc
Confidence 4588888876 3343322 112 247888888887 444 45543 666777766542 24554
Q ss_pred hhcCCCCCCEEecc
Q 028394 150 SLGGLSSLRNLSLI 163 (209)
Q Consensus 150 ~l~~l~~L~~L~L~ 163 (209)
. |+.|.+.
T Consensus 133 s------Lk~L~I~ 140 (426)
T PRK15386 133 G------LTSLSIN 140 (426)
T ss_pred h------Hhheecc
Confidence 3 5566654
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=0.066 Score=45.04 Aligned_cols=68 Identities=31% Similarity=0.268 Sum_probs=47.8
Q ss_pred CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccc
Q 028394 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGS 170 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~ 170 (209)
..++++.+||.+|.++.- .+++.-+.+|+.|++|+|+.|+++..|-..=..+.+|++|-|.+..+...
T Consensus 69 ~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~ 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT 136 (418)
T ss_pred HhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh
Confidence 367889999999998631 11122267899999999999999855433213566888888888777644
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.99 E-value=0.052 Score=46.26 Aligned_cols=91 Identities=22% Similarity=0.192 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc---chhcCCCCCCcEEecccCCCCC----c
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG---LDTLSRLNNLKFLYLDYNHFNN----S 146 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~~~~~l~~L~~L~Ls~N~l~g----~ 146 (209)
..+..+....|++..-+...+ ...|...+.|+.+.++.|.+. |... ...+..+++|+.|||..|.|+- .
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~-A~~~~~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATAL-AEAFQSHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred cceEEEEeeccccccccHHHH-HHHHHhccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 345555555555432211000 112333455566666665543 1110 1224555666666666666542 1
Q ss_pred chhhhcCCCCCCEEeccCCccc
Q 028394 147 IFSSLGGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 147 iP~~l~~l~~L~~L~L~~N~l~ 168 (209)
+-..+..+++|+.|++++..++
T Consensus 233 LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHhcccchheeecccccccc
Confidence 2233444555666666555543
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.81 E-value=0.036 Score=28.00 Aligned_cols=12 Identities=33% Similarity=0.384 Sum_probs=4.1
Q ss_pred CcEEecccCCCC
Q 028394 133 LKFLYLDYNHFN 144 (209)
Q Consensus 133 L~~L~Ls~N~l~ 144 (209)
|++|+|++|+++
T Consensus 4 L~~L~l~~n~i~ 15 (24)
T PF13516_consen 4 LETLDLSNNQIT 15 (24)
T ss_dssp -SEEE-TSSBEH
T ss_pred CCEEEccCCcCC
Confidence 344444444433
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.044 Score=46.07 Aligned_cols=58 Identities=26% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccC
Q 028394 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164 (209)
Q Consensus 104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 164 (209)
.|+++|||+..++-.--. .-++.+.+|+.|.|.++++...|-..++.-..|+.|+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 466666666555321000 0134455666666666666666666666666666666653
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.13 E-value=0.23 Score=41.41 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=61.9
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc-------chhcCCCCCCcEEecccCCCCCc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG-------LDTLSRLNNLKFLYLDYNHFNNS 146 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~-------~~~~~~l~~L~~L~Ls~N~l~g~ 146 (209)
..++.++|++|.+..-..-.+ ...+.+-.+|+..++|.-. +|..-+.. ...+-++++|+.++||.|-|...
T Consensus 30 d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 478999999998742110000 1124456677777777643 33322221 12367899999999999999887
Q ss_pred chhhh----cCCCCCCEEeccCCccc
Q 028394 147 IFSSL----GGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 147 iP~~l----~~l~~L~~L~L~~N~l~ 168 (209)
.|+.+ ..-+.|.+|.|++|.+-
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 77754 55688999999999873
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.99 E-value=0.031 Score=46.50 Aligned_cols=79 Identities=27% Similarity=0.303 Sum_probs=60.2
Q ss_pred CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh--
Q 028394 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-- 150 (209)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~-- 150 (209)
-.-+..|.|+=|.++++.+ +..+++|+.|+|..|.|.. +.+ ..-+.++++|+.|.|..|.-.|.-+..
T Consensus 40 Mp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~s-ldE--L~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIES-LDE--LEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred cccceeEEeeccccccchh-------HHHHHHHHHHHHHhccccc-HHH--HHHHhcCchhhhHhhccCCcccccchhHH
Confidence 3567888899898887654 6779999999999999863 222 122678999999999999998876653
Q ss_pred ---hcCCCCCCEEe
Q 028394 151 ---LGGLSSLRNLS 161 (209)
Q Consensus 151 ---l~~l~~L~~L~ 161 (209)
+.-|++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 45577777775
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.40 E-value=0.41 Score=24.91 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=9.3
Q ss_pred CCcEEecccCCCCCcchh
Q 028394 132 NLKFLYLDYNHFNNSIFS 149 (209)
Q Consensus 132 ~L~~L~Ls~N~l~g~iP~ 149 (209)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3555666666655 4443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.07 E-value=2.4 Score=30.06 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=43.0
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.+.+.. .+..++ ...|..+++|+.+.+..+ +. .++.. .+..++.++.+.+.+ .+...-...|..+
T Consensus 13 ~l~~i~~~~-~~~~I~-----~~~F~~~~~l~~i~~~~~-~~-~i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 13 NLESITFPN-TIKKIG-----ENAFSNCTSLKSINFPNN-LT-SIGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp T--EEEETS-T--EE------TTTTTT-TT-SEEEESST-TS-CE-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CCCEEEECC-CeeEeC-----hhhccccccccccccccc-cc-cccee---eeecccccccccccc-ccccccccccccc
Confidence 567777764 344333 345777778888888775 44 44443 367777788888865 4432233456678
Q ss_pred CCCCEEeccCC
Q 028394 155 SSLRNLSLIGN 165 (209)
Q Consensus 155 ~~L~~L~L~~N 165 (209)
++|+.+++..|
T Consensus 81 ~~l~~i~~~~~ 91 (129)
T PF13306_consen 81 TNLKNIDIPSN 91 (129)
T ss_dssp TTECEEEETTT
T ss_pred ccccccccCcc
Confidence 88888888665
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.87 E-value=0.79 Score=23.81 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=11.2
Q ss_pred CCCCCEEeccCCccc
Q 028394 154 LSSLRNLSLIGNRLI 168 (209)
Q Consensus 154 l~~L~~L~L~~N~l~ 168 (209)
+++|+.|++++|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356788888888875
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.59 E-value=1.2 Score=23.37 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=10.2
Q ss_pred CCCCEEeccCCccc
Q 028394 155 SSLRNLSLIGNRLI 168 (209)
Q Consensus 155 ~~L~~L~L~~N~l~ 168 (209)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777888877774
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.27 E-value=0.97 Score=38.27 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=39.4
Q ss_pred cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh---hcCCCCCCEEeccC
Q 028394 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS---LGGLSSLRNLSLIG 164 (209)
Q Consensus 100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~L~~ 164 (209)
.++++|..||||.+.. +.+..+..+-+++.|++|.++.+. +.+|.. +...++|.+||+.+
T Consensus 310 ~rcp~l~~LDLSD~v~---l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVM---LKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccc---cCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 3577888888887642 112223337788888888777665 456664 46678888888753
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=78.26 E-value=4.5 Score=28.55 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=38.5
Q ss_pred CccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccC
Q 028394 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164 (209)
Q Consensus 96 ~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 164 (209)
...|...++|+.+.+.. .+. .|+.. .+..+++|+.+++..+ +...-...|.++++|+.+.+.+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~---~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIK-KIGEN---AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TT---TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHHhCCCCCCEEEECC-Cee-EeChh---hccccccccccccccc-ccccceeeeecccccccccccc
Confidence 44577888999999985 455 45554 3788889999999885 6533334678888999999965
No 81
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.94 E-value=5 Score=27.82 Aligned_cols=6 Identities=50% Similarity=0.540 Sum_probs=3.1
Q ss_pred CCCchhH
Q 028394 1 MCGSKRV 7 (209)
Q Consensus 1 ~~~~~~~ 7 (209)
|. ||..
T Consensus 1 Ma-SK~~ 6 (95)
T PF07172_consen 1 MA-SKAF 6 (95)
T ss_pred Cc-hhHH
Confidence 66 4443
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.20 E-value=4.3 Score=36.96 Aligned_cols=85 Identities=24% Similarity=0.235 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCc--eeccccCCCcchhcC--CCCCCcEEecccCCCCCcch
Q 028394 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGN--NIAGCVENEGLDTLS--RLNNLKFLYLDYNHFNNSIF 148 (209)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~g~ip~~~~~~~~--~l~~L~~L~Ls~N~l~g~iP 148 (209)
...|.+++|++|++..+..+ .+.-..-++|..|+|++| .+... .+ +. +...|++|-+.+|.+....-
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~---sslsq~apklk~L~LS~N~~~~~~~--~e----l~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDAL---SSLSQIAPKLKTLDLSHNHSKISSE--SE----LDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred Ccceeeeecccchhhchhhh---hHHHHhcchhheeecccchhhhcch--hh----hhhhcCCCHHHeeecCCccccchh
Confidence 46788999999988655442 122334678999999999 43311 11 22 23458889999998865322
Q ss_pred --hh-h----cCCCCCCEEeccCCccc
Q 028394 149 --SS-L----GGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 149 --~~-l----~~l~~L~~L~L~~N~l~ 168 (209)
.. + .-.|+|..|| ++.+.
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD--G~ev~ 312 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD--GVEVQ 312 (585)
T ss_pred hhHHHHHHHHHhcchheeec--CcccC
Confidence 11 1 1356666554 55444
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.77 E-value=3.9 Score=37.21 Aligned_cols=66 Identities=29% Similarity=0.275 Sum_probs=42.7
Q ss_pred CCCCCCEEEccCceeccccCCCcchh-cCCCCCCcEEecccC--CCCCcchhhhcC--CCCCCEEeccCCcccccc
Q 028394 101 PFQQLESLYLIGNNIAGCVENEGLDT-LSRLNNLKFLYLDYN--HFNNSIFSSLGG--LSSLRNLSLIGNRLIGSI 171 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~-~~~l~~L~~L~Ls~N--~l~g~iP~~l~~--l~~L~~L~L~~N~l~G~i 171 (209)
+.+.+..+.|++|++.- +.. ..+ -...++|..|+|++| .+. .-.++.+ ...|++|-+.+|.+.-..
T Consensus 216 n~p~i~sl~lsnNrL~~-Ld~--~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-LDA--LSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhc-hhh--hhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 46788899999998862 221 001 234688999999999 333 1122322 245889999999886543
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=59.02 E-value=7.1 Score=42.03 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=23.4
Q ss_pred EccCceeccccCCCcchhcCCCCCCcEEecccCCCC
Q 028394 109 YLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN 144 (209)
Q Consensus 109 ~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (209)
||++|+|+ .||.. .|..+++|++|+|++|.|.
T Consensus 1 DLSnN~Ls-tLp~g---~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEG---ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChH---HhccCCCceEEEeeCCccc
Confidence 57788887 56654 3667788888888888774
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.83 E-value=3.1 Score=33.10 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC-CCCCCcEEecccCC-CCCcchhhhc
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNH-FNNSIFSSLG 152 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~l~~L~~L~Ls~N~-l~g~iP~~l~ 152 (209)
.|..+|-++..+...| -..+.+++.++.|.+.+..-- -+....-++ -.++|+.|+++.|. +|..=-..+.
T Consensus 102 ~IeaVDAsds~I~~eG-----le~L~~l~~i~~l~l~~ck~~---dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG-----LEHLRDLRSIKSLSLANCKYF---DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHH-----HHHHhccchhhhheeccccch---hhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 5677777766554222 122445666666666555321 111101122 34678888888664 5544345567
Q ss_pred CCCCCCEEeccC
Q 028394 153 GLSSLRNLSLIG 164 (209)
Q Consensus 153 ~l~~L~~L~L~~ 164 (209)
.+++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 777887777654
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.58 E-value=15 Score=39.84 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=27.0
Q ss_pred EcCCCCCCcccccccCCccccCCCCCCEEEccCceeccc
Q 028394 80 DLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC 118 (209)
Q Consensus 80 ~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ 118 (209)
||++|+|..+. ...|..+++|+.|+|++|.+.-.
T Consensus 1 DLSnN~LstLp-----~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIE-----EGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccC-----hHHhccCCCceEEEeeCCccccc
Confidence 57888887554 45688899999999999988644
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.39 E-value=32 Score=17.20 Aligned_cols=12 Identities=33% Similarity=0.149 Sum_probs=6.7
Q ss_pred CCCcEEecccCC
Q 028394 131 NNLKFLYLDYNH 142 (209)
Q Consensus 131 ~~L~~L~Ls~N~ 142 (209)
++|++|+|+++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666553
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=24.15 E-value=6.1 Score=35.58 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCCcccccccCCc---cccCCCCCCEEEccCceec
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNAS---LFTPFQQLESLYLIGNNIA 116 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~---~~~~l~~L~~L~Ls~N~l~ 116 (209)
.+++.++++.|.+...+...+... .+....+++.|.++++.++
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 355666666666532222111110 1223556666777666654
No 89
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.35 E-value=62 Score=19.35 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHhhC
Q 028394 28 LEQERYALLQLRHFF 42 (209)
Q Consensus 28 ~~~~~~aL~~~~~~~ 42 (209)
-.+|++||++.+..+
T Consensus 29 frqdrdallear~kl 43 (54)
T PF13260_consen 29 FRQDRDALLEARNKL 43 (54)
T ss_pred HhhhHHHHHHHHHHH
Confidence 357899999988765
No 90
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=22.97 E-value=94 Score=16.19 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 028394 1 MCGSKRVWVSELIFILLVV 19 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (209)
|..+.++|++..+..+.+.
T Consensus 6 myKsGK~Wv~a~~~~~~l~ 24 (29)
T TIGR03715 6 MYKSGKQWVFAAITTLALA 24 (29)
T ss_pred EEecccHHHHHHHHHHHHH
Confidence 5678889987666554443
No 91
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=20.40 E-value=67 Score=27.90 Aligned_cols=38 Identities=29% Similarity=0.275 Sum_probs=19.0
Q ss_pred CCCCcEEecccCC-CCCc-chhhhcCCCCCCEEeccCCcc
Q 028394 130 LNNLKFLYLDYNH-FNNS-IFSSLGGLSSLRNLSLIGNRL 167 (209)
Q Consensus 130 l~~L~~L~Ls~N~-l~g~-iP~~l~~l~~L~~L~L~~N~l 167 (209)
+++|++|.+.+.. ++.. +-.....+++|++|+++....
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5566666655444 3321 112223456666666664443
Done!