Query 028394
Match_columns 209
No_of_seqs 350 out of 2773
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 5.8E-28 2E-32 201.7 8.7 167 26-204 2-173 (313)
2 4eco_A Uncharacterized protein 99.9 7.3E-25 2.5E-29 199.0 13.4 163 26-203 26-298 (636)
3 3rgz_A Protein brassinosteroid 99.9 4.8E-24 1.6E-28 197.3 11.0 160 25-199 7-170 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 7.5E-24 2.6E-28 198.3 11.3 165 24-204 263-541 (876)
5 4fcg_A Uncharacterized protein 99.8 1.5E-22 5.2E-27 170.0 0.5 168 25-206 22-208 (328)
6 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.7E-22 129.0 10.7 129 60-197 6-143 (192)
7 3e6j_A Variable lymphocyte rec 99.7 5.9E-18 2E-22 135.1 8.0 125 58-193 15-148 (229)
8 2v70_A SLIT-2, SLIT homolog 2 99.7 1.4E-17 4.9E-22 132.1 7.8 137 60-205 9-154 (220)
9 2o6s_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 127.6 7.9 134 59-197 4-165 (208)
10 2v9t_B SLIT homolog 2 protein 99.7 5.4E-17 1.9E-21 128.7 7.8 135 60-204 9-152 (220)
11 2o6r_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 119.6 11.4 128 60-197 5-141 (177)
12 3m19_A Variable lymphocyte rec 99.6 1.6E-16 5.3E-21 128.1 6.3 125 75-205 36-180 (251)
13 2o6q_A Variable lymphocyte rec 99.6 2E-16 6.9E-21 128.8 6.8 97 76-181 39-135 (270)
14 3rgz_A Protein brassinosteroid 99.6 3.2E-16 1.1E-20 144.9 6.5 98 97-199 626-723 (768)
15 4fcg_A Uncharacterized protein 99.6 2E-16 6.7E-21 132.7 4.0 104 98-207 201-304 (328)
16 2wfh_A SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 116.0 10.6 124 60-194 8-140 (193)
17 2z81_A CD282 antigen, TOLL-lik 99.6 5.1E-16 1.7E-20 137.5 6.4 133 61-204 3-148 (549)
18 4g8a_A TOLL-like receptor 4; l 99.6 1.2E-15 3.9E-20 136.5 7.9 121 74-204 52-173 (635)
19 3v47_A TOLL-like receptor 5B a 99.6 5.8E-16 2E-20 134.1 5.3 131 59-198 5-147 (455)
20 2v70_A SLIT-2, SLIT homolog 2 99.6 5.1E-15 1.7E-19 117.3 9.1 114 74-197 57-170 (220)
21 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.1E-20 111.4 7.0 121 74-207 17-143 (149)
22 3vq2_A TLR4, TOLL-like recepto 99.6 2.1E-15 7.4E-20 135.1 7.5 128 74-206 32-179 (606)
23 1ogq_A PGIP-2, polygalacturona 99.6 4E-16 1.4E-20 129.8 1.4 120 74-203 76-197 (313)
24 4b8c_D Glucose-repressible alc 99.6 2.8E-16 9.5E-21 144.8 -0.2 98 99-204 243-340 (727)
25 3m19_A Variable lymphocyte rec 99.5 7.5E-15 2.6E-19 118.2 7.2 111 75-195 84-194 (251)
26 4b8c_D Glucose-repressible alc 99.5 1E-14 3.5E-19 134.4 8.5 167 29-206 131-318 (727)
27 1w8a_A SLIT protein; signaling 99.5 9E-15 3.1E-19 113.5 6.6 119 77-207 11-129 (192)
28 2z80_A TOLL-like receptor 2, v 99.5 7.7E-15 2.6E-19 123.6 6.5 135 58-204 26-174 (353)
29 3rfs_A Internalin B, repeat mo 99.5 1.4E-14 4.9E-19 118.0 7.2 94 99-197 129-222 (272)
30 2z62_A TOLL-like receptor 4, v 99.5 1.8E-14 6.2E-19 117.2 7.5 104 98-206 71-175 (276)
31 2r9u_A Variable lymphocyte rec 99.5 8.4E-14 2.9E-18 106.5 10.4 106 77-195 15-120 (174)
32 2ell_A Acidic leucine-rich nuc 99.5 1.5E-14 5.2E-19 109.4 5.9 120 74-206 24-149 (168)
33 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 105.5 10.5 105 78-195 13-117 (170)
34 2v9t_B SLIT homolog 2 protein 99.5 7.2E-14 2.5E-18 110.6 9.8 111 74-194 56-166 (220)
35 2xot_A Amphoterin-induced prot 99.5 3.3E-14 1.1E-18 120.5 8.2 111 62-181 18-138 (361)
36 3g39_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 106.3 9.4 103 61-172 8-119 (170)
37 3rfs_A Internalin B, repeat mo 99.5 2.4E-14 8.4E-19 116.6 7.0 122 75-206 86-207 (272)
38 2o6s_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 108.7 9.9 114 74-204 76-189 (208)
39 4g8a_A TOLL-like receptor 4; l 99.5 3.8E-14 1.3E-18 126.6 8.3 123 74-206 76-199 (635)
40 1ozn_A Reticulon 4 receptor; N 99.5 5.6E-14 1.9E-18 114.8 8.5 105 97-206 123-227 (285)
41 2z66_A Variable lymphocyte rec 99.5 7.4E-15 2.5E-19 121.1 3.2 138 59-206 4-177 (306)
42 2id5_A Lingo-1, leucine rich r 99.5 2.4E-14 8.3E-19 124.9 6.6 110 64-182 13-131 (477)
43 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 109.7 10.1 113 74-197 64-176 (229)
44 1ozn_A Reticulon 4 receptor; N 99.5 3.8E-14 1.3E-18 115.8 6.9 116 74-195 32-168 (285)
45 3vq2_A TLR4, TOLL-like recepto 99.5 5.2E-14 1.8E-18 126.1 8.2 94 97-194 98-195 (606)
46 4eco_A Uncharacterized protein 99.5 4E-15 1.4E-19 135.0 0.5 127 73-206 205-355 (636)
47 2z62_A TOLL-like receptor 4, v 99.5 1E-13 3.5E-18 112.7 8.6 122 75-206 29-151 (276)
48 3v47_A TOLL-like receptor 5B a 99.5 4.8E-14 1.6E-18 122.0 6.7 113 75-197 300-412 (455)
49 2ifg_A High affinity nerve gro 99.5 2E-13 6.7E-18 114.6 10.1 108 62-194 8-117 (347)
50 1dce_A Protein (RAB geranylger 99.5 5.8E-14 2E-18 126.0 7.1 108 75-197 442-550 (567)
51 3oja_B Anopheles plasmodium-re 99.5 2.1E-14 7.1E-19 129.2 4.0 92 98-194 94-185 (597)
52 3j0a_A TOLL-like receptor 5; m 99.5 3.6E-14 1.2E-18 132.5 5.1 135 62-203 14-171 (844)
53 4ezg_A Putative uncharacterize 99.4 7.2E-14 2.5E-18 108.5 5.9 108 74-194 66-173 (197)
54 3zyi_A Leucine-rich repeat-con 99.4 1.1E-13 3.6E-18 120.4 7.6 118 64-191 56-182 (452)
55 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.8E-18 105.0 7.1 105 74-193 19-126 (176)
56 3zyj_A Leucine-rich repeat-con 99.4 1.1E-13 3.8E-18 119.9 7.2 118 64-191 45-171 (440)
57 3t6q_A CD180 antigen; protein- 99.4 9.3E-14 3.2E-18 124.4 6.6 123 74-206 33-179 (606)
58 2o6q_A Variable lymphocyte rec 99.4 1.7E-13 5.8E-18 111.3 7.3 101 99-204 105-205 (270)
59 2xwt_C Thyrotropin receptor; s 99.4 6.5E-14 2.2E-18 111.7 4.5 120 74-204 31-155 (239)
60 2xot_A Amphoterin-induced prot 99.4 4.1E-13 1.4E-17 113.7 9.4 122 73-205 63-188 (361)
61 2wfh_A SLIT homolog 2 protein 99.4 1.8E-13 6.1E-18 106.3 6.5 116 77-206 13-128 (193)
62 1ziw_A TOLL-like receptor 3; i 99.4 6.2E-14 2.1E-18 127.3 4.2 123 74-201 25-166 (680)
63 3oja_A Leucine-rich immune mol 99.4 4.3E-13 1.5E-17 118.1 9.3 98 101-207 167-265 (487)
64 3o6n_A APL1; leucine-rich repe 99.4 4.8E-14 1.6E-18 120.1 3.1 92 98-194 88-179 (390)
65 3t6q_A CD180 antigen; protein- 99.4 3.7E-13 1.3E-17 120.6 8.4 105 97-207 443-550 (606)
66 2z63_A TOLL-like receptor 4, v 99.4 2E-13 6.8E-18 121.1 6.6 105 97-206 70-175 (570)
67 1p9a_G Platelet glycoprotein I 99.4 2.1E-13 7.2E-18 112.3 6.3 89 99-193 96-185 (290)
68 1p9a_G Platelet glycoprotein I 99.4 2.8E-13 9.4E-18 111.6 6.8 108 76-194 102-209 (290)
69 2z63_A TOLL-like receptor 4, v 99.4 4.2E-13 1.4E-17 119.0 8.5 124 74-207 28-152 (570)
70 2z66_A Variable lymphocyte rec 99.4 9.3E-14 3.2E-18 114.5 3.8 97 99-200 146-243 (306)
71 3o53_A Protein LRIM1, AGAP0063 99.4 1.1E-12 3.7E-17 109.0 9.7 100 100-208 166-266 (317)
72 2o6r_A Variable lymphocyte rec 99.4 5.5E-13 1.9E-17 101.6 7.2 117 77-206 10-126 (177)
73 2id5_A Lingo-1, leucine rich r 99.4 4.6E-13 1.6E-17 116.8 7.4 123 74-206 56-178 (477)
74 4ezg_A Putative uncharacterize 99.4 1.4E-13 4.8E-18 106.9 3.1 117 74-205 44-160 (197)
75 2z7x_B TOLL-like receptor 1, v 99.4 2.1E-13 7.2E-18 120.1 4.6 109 74-195 21-130 (520)
76 4ecn_A Leucine-rich repeat pro 99.4 5.2E-14 1.8E-18 131.9 0.6 124 74-206 448-597 (876)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.7E-13 9.2E-18 120.8 4.9 108 74-194 52-160 (562)
78 1wwl_A Monocyte differentiatio 99.4 4.4E-14 1.5E-18 117.2 -0.2 89 101-195 93-188 (312)
79 1xku_A Decorin; proteoglycan, 99.4 5.3E-13 1.8E-17 111.2 5.9 120 60-192 29-157 (330)
80 2r9u_A Variable lymphocyte rec 99.4 3E-12 1E-16 97.8 9.4 100 62-170 12-120 (174)
81 2z81_A CD282 antigen, TOLL-lik 99.4 1.1E-13 3.7E-18 122.5 1.2 119 74-202 50-170 (549)
82 3oja_B Anopheles plasmodium-re 99.3 8.8E-13 3E-17 118.6 7.1 122 75-207 52-174 (597)
83 2z7x_B TOLL-like receptor 1, v 99.3 3.1E-13 1.1E-17 119.0 4.0 114 74-203 45-163 (520)
84 1wwl_A Monocyte differentiatio 99.3 2.8E-13 9.4E-18 112.4 3.3 110 74-193 95-214 (312)
85 3j0a_A TOLL-like receptor 5; m 99.3 1.3E-12 4.5E-17 121.9 7.0 120 74-201 73-195 (844)
86 3o6n_A APL1; leucine-rich repe 99.3 1.9E-12 6.6E-17 110.1 7.1 122 74-206 45-167 (390)
87 2ft3_A Biglycan; proteoglycan, 99.3 5.6E-12 1.9E-16 105.1 9.2 119 61-192 32-159 (332)
88 3zyj_A Leucine-rich repeat-con 99.3 5E-12 1.7E-16 109.5 9.1 90 99-193 203-292 (440)
89 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.5E-17 97.7 5.4 108 74-193 49-160 (168)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.6E-12 5.5E-17 115.8 5.8 115 77-207 34-149 (562)
91 1ziw_A TOLL-like receptor 3; i 99.3 4.1E-12 1.4E-16 115.3 8.6 122 75-206 74-197 (680)
92 3zyi_A Leucine-rich repeat-con 99.3 5.5E-12 1.9E-16 109.5 8.8 89 100-193 215-303 (452)
93 2je0_A Acidic leucine-rich nuc 99.3 1E-12 3.5E-17 97.2 3.5 98 102-206 16-115 (149)
94 1a9n_A U2A', U2A'; complex (nu 99.3 4.7E-12 1.6E-16 96.5 6.2 106 75-194 43-154 (176)
95 1xku_A Decorin; proteoglycan, 99.3 4E-12 1.4E-16 105.8 6.0 85 104-194 193-277 (330)
96 2ast_B S-phase kinase-associat 99.3 5.4E-13 1.8E-17 111.0 0.5 103 99-206 89-197 (336)
97 2z80_A TOLL-like receptor 2, v 99.3 7.2E-13 2.5E-17 111.4 1.2 90 99-194 120-212 (353)
98 4glp_A Monocyte differentiatio 99.2 9.2E-12 3.2E-16 103.0 7.2 126 75-206 92-226 (310)
99 3cvr_A Invasion plasmid antige 99.2 1.5E-12 5.1E-17 116.9 1.5 95 50-169 34-134 (571)
100 4glp_A Monocyte differentiatio 99.2 8.1E-12 2.8E-16 103.3 5.8 111 74-193 145-264 (310)
101 1dce_A Protein (RAB geranylger 99.2 1.9E-11 6.5E-16 109.7 8.6 87 74-172 463-550 (567)
102 2xwt_C Thyrotropin receptor; s 99.2 1.2E-11 4.1E-16 98.4 5.7 108 74-193 55-169 (239)
103 3oja_A Leucine-rich immune mol 99.2 8E-12 2.8E-16 110.0 5.1 113 75-201 121-234 (487)
104 2ast_B S-phase kinase-associat 99.2 5.4E-12 1.8E-16 104.9 3.6 104 99-207 114-225 (336)
105 2ft3_A Biglycan; proteoglycan, 99.2 8.5E-12 2.9E-16 104.0 4.6 121 75-206 194-322 (332)
106 3o53_A Protein LRIM1, AGAP0063 99.2 7.9E-12 2.7E-16 103.8 4.0 116 75-204 121-237 (317)
107 1h6t_A Internalin B; cell adhe 99.2 2.3E-11 7.8E-16 100.1 6.5 85 99-194 108-192 (291)
108 1h6t_A Internalin B; cell adhe 99.2 3E-11 1E-15 99.4 7.2 113 74-206 68-180 (291)
109 4fmz_A Internalin; leucine ric 99.2 5.7E-11 2E-15 99.2 8.6 108 74-197 221-328 (347)
110 4ay9_X Follicle-stimulating ho 99.2 2.6E-11 8.9E-16 102.1 6.5 108 61-176 8-125 (350)
111 3cvr_A Invasion plasmid antige 99.2 5.3E-11 1.8E-15 106.8 8.7 89 103-205 160-255 (571)
112 1h6u_A Internalin H; cell adhe 99.2 4.5E-11 1.5E-15 99.0 7.1 80 74-168 85-164 (308)
113 2ifg_A High affinity nerve gro 99.2 5.4E-11 1.8E-15 99.6 7.7 88 74-171 31-119 (347)
114 1h6u_A Internalin H; cell adhe 99.2 5.8E-11 2E-15 98.3 7.7 103 74-194 63-165 (308)
115 4fmz_A Internalin; leucine ric 99.1 3.1E-11 1.1E-15 100.8 5.7 113 75-205 200-312 (347)
116 1ds9_A Outer arm dynein; leuci 99.1 2.5E-13 8.5E-18 105.5 -7.9 110 74-198 48-158 (198)
117 1o6v_A Internalin A; bacterial 99.1 8.3E-11 2.8E-15 102.5 6.7 88 99-197 283-370 (466)
118 1jl5_A Outer protein YOPM; leu 99.1 1.1E-10 3.9E-15 101.8 7.5 89 103-204 317-422 (454)
119 1m9s_A Internalin B; cell inva 99.1 7.2E-11 2.5E-15 106.7 6.2 85 99-194 105-189 (605)
120 2ca6_A RAN GTPase-activating p 99.1 2E-11 6.8E-16 103.8 2.3 94 98-196 211-319 (386)
121 1m9s_A Internalin B; cell inva 99.1 1.1E-10 3.9E-15 105.4 7.3 113 74-206 65-177 (605)
122 1xeu_A Internalin C; cellular 99.1 9.3E-11 3.2E-15 95.1 6.1 102 74-194 63-164 (263)
123 1o6v_A Internalin A; bacterial 99.1 1.7E-10 5.7E-15 100.6 7.5 63 127-194 283-345 (466)
124 3g06_A SSPH2 (leucine-rich rep 99.1 3.8E-10 1.3E-14 102.3 10.0 119 74-206 181-310 (622)
125 2ca6_A RAN GTPase-activating p 99.1 2.7E-11 9.3E-16 102.9 2.3 127 75-207 160-306 (386)
126 3bz5_A Internalin-J, INLJ; leu 99.1 3.4E-10 1.2E-14 98.8 8.9 100 75-196 65-164 (457)
127 3bz5_A Internalin-J, INLJ; leu 99.0 3.2E-10 1.1E-14 99.0 7.4 88 99-197 187-281 (457)
128 1ds9_A Outer arm dynein; leuci 99.0 8.2E-13 2.8E-17 102.6 -8.9 99 98-206 43-142 (198)
129 1xeu_A Internalin C; cellular 99.0 7.2E-10 2.5E-14 89.8 8.1 111 74-205 41-151 (263)
130 1jl5_A Outer protein YOPM; leu 99.0 1.9E-10 6.4E-15 100.4 4.6 57 103-169 131-187 (454)
131 3rw6_A Nuclear RNA export fact 98.9 8.2E-11 2.8E-15 96.0 -2.3 24 60-83 76-99 (267)
132 3g06_A SSPH2 (leucine-rich rep 98.9 1.5E-09 5.2E-14 98.3 5.2 67 131-207 221-287 (622)
133 3goz_A Leucine-rich repeat-con 98.9 2.4E-10 8.3E-15 96.4 -0.0 122 75-202 52-189 (362)
134 1z7x_W Ribonuclease inhibitor; 98.8 3.3E-10 1.1E-14 97.8 -1.0 65 129-194 339-412 (461)
135 1z7x_W Ribonuclease inhibitor; 98.8 6.9E-10 2.4E-14 95.8 -0.3 39 131-169 370-412 (461)
136 3goz_A Leucine-rich repeat-con 98.7 2.8E-09 9.6E-14 89.9 2.8 119 74-198 22-156 (362)
137 4ay9_X Follicle-stimulating ho 98.7 3.3E-08 1.1E-12 83.0 7.2 104 78-194 13-118 (350)
138 3rw6_A Nuclear RNA export fact 98.7 1.9E-08 6.6E-13 81.9 5.4 67 101-173 168-238 (267)
139 3un9_A NLR family member X1; l 98.6 6.9E-09 2.4E-13 88.3 1.5 96 102-202 154-261 (372)
140 3un9_A NLR family member X1; l 98.5 1E-08 3.4E-13 87.3 0.4 118 74-196 101-227 (372)
141 1io0_A Tropomodulin; LRR prote 98.4 8E-08 2.7E-12 73.7 1.7 130 73-204 35-177 (185)
142 3ogk_B Coronatine-insensitive 98.1 1.7E-07 5.7E-12 83.3 -1.5 65 101-169 162-234 (592)
143 3sb4_A Hypothetical leucine ri 98.1 5.6E-06 1.9E-10 68.6 7.5 99 74-183 226-325 (329)
144 3ogk_B Coronatine-insensitive 98.1 1.2E-07 4.3E-12 84.1 -2.8 122 75-207 113-246 (592)
145 1io0_A Tropomodulin; LRR prote 97.9 5.9E-06 2E-10 63.2 3.8 101 99-200 32-143 (185)
146 2p1m_B Transport inhibitor res 97.8 1.7E-06 5.8E-11 76.7 -0.7 84 74-166 105-195 (594)
147 2p1m_B Transport inhibitor res 97.8 2.8E-06 9.7E-11 75.3 -0.4 95 100-200 429-526 (594)
148 3sb4_A Hypothetical leucine ri 97.7 1.8E-05 6E-10 65.6 2.6 85 102-194 225-311 (329)
149 3e4g_A ATP synthase subunit S, 97.5 7.5E-05 2.6E-09 56.9 3.5 84 74-166 61-150 (176)
150 3rfe_A Platelet glycoprotein I 97.4 0.00034 1.2E-08 50.4 6.2 55 78-144 12-68 (130)
151 2ra8_A Uncharacterized protein 97.2 0.00025 8.7E-09 59.9 4.4 100 101-201 217-328 (362)
152 2ra8_A Uncharacterized protein 97.1 7.3E-05 2.5E-09 63.2 0.3 69 101-170 250-322 (362)
153 3e4g_A ATP synthase subunit S, 96.5 0.0014 4.9E-08 49.7 2.9 84 103-191 61-150 (176)
154 3rfe_A Platelet glycoprotein I 96.4 0.0056 1.9E-07 43.9 5.5 57 106-168 11-68 (130)
155 4fdw_A Leucine rich hypothetic 96.2 0.013 4.6E-07 49.8 7.6 66 96-165 264-333 (401)
156 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0026 8.8E-08 49.2 2.7 92 73-165 40-136 (197)
157 4fdw_A Leucine rich hypothetic 96.0 0.017 5.7E-07 49.2 7.5 69 94-169 291-359 (401)
158 1pgv_A TMD-1, tropomodulin TMD 95.3 0.0088 3E-07 46.2 2.5 72 99-170 37-113 (197)
159 4fs7_A Uncharacterized protein 91.8 0.21 7.3E-06 41.8 5.3 78 97-182 291-369 (394)
160 4gt6_A Cell surface protein; l 91.8 0.41 1.4E-05 40.0 7.0 39 127-166 330-368 (394)
161 4gt6_A Cell surface protein; l 90.7 0.74 2.5E-05 38.4 7.5 79 97-183 282-361 (394)
162 4h09_A Hypothetical leucine ri 90.5 0.32 1.1E-05 40.3 5.0 62 98-164 258-319 (379)
163 4h09_A Hypothetical leucine ri 89.4 1.3 4.5E-05 36.5 8.0 64 97-165 280-343 (379)
164 4fs7_A Uncharacterized protein 88.0 1.4 4.8E-05 36.7 7.2 60 98-163 315-374 (394)
165 3ox7_P MH027; urokinase-type p 36.9 11 0.00036 17.6 0.6 11 58-68 4-14 (23)
166 2lz0_A Uncharacterized protein 21.6 81 0.0028 20.7 3.2 39 97-140 14-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=5.8e-28 Score=201.71 Aligned_cols=167 Identities=25% Similarity=0.400 Sum_probs=125.8
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCcc--ccceEEcCCC--CcEEEEEcCCCCCCcccccccCCccccC
Q 028394 26 GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFTP 101 (209)
Q Consensus 26 ~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~--W~gv~C~~~~--~~v~~L~L~~~~l~~~~~~~~~~~~~~~ 101 (209)
.|.++|++||++||+++.+|. .+.+|.. +.+||. |.||+|+... ++|+.|+|+++.+.....+ +..+..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~---~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI---PSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC---CGGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc---ChhHhC
Confidence 588999999999999998776 7899965 678998 9999998633 7999999999998731011 345667
Q ss_pred CCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394 102 FQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST 180 (209)
Q Consensus 102 l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~ 180 (209)
+++|++|++++ |.+.+.+|.. ++++++|++|++++|++++.+|..++++++|++|++++|+++|.+|..++++.+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 77777777774 7777777776 777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCccCCCCCchhhHHHHHHHH
Q 028394 181 LFPCPIFCGSYFTEQLEVLIRDLA 204 (209)
Q Consensus 181 l~~~~~~~~n~~~~~~p~~~~~L~ 204 (209)
|.. ..+.+|.+++.+|..+..++
T Consensus 151 L~~-L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 151 LVG-ITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp CCE-EECCSSCCEEECCGGGGCCC
T ss_pred CCe-EECcCCcccCcCCHHHhhhh
Confidence 664 66667777776666665554
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=7.3e-25 Score=199.02 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=142.4
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCC--------CCCCCCCCCCCCCccc---cceEEcCCCCcEEEEEcCCCCCCccccccc
Q 028394 26 GCLEQERYALLQLRHFFNDDQCL--------QNCWVDDENYSDCCQW---ERVECNDTTGRVIKLDLRDTRNWESAEWYM 94 (209)
Q Consensus 26 ~~~~~~~~aL~~~~~~~~~~~~~--------l~~W~~~~~~~~~C~W---~gv~C~~~~~~v~~L~L~~~~l~~~~~~~~ 94 (209)
+....|++||.+++.++.++.+. ..+|+. +.+||.| .||+|+. .++|+.|+|+++++. |.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~--g~l-- 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS--GRV-- 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC---SSCGGGTTCCTTEEECT-TCCEEEEECTTSCCE--EEE--
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---CCCcccccCCCCeEEcC-CCCEEEEEecCcccC--CcC--
Confidence 34457999999999999877653 236965 6899999 9999986 589999999999986 332
Q ss_pred CCccccCCCCCCEEEccCc-------------------------------------------------------------
Q 028394 95 NASLFTPFQQLESLYLIGN------------------------------------------------------------- 113 (209)
Q Consensus 95 ~~~~~~~l~~L~~L~Ls~N------------------------------------------------------------- 113 (209)
++.+++|++|++|+|++|
T Consensus 98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred -ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 456899999999999988
Q ss_pred -----------------eeccccCCCcchhcCCCCCCcEEecccCCCCCc-----------------chhhhc--CCCCC
Q 028394 114 -----------------NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-----------------IFSSLG--GLSSL 157 (209)
Q Consensus 114 -----------------~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L 157 (209)
+++| ||.. ++++++|++|+|++|+++|. +|+.++ ++++|
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred cccccchhhhhhccccCCCcc-CCHH----HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 4556 7777 99999999999999999996 999999 99999
Q ss_pred CEEeccCCccccccCCCCcccCCCCCCCccCCCC-Cch-hhHHHHHHH
Q 028394 158 RNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY-FTE-QLEVLIRDL 203 (209)
Q Consensus 158 ~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~-~~~-~~p~~~~~L 203 (209)
++|++++|++.|.+|..++++++|.. ..+.+|. ++| .+|..++.|
T Consensus 252 ~~L~L~~n~l~~~~p~~l~~l~~L~~-L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPTFLKALPEMQL-INVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CEEEEECCTTCSSCCTTTTTCSSCCE-EECTTCTTSCHHHHHHHHHHH
T ss_pred CEEEecCCcCCccChHHHhcCCCCCE-EECcCCCCCccccchHHHHhh
Confidence 99999999999999999999999986 8889998 999 999999988
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.8e-24 Score=197.28 Aligned_cols=160 Identities=21% Similarity=0.257 Sum_probs=103.6
Q ss_pred CCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCCCcc-cccccCCccccCCC
Q 028394 25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWES-AEWYMNASLFTPFQ 103 (209)
Q Consensus 25 ~~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~-~~~~~~~~~~~~l~ 103 (209)
+.+.++|++||++||+++.+|. .+++|.. +.+||+|.||+|+ .++|+.|+|+++.+... ..+ ++.+.+++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l---~~~l~~L~ 77 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAV---SSSLLSLT 77 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHH---HHHTTTCT
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCcc---ChhHhccC
Confidence 4457889999999999999888 8999964 6899999999998 68999999999987631 001 12344455
Q ss_pred CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh--hhcCCCCCCEEeccCCccccccCCCC-cccCC
Q 028394 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--SLGGLSSLRNLSLIGNRLIGSIDIKG-KYAST 180 (209)
Q Consensus 104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~G~iP~~~-~~l~~ 180 (209)
+|+.++++.|.+. ++|.. ++.+++|++|||++|+++|.+|. .++++++|++|+|++|.++|.+|..+ .++.+
T Consensus 78 ~L~~l~~~~~~~~-~l~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 78 GLESLFLSNSHIN-GSVSG----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TCCEEECTTSCEE-ECCCC----CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred cccccCCcCCCcC-CCchh----hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 5555555555443 23444 55555566666666665555555 55555566666666665555555544 45555
Q ss_pred CCCCCccCCCCCchhhHHH
Q 028394 181 LFPCPIFCGSYFTEQLEVL 199 (209)
Q Consensus 181 l~~~~~~~~n~~~~~~p~~ 199 (209)
|.. ..+++|.+++.+|..
T Consensus 153 L~~-L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 153 LEV-LDLSANSISGANVVG 170 (768)
T ss_dssp CSE-EECCSSCCEEETHHH
T ss_pred CCE-EECCCCccCCcCChh
Confidence 543 555555555555544
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=7.5e-24 Score=198.26 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=140.0
Q ss_pred CCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCC--CCCCC--ccc------------cceEEcCCCCcEEEEEcCCCCCC
Q 028394 24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDE--NYSDC--CQW------------ERVECNDTTGRVIKLDLRDTRNW 87 (209)
Q Consensus 24 ~~~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~--~~~~~--C~W------------~gv~C~~~~~~v~~L~L~~~~l~ 87 (209)
.+++..+|++||++||+++.+| +|+... ...+| |.| .||+|+. .++|+.|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3445678999999999999766 564310 01355 999 9999986 689999999999987
Q ss_pred cccccccCCccccCCCCCCEEEc-cCceeccc------------------------------------------------
Q 028394 88 ESAEWYMNASLFTPFQQLESLYL-IGNNIAGC------------------------------------------------ 118 (209)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~L-s~N~l~g~------------------------------------------------ 118 (209)
|.+ ++.+++|++|++|+| ++|.++|.
T Consensus 337 --G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 337 --GRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp --EEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred --CcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 332 456899999999999 88877666
Q ss_pred ----------------------------cCCCcchhcCCCCCCcEEecccCCCCC-----------------cchhhhc-
Q 028394 119 ----------------------------VENEGLDTLSRLNNLKFLYLDYNHFNN-----------------SIFSSLG- 152 (209)
Q Consensus 119 ----------------------------ip~~~~~~~~~l~~L~~L~Ls~N~l~g-----------------~iP~~l~- 152 (209)
||.. ++++++|++|+|++|+++| .+|+.++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~----l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred ccccccccccccchhhceeccccCcccchhHH----HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 5555 9999999999999999998 4999988
Q ss_pred -CCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCC-Cch-hhHHHHHHHH
Q 028394 153 -GLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY-FTE-QLEVLIRDLA 204 (209)
Q Consensus 153 -~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~-~~~-~~p~~~~~L~ 204 (209)
++++|++|+|++|++.|.+|..++++++|.. ..+.+|. ++| .+|..++.++
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~-L~Ls~N~~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQS-LNIACNRGISAAQLKADWTRLA 541 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE-EECTTCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCE-EECcCCCCcccccchHHHHhhh
Confidence 9999999999999999999999999999986 8889998 999 9999999887
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.5e-22 Score=170.01 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=123.7
Q ss_pred CCCcHHHHHHHHHHHhhCC-CCCCCCCCCCC-CCCCCCCccccceEEcC--------CCCcEEEEEcCCCCCCccccccc
Q 028394 25 EGCLEQERYALLQLRHFFN-DDQCLQNCWVD-DENYSDCCQWERVECND--------TTGRVIKLDLRDTRNWESAEWYM 94 (209)
Q Consensus 25 ~~~~~~~~~aL~~~~~~~~-~~~~~l~~W~~-~~~~~~~C~W~gv~C~~--------~~~~v~~L~L~~~~l~~~~~~~~ 94 (209)
.++..+|++||++||..+. ++.++...|.. .....++|.|.|+.|.. ...+|+.|+|+++.++.++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp---- 97 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---- 97 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCC----
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcC----
Confidence 4455678999999999884 66667778830 02267899999999952 2478999999999987553
Q ss_pred CCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCC
Q 028394 95 NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK 174 (209)
Q Consensus 95 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~ 174 (209)
..+..+++|++|+|++|.++ .+|.. ++++++|++|+|++|+++ .+|..++++++|++|++++|++.|.+|..
T Consensus 98 --~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 98 --DQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp --SCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred --hhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 34666888888888888888 77877 788888888888888887 77877888888888888888888888877
Q ss_pred Ccc---------cCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 175 GKY---------ASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 175 ~~~---------l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++. +.+|.. ..+++|.++ .+|..++.++++
T Consensus 170 ~~~~~~~~~~~~l~~L~~-L~L~~n~l~-~lp~~l~~l~~L 208 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQS-LRLEWTGIR-SLPASIANLQNL 208 (328)
T ss_dssp SEEEC-CCCEEESTTCCE-EEEEEECCC-CCCGGGGGCTTC
T ss_pred HhhccchhhhccCCCCCE-EECcCCCcC-cchHhhcCCCCC
Confidence 654 666553 556666666 555555554443
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.7e-17 Score=128.99 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=112.1
Q ss_pred CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394 60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (209)
Q Consensus 60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l 130 (209)
..|.|..+.|... ...++.|++++|.+..+.. ...+..+++|++|+|++|.+++..|.. +.++
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l 77 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNA----FEGA 77 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhH----cCCc
Confidence 3478999999741 1378999999999875532 234788999999999999999888887 9999
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+.+|.. ..+.+|.+++..+
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS-LNLASNPFNCNCH 143 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE-EECTTCCBCCSGG
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE-EEeCCCCccCcCc
Confidence 99999999999999988888999999999999999999999999999999885 8889999997654
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=5.9e-18 Score=135.05 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=67.5
Q ss_pred CCCCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC
Q 028394 58 YSDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS 128 (209)
Q Consensus 58 ~~~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 128 (209)
....|+|.+|.|... ...++.|+|++|.+..+. +..+..+++|++|+|++|.+++ +|.. .+.
T Consensus 15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~-i~~~---~~~ 85 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLE-----PGVFDSLINLKELYLGSNQLGA-LPVG---VFD 85 (229)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCC-CCTT---TTT
T ss_pred CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccC-----HHHhhCccCCcEEECCCCCCCC-cChh---hcc
Confidence 578899999999751 246888999999887542 2334455555555555555542 2221 134
Q ss_pred CCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 129 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~ 193 (209)
.+++|++|+|++|++++..+..|..+++|++|+|++|+++ .||..+..+.+|.. ..+.+|.++
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~-L~L~~N~l~ 148 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH-LALDQNQLK 148 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE-EECCSSCCC
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE-EECCCCcCC
Confidence 4555555555555555433334444445555555555444 44444444444432 333344333
No 8
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=132.10 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=81.2
Q ss_pred CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394 60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (209)
Q Consensus 60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l 130 (209)
..|.|..+.|... ...++.|+|++|.++.+.. ...+..+++|++|+|++|.+++..|.. +.++
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~----~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l 80 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEA----TGIFKKLPQLRKINFSNNKITDIEEGA----FEGA 80 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECC----CCCGGGCTTCCEEECCSSCCCEECTTT----TTTC
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCc----hhhhccCCCCCEEECCCCcCCEECHHH----hCCC
Confidence 3478888888641 1356789999998875422 233555666666666666666544444 5566
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
++|++|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..|..+..+++
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL-LSLYDNQITTVAPGAFDTLHS 154 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE-EECTTSCCCCBCTTTTTTCTT
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE-EECCCCcCCEECHHHhcCCCC
Confidence 66666666666666555555566666666666666666555555555555543 555555555554544444433
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.4e-17 Score=127.58 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=71.2
Q ss_pred CCCccccceEEcCC---------CCcEEEEEcCCCCCCccccc-------------------ccCCccccCCCCCCEEEc
Q 028394 59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEW-------------------YMNASLFTPFQQLESLYL 110 (209)
Q Consensus 59 ~~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~-------------------~~~~~~~~~l~~L~~L~L 110 (209)
...|.|.+|.|... ..+++.|++++|.++.+... .+++..+..+++|++|++
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 34589999999751 23688999999987643321 011122334444555555
Q ss_pred cCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCC
Q 028394 111 IGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGS 190 (209)
Q Consensus 111 s~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n 190 (209)
++|.+++..+.. +..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+.+|.. ..+.+|
T Consensus 84 s~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~~N 158 (208)
T 2o6s_A 84 STNQLQSLPNGV----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY-IWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSC
T ss_pred CCCcCCccCHhH----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE-EEecCC
Confidence 555444322222 445555555555555555444444555555555555555555433333455555443 455555
Q ss_pred CCchhhH
Q 028394 191 YFTEQLE 197 (209)
Q Consensus 191 ~~~~~~p 197 (209)
.+.+..|
T Consensus 159 ~~~~~~~ 165 (208)
T 2o6s_A 159 PWDCTCP 165 (208)
T ss_dssp CBCCCTT
T ss_pred CeecCCC
Confidence 5555443
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=5.4e-17 Score=128.75 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=87.0
Q ss_pred CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394 60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (209)
Q Consensus 60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l 130 (209)
..|.|..|.|... ...++.|++++|.++.+. +..|..+++|++|+|++|.+++..|.. +.++
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~-----~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l 79 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIP-----PGAFSPYKKLRRIDLSNNQISELAPDA----FQGL 79 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEEC-----TTSSTTCTTCCEEECCSSCCCEECTTT----TTTC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcC-----HhHhhCCCCCCEEECCCCcCCCcCHHH----hhCC
Confidence 3478999999741 136899999999887543 334666777777777777777655665 6666
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHH
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLA 204 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~ 204 (209)
++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..++.+..++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL-LSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCT
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE-EECCCCcCCEECHHHHhCCC
Confidence 67777777777766444444566666666666666666666666666666553 55556666554444444333
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.3e-16 Score=119.64 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=106.1
Q ss_pred CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394 60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (209)
Q Consensus 60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l 130 (209)
..|+|.++.|... ...++.|++++|.+..+. +..+..+++|++|++++|.+++..+.. +..+
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l 75 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKL 75 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeC-----HHHhcCcccccEEECCCCcceEeChhH----ccCC
Confidence 4588999999751 246899999999887443 455788999999999999999655554 7899
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
++|++|++++|++++..|..++.+++|++|++++|++++-.|..+..+.+|.. ..+.+|.+++..|
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK-IWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSSCBCCCHH
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE-EEecCCCeeccCc
Confidence 99999999999999877777899999999999999999544444577888875 8889999998776
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.6e-16 Score=128.09 Aligned_cols=125 Identities=20% Similarity=0.133 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc--------------------chhcCCCCCCc
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG--------------------LDTLSRLNNLK 134 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~--------------------~~~~~~l~~L~ 134 (209)
.++.|++++|.+..+. +..+..+++|++|++++|.+++..|... +..+..+++|+
T Consensus 36 ~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 36 DTEKLDLQSTGLATLS-----DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEccCCCcCccC-----HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 4667777777765332 2234445555555555555554333330 00144555555
Q ss_pred EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
+|+|++|++++..|..++.+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..+..+..+++
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT-LSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTT
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE-EECCCCcCCccCHHHHhCCCC
Confidence 5555555555444444455555555555555555433334555555543 555566665544444444433
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=2e-16 Score=128.76 Aligned_cols=97 Identities=23% Similarity=0.254 Sum_probs=45.4
Q ss_pred EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (209)
Q Consensus 76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 155 (209)
++.|+++++.+..+. +..+..+++|++|++++|.++. +|.. .+..+++|++|++++|++++..+..+..++
T Consensus 39 l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~-i~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLP-----SKAFHRLTKLRLLYLNDNKLQT-LPAG---IFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp CSEEECCSSCCSCCC-----TTSSSSCTTCCEEECCSSCCSC-CCTT---TTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred CCEEECcCCCCCeeC-----HHHhcCCCCCCEEECCCCccCe-eChh---hhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 455555555544322 2235555666666666666552 3332 134445555555555555443333444444
Q ss_pred CCCEEeccCCccccccCCCCcccCCC
Q 028394 156 SLRNLSLIGNRLIGSIDIKGKYASTL 181 (209)
Q Consensus 156 ~L~~L~L~~N~l~G~iP~~~~~l~~l 181 (209)
+|++|++++|++++..|..+..+.+|
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCC
Confidence 44444444444444333333444433
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=3.2e-16 Score=144.89 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=88.3
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~ 176 (209)
..+..++.|++|||++|+++|.+|.. ++++++|++|+|++|+++|.+|..++++++|++|||++|+++|.||..++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred hhhhccccccEEECcCCcccccCCHH----HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 34667889999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccCCCCCchhhHHH
Q 028394 177 YASTLFPCPIFCGSYFTEQLEVL 199 (209)
Q Consensus 177 ~l~~l~~~~~~~~n~~~~~~p~~ 199 (209)
++++|.. ..+++|+++|.||..
T Consensus 702 ~l~~L~~-L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 702 ALTMLTE-IDLSNNNLSGPIPEM 723 (768)
T ss_dssp GCCCCSE-EECCSSEEEEECCSS
T ss_pred CCCCCCE-EECcCCcccccCCCc
Confidence 9999885 888999999998853
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.61 E-value=2e-16 Score=132.69 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=89.7
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY 177 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~ 177 (209)
.+..+++|++|++++|.+++ +|+. +..+++|++|++++|++.+.+|..++.+++|++|++++|++.+.+|..+++
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~-l~~~----l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSA-LGPA----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCC-CCGG----GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred hhcCCCCCCEEEccCCCCCc-Cchh----hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 46778888888888888884 6666 888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 178 ASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 178 l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
+.+|.. ..+.+|++.+.+|+.++.|+++.
T Consensus 276 l~~L~~-L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 276 LTQLEK-LDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CTTCCE-EECTTCTTCCCCCGGGGGSCTTC
T ss_pred CCCCCE-EeCCCCCchhhccHHHhhccCce
Confidence 988875 88889999999999888887653
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=115.99 Aligned_cols=124 Identities=23% Similarity=0.203 Sum_probs=104.3
Q ss_pred CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394 60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (209)
Q Consensus 60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l 130 (209)
..|.|..+.|... ...++.|++++|.++.+. ..+..+++|++|+|++|.+++..|.. |.++
T Consensus 8 C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l 77 (193)
T 2wfh_A 8 CTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP------KELSNYKHLTLIDLSNNRISTLSNQS----FSNM 77 (193)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC------GGGGGCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred CEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH------HHhhcccCCCEEECCCCcCCEeCHhH----ccCC
Confidence 3477888888641 246899999999987543 45888999999999999999766666 9999
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
++|++|+|++|++++..|..|..+++|++|+|++|++++-.+..+..+.+|.. ..+.+|.+..
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~~~C 140 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH-LAIGANPLYC 140 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE-EECCSSCEEC
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE-EEeCCCCeec
Confidence 99999999999999888889999999999999999999654556888888875 7788888874
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=5.1e-16 Score=137.48 Aligned_cols=133 Identities=22% Similarity=0.218 Sum_probs=105.2
Q ss_pred CccccceEEcCC-----------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCC
Q 028394 61 CCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129 (209)
Q Consensus 61 ~C~W~gv~C~~~-----------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 129 (209)
.|.|.|+ |+.. ..+++.|++++|.++.+. +..+..+++|++|++++|.+++..|.. +.+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDA----FYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence 5899998 8631 137899999999987543 456888999999999999999877777 899
Q ss_pred CCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhH-HHHHHHH
Q 028394 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLE-VLIRDLA 204 (209)
Q Consensus 130 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p-~~~~~L~ 204 (209)
+++|++|++++|++++..|..++++++|++|++++|++++ .+|..++++.+|.. ..+.+|.+.+.+| ..+..++
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT-LRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE-EEEEESSSCCEECTTTTTTCC
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE-EECCCCccccccCHhhhhccc
Confidence 9999999999999998888889999999999999999987 57788888887764 5666666544443 3344333
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=1.2e-15 Score=136.49 Aligned_cols=121 Identities=21% Similarity=0.175 Sum_probs=79.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
..++.|||++|.++.+. +..|.++++|++|+|++|.+++..|.. |.++++|++|+|++|++++..|..|.+
T Consensus 52 ~~~~~LdLs~N~i~~l~-----~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCCCCCCCC-----HHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 46899999999998554 345677777777777777777544444 677777777777777777555556677
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHH
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLA 204 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~ 204 (209)
+++|++|+|++|++++-.|..++++++|.. ..+.+|.+++ .+|..++.++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~-L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCE-EECCSSCCCCCCCCGGGGGCT
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCe-eccccCccccCCCchhhccch
Confidence 777777777777776544445666666553 4555555543 3444444443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=5.8e-16 Score=134.09 Aligned_cols=131 Identities=22% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCCccccc--eEEcCCC--------CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC
Q 028394 59 SDCCQWER--VECNDTT--------GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS 128 (209)
Q Consensus 59 ~~~C~W~g--v~C~~~~--------~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 128 (209)
...|.|.+ |.|.... .+++.|+|++|.++.+. +..+.++++|++|++++|.+.+.+|+. .+.
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~ 76 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELN-----ETSFSRLQDLQFLKVEQQTPGLVIRNN---TFR 76 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEEC-----TTTTSSCTTCCEEECCCCSTTCEECTT---TTT
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCC-----hhHhccCccccEEECcCCcccceECcc---ccc
Confidence 34566666 8886521 46899999999887442 234555666666666666665555432 255
Q ss_pred CCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCC--CcccCCCCCCCccCCCCCchhhHH
Q 028394 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK--GKYASTLFPCPIFCGSYFTEQLEV 198 (209)
Q Consensus 129 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~--~~~l~~l~~~~~~~~n~~~~~~p~ 198 (209)
++++|++|++++|++++..|..++++++|++|++++|++++.+|.. ++.+.+|.. ..+.+|.+++..|.
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM-LVLRDNNIKKIQPA 147 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE-EECCSSBCCSCCCC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE-EECCCCccCccCcc
Confidence 5556666666666665555555555556666666666555544443 555555543 44555555544443
No 20
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=5.1e-15 Score=117.30 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=101.4
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+|++|.++.+. +..|..+++|++|+|++|.+++..|.. +..+++|++|+|++|++++..|..|..
T Consensus 57 ~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 127 (220)
T 2v70_A 57 PQLRKINFSNNKITDIE-----EGAFEGASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIG 127 (220)
T ss_dssp TTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred CCCCEEECCCCcCCEEC-----HHHhCCCCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCC
Confidence 57899999999987543 456888999999999999999776666 899999999999999999998999999
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..+
T Consensus 128 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~c~c~ 170 (220)
T 2v70_A 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLST-LNLLANPFNCNCY 170 (220)
T ss_dssp CTTCSEEECTTSCCCCBCTTTTTTCTTCCE-EECCSCCEECSGG
T ss_pred CccCCEEECCCCcCCEECHHHhcCCCCCCE-EEecCcCCcCCCc
Confidence 999999999999999988999999999885 8889999986543
No 21
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.7e-15 Score=111.36 Aligned_cols=121 Identities=23% Similarity=0.209 Sum_probs=101.8
Q ss_pred CcEEEEEcCCCCCC--cccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh
Q 028394 74 GRVIKLDLRDTRNW--ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151 (209)
Q Consensus 74 ~~v~~L~L~~~~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l 151 (209)
.+++.|+++++.+. .+ +..+..+++|++|++++|.+++. .. ++.+++|++|++++|++++.+|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKL------EGLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBC------CSCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred ccCeEEEccCCcCChhHH------HHHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHHh
Confidence 47889999999876 33 33578899999999999999865 44 8999999999999999998899999
Q ss_pred cCCCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhH---HHHHHHHhhh
Q 028394 152 GGLSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLE---VLIRDLARFL 207 (209)
Q Consensus 152 ~~l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p---~~~~~L~~~~ 207 (209)
+.+++|++|++++|++++ ..|..+..+.+|.. ..+.+|.+++..+ ..+..++++.
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS-LDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE-EECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE-EeCcCCcccchHHHHHHHHHHCCCcc
Confidence 999999999999999997 35688899999885 8888999987666 5677776653
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.58 E-value=2.1e-15 Score=135.08 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=73.4
Q ss_pred CcEEEEEcCCCCCCccccc-------------------ccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394 74 GRVIKLDLRDTRNWESAEW-------------------YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~ 134 (209)
.+++.|++++|.+..+... .+.+..|.++++|++|++++|.+++..|.. ++++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS----FSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS----STTCTTCC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh----cCCcccCC
Confidence 4688899998887643320 011223445555555555555555444444 55555555
Q ss_pred EEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+|++++|++++..|..++++++|++|++++|++++ .+|..++++++|.. ..+.+|.+++..|..++.++++
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH-VDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE-EECCSSCCCEECTTTTHHHHHC
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE-EEccCCcceecChhhhhhhhcc
Confidence 55555555554444555566666666666666654 55666666666654 5566666666656555555544
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=4e-16 Score=129.81 Aligned_cols=120 Identities=20% Similarity=0.260 Sum_probs=83.2
Q ss_pred CcEEEEEcCC-CCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 74 GRVIKLDLRD-TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~-~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
.+++.|++++ |.+... .+..+.++++|++|++++|.++|.+|.. +.++++|++|++++|++++.+|..++
T Consensus 76 ~~L~~L~L~~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGP-----IPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp TTCSEEEEEEETTEESC-----CCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred CCCCeeeCCCCCccccc-----CChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4678899984 665421 1334667777777777777777777776 77777777777777777777777777
Q ss_pred CCCCCCEEeccCCccccccCCCCcccC-CCCCCCccCCCCCchhhHHHHHHH
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYAS-TLFPCPIFCGSYFTEQLEVLIRDL 203 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~-~l~~~~~~~~n~~~~~~p~~~~~L 203 (209)
.+++|++|++++|+++|.+|..++++. .|. ...+.+|.+++.+|..+..+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~-~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFT-SMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCC-EEECCSSEEEEECCGGGGGC
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCc-EEECcCCeeeccCChHHhCC
Confidence 777777777777777777777777766 444 36666666666666555443
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=2.8e-16 Score=144.82 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=86.9
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|++|+|++|.|+ .+|.. ++++++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+ .||.+++++
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l 315 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL 315 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred hcCCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence 446788888888888888 78877 899999999999999999 88999999999999999999997 899999999
Q ss_pred CCCCCCCccCCCCCchhhHHHHHHHH
Q 028394 179 STLFPCPIFCGSYFTEQLEVLIRDLA 204 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~~~p~~~~~L~ 204 (209)
.+|.. +.+++|.+++.+|+.+..+.
T Consensus 316 ~~L~~-L~L~~N~l~~~~p~~~~~~~ 340 (727)
T 4b8c_D 316 CNLQF-LGVEGNPLEKQFLKILTEKS 340 (727)
T ss_dssp TTCCC-EECTTSCCCSHHHHHHHHHH
T ss_pred CCccE-EeCCCCccCCCChHHHhhcc
Confidence 99885 88999999999999987754
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=7.5e-15 Score=118.18 Aligned_cols=111 Identities=24% Similarity=0.264 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.|++++|.++.+ ++..+..+++|++|+|++|.+++..+.. +..+++|++|+|++|++++..|..++.+
T Consensus 84 ~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 84 ELGTLGLANNQLASL-----PLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp TCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCEEECCCCccccc-----ChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHcCcC
Confidence 455555555554422 2345678889999999999998655544 7899999999999999997777789999
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ 195 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~ 195 (209)
++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++.
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~c~ 194 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQT-ITLFGNQFDCS 194 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSCCBCTT
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCE-EEeeCCceeCC
Confidence 99999999999999877778888988875 88899999876
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1e-14 Score=134.37 Aligned_cols=167 Identities=18% Similarity=0.131 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhCCCCCC-CCCCCCCCCCCCCCccccceEEcC----------------CCCcEEEEEcCCCCCCcccc
Q 028394 29 EQERYALLQLRHFFNDDQC-LQNCWVDDENYSDCCQWERVECND----------------TTGRVIKLDLRDTRNWESAE 91 (209)
Q Consensus 29 ~~~~~aL~~~~~~~~~~~~-~l~~W~~~~~~~~~C~W~gv~C~~----------------~~~~v~~L~L~~~~l~~~~~ 91 (209)
..+++++++++.+.....+ ....|. ......+.|.++.+.. ....+..++|+.+.+..+..
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~ 208 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD 208 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCccc
Confidence 3456778887766542221 223452 2233345565543321 01234455555555432210
Q ss_pred ----cccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcc
Q 028394 92 ----WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167 (209)
Q Consensus 92 ----~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 167 (209)
+.+.+..+..++.|+.|+|++|.+. .+|.. +..+++|++|+|++|+++ .+|..|+++++|++|+|++|+|
T Consensus 209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 209 IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISAN----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -------------CCCCCCEEECTTSCCS-CCCGG----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccceecChhhhccCCCCcEEECCCCCCC-CCChh----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 1122444666677777777777776 56665 666777777777777777 6777777777777777777777
Q ss_pred ccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 168 IGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 168 ~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+ .||.+++++.+|.. +.+.+|.++ .||..|+.|+++
T Consensus 283 ~-~lp~~~~~l~~L~~-L~L~~N~l~-~lp~~~~~l~~L 318 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKY-FYFFDNMVT-TLPWEFGNLCNL 318 (727)
T ss_dssp S-SCCSSGGGGTTCSE-EECCSSCCC-CCCSSTTSCTTC
T ss_pred C-ccChhhcCCCCCCE-EECCCCCCC-ccChhhhcCCCc
Confidence 7 67777777777664 666666665 566656655554
No 27
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=9e-15 Score=113.46 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=101.1
Q ss_pred EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (209)
Q Consensus 77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 156 (209)
+.+++++++++.++. .+. .++++|++++|.+++..+.. .+..+++|++|+|++|++++..|..|+++++
T Consensus 11 ~~l~~s~~~l~~ip~------~~~--~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR------DIP--LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCS------CCC--TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCcc------CCC--CCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 578999999876543 222 38999999999998765542 1789999999999999999999999999999
Q ss_pred CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
|++|+|++|++++..|..+..+.+|.. ..+.+|.+++.+|+.+..++++.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKT-LNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCE-EECCSSCCCEECTTSSTTCTTCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCE-EECCCCcCCeeCHHHhhcCCCCC
Confidence 999999999999988888999999885 88999999998888877766553
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=7.7e-15 Score=123.57 Aligned_cols=135 Identities=27% Similarity=0.252 Sum_probs=100.4
Q ss_pred CCCCccccceEEcCC-----------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchh
Q 028394 58 YSDCCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126 (209)
Q Consensus 58 ~~~~C~W~gv~C~~~-----------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 126 (209)
...+|.|.|+ |+.. ..+++.|++++|.++.+. +..+.++++|++|++++|.+++..|..
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~---- 95 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDS---- 95 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccC-----HHHhccCCCCCEEECCCCccCccCHhh----
Confidence 4677899988 7531 237899999999987543 346788999999999999999776776
Q ss_pred cCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC--CCcccCCCCCCCccCCCC-CchhhHHHHHHH
Q 028394 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSY-FTEQLEVLIRDL 203 (209)
Q Consensus 127 ~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~-~~~~~p~~~~~L 203 (209)
+.++++|++|++++|++++..+..++++++|++|++++|+++ .+|. .+.++.+|.. ..+.+|+ +++..|..+..+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI-LRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE-EEEEESSSCCEECTTTTTTC
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE-EECCCCccccccCHHHccCC
Confidence 889999999999999998665566889999999999999998 5665 6777777764 5555553 333334444443
Q ss_pred H
Q 028394 204 A 204 (209)
Q Consensus 204 ~ 204 (209)
+
T Consensus 174 ~ 174 (353)
T 2z80_A 174 T 174 (353)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.4e-14 Score=117.97 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=55.3
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..++.+++|++|++++|++++..|..+.++
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence 445555555555555555433333 4566666666666666665555555666666666666666666555555666
Q ss_pred CCCCCCCccCCCCCchhhH
Q 028394 179 STLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~~~p 197 (209)
.+|.. ..+.+|.+.+..|
T Consensus 205 ~~L~~-L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 205 TSLQY-IWLHDNPWDCTCP 222 (272)
T ss_dssp TTCCE-EECCSSCBCCCTT
T ss_pred cCCCE-EEccCCCccccCc
Confidence 66553 5566666666554
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=1.8e-14 Score=117.20 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=71.5
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCCc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGK 176 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~~ 176 (209)
.+..+++|++|++++|.+++..|.. +.++++|++|++++|++++..+..++++++|++|++++|++++ .+|..+.
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred HccCCcCCCEEECCCCccCccChhh----hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 4555666666666666666555454 6677777777777777776555567777777777777777775 4677777
Q ss_pred ccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 177 YASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 177 ~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++++|.. ..+.+|.+++..+..+..++++
T Consensus 147 ~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 147 NLTNLEH-LDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp GCTTCCE-EECCSSCCCEECGGGGHHHHTC
T ss_pred cCCCCCE-EECCCCCCCcCCHHHhhhhhhc
Confidence 7777764 6777787777666666666554
No 31
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=8.4e-14 Score=106.54 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=86.8
Q ss_pred EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (209)
Q Consensus 77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 156 (209)
+.++++++.+..++. .+ .++|++|+|++|.+++..|.. +.++++|++|+|++|++++..+..|.++++
T Consensus 15 ~~l~~~~n~l~~iP~------~~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA------GI--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCccCC------Cc--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 468888888875532 22 278999999999999877777 899999999999999999766666789999
Q ss_pred CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394 157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ 195 (209)
Q Consensus 157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~ 195 (209)
|++|+|++|+|++-.|..+..+.+|.. ..+.+|.+...
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~-L~L~~N~~~c~ 120 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTH-IYLYNNPWDCE 120 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSE-EECCSSCBCTT
T ss_pred hhEEECCCCccceeCHHHhccccCCCE-EEeCCCCcccc
Confidence 999999999999644445888888875 78889988854
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=1.5e-14 Score=109.36 Aligned_cols=120 Identities=23% Similarity=0.193 Sum_probs=86.3
Q ss_pred CcEEEEEcCCCCCC--cccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh
Q 028394 74 GRVIKLDLRDTRNW--ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151 (209)
Q Consensus 74 ~~v~~L~L~~~~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l 151 (209)
.+++.|+++++.+. .+ +..+..+++|++|++++|.+++. .. +..+++|++|++++|++++.+|..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i------~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKI------EGLTAEFVNLEFLSLINVGLISV--SN----LPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TSCSEEECCSCBCBTTBC------SSCCGGGGGCCEEEEESSCCCCC--SS----CCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred ccCCEEECCCCCCChhhH------HHHHHhCCCCCEEeCcCCCCCCh--hh----hccCCCCCEEECcCCcCchHHHHHH
Confidence 46788888888765 33 23366788888888888888754 44 7888888888888888887778777
Q ss_pred cCCCCCCEEeccCCccccc-cCCCCcccCCCCCCCccCCCCCchhhH---HHHHHHHhh
Q 028394 152 GGLSSLRNLSLIGNRLIGS-IDIKGKYASTLFPCPIFCGSYFTEQLE---VLIRDLARF 206 (209)
Q Consensus 152 ~~l~~L~~L~L~~N~l~G~-iP~~~~~l~~l~~~~~~~~n~~~~~~p---~~~~~L~~~ 206 (209)
.++++|++|++++|++++- .+..+..+.+|.. ..+.+|.+++..+ ..+..++++
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~-L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS-LDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE-EECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCE-EEeeCCcCcchHHHHHHHHHhCccC
Confidence 7788888888888888752 2266777777764 6777887776554 355544443
No 33
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.1e-13 Score=105.45 Aligned_cols=105 Identities=20% Similarity=0.109 Sum_probs=74.0
Q ss_pred EEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCC
Q 028394 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157 (209)
Q Consensus 78 ~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L 157 (209)
.++++++.++.++. .+ .++|++|+|++|.+++..|.. +.++++|++|+|++|++++..|..|.++++|
T Consensus 13 ~l~~s~n~l~~ip~------~~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 13 TVDCSGKSLASVPT------GI--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp EEECTTSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEeCCCCcCccCc------cC--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 45555666654432 12 267788888888888766666 7788888888888888886666667788888
Q ss_pred CEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394 158 RNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ 195 (209)
Q Consensus 158 ~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~ 195 (209)
++|+|++|+|++-.|..+.++.+|.. ..+.+|.++..
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~~~c~ 117 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTH-IWLLNNPWDCA 117 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCBCTT
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCE-EEeCCCCCCCC
Confidence 88888888888655556777777764 67777777644
No 34
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=7.2e-14 Score=110.62 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+|++|.+..+. +..|..+++|++|+|++|.+++ +|.. .+..+++|++|+|++|++++..|..|..
T Consensus 56 ~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 126 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELA-----PDAFQGLRSLNSLVLYGNKITE-LPKS---LFEGLFSLQLLLLNANKINCLRVDAFQD 126 (220)
T ss_dssp TTCCEEECCSSCCCEEC-----TTTTTTCSSCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECCCCcCCCcC-----HHHhhCCcCCCEEECCCCcCCc-cCHh---HccCCCCCCEEECCCCCCCEeCHHHcCC
Confidence 57899999999987543 4568899999999999999994 5544 2688999999999999999998999999
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+..
T Consensus 127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~~~c 166 (220)
T 2v9t_B 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQT-MHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSSCEEC
T ss_pred CCCCCEEECCCCcCCEECHHHHhCCCCCCE-EEeCCCCcCC
Confidence 999999999999999877777888888875 7788888874
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=3.3e-14 Score=120.46 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=57.0
Q ss_pred ccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCcccc-CCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394 62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131 (209)
Q Consensus 62 C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~ 131 (209)
|.+..+.|... ...++.|+|++|.++.+.. ..+. .+++|++|+|++|.+++..|.. +.+++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~-----~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~ 88 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRA-----EWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVP 88 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECT-----TSSSSCCTTCCEEECCSSCCCEECTTT----TTTCT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccCh-----hhhhhcccccCEEECCCCcCCccChhh----ccCCC
Confidence 67888888641 1347789999998865432 2233 4555555555555555433333 44444
Q ss_pred CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCC
Q 028394 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTL 181 (209)
Q Consensus 132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l 181 (209)
+|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+.+|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 44444444444443333344444444444444444444334444433333
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=7.4e-14 Score=106.33 Aligned_cols=103 Identities=21% Similarity=0.262 Sum_probs=86.9
Q ss_pred CccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394 61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131 (209)
Q Consensus 61 ~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~ 131 (209)
.|.|..+.|... ...++.|+|++|.++.+. +..|..+++|++|+|++|++++..|.. +..++
T Consensus 8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~ 78 (170)
T 3g39_A 8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLT 78 (170)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccC-----hhhhcCcccCCEEECCCCCcCccChhh----ccCCC
Confidence 378999999641 246889999999988543 456888999999999999999655544 78999
Q ss_pred CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccC
Q 028394 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID 172 (209)
Q Consensus 132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP 172 (209)
+|++|+|++|++++..|..|.++++|++|+|++|.+++..+
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999999999997777789999999999999999987654
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=2.4e-14 Score=116.56 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=90.5
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.|++++|.++.+ ++..+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..++.+
T Consensus 86 ~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 156 (272)
T 3rfs_A 86 NLTYLILTGNQLQSL-----PNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVFDKL 156 (272)
T ss_dssp TCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECCCCccCcc-----ChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHhccC
Confidence 455556665555432 2344677888888888888888665555 7888888888888888887777777888
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++|++|++++|++++..|..++.+.+|.. ..+.+|.+++..|..+..++++
T Consensus 157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKD-LRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTTC
T ss_pred ccCCEEECCCCCcCccCHHHhcCCccCCE-EECCCCcCCccCHHHHhCCcCC
Confidence 88899999888888766666778888775 7788888888777666655554
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=8.8e-14 Score=108.66 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=89.9
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.++.+ ++..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+..
T Consensus 76 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSL-----PNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp TTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CCcCEEECCCCcCCcc-----CHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHhcc
Confidence 4577777777776633 2445788999999999999999765555 789999999999999999777777899
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHH
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLA 204 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~ 204 (209)
+++|++|++++|.+.+..|. +. ......|.++|.+|..++.+.
T Consensus 147 l~~L~~L~l~~N~~~~~~~~-------l~-~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDCTCPG-------IR-YLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CTTCCEEECCSCCBCCCTTT-------TH-HHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCccEEEecCCCeecCCCC-------HH-HHHHHHHhCCceeeccCcccc
Confidence 99999999999999987763 22 244567778888887666554
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=3.8e-14 Score=126.61 Aligned_cols=123 Identities=17% Similarity=0.140 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+|++|.++.+. +..|.++++|++|+|++|++++..|.. |.++++|++|+|++|++++..|..|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~-----~~~f~~L~~L~~L~Ls~N~l~~l~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTCCEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECGGG----GTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred CCCCEEECCCCcCCCcC-----hhHhcCCCCCCEEEccCCcCCCCCHHH----hcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 46889999999987543 456889999999999999999654445 899999999999999999777778999
Q ss_pred CCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 154 LSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+++|++|++++|++++ .+|..++.+++|.. ..+.+|.+++-.|..+..|+++
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEH-LDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCE-EECCSSCCCEECGGGGHHHHTC
T ss_pred CcccCeeccccCccccCCCchhhccchhhhh-hcccCccccccccccccchhhh
Confidence 9999999999999975 67889999999885 8889999999888888887764
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=5.6e-14 Score=114.78 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=69.1
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~ 176 (209)
..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred hHhhCCcCCCEEECCCCcccccCHhH----hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 34556666777777777666444444 66677777777777777755555577777777777777777777677777
Q ss_pred ccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 177 YASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 177 ~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++.+|.. ..+.+|.+++..+..+..++++
T Consensus 199 ~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 199 DLGRLMT-LYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TCTTCCE-EECCSSCCSCCCHHHHTTCTTC
T ss_pred CcccccE-eeCCCCcCCcCCHHHcccCccc
Confidence 7777664 6666777776655556555543
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=7.4e-15 Score=121.14 Aligned_cols=138 Identities=18% Similarity=0.213 Sum_probs=87.5
Q ss_pred CCCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceecc------------
Q 028394 59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG------------ 117 (209)
Q Consensus 59 ~~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g------------ 117 (209)
...|.|.+|.|... ..+++.|+++++.++.+. ...+..+++|++|++++|.++.
T Consensus 4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccC-----HhHhhccccCCEEECCCCccCcccCccccccccc
Confidence 34489999999751 147899999999887543 2334556666666666665542
Q ss_pred -------------ccCCCcchhcCCCCCCcEEecccCCCCCcch-hhhcCCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394 118 -------------CVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP 183 (209)
Q Consensus 118 -------------~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~ 183 (209)
.+|.. +..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|..+..+.+|..
T Consensus 79 ~L~~L~Ls~n~i~~l~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CCCEEECCSCSEEEEEEE----EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccCEEECCCCccccChhh----cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 23333 5666666777777776664433 45666777777777777777666666666666664
Q ss_pred CCccCCCCCch-hhHHHHHHHHhh
Q 028394 184 CPIFCGSYFTE-QLEVLIRDLARF 206 (209)
Q Consensus 184 ~~~~~~n~~~~-~~p~~~~~L~~~ 206 (209)
..+.+|.+++ .+|..+..++++
T Consensus 155 -L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 155 -LKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp -EECTTCEEGGGEECSCCTTCTTC
T ss_pred -EECCCCccccccchhHHhhCcCC
Confidence 6666776665 455555544443
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=124.91 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=64.6
Q ss_pred ccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394 64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (209)
Q Consensus 64 W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~ 134 (209)
|..|.|... ..+++.|+|++|.++.+. +..|..+++|++|+|++|.+++..|.. +.++++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLR 83 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC-----HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCC
Confidence 677888641 246788999999887543 234555666666666666666555554 55555555
Q ss_pred EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCC
Q 028394 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLF 182 (209)
Q Consensus 135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~ 182 (209)
+|+|++|++++..+..|+++++|++|+|++|++++..|..+.++.+|.
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 555555555543333455555555555555555555555554444443
No 43
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.3e-13 Score=109.65 Aligned_cols=113 Identities=20% Similarity=0.168 Sum_probs=97.2
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+|++|.+..+. +..+..+++|++|+|++|.+++..+.. +..+++|++|+|++|+++ .+|..+..
T Consensus 64 ~~L~~L~L~~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 133 (229)
T 3e6j_A 64 INLKELYLGSNQLGALP-----VGVFDSLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIER 133 (229)
T ss_dssp TTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-SCCTTGGG
T ss_pred cCCcEEECCCCCCCCcC-----hhhcccCCCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-ccCccccc
Confidence 57999999999987543 456788999999999999999655555 789999999999999999 88999999
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
+++|++|+|++|++++-.+..+..+.+|.. ..+.+|.+....+
T Consensus 134 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTH-AYLFGNPWDCECR 176 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECTTSCBCTTBG
T ss_pred CCCCCEEECCCCcCCccCHHHHhCCCCCCE-EEeeCCCccCCcc
Confidence 999999999999999665667888888875 7888999986543
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=3.8e-14 Score=115.80 Aligned_cols=116 Identities=22% Similarity=0.163 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCC---------------------cchhcCCCCC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE---------------------GLDTLSRLNN 132 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~---------------------~~~~~~~l~~ 132 (209)
.+++.|+++++.+..+. +..+..+++|++|++++|.+++..|.. .+..+..+++
T Consensus 32 ~~l~~L~l~~n~i~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVP-----AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TTCSEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCcCCccC-----HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 35677777777765432 223444445555555555544433333 0001444555
Q ss_pred CcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394 133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ 195 (209)
Q Consensus 133 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~ 195 (209)
|++|++++|++++..|..+.++++|++|++++|++++..+..+.++.+|.. ..+.+|.+++.
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~ 168 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH-LFLHGNRISSV 168 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCEE
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE-EECCCCccccc
Confidence 555555555555444444555555555555555555433333444554443 44455555543
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=5.2e-14 Score=126.07 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=57.5
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhcCCCCCCEEeccCCccccccCCCC
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~ 175 (209)
..+.++++|++|++++|.+++..|.. ++++++|++|++++|++++ .+|..++++++|++|++++|++++..|..+
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSC----CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred hhcCCcccCCEEEccCCccccccccc----cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 44566666666666666666544444 6666666666666666664 456666666666666666666666666666
Q ss_pred cccCCCCC---CCccCCCCCch
Q 028394 176 KYASTLFP---CPIFCGSYFTE 194 (209)
Q Consensus 176 ~~l~~l~~---~~~~~~n~~~~ 194 (209)
+.+.++.. ...+.+|.+++
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCCCE
T ss_pred hhhhccccccceeeccCCCcce
Confidence 55554421 24455555553
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.47 E-value=4e-15 Score=134.97 Aligned_cols=127 Identities=8% Similarity=0.052 Sum_probs=104.8
Q ss_pred CCcEEEEEcCCCCCCcc--cccc----------cCCcccc--CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEec
Q 028394 73 TGRVIKLDLRDTRNWES--AEWY----------MNASLFT--PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138 (209)
Q Consensus 73 ~~~v~~L~L~~~~l~~~--~~~~----------~~~~~~~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~L 138 (209)
-.+++.|+|++|.++.. .... .-+..++ ++++|++|++++|.+.|.+|.. ++++++|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEEC
Confidence 35789999999998741 0000 0145577 8999999999999999999988 999999999999
Q ss_pred ccCC-CCC-cchhhhcCC------CCCCEEeccCCccccccCC--CCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 139 DYNH-FNN-SIFSSLGGL------SSLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 139 s~N~-l~g-~iP~~l~~l------~~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++|+ ++| .+|..++++ ++|++|++++|+++ .||. .++++++|.. ..+.+|.++|.+| .++.++++
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~-L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM-LECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE-EECCSCCCEEECC-CCEEEEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE-EeCcCCcCccchh-hhCCCCCC
Confidence 9998 999 899998887 89999999999999 8999 8999998885 7888999998888 55544443
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=1e-13 Score=112.73 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=92.1
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.++.|++++|.++.++ +..+.++++|++|++++|.+++..+.. +..+++|++|++++|++++..|..+.++
T Consensus 29 ~l~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TCCEEECTTCCCCEEC-----TTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CccEEECCCCcccccC-----HhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCC
Confidence 5788888888876543 335677888888888888887655555 7888888888888888887777778888
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHHhh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLARF 206 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~~~ 206 (209)
++|++|++++|++++..+..++++.+|.. ..+.+|.+++ .+|..+..++++
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCE-EECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCE-EECcCCccceecCchhhccCCCC
Confidence 88888888888888766667777877775 7777787776 567766666554
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=4.8e-14 Score=122.01 Aligned_cols=113 Identities=21% Similarity=0.164 Sum_probs=79.9
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.|++++|.+..+ .+..+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..++++
T Consensus 300 ~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 300 DLEQLTLAQNEINKI-----DDNAFWGLTHLLKLNLSQNFLGSIDSRM----FENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECGGG----GTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCEEECCCCccccc-----ChhHhcCcccCCEEECCCCccCCcChhH----hcCcccCCEEECCCCcccccChhhcccc
Confidence 455555555555422 2334666777778888877777655655 7778888888888888887777778888
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
++|++|++++|++++..|..+..+++|.. ..+.+|.+++.+|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQK-IWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccE-EEccCCCcccCCC
Confidence 88888888888888644445577777764 7778888887776
No 49
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=2e-13 Score=114.55 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=84.2
Q ss_pred ccccceEEcCCCCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecc
Q 028394 62 CQWERVECNDTTGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLD 139 (209)
Q Consensus 62 C~W~gv~C~~~~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls 139 (209)
|.|..|.|.. + +++.+ |. +..+++|+.|+|++ |.+++..|.. |.++++|++|+|+
T Consensus 8 C~~~~v~~~~------------~n~l~~i------p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~ 64 (347)
T 2ifg_A 8 HGSSGLRCTR------------DGALDSL------HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIV 64 (347)
T ss_dssp SSSSCEECCS------------SCCCTTT------TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECC
T ss_pred ccCCEEEcCC------------CCCCCcc------CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECC
Confidence 8887777753 3 44433 33 77788999999996 9998766666 8999999999999
Q ss_pred cCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 140 YNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 140 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+|+|++..|..|+++++|++|+|++|+|++ +|........|. ...+.+|.+..
T Consensus 65 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~L~-~l~l~~N~~~c 117 (347)
T 2ifg_A 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQ-ELVLSGNPLHC 117 (347)
T ss_dssp SSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCC-EEECCSSCCCC
T ss_pred CCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCCce-EEEeeCCCccC
Confidence 999999888899999999999999999995 555443333354 37777888874
No 50
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=5.8e-14 Score=125.99 Aligned_cols=108 Identities=20% Similarity=0.147 Sum_probs=96.8
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.++.|+|++|.++.++ . ++.+++|+.|+|++|.++ .+|.. ++.+++|++|+|++|++++ +| .++.+
T Consensus 442 ~L~~L~Ls~n~l~~lp------~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC------H-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSSCC------C-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred CceEEEecCCCCCCCc------C-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 4778999999988542 3 788999999999999999 88987 9999999999999999996 78 89999
Q ss_pred CCCCEEeccCCcccccc-CCCCcccCCCCCCCccCCCCCchhhH
Q 028394 155 SSLRNLSLIGNRLIGSI-DIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~i-P~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
++|++|+|++|++++.+ |..++.+++|.. ..+++|.+++.+|
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~-L~L~~N~l~~~~~ 550 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVL-LNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCE-EECTTSGGGGSSS
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCE-EEecCCcCCCCcc
Confidence 99999999999999887 999999999885 8899999987654
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=2.1e-14 Score=129.23 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=51.4
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY 177 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~ 177 (209)
.+..+++|++|+|++|.+++..|.. ++++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..++.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 3455555666666666555544443 555666666666666665433333456666666666666666555555555
Q ss_pred cCCCCCCCccCCCCCch
Q 028394 178 ASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 178 l~~l~~~~~~~~n~~~~ 194 (209)
+++|.. ..+.+|.+++
T Consensus 170 l~~L~~-L~L~~N~l~~ 185 (597)
T 3oja_B 170 TTSLQN-LQLSSNRLTH 185 (597)
T ss_dssp CTTCCE-EECTTSCCSB
T ss_pred CCcCcE-EECcCCCCCC
Confidence 555553 4555555554
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.45 E-value=3.6e-14 Score=132.46 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=85.9
Q ss_pred ccccceEEcCCCCcEEEEEcCCCCCCccccc--------------------ccCCccccCCCCCCEEEccCceeccccCC
Q 028394 62 CQWERVECNDTTGRVIKLDLRDTRNWESAEW--------------------YMNASLFTPFQQLESLYLIGNNIAGCVEN 121 (209)
Q Consensus 62 C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~--------------------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~ 121 (209)
|.|..|.+ ...+++.|+|++|.++.+.+. .+++..|.++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34555555 246788888888877643210 12234466666677777777776666566
Q ss_pred CcchhcCCCCCCcEEecccCCCCCcchhh--hcCCCCCCEEeccCCccccccC-CCCcccCCCCCCCccCCCCCchhhHH
Q 028394 122 EGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LGGLSSLRNLSLIGNRLIGSID-IKGKYASTLFPCPIFCGSYFTEQLEV 198 (209)
Q Consensus 122 ~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~L~~N~l~G~iP-~~~~~l~~l~~~~~~~~n~~~~~~p~ 198 (209)
. +.++++|++|+|++|++++.+|.. ++++++|++|+|++|.+++..| ..++++++|.. ..+.+|.+++..|+
T Consensus 92 ~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~-L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 92 A----FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS-IDFSSNQIFLVCEH 166 (844)
T ss_dssp S----SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE-EEEESSCCCCCCSG
T ss_pred H----ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE-EECCCCcCCeeCHH
Confidence 5 677777777777777777655554 6677777777777777766544 35666776664 66667777766666
Q ss_pred HHHHH
Q 028394 199 LIRDL 203 (209)
Q Consensus 199 ~~~~L 203 (209)
.+..+
T Consensus 167 ~l~~l 171 (844)
T 3j0a_A 167 ELEPL 171 (844)
T ss_dssp GGHHH
T ss_pred Hcccc
Confidence 66555
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=7.2e-14 Score=108.51 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=87.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+ +.+..+++|++|++++|.+++..|.. ++.+++|++|++++|++++..|..++.
T Consensus 66 ~~L~~L~l~~n~~~~~-------~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 66 HNIKDLTINNIHATNY-------NPISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp TTCSEEEEESCCCSCC-------GGGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred CCCCEEEccCCCCCcc-------hhhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 3677788887765533 24677899999999999998877877 889999999999999999888888999
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+++|++|++++|++.+.+| .+..+.+|.. ..+++|.+++
T Consensus 135 l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~-L~l~~n~i~~ 173 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM-PLKTLPELKS-LNIQFDGVHD 173 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG-GGGGCSSCCE-EECTTBCCCC
T ss_pred CCCCCEEEccCCCCccccH-hhcCCCCCCE-EECCCCCCcC
Confidence 9999999999998555777 5778888775 7777887775
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=1.1e-13 Score=120.44 Aligned_cols=118 Identities=21% Similarity=0.138 Sum_probs=91.3
Q ss_pred ccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394 64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (209)
Q Consensus 64 W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~ 134 (209)
|..|.|... ..+++.|+|++|.+..+. +..|.++++|++|+|++|.+++..|.. +.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ-----ADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceEC-----HHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence 567888641 246899999999987543 456888999999999999998776676 88999999
Q ss_pred EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCC
Q 028394 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY 191 (209)
Q Consensus 135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~ 191 (209)
+|+|++|++++..+..++.+++|++|+|++|++++-.+..+.++.+|.. ..+.+|+
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~~~ 182 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR-LDLGELK 182 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE-EECCCCT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE-EeCCCCC
Confidence 9999999999776677888999999999999998554446666666654 4444433
No 55
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.4e-13 Score=104.99 Aligned_cols=105 Identities=20% Similarity=0.113 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCC-CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
..++.|++++|.++.+.. +..+. +|++|++++|.+++. +. +..+++|++|++++|++++..|..++
T Consensus 19 ~~L~~L~l~~n~l~~i~~-------~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CCceEEEeeCCCCchhHH-------hhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchhh
Confidence 356777777776664321 23333 677777777777653 33 67777777777777777744334446
Q ss_pred CCCCCCEEeccCCccccccCC--CCcccCCCCCCCccCCCCCc
Q 028394 153 GLSSLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~~~ 193 (209)
.+++|++|++++|+++ .+|. .+..+.+|.. ..+.+|.++
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~-L~l~~N~i~ 126 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTY-LCILRNPVT 126 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE-EECCSSGGG
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE-EEecCCCCC
Confidence 7777777777777773 5665 5666666653 666666665
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=119.92 Aligned_cols=118 Identities=20% Similarity=0.124 Sum_probs=85.4
Q ss_pred ccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394 64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (209)
Q Consensus 64 W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~ 134 (209)
|..|.|... ...++.|+|++|.+..+. +..|.++++|++|+|++|.+++..|.. +.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK-----VNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEEC-----TTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeC-----HHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCC
Confidence 567888641 246788999999887543 345778888888888888888655555 78888888
Q ss_pred EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCC
Q 028394 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY 191 (209)
Q Consensus 135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~ 191 (209)
+|+|++|++++..+..|..+++|++|+|++|++++-.+..+.++.+|.. ..+.+|+
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~-L~l~~~~ 171 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR-LDLGELK 171 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE-EECCCCT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE-eCCCCCC
Confidence 8888888888666667888888888888888887555556666666654 4444433
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.44 E-value=9.3e-14 Score=124.43 Aligned_cols=123 Identities=16% Similarity=0.028 Sum_probs=68.9
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
..++.|++++|.++.+. +..|.++++|++|++++|.+++..|.. |.++++|++|++++|++++..|..+++
T Consensus 33 ~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQ-----NTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCEEECTTCCCSEEC-----TTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCcEEEccCCccCcCC-----hhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhcc
Confidence 46889999999887543 234555555555555555555444444 555555555555555555444444444
Q ss_pred CCCCCEEeccCCccccccCCCCcc------------------------cCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKY------------------------ASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~------------------------l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+++|++|++++|++++-.|..+++ +.+|.. ..+.+|.+++..|+.++.++++
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV-LDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE-EECCSSCCCEECHHHHHTTTTC
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE-EEcccCcccccChhhhhhhccc
Confidence 444444444444444332333333 444443 5566777777667777776654
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=1.7e-13 Score=111.34 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=58.1
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..+..++.+++|++|++++|++++..|..+..+
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRV----FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cccccCCCEEECCCCccCeeCHHH----hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 445555666666666655444433 5666666666666666665444456666666666666666665444445566
Q ss_pred CCCCCCCccCCCCCchhhHHHHHHHH
Q 028394 179 STLFPCPIFCGSYFTEQLEVLIRDLA 204 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~~~p~~~~~L~ 204 (209)
.+|.. ..+.+|.+++-.+..+..++
T Consensus 181 ~~L~~-L~L~~N~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 181 TELKT-LKLDNNQLKRVPEGAFDSLE 205 (270)
T ss_dssp TTCCE-EECCSSCCSCCCTTTTTTCT
T ss_pred CCcCE-EECCCCcCCcCCHHHhcccc
Confidence 66553 55666666654443344333
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.43 E-value=6.5e-14 Score=111.70 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=84.9
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCce-eccccCCCcchhcCCCCCCcEEeccc-CCCCCcchhhh
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSL 151 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~l~~L~~L~Ls~-N~l~g~iP~~l 151 (209)
..++.|++++|.++.+. +..+..+++|++|++++|. +++..+.. +.++++|++|++++ |++++..|..|
T Consensus 31 ~~l~~L~l~~n~l~~i~-----~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-----SHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESCCCSEEC-----TTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCCcceEEC-----HHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 47899999999987543 3457778889999999887 76433334 78888888888888 88886666678
Q ss_pred cCCCCCCEEeccCCccccccCCCCcccCCCCC--CCccCCC-CCchhhHHHHHHHH
Q 028394 152 GGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP--CPIFCGS-YFTEQLEVLIRDLA 204 (209)
Q Consensus 152 ~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~--~~~~~~n-~~~~~~p~~~~~L~ 204 (209)
.++++|++|++++|++++ +|. +..+.++.. ...+.+| .+++-.+..+..++
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 888888888888888886 776 666666541 2555566 55543333344333
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=4.1e-13 Score=113.67 Aligned_cols=122 Identities=18% Similarity=0.134 Sum_probs=98.9
Q ss_pred CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
-.+++.|+|++|.+..+. +..|..+++|++|+|++|.+++..+.. +..+++|++|+|++|++++..|..|.
T Consensus 63 l~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~ 133 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFIS-----SEAFVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFE 133 (361)
T ss_dssp CTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccccCEEECCCCcCCccC-----hhhccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhC
Confidence 357899999999987543 456888999999999999998665555 88999999999999999988888999
Q ss_pred CCCCCCEEeccCCccccccCCCC----cccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKG----KYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~----~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
++++|++|+|++|++++ +|... ..+.+|.. ..+.+|.+++-.+..+..+..
T Consensus 134 ~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~-L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLML-LDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp TCTTCCEEECCSSCCCS-CCGGGTC----CTTCCE-EECCSSCCCCCCHHHHHHSCH
T ss_pred CcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCE-EECCCCCCCccCHHHhhhccH
Confidence 99999999999999995 67654 45777764 778888888766666666654
No 61
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=106.34 Aligned_cols=116 Identities=21% Similarity=0.140 Sum_probs=97.5
Q ss_pred EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (209)
Q Consensus 77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 156 (209)
+.++++++.++.++. .+ .++|+.|++++|.++ .+|.. +..+++|++|+|++|++++..|..|.++++
T Consensus 13 ~~l~~~~~~l~~ip~------~~--~~~l~~L~L~~n~i~-~ip~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK------GI--PRDVTELYLDGNQFT-LVPKE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTTSCCSSCCS------CC--CTTCCEEECCSSCCC-SCCGG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEcCCCCCCcCCC------CC--CCCCCEEECCCCcCc-hhHHH----hhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 368999999886543 12 258999999999998 78876 999999999999999999888889999999
Q ss_pred CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
|++|+|++|++++..|..+..+.+|.. ..+.+|.++.-.+..+..++++
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRL-LSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCE-EECCSSCCCBCCTTTTTTCTTC
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCE-EECCCCCCCeeChhhhhcCccc
Confidence 999999999999888888999999885 8888999986555556555544
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.42 E-value=6.2e-14 Score=127.29 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=83.7
Q ss_pred CcEEEEEcCCCCCCccccc-------------------ccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394 74 GRVIKLDLRDTRNWESAEW-------------------YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~ 134 (209)
.+++.|++++|.+..+... .+.+..+.++++|++|++++|.+++..+.. ++++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh----hccCCCCC
Confidence 4677888888776543321 011233455666667777666666332223 77778888
Q ss_pred EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIR 201 (209)
Q Consensus 135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~ 201 (209)
+|++++|++++..|..|+++++|++|++++|.+++..|..++++++|.. ..+.+|.+++..+..+.
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE-LLLSNNKIQALKSEELD 166 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE-EECCSSCCCCBCHHHHG
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE-EEccCCcccccCHHHhh
Confidence 8888888887666677788888888888888888777777777777775 67778888777666554
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=4.3e-13 Score=118.09 Aligned_cols=98 Identities=21% Similarity=0.169 Sum_probs=75.4
Q ss_pred CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST 180 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~ 180 (209)
.+++|+.|+|++|.+++. |. ...+++|++|+|++|++++ +|+.++.+++|+.|+|++|.+++ +|..+..+.+
T Consensus 167 ~l~~L~~L~Ls~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred hCCcccEEecCCCccccc-cc-----cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 456666666666666643 22 3458889999999999986 45558899999999999999995 8998888888
Q ss_pred CCCCCccCCCCCc-hhhHHHHHHHHhhh
Q 028394 181 LFPCPIFCGSYFT-EQLEVLIRDLARFL 207 (209)
Q Consensus 181 l~~~~~~~~n~~~-~~~p~~~~~L~~~~ 207 (209)
|.. ..+.+|.+. +.+|..+..++.+.
T Consensus 239 L~~-L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 239 LEH-FDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CCE-EECTTCCBCHHHHHHHHTTCHHHH
T ss_pred CCE-EEcCCCCCcCcchHHHHHhCCCCc
Confidence 875 788899998 78888887666543
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=4.8e-14 Score=120.12 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=50.3
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY 177 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~ 177 (209)
.+..+++|++|++++|.+++..|.. ++++++|++|++++|+++...+..++++++|++|++++|++++..|..+..
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 163 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS
T ss_pred hccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC
Confidence 3455555566666665555444444 555666666666666665322223455666666666666666555555555
Q ss_pred cCCCCCCCccCCCCCch
Q 028394 178 ASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 178 l~~l~~~~~~~~n~~~~ 194 (209)
+++|.. ..+.+|.+++
T Consensus 164 l~~L~~-L~l~~n~l~~ 179 (390)
T 3o6n_A 164 TTSLQN-LQLSSNRLTH 179 (390)
T ss_dssp CTTCCE-EECCSSCCSB
T ss_pred CCCCCE-EECCCCcCCc
Confidence 555553 4555555553
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=3.7e-13 Score=120.55 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=83.5
Q ss_pred ccccCCCCCCEEEccCceeccc-cC--CCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC
Q 028394 97 SLFTPFQQLESLYLIGNNIAGC-VE--NEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI 173 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~-ip--~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~ 173 (209)
..+..+++|++|++++|.+++. +| .. +..+++|++|++++|++++..|..++++++|++|++++|++++.+|.
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNS----LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCG----GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchh----hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 4466778888888888888763 22 33 77888888888888888888888888888899999999998888888
Q ss_pred CCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 174 KGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 174 ~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
.+.++..+ ...+++|.+++.+|+.+..++++.
T Consensus 519 ~l~~l~~L--~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 519 ALSHLKGI--YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp GGTTCCSC--EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred HhCccccc--EEECcCCcccccCHhhcccCCCCC
Confidence 88888887 377888888888888777777654
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=121.08 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=78.1
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCC
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKG 175 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~ 175 (209)
..|.++++|++|++++|.+++..|.. +.++++|++|++++|++++..+..++++++|++|++++|.+++ .+|..+
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 145 (570)
T 2z63_A 70 GAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (570)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred ccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh
Confidence 44666777777777777777555555 7777778888888887775444467788888888888888876 578888
Q ss_pred cccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 176 KYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 176 ~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+++.+|.. ..+.+|.+++..|..++.++++
T Consensus 146 ~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 146 SNLTNLEH-LDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp GGCTTCCE-EECTTSCCCEECGGGGHHHHTC
T ss_pred cccCCCCE-EeCcCCccceecHHHccchhcc
Confidence 88888775 7778888887777777777765
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=2.1e-13 Score=112.32 Aligned_cols=89 Identities=20% Similarity=0.108 Sum_probs=47.8
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC-CCcc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGKY 177 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~-~~~~ 177 (209)
+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..|..+++|++|+|++|++++ +|. .+..
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~ 170 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNG 170 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTT
T ss_pred hccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcC
Confidence 344555555555555555433333 5555666666666666654444445556666666666666653 333 3344
Q ss_pred cCCCCCCCccCCCCCc
Q 028394 178 ASTLFPCPIFCGSYFT 193 (209)
Q Consensus 178 l~~l~~~~~~~~n~~~ 193 (209)
+.+|.. ..+.+|.++
T Consensus 171 l~~L~~-L~L~~N~l~ 185 (290)
T 1p9a_G 171 LENLDT-LLLQENSLY 185 (290)
T ss_dssp CTTCCE-EECCSSCCC
T ss_pred cCCCCE-EECCCCcCC
Confidence 555543 455555555
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=2.8e-13 Score=111.64 Aligned_cols=108 Identities=23% Similarity=0.197 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (209)
Q Consensus 76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 155 (209)
++.|++++|.++. +++..|..+++|++|++++|.+++..+.. +..+++|++|+|++|++++..+..+..++
T Consensus 102 L~~L~l~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 102 LTVLDVSFNRLTS-----LPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp CCEEECCSSCCCC-----CCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred CCEEECCCCcCcc-----cCHHHHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 4444444444432 22345778888999999999988654444 67888899999999999865555678888
Q ss_pred CCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 156 SLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 156 ~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+|++|+|++|+++ .||..+....++.. ..+.+|.+..
T Consensus 173 ~L~~L~L~~N~l~-~ip~~~~~~~~L~~-l~L~~Np~~C 209 (290)
T 1p9a_G 173 NLDTLLLQENSLY-TIPKGFFGSHLLPF-AFLHGNPWLC 209 (290)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCCCSE-EECCSCCBCC
T ss_pred CCCEEECCCCcCC-ccChhhcccccCCe-EEeCCCCccC
Confidence 9999999999998 78888888777664 6677777763
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=4.2e-13 Score=118.98 Aligned_cols=124 Identities=20% Similarity=0.169 Sum_probs=90.4
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.++.+. +..|..+++|++|++++|.+++..|.. +.++++|++|++++|++++..|..|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCEEC-----TTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEEccCCccCccC-----hhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 35778888888776443 335677888888888888887655555 778888888888888888766777888
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHHhhh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLARFL 207 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~~~~ 207 (209)
+++|++|++++|++++--+..++++.+|.. ..+.+|.+++ ++|+.++.++++.
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~-L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCE-EECCSSCCCCCCCCGGGGGCTTCC
T ss_pred ccccccccccccccccCCCccccccccccE-EecCCCccceecChhhhcccCCCC
Confidence 888888888888887544446777777775 7777777776 6777777666553
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=9.3e-14 Score=114.50 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=54.9
Q ss_pred ccCCCCCCEEEccCceecc-ccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394 99 FTPFQQLESLYLIGNNIAG-CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY 177 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~ 177 (209)
+..+++|++|++++|.+++ .+|.. +..+++|++|++++|++++..|..++.+++|++|++++|++++..+..+..
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred cccCcCCCEEECCCCccccccchhH----HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 4445555555555555554 34444 556666666666666666555555666666666666666666544445555
Q ss_pred cCCCCCCCccCCCCCchhhHHHH
Q 028394 178 ASTLFPCPIFCGSYFTEQLEVLI 200 (209)
Q Consensus 178 l~~l~~~~~~~~n~~~~~~p~~~ 200 (209)
+.+|.. ..+.+|.+++..|..+
T Consensus 222 l~~L~~-L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 222 LNSLQV-LDYSLNHIMTSKKQEL 243 (306)
T ss_dssp CTTCCE-EECTTSCCCBCSSSSC
T ss_pred cccCCE-eECCCCCCcccCHHHH
Confidence 555553 5556666665555443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=1.1e-12 Score=109.05 Aligned_cols=100 Identities=21% Similarity=0.175 Sum_probs=82.8
Q ss_pred cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccC
Q 028394 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS 179 (209)
Q Consensus 100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~ 179 (209)
..+++|++|++++|.+++. |. ...+++|++|++++|++++ +|+.+..+++|++|++++|+++ .+|..+..+.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred hccCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 3567788888888887743 43 4568999999999999995 5666999999999999999999 6899999999
Q ss_pred CCCCCCccCCCCCc-hhhHHHHHHHHhhhh
Q 028394 180 TLFPCPIFCGSYFT-EQLEVLIRDLARFLR 208 (209)
Q Consensus 180 ~l~~~~~~~~n~~~-~~~p~~~~~L~~~~~ 208 (209)
+|.. ..+.+|.++ +.+|..+..++++.+
T Consensus 238 ~L~~-L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 238 NLEH-FDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp TCCE-EECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred CCCE-EEccCCCccCcCHHHHHhccccceE
Confidence 8885 889999999 888998888776643
No 72
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=5.5e-13 Score=101.58 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=93.8
Q ss_pred EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (209)
Q Consensus 77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 156 (209)
+.++++++++..++. . + .++|+.|++++|.+++..+.. +..+++|++|++++|++++..|..++.+++
T Consensus 10 ~~l~~~~~~l~~~p~-----~-~--~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-----G-I--PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TEEECCSSCCSSCCT-----T-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEecCCCCccCCC-----C-C--CCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCc
Confidence 578899998875532 1 1 368999999999999655555 789999999999999999777777899999
Q ss_pred CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
|++|++++|++++..|..+..+.+|.. ..+.+|.+++-.+..+..++++
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKE-LALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTTC
T ss_pred cCEEECCCCCccccCHHHhhCCcccCE-EECcCCcceEeCHHHhcCCccc
Confidence 999999999999776667788888875 8888999986555444555443
No 73
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.39 E-value=4.6e-13 Score=116.82 Aligned_cols=123 Identities=16% Similarity=0.069 Sum_probs=101.6
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+|++|.+..+. +..|.++++|++|+|++|.+++..+.. +.++++|++|+|++|++++..|..+.+
T Consensus 56 ~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 56 PHLEELELNENIVSAVE-----PGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCEEECCCCccCEeC-----hhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHccc
Confidence 57899999999887543 456888999999999999998544444 788999999999999999888888999
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+++|++|++++|.+++..|..+..+.+|.. ..+.+|.+++..+..+..++++
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQ-LTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCE-EEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCE-EECCCCcCcccChhHhcccCCC
Confidence 999999999999999888888888888875 7788888887766667666554
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.4e-13 Score=106.86 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=97.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+++++.+..+. .+..+++|++|++++|.++ .+ +. +..+++|++|++++|++++..|..++.
T Consensus 44 ~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~l~~n~~~-~~-~~----l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-------GIEYAHNIKDLTINNIHAT-NY-NP----ISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESSCCSCCT-------TGGGCTTCSEEEEESCCCS-CC-GG----GTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred CCccEEeccCCCccChH-------HHhcCCCCCEEEccCCCCC-cc-hh----hhcCCCCCEEEeECCccCcccChhhcC
Confidence 36889999999887543 3777999999999999775 23 34 899999999999999999888999999
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
+++|++|++++|++++..|..++.+.+|.. ..+.+|.+.+.+| .+..+++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~-L~L~~n~~i~~~~-~l~~l~~ 160 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNS-IDLSYNGAITDIM-PLKTLPE 160 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCE-EECCSCTBCCCCG-GGGGCSS
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCE-EEccCCCCccccH-hhcCCCC
Confidence 999999999999999999999999999885 7788887555565 3444443
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=120.08 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+. +..+..+++|++|++++|.+++..|.. ++++++|++|++++|+++ .+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-----TSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCC-----HHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccEEECCCCcccccC-----hhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--c
Confidence 57999999999887543 345788999999999999999877877 999999999999999999 68876 8
Q ss_pred CCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchh
Q 028394 154 LSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQ 195 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~ 195 (209)
+++|++|++++|++++ .+|..++++.+|.. ..+.+|.+++.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~-L~L~~n~l~~~ 130 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKF-LGLSTTHLEKS 130 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCE-EEEEESSCCGG
T ss_pred cCCccEEeccCCccccccchhhhccCCcceE-EEecCcccchh
Confidence 9999999999999998 78999999999886 78888988874
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=5.2e-14 Score=131.86 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=98.8
Q ss_pred CcEEEEEcCCCCCCcc--ccc-----------ccCCcccc--CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEec
Q 028394 74 GRVIKLDLRDTRNWES--AEW-----------YMNASLFT--PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~--~~~-----------~~~~~~~~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~L 138 (209)
.+++.|+|++|.+... ... .+ |+.++ ++++|++|+|++|.+.|.+|.. ++++++|++|+|
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~L 522 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNI 522 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEEC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEEC
Confidence 5789999999998740 000 01 34455 8999999999999999999987 999999999999
Q ss_pred ccCC-CCC-cchhhhcCCC-------CCCEEeccCCccccccCC--CCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 139 DYNH-FNN-SIFSSLGGLS-------SLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 139 s~N~-l~g-~iP~~l~~l~-------~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++|+ ++| .+|..+++++ +|++|+|++|+++ .||. .++++.+|.. ..+++|.++ .+| .++.++++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~-L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL-LDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE-EECTTSCCC-BCC-CCCTTSEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE-EECCCCCcc-cch-hhcCCCcc
Confidence 9998 998 8998877766 8999999999999 8998 8888888875 777788877 777 55544443
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=2.7e-13 Score=120.84 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+. +..+..+++|++|++++|.+++..|.. +.++++|++|++++|+++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-----MPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCC-----GGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCCCccccC-----hhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 57899999999887543 356888999999999999999877777 899999999999999998 78876 8
Q ss_pred CCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCch
Q 028394 154 LSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+++|++|++++|++++ ++|..++++++|.. ..+.+|.+++
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~-L~L~~n~l~~ 160 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTF-LGLSAAKFRQ 160 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCE-EEEECSBCCT
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccE-EecCCCcccc
Confidence 9999999999999987 67788999998875 7777888775
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.37 E-value=4.4e-14 Score=117.23 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=60.7
Q ss_pred CCCCCCEEEccCceeccccCCCcchhc--CCCCCCcEEecccCCCCCcchhhhcCC-----CCCCEEeccCCccccccCC
Q 028394 101 PFQQLESLYLIGNNIAGCVENEGLDTL--SRLNNLKFLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRLIGSIDI 173 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~--~~l~~L~~L~Ls~N~l~g~iP~~l~~l-----~~L~~L~L~~N~l~G~iP~ 173 (209)
.+++|++|++++|.++|.+|.. + ..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPP----LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCC----SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCcccchhHHH----HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 4677777777777777777765 4 6677777777777777765 6666655 6677777777777666666
Q ss_pred CCcccCCCCCCCccCCCCCchh
Q 028394 174 KGKYASTLFPCPIFCGSYFTEQ 195 (209)
Q Consensus 174 ~~~~l~~l~~~~~~~~n~~~~~ 195 (209)
.++++.+|.. ..+++|.+.+.
T Consensus 168 ~~~~l~~L~~-L~Ls~N~l~~~ 188 (312)
T 1wwl_A 168 QVRVFPALST-LDLSDNPELGE 188 (312)
T ss_dssp TCCCCSSCCE-EECCSCTTCHH
T ss_pred HhccCCCCCE-EECCCCCcCcc
Confidence 6666666664 66666666654
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=5.3e-13 Score=111.19 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=75.8
Q ss_pred CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394 60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (209)
Q Consensus 60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l 130 (209)
..|+|+.+.|... ...++.|++++|.++.+. +..+..+++|++|++++|.+++..|.. +..+
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l 99 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-----DGDFKNLKNLHTLILINNKISKISPGA----FAPL 99 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-----hhhhccCCCCCEEECCCCcCCeeCHHH----hcCC
Confidence 3478999999741 246888999999887543 335677888888888888888666766 7777
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCC
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYF 192 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~ 192 (209)
++|++|++++|+++ .+|..+. ++|++|++++|++++..|..+.++.+|.. ..+.+|.+
T Consensus 100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l 157 (330)
T 1xku_A 100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV-VELGTNPL 157 (330)
T ss_dssp TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE-EECCSSCC
T ss_pred CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE-EECCCCcC
Confidence 77777777777766 4444332 44555555555555433333444444432 33344444
No 80
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=3e-12 Score=97.79 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=81.3
Q ss_pred ccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCC
Q 028394 62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132 (209)
Q Consensus 62 C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~ 132 (209)
|....+.|... ..+++.|+|++|.+..+. +..|..+++|++|+|++|++++..+.. +.++++
T Consensus 12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~ 82 (174)
T 2r9u_A 12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQ 82 (174)
T ss_dssp ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTT
T ss_pred ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccC-----HHHhcCCcCCCEEECCCCCCCccChhH----hCCcch
Confidence 44555666531 246889999999987543 456889999999999999999644444 689999
Q ss_pred CcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccc
Q 028394 133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGS 170 (209)
Q Consensus 133 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~ 170 (209)
|++|+|++|++++..|..|..+++|++|+|++|.+...
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99999999999976666799999999999999999864
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.35 E-value=1.1e-13 Score=122.52 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=74.0
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~ 152 (209)
.+++.|++++|.+..+. +..+..+++|++|++++|.+++..|.. ++++++|++|++++|++++ .+|..++
T Consensus 50 ~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 50 ANLQVLILKSSRINTIE-----GDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred CcccEEECCCCCcCccC-----hhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhhh
Confidence 46778888888776432 344666777777777777776555444 6666777777777777665 3455666
Q ss_pred CCCCCCEEeccCCccccccC-CCCcccCCCCCCCccCCCCCchhhHHHHHH
Q 028394 153 GLSSLRNLSLIGNRLIGSID-IKGKYASTLFPCPIFCGSYFTEQLEVLIRD 202 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP-~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~ 202 (209)
++++|++|++++|++.+.+| ..+.++++|.. ..+.+|.+++.+|..++.
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE-LEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEE-EEEEETTCCEECTTTTTT
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCe-eeccCCcccccChhhhhc
Confidence 66666666666666555555 35555655553 555556565555544443
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=8.8e-13 Score=118.59 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
.++.++++++.+..+ ++..+..+++|++|+|++|.+++..|.. ++.+++|++|+|++|.+++..|..|+++
T Consensus 52 ~l~~l~l~~~~l~~l-----p~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKNSTMRKL-----PAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCSEEEESSCEESEE-----CTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEeeCCCCCCc-----CHHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 456778888776543 3455778999999999999999877767 9999999999999999999888889999
Q ss_pred CCCCEEeccCCccccccCCC-CcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 155 SSLRNLSLIGNRLIGSIDIK-GKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~-~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
++|++|+|++|.+++ +|.. ++++.+|.. ..+.+|.+++..|..+..++++.
T Consensus 123 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 123 PLLTVLVLERNDLSS-LPRGIFHNTPKLTT-LSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCE-EECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCEEEeeCCCCCC-CCHHHhccCCCCCE-EEeeCCcCCCCChhhhhcCCcCc
Confidence 999999999999995 5554 588999885 88889999988888777766653
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.35 E-value=3.1e-13 Score=119.03 Aligned_cols=114 Identities=23% Similarity=0.187 Sum_probs=80.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~ 152 (209)
.+++.|++++|.+..+. +..+..+++|++|++++|.++ .+|. . .+++|++|++++|++++ .+|..++
T Consensus 45 ~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~-~lp~-----~-~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLD-----ISVFKFNQELEYLDLSHNKLV-KISC-----H-PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp TTCCEEECCSSCCCEEE-----GGGGTTCTTCCEEECCSSCCC-EEEC-----C-CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred ccccEEecCCCccCCcC-----hHHhhcccCCCEEecCCCcee-ecCc-----c-ccCCccEEeccCCccccccchhhhc
Confidence 46778888888776442 345777888888888888887 5665 2 67788888888888876 5777888
Q ss_pred CCCCCCEEeccCCccccccCCCCcccCCC--CCCCccCCCCC--chhhHHHHHHH
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYASTL--FPCPIFCGSYF--TEQLEVLIRDL 203 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l--~~~~~~~~n~~--~~~~p~~~~~L 203 (209)
++++|++|++++|++++ ..+..++++ .. ..+.+|.+ .+.+|+.+..+
T Consensus 113 ~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~-L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEK---SSVLPIAHLNISK-VLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp GCTTCCEEEEEESSCCG---GGGGGGTTSCEEE-EEEEECTTTTSSCCTTTTTTC
T ss_pred cCCcceEEEecCcccch---hhccccccceeeE-EEeeccccccccccccccccc
Confidence 88888888888888876 334555555 43 56667777 56666555443
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=2.8e-13 Score=112.41 Aligned_cols=110 Identities=20% Similarity=0.092 Sum_probs=81.2
Q ss_pred CcEEEEEcCCCCCCcccccccCCcc-ccCCCCCCEEEccCceeccccCCCcchhcCCC-----CCCcEEecccCCCCCcc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASL-FTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNSI 147 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l-----~~L~~L~Ls~N~l~g~i 147 (209)
.+++.|++++|.+....+ ... +..+++|++|++++|.+++. |.. ++.+ ++|++|++++|++++..
T Consensus 95 ~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-~~~----~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAP----PPLLEATGPDLNILNLRNVSWATR-DAW----LAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp SCCCEEEEEEEBCBSCCC----CCSSSCCSCCCSEEEEESCBCSSS-SSH----HHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CCccEEEccCCcccchhH----HHHHHhcCCCccEEEccCCCCcch-hHH----HHHHHHhhcCCCcEEEeeCCCCccch
Confidence 367777887777653211 222 27788889999999988876 655 5555 88888888888888877
Q ss_pred hhhhcCCCCCCEEeccCCccccc--cCCCC--cccCCCCCCCccCCCCCc
Q 028394 148 FSSLGGLSSLRNLSLIGNRLIGS--IDIKG--KYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 148 P~~l~~l~~L~~L~L~~N~l~G~--iP~~~--~~l~~l~~~~~~~~n~~~ 193 (209)
|..++++++|++|++++|++.|. +|..+ +.+.+|.. ..+.+|.++
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~-L~L~~N~l~ 214 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV-LALRNAGME 214 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE-EECTTSCCC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE-EECCCCcCc
Confidence 78888888888888888888876 34444 67777764 777788887
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=121.88 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcch-hhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP-~~l~ 152 (209)
.+++.|+|++|.+..+ .+..|.++++|++|+|++|.+++.+|.. ..+.++++|++|+|++|++++..| ..++
T Consensus 73 ~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFL-----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTCCEEECTTCCCCEE-----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred CCCCEEECCCCcCccc-----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHh
Confidence 4577777777776643 2566889999999999999999876653 127899999999999999998755 5799
Q ss_pred CCCCCCEEeccCCccccccCCCCccc--CCCCCCCccCCCCCchhhHHHHH
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYA--STLFPCPIFCGSYFTEQLEVLIR 201 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l--~~l~~~~~~~~n~~~~~~p~~~~ 201 (209)
++++|++|++++|.+++..|..+..+ .+|.. ..+..|.+++.+|..+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~-L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF-FSLAANSLYSRVSVDWG 195 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC-CEECCSBSCCCCCCCCC
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccce-EECCCCccccccccchh
Confidence 99999999999999999999988877 66664 77888888887665443
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.32 E-value=1.9e-12 Score=110.15 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=99.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.++++++.+..++ ...+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..+++
T Consensus 45 ~~l~~l~l~~~~l~~l~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLP-----AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp CCCSEEEEESCEESEEC-----THHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEecCCchhhCC-----hhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 45778888888776443 345677899999999999998766656 899999999999999999888888999
Q ss_pred CCCCCEEeccCCccccccCCC-CcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIK-GKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~-~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+++|++|++++|+++ .+|.. +.++.+|.. ..+.+|.+++..|..+..++++
T Consensus 116 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTT-LSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCE-EECCSSCCCBCCTTTTSSCTTC
T ss_pred CCCCCEEECCCCccC-cCCHHHhcCCCCCcE-EECCCCccCccChhhccCCCCC
Confidence 999999999999998 67765 478888875 7888998888777666665554
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.31 E-value=5.6e-12 Score=105.13 Aligned_cols=119 Identities=27% Similarity=0.291 Sum_probs=75.5
Q ss_pred CccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394 61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131 (209)
Q Consensus 61 ~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~ 131 (209)
.|+|..+.|... ..+++.|++++|.+..+. +..+..+++|++|++++|.+++..|.. +.+++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 102 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-----KDDFKGLQHLYALVLVNNKISKIHEKA----FSPLR 102 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECGGG----STTCT
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-----HhHhhCCCCCcEEECCCCccCccCHhH----hhCcC
Confidence 378999999641 246899999999887543 345677777888888888777665665 77777
Q ss_pred CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCC
Q 028394 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYF 192 (209)
Q Consensus 132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~ 192 (209)
+|++|++++|+++ .+|..+. ++|++|++++|++++..+..+.++.+|.. ..+.+|.+
T Consensus 103 ~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~-L~l~~n~l 159 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC-IEMGGNPL 159 (332)
T ss_dssp TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE-EECCSCCC
T ss_pred CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE-EECCCCcc
Confidence 7777777777776 4554433 45555555555555333333444544443 44444444
No 88
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=5e-12 Score=109.46 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=50.6
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|+.|+|++|.+++..|.. +.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 344555555566666555544444 5666666666666666665555556666666666666666664444444555
Q ss_pred CCCCCCCccCCCCCc
Q 028394 179 STLFPCPIFCGSYFT 193 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~ 193 (209)
.+|.. ..+.+|.+.
T Consensus 279 ~~L~~-L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLER-IHLHHNPWN 292 (440)
T ss_dssp TTCCE-EECCSSCEE
T ss_pred cCCCE-EEcCCCCcc
Confidence 55543 444555544
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=1.9e-12 Score=97.67 Aligned_cols=108 Identities=21% Similarity=0.121 Sum_probs=88.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc-chhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~-iP~~l~ 152 (209)
.+++.|++++|.+..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|++++|++++. .+..++
T Consensus 49 ~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred CCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHh
Confidence 4789999999998754 34778999999999999999877765 77799999999999999964 237899
Q ss_pred CCCCCCEEeccCCccccccC---CCCcccCCCCCCCccCCCCCc
Q 028394 153 GLSSLRNLSLIGNRLIGSID---IKGKYASTLFPCPIFCGSYFT 193 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP---~~~~~l~~l~~~~~~~~n~~~ 193 (209)
.+++|++|++++|.+++..+ ..+..+.+|.. ..+.+|...
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~-L~l~~n~~~ 160 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY-LDGYDREDQ 160 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE-ETTEETTSC
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE-ecCCCCChh
Confidence 99999999999999996544 36777888765 555566543
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.30 E-value=1.6e-12 Score=115.81 Aligned_cols=115 Identities=18% Similarity=0.105 Sum_probs=99.1
Q ss_pred EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (209)
Q Consensus 77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 156 (209)
+.+++++++++.++. .+ .++|++|++++|.+++..|.. +.++++|++|++++|++++..|..|+++++
T Consensus 34 ~~l~ls~~~L~~ip~------~~--~~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK------DL--PPRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCSCCT------TS--CTTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCCCCccCCC------CC--CCCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 789999999886542 22 278999999999999766666 999999999999999999888999999999
Q ss_pred CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHHhhh
Q 028394 157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLARFL 207 (209)
Q Consensus 157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~~~~ 207 (209)
|++|+|++|+++ .||.. .+.+|.. ..+.+|.+++ .+|+.++.++++.
T Consensus 102 L~~L~Ls~N~l~-~lp~~--~l~~L~~-L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC--PMASLRH-LDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp CCEEECTTSCCC-EECSC--CCTTCSE-EECCSSCCSBCCCCGGGGGCTTCC
T ss_pred CCEEECCCCcCC-ccCcc--ccccCCE-EECCCCCccccCchHhhcccCccc
Confidence 999999999999 79988 7888875 8889999987 6778887777654
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.30 E-value=4.1e-12 Score=115.27 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=97.8
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.|+|++|.+..+ ++..|..+++|++|++++|.+++..|.. ++++++|++|++++|++++..|..++++
T Consensus 74 ~L~~L~L~~n~l~~l-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 74 MLKVLNLQHNELSQL-----SDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp TCCEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred CcCEEECCCCccCcc-----ChhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhccc
Confidence 456666666665533 2345888999999999999998766666 9999999999999999999999999999
Q ss_pred CCCCEEeccCCccccccCCCCc--ccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGK--YASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~--~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++|++|++++|.+++..|..+. .+++|.. ..+.+|.+++..|..+..+.++
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKK-LELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESE-EECTTCCCCCBCTTGGGGSSEE
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccE-EECCCCcccccChhhhhhhhhh
Confidence 9999999999999987776554 3456664 7788999998888777665443
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=5.5e-12 Score=109.54 Aligned_cols=89 Identities=22% Similarity=0.189 Sum_probs=45.6
Q ss_pred cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccC
Q 028394 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS 179 (209)
Q Consensus 100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~ 179 (209)
..+++|+.|+|++|.+++..|.. +.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred cccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 34445555555555555444443 55555555555555555555555555555555555555555543334444454
Q ss_pred CCCCCCccCCCCCc
Q 028394 180 TLFPCPIFCGSYFT 193 (209)
Q Consensus 180 ~l~~~~~~~~n~~~ 193 (209)
+|.. ..+.+|.+.
T Consensus 291 ~L~~-L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVE-LHLHHNPWN 303 (452)
T ss_dssp TCCE-EECCSSCEE
T ss_pred CCCE-EEccCCCcC
Confidence 4442 444445444
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=1e-12 Score=97.24 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=86.0
Q ss_pred CCCCCEEEccCceec-cccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394 102 FQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST 180 (209)
Q Consensus 102 l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~ 180 (209)
.++|+.|++++|.++ |.+|.. +..+++|++|++++|++++. ..++.+++|++|++++|.+++.+|..+..+.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 578999999999998 889987 89999999999999999976 77899999999999999999989998888999
Q ss_pred CCCCCccCCCCCch-hhHHHHHHHHhh
Q 028394 181 LFPCPIFCGSYFTE-QLEVLIRDLARF 206 (209)
Q Consensus 181 l~~~~~~~~n~~~~-~~p~~~~~L~~~ 206 (209)
|.. ..+++|.+++ ..+..+..++++
T Consensus 90 L~~-L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 90 LTH-LNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CCE-EECTTSCCCSHHHHGGGGGCTTC
T ss_pred CCE-EECCCCcCCChHHHHHHhhCCCC
Confidence 885 8889999987 455666666654
No 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=4.7e-12 Score=96.46 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=88.1
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh--hhc
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--SLG 152 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~--~l~ 152 (209)
+++.|++++|.++.+ +.+..+++|++|++++|.+++ +|+. .+..+++|++|++++|+++ .+|. .++
T Consensus 43 ~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N~l~~-~~~~---~~~~l~~L~~L~L~~N~i~-~~~~~~~l~ 110 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNNRICR-IGEG---LDQALPDLTELILTNNSLV-ELGDLDPLA 110 (176)
T ss_dssp CCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSSCCCE-ECSC---HHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred CCCEEECCCCCCCcc-------cccccCCCCCEEECCCCcccc-cCcc---hhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence 799999999998854 247889999999999999995 5554 1488999999999999996 6776 899
Q ss_pred CCCCCCEEeccCCccccccCCC----CcccCCCCCCCccCCCCCch
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIK----GKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~----~~~l~~l~~~~~~~~n~~~~ 194 (209)
.+++|++|++++|.++ .+|.. +..+.+|.. ..+..|....
T Consensus 111 ~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~-Ld~~~n~~~~ 154 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV-LDFQKVKLKE 154 (176)
T ss_dssp GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE-ETTEECCHHH
T ss_pred cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce-eCCCcCCHHH
Confidence 9999999999999998 67875 788888775 6666666543
No 95
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=4e-12 Score=105.79 Aligned_cols=85 Identities=26% Similarity=0.239 Sum_probs=50.4
Q ss_pred CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP 183 (209)
Q Consensus 104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~ 183 (209)
+|++|++++|.+++..|.. +..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+..+.+|..
T Consensus 193 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267 (330)
T ss_dssp TCSEEECTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred cCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence 3444444444444333333 666666666666666666655556666666666666666666 66666666666553
Q ss_pred CCccCCCCCch
Q 028394 184 CPIFCGSYFTE 194 (209)
Q Consensus 184 ~~~~~~n~~~~ 194 (209)
..+.+|.+++
T Consensus 268 -L~l~~N~i~~ 277 (330)
T 1xku_A 268 -VYLHNNNISA 277 (330)
T ss_dssp -EECCSSCCCC
T ss_pred -EECCCCcCCc
Confidence 5556666654
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.26 E-value=5.4e-13 Score=110.99 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=83.3
Q ss_pred ccCCCCCCEEEccCceeccc-cCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCC-cccc-ccCCCC
Q 028394 99 FTPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN-RLIG-SIDIKG 175 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N-~l~G-~iP~~~ 175 (209)
+..+++|++|++++|.+++. +|.. +..+++|++|++++|++++..|..++.+++|++|++++| .+++ .+|..+
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 45678899999999988766 7765 788899999999999998888888888999999999998 6877 377777
Q ss_pred cccCCCCCCCccCCC-CCchh-hHHHHHHHH-hh
Q 028394 176 KYASTLFPCPIFCGS-YFTEQ-LEVLIRDLA-RF 206 (209)
Q Consensus 176 ~~l~~l~~~~~~~~n-~~~~~-~p~~~~~L~-~~ 206 (209)
.++.+|.. ..+.+| .+++. ++..+..++ ++
T Consensus 165 ~~~~~L~~-L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 165 SSCSRLDE-LNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp HHCTTCCE-EECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred hcCCCCCE-EcCCCCCCcChHHHHHHHHhcccCC
Confidence 78888775 777788 88864 787777776 54
No 97
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.26 E-value=7.2e-13 Score=111.43 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=56.9
Q ss_pred ccCCCCCCEEEccCceeccccCC--CcchhcCCCCCCcEEecccCC-CCCcchhhhcCCCCCCEEeccCCccccccCCCC
Q 028394 99 FTPFQQLESLYLIGNNIAGCVEN--EGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~--~~~~~~~~l~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~ 175 (209)
+..+++|++|++++|.++ .+|. . +..+++|++|++++|+ +++..|..++++++|++|++++|++++..|..+
T Consensus 120 ~~~l~~L~~L~L~~n~l~-~l~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYK-TLGETSL----FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp HTTCTTCSEEECTTCCCS-SSCSSCS----CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred hCCCccCCEEECCCCCCc-ccCchhh----hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 455666666666666665 3443 3 5666777777777763 554445566677777777777777777667777
Q ss_pred cccCCCCCCCccCCCCCch
Q 028394 176 KYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 176 ~~l~~l~~~~~~~~n~~~~ 194 (209)
.++.+|.. ..+.+|.++.
T Consensus 195 ~~l~~L~~-L~l~~n~l~~ 212 (353)
T 2z80_A 195 KSIQNVSH-LILHMKQHIL 212 (353)
T ss_dssp TTCSEEEE-EEEECSCSTT
T ss_pred hccccCCe-ecCCCCcccc
Confidence 77666654 5666666643
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.25 E-value=9.2e-12 Score=102.99 Aligned_cols=126 Identities=16% Similarity=0.010 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCCCcccccccCCccc--cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLF--TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
+++.|++++|.+.... +..+ ..+++|++|++++|.+++..|......+..+++|++|++++|++++..|..++
T Consensus 92 ~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 4788888888776332 2234 77899999999999998766532112256789999999999999988888899
Q ss_pred CCCCCCEEeccCCccccc--cCC--CCcccCCCCCCCccCCCCCc--hhhHH-HHHHHHhh
Q 028394 153 GLSSLRNLSLIGNRLIGS--IDI--KGKYASTLFPCPIFCGSYFT--EQLEV-LIRDLARF 206 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~--iP~--~~~~l~~l~~~~~~~~n~~~--~~~p~-~~~~L~~~ 206 (209)
.+++|++|+|++|++.|. +|. .++.+.+|.. ..+.+|.++ +.++. .++.++++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~~~l~~~l~~L 226 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN-LALRNTGMETPTGVCAALAAAGVQP 226 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS-CBCCSSCCCCHHHHHHHHHHHTCCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE-EECCCCCCCchHHHHHHHHhcCCCC
Confidence 999999999999998764 432 3367777775 778888886 33332 24555444
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=1.5e-12 Score=116.90 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCc-----cccce-EEcCCCCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc
Q 028394 50 NCWVDDENYSDCC-----QWERV-ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG 123 (209)
Q Consensus 50 ~~W~~~~~~~~~C-----~W~gv-~C~~~~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 123 (209)
..|.. +.++| .|.|+ .|. ..+++.|++++++++.++. . + +++|++|+|++|.++ .+| .
T Consensus 34 ~~W~~---~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp~-----~-l--~~~L~~L~Ls~N~l~-~ip-~- 97 (571)
T 3cvr_A 34 DKWEK---QALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPD-----N-L--PPQITVLEITQNALI-SLP-E- 97 (571)
T ss_dssp HHHHT---TCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCCS-----C-C--CTTCSEEECCSSCCS-CCC-C-
T ss_pred HHHhc---cCCccccccchhhhccccc--cCCccEEEeCCCCCCccCH-----h-H--cCCCCEEECcCCCCc-ccc-c-
Confidence 34643 45677 79999 787 3578999999998875432 1 1 245566666666555 444 2
Q ss_pred chhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc
Q 028394 124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 124 ~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G 169 (209)
.+++|++|++++|++++ +|. +++ +|++|+|++|++++
T Consensus 98 -----~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 98 -----LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp -----CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred -----ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 13444555555555543 444 332 44444444444443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.23 E-value=8.1e-12 Score=103.35 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=66.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccc--cCCCcchhcCCCCCCcEEecccCCCCCcchh--
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC--VENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-- 149 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~--ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~-- 149 (209)
.+++.|++++|.+..+ .+..+..+++|++|++++|.+.+. ++.. ..++.+++|++|++++|+++ .+|.
T Consensus 145 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~ 216 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAF-----SCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVC 216 (310)
T ss_dssp SCCCEEEEECCSSCCC-----CTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHH
T ss_pred cCCCEEEeeCCCcchh-----hHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHH
Confidence 3677777877776533 234567788888888888887653 2221 00245666666666666665 2222
Q ss_pred --hhcCCCCCCEEeccCCccccccCCCCcccC---CCCCCCccCCCCCc
Q 028394 150 --SLGGLSSLRNLSLIGNRLIGSIDIKGKYAS---TLFPCPIFCGSYFT 193 (209)
Q Consensus 150 --~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~---~l~~~~~~~~n~~~ 193 (209)
.++.+++|++|+|++|++++.+|..++.+. +|.. ..+++|.++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~-L~Ls~N~l~ 264 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS-LNLSFAGLE 264 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC-EECCSSCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE-EECCCCCCC
Confidence 245666666777777776666666665553 4442 455555555
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=1.9e-11 Score=109.68 Aligned_cols=87 Identities=26% Similarity=0.261 Sum_probs=78.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcc-hhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~i-P~~l~ 152 (209)
.+++.|+|++|.++.+ |..++.+++|+.|+|++|.+++ +| . ++.+++|++|+|++|++++.+ |..++
T Consensus 463 ~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 463 LLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp TTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred ccCcEeecCccccccc------chhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 4799999999998855 3468899999999999999997 77 5 999999999999999999887 99999
Q ss_pred CCCCCCEEeccCCccccccC
Q 028394 153 GLSSLRNLSLIGNRLIGSID 172 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP 172 (209)
.+++|++|+|++|++++..|
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCEEEecCCcCCCCcc
Confidence 99999999999999997655
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.21 E-value=1.2e-11 Score=98.42 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCC-CCcccccccCCccccCCCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh
Q 028394 74 GRVIKLDLRDTR-NWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151 (209)
Q Consensus 74 ~~v~~L~L~~~~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l 151 (209)
.+++.|++++|. ++.+. +..|..+++|++|++++ |.+++..+.. +..+++|++|++++|++++ +|. +
T Consensus 55 ~~L~~L~l~~n~~l~~i~-----~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~-lp~-~ 123 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLE-----SHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKM-FPD-L 123 (239)
T ss_dssp TTCCEEEEECCSSCCEEC-----TTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCS-CCC-C
T ss_pred CCCcEEeCCCCCCcceeC-----HhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcc-ccc-c
Confidence 467777887775 65433 23455666666666666 6666433333 5566666666666666654 444 5
Q ss_pred cCCCCCC---EEeccCC-ccccccCCCCcccCCCC-CCCccCCCCCc
Q 028394 152 GGLSSLR---NLSLIGN-RLIGSIDIKGKYASTLF-PCPIFCGSYFT 193 (209)
Q Consensus 152 ~~l~~L~---~L~L~~N-~l~G~iP~~~~~l~~l~-~~~~~~~n~~~ 193 (209)
+.+++|+ +|++++| ++++-.|..+..+.+|. . ..+.+|.++
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~-L~l~~n~l~ 169 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT-LKLYNNGFT 169 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE-EECCSCCCC
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeE-EEcCCCCCc
Confidence 5555555 5555555 55533333344444444 3 344444444
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=8e-12 Score=109.97 Aligned_cols=113 Identities=18% Similarity=0.065 Sum_probs=63.3
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC-CCCCCcEEecccCCCCCcchhhhcC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.++.|++++|.+..+. +..+..+++|+.|+|++|.+++.+|.. +. .+++|++|+|++|.+++. |. +..
T Consensus 121 ~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~l~~~-~~-~~~ 189 (487)
T 3oja_A 121 GKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-KG-QVV 189 (487)
T ss_dssp SCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred CCCEEECCCCCCCCCC-----chhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCccccc-cc-ccc
Confidence 3444444444444322 223455666666666666666655554 43 566666666666666644 22 234
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIR 201 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~ 201 (209)
+++|++|+|++|.+++ +|..+..+.+|.. ..+++|.+++ +|..+.
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~-L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTW-ISLRNNKLVL-IEKALR 234 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSE-EECTTSCCCE-ECTTCC
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccE-EEecCCcCcc-cchhhc
Confidence 6667777777777765 4444666666654 6666666664 444443
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=5.4e-12 Score=104.90 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=73.8
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccC-CCCC-cchhhhcCCCCCCEEeccCC-ccccc-cCCC
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNN-SIFSSLGGLSSLRNLSLIGN-RLIGS-IDIK 174 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L~L~~N-~l~G~-iP~~ 174 (209)
+..+++|++|++++|.+++.+|.. ++.+++|++|++++| .+++ .+|..+.++++|++|++++| .+++. +|..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 556778888888888777766665 777788888888887 6765 36666777788888888888 77764 6666
Q ss_pred CcccC-CCCCCCccCCC--CCc-hhhHHHHHHHHhhh
Q 028394 175 GKYAS-TLFPCPIFCGS--YFT-EQLEVLIRDLARFL 207 (209)
Q Consensus 175 ~~~l~-~l~~~~~~~~n--~~~-~~~p~~~~~L~~~~ 207 (209)
+..+. +|.. ..+.+| .++ +.+|..+..++++.
T Consensus 190 ~~~l~~~L~~-L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 190 VAHVSETITQ-LNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp HHHSCTTCCE-EECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred HHhcccCCCE-EEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 67777 6664 666666 455 66777776666543
No 105
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.20 E-value=8.5e-12 Score=104.00 Aligned_cols=121 Identities=18% Similarity=0.049 Sum_probs=82.5
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.|++++|.+..+ .+..+..+++|+.|++++|.+++..|.. +..+++|++|++++|+++ .+|..++.+
T Consensus 194 ~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 194 TLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp SCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 445555555555432 2345777888888888888888766655 788888888999888888 788888888
Q ss_pred CCCCEEeccCCccccccCCCCccc------CCCCCCCccCCCCCc--hhhHHHHHHHHhh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYA------STLFPCPIFCGSYFT--EQLEVLIRDLARF 206 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l------~~l~~~~~~~~n~~~--~~~p~~~~~L~~~ 206 (209)
++|++|++++|++++.-+..+... ..+. ...+.+|.+. +..|..+..++++
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~-~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN-GISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS-EEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred ccCCEEECCCCCCCccChhHcccccccccccccc-ceEeecCcccccccCcccccccchh
Confidence 889999998888886544444433 2222 3566777776 4445545544443
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.19 E-value=7.9e-12 Score=103.78 Aligned_cols=116 Identities=17% Similarity=0.047 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcchhhhcC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.++.|++++|.+..+. +..+..+++|++|++++|.+++..|.. + ..+++|++|++++|++++. |. ...
T Consensus 121 ~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~-~~-~~~ 189 (317)
T 3o53_A 121 GKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-KG-QVV 189 (317)
T ss_dssp SCEEEECCSSCCCSGG-----GBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred CCCEEECCCCCCCCcc-----chhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcCccc-cc-ccc
Confidence 3445555555544322 234556777777777777777655554 4 3577778888888877744 33 334
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHH
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLA 204 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~ 204 (209)
+++|++|++++|++++ +|..+..+.+|.. ..+.+|.++ .+|..+..++
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~-L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTW-ISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSE-EECTTSCCC-EECTTCCCCT
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccE-EECcCCccc-chhhHhhcCC
Confidence 7788888888888874 5666777777764 777777777 3555444433
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=2.3e-11 Score=100.08 Aligned_cols=85 Identities=25% Similarity=0.320 Sum_probs=48.8
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|++|++++|.+++ ++ . +..+++|++|++++|++++. +.++.+++|++|++++|++++..| +..+
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~~-~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l 177 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred hccCCCCCEEECCCCcCCC-Ch-h----hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence 4445555666666665553 22 2 55666666666666666643 345666666666666666665433 5555
Q ss_pred CCCCCCCccCCCCCch
Q 028394 179 STLFPCPIFCGSYFTE 194 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~ 194 (209)
.+|.. ..+++|.+++
T Consensus 178 ~~L~~-L~L~~N~i~~ 192 (291)
T 1h6t_A 178 TKLQN-LYLSKNHISD 192 (291)
T ss_dssp TTCCE-EECCSSCCCB
T ss_pred CccCE-EECCCCcCCC
Confidence 55553 5556666654
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=3e-11 Score=99.40 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+.. +..+++|++|++++|.+++ +|. +..+++|++|++++|++++. +.+..
T Consensus 68 ~~L~~L~L~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~L~~n~i~~~--~~l~~ 132 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKD-LSS-----LKDLKKLKSLSLEHNGISDI--NGLVH 132 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-GGG-----GTTCTTCCEEECTTSCCCCC--GGGGG
T ss_pred CCCCEEEccCCccCCCcc-------cccCCCCCEEECCCCcCCC-Chh-----hccCCCCCEEECCCCcCCCC--hhhcC
Confidence 578899999998875432 7789999999999999985 443 89999999999999999863 46889
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+++|++|++++|++++. ..+..+.+|.. ..+++|.+++..| +..++++
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~-L~L~~N~l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDT-LSLEDNQISDIVP--LAGLTKL 180 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSE-EECCSSCCCCCGG--GTTCTTC
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCE-EEccCCccccchh--hcCCCcc
Confidence 99999999999999964 56788888875 7888998887655 5554443
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.18 E-value=5.7e-11 Score=99.18 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+.. +..+++|++|++++|.+++ ++ . +..+++|++|++++|++++. | .+..
T Consensus 221 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~-~~-~----~~~l~~L~~L~l~~n~l~~~-~-~~~~ 285 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISD-IN-A----VKDLTKLKMLNVGSNQISDI-S-VLNN 285 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-CG-G----GTTCTTCCEEECCSSCCCCC-G-GGGG
T ss_pred CcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCC-Ch-h----HhcCCCcCEEEccCCccCCC-h-hhcC
Confidence 467788888887764432 4456666666666666653 22 2 55566666666666666542 2 3555
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p 197 (209)
+++|++|++++|++++..|..+..+.+|.. ..+.+|.+++..|
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTT-LFLSQNHITDIRP 328 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSE-EECCSSSCCCCGG
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCE-EEccCCccccccC
Confidence 666666666666666555555555555553 5555555555444
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=2.6e-11 Score=102.06 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=86.7
Q ss_pred CccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394 61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131 (209)
Q Consensus 61 ~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~ 131 (209)
-|+|..|.|... ...++.|+|++|.++.++ +..|.++++|++|+|++|.+.+.+|.. .|.+++
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~ 79 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQ-----KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLP 79 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEEC-----TTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCT
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcC-----HHHHcCCCCCCEEECcCCCCCCccChh---Hhhcch
Confidence 378999999741 136889999999998654 456889999999999999998888865 367888
Q ss_pred CCcE-EecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394 132 NLKF-LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176 (209)
Q Consensus 132 ~L~~-L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~ 176 (209)
++++ +.++.|+++...|..|..+++|++|++++|++++..+..+.
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhc
Confidence 7765 67778999977788899999999999999999865444443
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=5.3e-11 Score=106.83 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=63.5
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCC-------CEEeccCCccccccCCCC
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL-------RNLSLIGNRLIGSIDIKG 175 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L-------~~L~L~~N~l~G~iP~~~ 175 (209)
++|++|+|++|.+++ +|. +. ++|++|+|++|+++ .+|. +.. +| ++|+|++|+|+ .||..+
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-----l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-----LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-----CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred CCcCEEECCCCCCCC-cch-----hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 345555555555543 443 22 67777777777777 6666 544 66 88888888888 688888
Q ss_pred cccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 176 KYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 176 ~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
+++.+|.. ..+.+|.+++.+|..+..+..
T Consensus 227 ~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 227 LSLDPTCT-IILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GGSCTTEE-EECCSSSCCHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEeeCCcCCCcCHHHHHHhhc
Confidence 88888875 889999999999999999875
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=4.5e-11 Score=99.04 Aligned_cols=80 Identities=29% Similarity=0.426 Sum_probs=41.6
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+. .+..+++|++|++++|.+++ +|. +..+++|++|++++|++++..+ ++.
T Consensus 85 ~~L~~L~L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~~~~--l~~ 149 (308)
T 1h6u_A 85 TKITELELSGNPLKNVS-------AIAGLQSIKTLDLTSTQITD-VTP-----LAGLSNLQVLYLDLNQITNISP--LAG 149 (308)
T ss_dssp CSCCEEECCSCCCSCCG-------GGTTCTTCCEEECTTSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred CCCCEEEccCCcCCCch-------hhcCCCCCCEEECCCCCCCC-chh-----hcCCCCCCEEECCCCccCcCcc--ccC
Confidence 46788888888776442 24445555555555555553 221 4444445555555554443222 444
Q ss_pred CCCCCEEeccCCccc
Q 028394 154 LSSLRNLSLIGNRLI 168 (209)
Q Consensus 154 l~~L~~L~L~~N~l~ 168 (209)
+++|++|++++|+++
T Consensus 150 l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVS 164 (308)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCccEEEccCCcCC
Confidence 444444444444444
No 113
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=5.4e-11 Score=99.60 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=75.2
Q ss_pred CcEEEEEcCC-CCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394 74 GRVIKLDLRD-TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~-~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~ 152 (209)
.+++.|+|++ |.++.+. +..|..+++|+.|+|++|+|++..|.. |.++++|++|+|++|+|++..|..+.
T Consensus 31 ~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDA----FHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp SCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTG----GGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred CCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCCccceeCHHH----hcCCcCCCEEeCCCCccceeCHHHcc
Confidence 4799999996 9887553 456889999999999999999987777 89999999999999999976666666
Q ss_pred CCCCCCEEeccCCcccccc
Q 028394 153 GLSSLRNLSLIGNRLIGSI 171 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~i 171 (209)
.++ |++|+|.+|.|...-
T Consensus 102 ~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCC-CCEEECCSSCCCCCG
T ss_pred cCC-ceEEEeeCCCccCCC
Confidence 666 999999999998643
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=5.8e-11 Score=98.33 Aligned_cols=103 Identities=22% Similarity=0.271 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+.. +..+++|++|++++|.+++ +| . +..+++|++|++++|++++ +|. +..
T Consensus 63 ~~L~~L~L~~n~i~~~~~-------~~~l~~L~~L~L~~n~l~~-~~-~----~~~l~~L~~L~l~~n~l~~-~~~-l~~ 127 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-------LKNLTKITELELSGNPLKN-VS-A----IAGLQSIKTLDLTSTQITD-VTP-LAG 127 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCCSCCEEECCSCCCSC-CG-G----GTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred CCCCEEEccCCcCCCChh-------HccCCCCCEEEccCCcCCC-ch-h----hcCCCCCCEEECCCCCCCC-chh-hcC
Confidence 466777777776664422 5667777777777777764 33 3 6777777777777777764 333 677
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+++|++|++++|++++..| +..+.+|.. ..+++|.+++
T Consensus 128 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~-L~l~~n~l~~ 165 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNISP--LAGLTNLQY-LSIGNAQVSD 165 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCE-EECCSSCCCC
T ss_pred CCCCCEEECCCCccCcCcc--ccCCCCccE-EEccCCcCCC
Confidence 7777777777777765333 555555553 5555555554
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.15 E-value=3.1e-11 Score=100.81 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.++++++.+..+.. +..+++|++|++++|.+++. |. +..+++|++|++++|++++ + +.+..+
T Consensus 200 ~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~l~~n~l~~-~-~~~~~l 264 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDL-SP-----LANLSQLTWLEIGTNQISD-I-NAVKDL 264 (347)
T ss_dssp TCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-GG-----GTTCTTCCEEECCSSCCCC-C-GGGTTC
T ss_pred ccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCC-cc-----hhcCCCCCEEECCCCccCC-C-hhHhcC
Confidence 34455555554443211 33445555555555555432 21 4455555555555555543 2 234555
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
++|++|++++|++++ +| .+..+.+|.. ..+.+|.+++..|..+..+++
T Consensus 265 ~~L~~L~l~~n~l~~-~~-~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 265 TKLKMLNVGSNQISD-IS-VLNNLSQLNS-LFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp TTCCEEECCSSCCCC-CG-GGGGCTTCSE-EECCSSCCCGGGHHHHHTCTT
T ss_pred CCcCEEEccCCccCC-Ch-hhcCCCCCCE-EECcCCcCCCcChhHhhcccc
Confidence 555555555555553 22 2444444443 444555555555555544443
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=2.5e-13 Score=105.54 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=87.3
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+. .+..+++|++|++++|.++ .+|.. +..+++|++|++++|++++ +| .++.
T Consensus 48 ~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~~n~l~-~l~~~----~~~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNLIK-KIENL----DAVADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp TTCSEEECSEEEESCCC-------CHHHHTTCCEEEEEEEEEC-SCSSH----HHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred CCCCEEECCCCCCcccc-------ccccCCCCCEEECCCCCcc-cccch----hhcCCcCCEEECcCCcCCc-CC-cccc
Confidence 47889999998876532 4677899999999999998 67776 7777899999999999986 56 5888
Q ss_pred CCCCCEEeccCCccccccC-CCCcccCCCCCCCccCCCCCchhhHH
Q 028394 154 LSSLRNLSLIGNRLIGSID-IKGKYASTLFPCPIFCGSYFTEQLEV 198 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP-~~~~~l~~l~~~~~~~~n~~~~~~p~ 198 (209)
+++|++|++++|++++--+ ..+..+.+|.. ..+.+|.+++.+|.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~-L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLED-LLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSE-EEECSCHHHHHHHT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCE-EEecCCcccccccc
Confidence 8999999999999985222 36677777775 77888888877664
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.11 E-value=8.3e-11 Score=102.49 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|+.|++++|.+++..| +..+++|++|++++|++++..| ++.+++|++|++++|++++. ..+.++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l 352 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANL 352 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccC
Confidence 3445555555555555554222 4555666666666666665444 45556666666666665543 244555
Q ss_pred CCCCCCCccCCCCCchhhH
Q 028394 179 STLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~~~p 197 (209)
.+|.. ..+.+|.+++.+|
T Consensus 353 ~~L~~-L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 353 TNINW-LSAGHNQISDLTP 370 (466)
T ss_dssp TTCCE-EECCSSCCCBCGG
T ss_pred CCCCE-EeCCCCccCccch
Confidence 55543 5556666666555
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=1.1e-10 Score=101.80 Aligned_cols=89 Identities=19% Similarity=0.148 Sum_probs=54.3
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc--ccCCCCccc--
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG--SIDIKGKYA-- 178 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G--~iP~~~~~l-- 178 (209)
++|++|++++|.+++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|+++| .+|.+++++
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~-------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL-------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM 384 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred CcCCEEECCCCcccc-cccc-------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence 478888888888885 6653 478999999999998 5777 57899999999999999 899999888
Q ss_pred -----------CCCCCCCccCCCCCch--hhHHHHHHHH
Q 028394 179 -----------STLFPCPIFCGSYFTE--QLEVLIRDLA 204 (209)
Q Consensus 179 -----------~~l~~~~~~~~n~~~~--~~p~~~~~L~ 204 (209)
.+|.. ..+.+|.+++ .+|..+..|+
T Consensus 385 n~~~~~i~~~~~~L~~-L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQ-LHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp CC-------------------------------------
T ss_pred cccccccccccCcCCE-EECCCCcCCccccchhhHhhee
Confidence 56664 7888999997 8998887764
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=7.2e-11 Score=106.67 Aligned_cols=85 Identities=25% Similarity=0.320 Sum_probs=50.8
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|+.|+|++|.+++ +| . +..+++|+.|+|++|++++. ..++.+++|+.|+|++|++++..| +..+
T Consensus 105 l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l 174 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 174 (605)
T ss_dssp STTCTTCCEEECTTSCCCC-CG-G----GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred hccCCCCCEEEecCCCCCC-Cc-c----ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccC
Confidence 4555666666666666653 22 2 56666666666666666643 446666666666666666665555 5555
Q ss_pred CCCCCCCccCCCCCch
Q 028394 179 STLFPCPIFCGSYFTE 194 (209)
Q Consensus 179 ~~l~~~~~~~~n~~~~ 194 (209)
.+|.. +.+++|.+++
T Consensus 175 ~~L~~-L~Ls~N~i~~ 189 (605)
T 1m9s_A 175 TKLQN-LYLSKNHISD 189 (605)
T ss_dssp TTCCE-EECCSSCCCB
T ss_pred CCCCE-EECcCCCCCC
Confidence 55553 5566666654
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.10 E-value=2e-11 Score=103.78 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=63.4
Q ss_pred cccCCCCCCEEEccCceec----cccCCCcchhcCCCCCCcEEecccCCCCCc----chhhh--cCCCCCCEEeccCCcc
Q 028394 98 LFTPFQQLESLYLIGNNIA----GCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSL--GGLSSLRNLSLIGNRL 167 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~----g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l--~~l~~L~~L~L~~N~l 167 (209)
.+..+++|++|+|++|.++ +.+|.. +..+++|++|+|++|++++. +|..+ +.+++|++|+|++|.+
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 3556677777777777775 456655 67777777777777777765 55555 3377777777777777
Q ss_pred cc----ccCCCC-cccCCCCCCCccCCCCCchhh
Q 028394 168 IG----SIDIKG-KYASTLFPCPIFCGSYFTEQL 196 (209)
Q Consensus 168 ~G----~iP~~~-~~l~~l~~~~~~~~n~~~~~~ 196 (209)
++ .+|..+ .++.+|.. ..+.+|.+++..
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~-L~l~~N~l~~~~ 319 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLF-LELNGNRFSEED 319 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCE-EECTTSBSCTTS
T ss_pred CHHHHHHHHHHHHhcCCCceE-EEccCCcCCcch
Confidence 76 477666 44666664 666777777655
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=1.1e-10 Score=105.35 Aligned_cols=113 Identities=23% Similarity=0.239 Sum_probs=94.6
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+|++|.+..+.+ +..+++|+.|+|++|.+++ +| . +..+++|++|+|++|++++ +| .+..
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~-l~-~l~~ 129 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-------LTNLKNLGWLFLDENKIKD-LS-S----LKDLKKLKSLSLEHNGISD-IN-GLVH 129 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCC-CT-T----STTCTTCCEEECTTSCCCC-CG-GGGG
T ss_pred CCCCEEEeeCCCCCCChh-------hccCCCCCEEECcCCCCCC-Ch-h----hccCCCCCEEEecCCCCCC-Cc-cccC
Confidence 578999999999876532 7789999999999999985 44 4 8999999999999999996 44 5899
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
+++|+.|+|++|++++. ..+..+.+|.. +.+++|.+++..| +..+++|
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~-L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDT-LSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSE-EECCSSCCCCCGG--GTTCTTC
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCE-EECcCCcCCCchh--hccCCCC
Confidence 99999999999999974 56788888875 8889999998776 5555544
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=9.3e-11 Score=95.10 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|++++|.+..+.. +..+++|++|++++|.+++ +|. +.. ++|++|++++|++++ +| .++.
T Consensus 63 ~~L~~L~L~~N~i~~~~~-------l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~~-~l~~ 126 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLSP-------LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-TD-SLIH 126 (263)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-SG-GGTT
T ss_pred CCCCEEECCCCccCCChh-------hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-Ch-hhcC
Confidence 467788888887765432 5667777777777777764 443 222 566666666666654 23 3556
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+++|++|++++|++++ +| .+..+.+|.. ..+.+|.+++
T Consensus 127 l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~-L~L~~N~i~~ 164 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKS-IV-MLGFLSKLEV-LDLHGNEITN 164 (263)
T ss_dssp CTTCCEEECTTSCCCB-CG-GGGGCTTCCE-EECTTSCCCB
T ss_pred cccccEEECCCCcCCC-Ch-HHccCCCCCE-EECCCCcCcc
Confidence 6666666666666654 33 4555555543 4555555554
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.08 E-value=1.7e-10 Score=100.58 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=28.8
Q ss_pred cCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 127 ~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
+..+++|++|++++|++++..| ++.+++|++|++++|++++..| +..+.+|.. ..+.+|.+++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~-L~l~~n~l~~ 345 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR-LFFYNNKVSD 345 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE-EECCSSCCCC
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE-eECCCCccCC
Confidence 3444444444444444443322 4444555555555555554433 344444442 4444444443
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=3.8e-10 Score=102.25 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCCCCccccc-------ccCCccc----cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCC
Q 028394 74 GRVIKLDLRDTRNWESAEW-------YMNASLF----TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH 142 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~-------~~~~~~~----~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~ 142 (209)
..++.|++++|.+..+... .+....+ ..+++|+.|++++|.+++ +|. .+++|++|++++|+
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNR 252 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSC
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCC
Confidence 4566777777766543321 0111111 113678888999998885 663 35789999999999
Q ss_pred CCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394 143 FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF 206 (209)
Q Consensus 143 l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~ 206 (209)
++ .+|. .+++|++|+|++|+++ .||..+.++.+|.. ..+.+|.+++.+|..+..++..
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~-L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT-VNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE-EECCSCCCCHHHHHHHHHHHHS
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE-EEecCCCCCCcCHHHHHhcccc
Confidence 98 5776 6789999999999999 89999999999875 8899999999999999988753
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=2.7e-11 Score=102.95 Aligned_cols=127 Identities=19% Similarity=0.142 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceec--c---ccCCCcchhcCCCCCCcEEecccCCCC----C
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIA--G---CVENEGLDTLSRLNNLKFLYLDYNHFN----N 145 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--g---~ip~~~~~~~~~l~~L~~L~Ls~N~l~----g 145 (209)
+++.|++++|.+...+--.+ ...+..+++|+.|++++|.++ | .+|.. +..+++|++|+|++|+++ +
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~----l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG----LAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT----GGGCTTCCEEECCSSCCHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH----hhcCCCccEEECcCCCCCcHHHH
Confidence 45555555555531110000 012445778888888888887 3 34434 788899999999999996 6
Q ss_pred cchhhhcCCCCCCEEeccCCccccc----cCCCC--cccCCCCCCCccCCCCCch----hhHHHH-HHHHhhh
Q 028394 146 SIFSSLGGLSSLRNLSLIGNRLIGS----IDIKG--KYASTLFPCPIFCGSYFTE----QLEVLI-RDLARFL 207 (209)
Q Consensus 146 ~iP~~l~~l~~L~~L~L~~N~l~G~----iP~~~--~~l~~l~~~~~~~~n~~~~----~~p~~~-~~L~~~~ 207 (209)
.+|..+..+++|++|+|++|.+++. +|..+ +++.+|.. ..+.+|.+++ .+|..+ .+++++.
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~-L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE-EECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 7888889999999999999999876 66665 33677764 7788999998 588877 4455543
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.07 E-value=3.4e-10 Score=98.81 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l 154 (209)
+++.|++++|.++.+ .++.+++|++|++++|.+++ +| ++.+++|++|++++|++++ +| ++.+
T Consensus 65 ~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~-~~------~~~l~~L~~L~L~~N~l~~-l~--~~~l 126 (457)
T 3bz5_A 65 GLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTN-LD------VTPLTKLTYLNCDTNKLTK-LD--VSQN 126 (457)
T ss_dssp TCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSC-CC------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred CCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCce-ee------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence 455555555555432 14556666666666666664 22 5566666666666666664 33 5666
Q ss_pred CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhh
Q 028394 155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQL 196 (209)
Q Consensus 155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~ 196 (209)
++|++|++++|++++ +| ++++.+|.. ..+.+|.+.+.+
T Consensus 127 ~~L~~L~l~~N~l~~-l~--l~~l~~L~~-L~l~~n~~~~~~ 164 (457)
T 3bz5_A 127 PLLTYLNCARNTLTE-ID--VSHNTQLTE-LDCHLNKKITKL 164 (457)
T ss_dssp TTCCEEECTTSCCSC-CC--CTTCTTCCE-EECTTCSCCCCC
T ss_pred CcCCEEECCCCccce-ec--cccCCcCCE-EECCCCCccccc
Confidence 666666666666665 33 555555553 455555444443
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.04 E-value=3.2e-10 Score=99.00 Aligned_cols=88 Identities=18% Similarity=0.050 Sum_probs=54.9
Q ss_pred ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA 178 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l 178 (209)
+..+++|+.|++++|.+++. . ++.+++|++|++++|++++ +| ++.+++|++|++++|+++|..+..+.++
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---D----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---C----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCee---c----cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 44566666666666666643 2 6677777777777777776 55 6777777777777777776544444444
Q ss_pred C-------CCCCCCccCCCCCchhhH
Q 028394 179 S-------TLFPCPIFCGSYFTEQLE 197 (209)
Q Consensus 179 ~-------~l~~~~~~~~n~~~~~~p 197 (209)
. ++. ...+.+|.+.+.+|
T Consensus 257 ~~L~l~~n~L~-~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 257 TTLHCIQTDLL-EIDLTHNTQLIYFQ 281 (457)
T ss_dssp CEEECTTCCCS-CCCCTTCTTCCEEE
T ss_pred CEEeccCCCCC-EEECCCCccCCccc
Confidence 3 222 24455555555554
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=8.2e-13 Score=102.57 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=82.3
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY 177 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~ 177 (209)
.+..+++|++|++++|.+++ +| . +..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-S----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-C----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-c----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence 47789999999999999996 77 5 899999999999999999 789888888999999999999997 67 5777
Q ss_pred cCCCCCCCccCCCCCchhhH-HHHHHHHhh
Q 028394 178 ASTLFPCPIFCGSYFTEQLE-VLIRDLARF 206 (209)
Q Consensus 178 l~~l~~~~~~~~n~~~~~~p-~~~~~L~~~ 206 (209)
+.+|.. ..+.+|.+++-.+ ..+..++++
T Consensus 114 l~~L~~-L~l~~N~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 114 LVNLRV-LYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp HHHSSE-EEESEEECCCHHHHHHHTTTTTC
T ss_pred CCCCCE-EECCCCcCCchhHHHHHhcCCCC
Confidence 888775 7788888885322 455555544
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.01 E-value=7.2e-10 Score=89.81 Aligned_cols=111 Identities=20% Similarity=0.138 Sum_probs=88.5
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~ 153 (209)
.+++.|+++++.+.++. .+..+++|++|++++|.+++. |+ +..+++|++|++++|++++ +|.. ..
T Consensus 41 ~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~L~~N~i~~~-~~-----l~~l~~L~~L~L~~N~l~~-l~~~-~~ 105 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-------GMQFFTNLKELHLSHNQISDL-SP-----LKDLTKLEELSVNRNRLKN-LNGI-PS 105 (263)
T ss_dssp TTCSEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCC-GG-----GTTCSSCCEEECCSSCCSC-CTTC-CC
T ss_pred CcCcEEECcCCCcccch-------HHhhCCCCCEEECCCCccCCC-hh-----hccCCCCCEEECCCCccCC-cCcc-cc
Confidence 47889999999887553 367799999999999999864 43 7899999999999999995 5553 33
Q ss_pred CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394 154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR 205 (209)
Q Consensus 154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~ 205 (209)
++|++|++++|++++ +| .+..+.+|.. ..+++|.+++- + .+..+++
T Consensus 106 -~~L~~L~L~~N~l~~-~~-~l~~l~~L~~-L~Ls~N~i~~~-~-~l~~l~~ 151 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRD-TD-SLIHLKNLEI-LSIRNNKLKSI-V-MLGFLSK 151 (263)
T ss_dssp -SSCCEEECCSSCCSB-SG-GGTTCTTCCE-EECTTSCCCBC-G-GGGGCTT
T ss_pred -CcccEEEccCCccCC-Ch-hhcCcccccE-EECCCCcCCCC-h-HHccCCC
Confidence 999999999999997 44 5788888875 88889988863 3 3444443
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.00 E-value=1.9e-10 Score=100.42 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G 169 (209)
++|++|++++|.+++ +| + ++++++|++|++++|++++ +|..+ ++|++|++++|++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-E----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE 187 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-C----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS
T ss_pred CCCCEEECcCCCCCC-Cc-c----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc
Confidence 345555555555553 44 2 4555555555555555543 33321 244444444444443
No 131
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.88 E-value=8.2e-11 Score=96.01 Aligned_cols=24 Identities=4% Similarity=-0.173 Sum_probs=15.7
Q ss_pred CCccccceEEcCCCCcEEEEEcCC
Q 028394 60 DCCQWERVECNDTTGRVIKLDLRD 83 (209)
Q Consensus 60 ~~C~W~gv~C~~~~~~v~~L~L~~ 83 (209)
..|+|.|+.|+....+|+.+...+
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred HHHhcCcEEECCCCCEEEEEEecC
Confidence 357899999986444665554433
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.86 E-value=1.5e-09 Score=98.29 Aligned_cols=67 Identities=25% Similarity=0.242 Sum_probs=43.9
Q ss_pred CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
++|++|++++|++++ +| ..+++|++|++++|+|+ .||. .+.+|.. ..+.+|.++ .+|..+..++++.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~-L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLS-LSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCE-EECCSSCCC-SCCGGGGGSCTTC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcE-EeCCCCCCC-cCCHHHhhccccC
Confidence 556666666666664 45 34567777777777777 5666 3344443 667788888 7787777766653
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.86 E-value=2.4e-10 Score=96.44 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCCCcccccccCCccccCC-----CCCCEEEccCceeccccCCCcchhcCCC-CCCcEEecccCCCCCcch
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTPF-----QQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIF 148 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~~~~l-~~L~~L~Ls~N~l~g~iP 148 (209)
+++.|+|++|.+...+. ..+..+ ++|++|+|++|.+++..+......+..+ ++|++|++++|++++..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNS-----DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCH-----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEECcCCCCCHHHH-----HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 57777777776653321 112222 7778888888877765444311113344 678888888888876666
Q ss_pred hhhc----C-CCCCCEEeccCCccccc----cCCCCcccC-CCCCCCccCCCCCchhhHHHHHH
Q 028394 149 SSLG----G-LSSLRNLSLIGNRLIGS----IDIKGKYAS-TLFPCPIFCGSYFTEQLEVLIRD 202 (209)
Q Consensus 149 ~~l~----~-l~~L~~L~L~~N~l~G~----iP~~~~~l~-~l~~~~~~~~n~~~~~~p~~~~~ 202 (209)
..+. . .++|++|+|++|++++. ++..+.... +|.. ..+++|.+++..+..+..
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~-L~Ls~n~l~~~~~~~l~~ 189 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS-LNLRGNNLASKNCAELAK 189 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE-EECTTSCGGGSCHHHHHH
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE-eeecCCCCchhhHHHHHH
Confidence 5543 2 35788888888888743 333333343 4543 677788887766665543
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.81 E-value=3.3e-10 Score=97.84 Aligned_cols=65 Identities=17% Similarity=0.040 Sum_probs=27.9
Q ss_pred CCCCCcEEecccCCCCCcchhhhcC-----CCCCCEEeccCCcccc----ccCCCCcccCCCCCCCccCCCCCch
Q 028394 129 RLNNLKFLYLDYNHFNNSIFSSLGG-----LSSLRNLSLIGNRLIG----SIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 129 ~l~~L~~L~Ls~N~l~g~iP~~l~~-----l~~L~~L~L~~N~l~G----~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
.+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..+.+|.. ..+.+|.+++
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~-L~l~~N~i~~ 412 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE-LDLSNNCLGD 412 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE-EECCSSSCCH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE-EECCCCCCCH
Confidence 3344444444444444333332221 3344444444444443 44444444444442 4444444443
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.77 E-value=6.9e-10 Score=95.85 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=18.8
Q ss_pred CCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCcccc
Q 028394 131 NNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 131 ~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G 169 (209)
++|++|++++|++++ .+|..+..+++|++|++++|++++
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 344455555555443 444444444455555555554443
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.75 E-value=2.8e-09 Score=89.89 Aligned_cols=119 Identities=19% Similarity=0.126 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCC-CCCEEEccCceeccccCCCcchhcCCC-----CCCcEEecccCCCCCcc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNSI 147 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~l-----~~L~~L~Ls~N~l~g~i 147 (209)
..++.|+|++|.++..+...+ ...+..++ +|++|+|++|.+++..+.. +..+ ++|++|+|++|++++..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDE----LVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHH----HHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHH----HHHHHhccCCCccEEECcCCcCChHH
Confidence 459999999999875432100 03466788 8999999999998765554 5543 89999999999999888
Q ss_pred hhhhcC----C-CCCCEEeccCCccccccCCCCccc-----CCCCCCCccCCCCCchhhHH
Q 028394 148 FSSLGG----L-SSLRNLSLIGNRLIGSIDIKGKYA-----STLFPCPIFCGSYFTEQLEV 198 (209)
Q Consensus 148 P~~l~~----l-~~L~~L~L~~N~l~G~iP~~~~~l-----~~l~~~~~~~~n~~~~~~p~ 198 (209)
+..++. + ++|++|++++|++++..+..+... ++|.. ..+++|.++...+.
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~-L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS-LNLRGNDLGIKSSD 156 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE-EECTTSCGGGSCHH
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE-EEccCCcCCHHHHH
Confidence 775544 4 899999999999987766555432 45554 78899999964433
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.67 E-value=3.3e-08 Score=82.97 Aligned_cols=104 Identities=11% Similarity=0.047 Sum_probs=80.6
Q ss_pred EEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh-hhcCCCC
Q 028394 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSS 156 (209)
Q Consensus 78 ~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~ 156 (209)
.++.+++++++++. .+ .+++++|+|++|+++ .||+. .|.++++|++|+|++|++.+.+|. .|.++++
T Consensus 13 ~v~C~~~~Lt~iP~------~l--~~~l~~L~Ls~N~i~-~i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 13 VFLCQESKVTEIPS------DL--PRNAIELRFVLTKLR-VIQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp EEEEESTTCCSCCT------TC--CTTCSEEEEESCCCS-EECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred EEEecCCCCCccCc------Cc--CCCCCEEEccCCcCC-CcCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 46778888876542 22 357999999999998 56653 289999999999999999888875 5789998
Q ss_pred CCE-EeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394 157 LRN-LSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE 194 (209)
Q Consensus 157 L~~-L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~ 194 (209)
|++ +.+++|++++-.|..+..+.+|.. ..+.+|.++.
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~-L~l~~n~l~~ 118 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQY-LLISNTGIKH 118 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCE-EEEEEECCSS
T ss_pred hhhhhcccCCcccccCchhhhhcccccc-cccccccccc
Confidence 875 667789999777788888888865 5566666653
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=1.9e-08 Score=81.94 Aligned_cols=67 Identities=27% Similarity=0.302 Sum_probs=51.2
Q ss_pred CCCCCCEEEccCceecc--ccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC--CCCEEeccCCccccccCC
Q 028394 101 PFQQLESLYLIGNNIAG--CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS--SLRNLSLIGNRLIGSIDI 173 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~l~G~iP~ 173 (209)
++++|+.|+|++|.+++ .+|.. +..+++|++|+|++|++++. ..+..+. +|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 47788888888888887 55555 67888888888888888864 3344444 888888888888887774
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=6.9e-09 Score=88.34 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCCCEEEccCceeccc----cCCCcchhcCCCCCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCccccc---
Q 028394 102 FQQLESLYLIGNNIAGC----VENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS--- 170 (209)
Q Consensus 102 l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G~--- 170 (209)
.+.|+.|+|++|.++.. ++.. +..+++|++|+|++|+++. .++..+...++|++|+|++|.++..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~----L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEG----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHH----HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHH----HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 45566666666666431 2222 4556667777777776654 2344555666677777777766542
Q ss_pred -cCCCCcccCCCCCCCccCCCCCchhhHHHHHH
Q 028394 171 -IDIKGKYASTLFPCPIFCGSYFTEQLEVLIRD 202 (209)
Q Consensus 171 -iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~ 202 (209)
++..+....+|.. ..+++|.++..-...+..
T Consensus 230 ~l~~~L~~~~~L~~-L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 230 ALARAAREHPSLEL-LHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHCSSCCE-EECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCE-EeccCCCCCHHHHHHHHH
Confidence 2233333444443 566666666555444443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=1e-08 Score=87.33 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=83.1
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCC----cch
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNN----SIF 148 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g----~iP 148 (209)
..++.|+|++|.++..+. ......+++|+.|+|++|.++..-.......+ ...+.|++|+|++|+++. .++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~----~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGL----RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHH----HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHH----HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 478899999988763221 11223466899999999998644222200112 356889999999999975 355
Q ss_pred hhhcCCCCCCEEeccCCccccc----cCCCCcccCCCCCCCccCCCCCchhh
Q 028394 149 SSLGGLSSLRNLSLIGNRLIGS----IDIKGKYASTLFPCPIFCGSYFTEQL 196 (209)
Q Consensus 149 ~~l~~l~~L~~L~L~~N~l~G~----iP~~~~~l~~l~~~~~~~~n~~~~~~ 196 (209)
..+..+++|++|+|++|.++.. ++..+...++|.. ..+++|.++..-
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~-L~Ls~N~i~~~g 227 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE-LNVAYNGAGDTA 227 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE-EECCSSCCCHHH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe-EECCCCCCCHHH
Confidence 6678899999999999999753 3555566667664 788999998643
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=8e-08 Score=73.74 Aligned_cols=130 Identities=14% Similarity=0.049 Sum_probs=86.1
Q ss_pred CCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----c
Q 028394 73 TGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----I 147 (209)
Q Consensus 73 ~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----i 147 (209)
...++.|+|++| .+..-+...+ ...+...++|++|+|++|.+...-.......+...+.|++|+|++|+++.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 357999999998 8763221111 123455788999999999986421111011255668899999999999863 5
Q ss_pred hhhhcCCCCCCEEec--cCCcccccc----CCCCcccCCCCCCCccCCCCCc--hhhHHHHHHHH
Q 028394 148 FSSLGGLSSLRNLSL--IGNRLIGSI----DIKGKYASTLFPCPIFCGSYFT--EQLEVLIRDLA 204 (209)
Q Consensus 148 P~~l~~l~~L~~L~L--~~N~l~G~i----P~~~~~l~~l~~~~~~~~n~~~--~~~p~~~~~L~ 204 (209)
...+...++|++|+| ++|.++..- ...+...++|.. ..+.+|.+. |.+...+.+-+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~-L~L~~n~i~~~~~i~~~L~~N~ 177 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK-FGYHFTQQGPRLRASNAMMNNN 177 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCE-EECCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCE-EeccCCCCChHHHHHHHHHhhH
Confidence 667788889999999 889997653 333334456664 677888886 33455554433
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.14 E-value=1.7e-07 Score=83.30 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=45.1
Q ss_pred CCCCCCEEEccCceeccc----cCCCcchhcCCCCCCcEEecccCCCC----CcchhhhcCCCCCCEEeccCCcccc
Q 028394 101 PFQQLESLYLIGNNIAGC----VENEGLDTLSRLNNLKFLYLDYNHFN----NSIFSSLGGLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~l~~L~~L~Ls~N~l~----g~iP~~l~~l~~L~~L~L~~N~l~G 169 (209)
.+++|++|+|++|.+++. ++.. ...+++|++|++++|.++ +.++..+.++++|++|++++|.+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHH----HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHH----HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 567888888888887654 2222 456677778888887776 3455556677778888877777654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=5.6e-06 Score=68.61 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=77.7
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc-EEecccCCCCCcchhhhc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK-FLYLDYNHFNNSIFSSLG 152 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~-~L~Ls~N~l~g~iP~~l~ 152 (209)
.+++.++|++|+++.++ ...|.++.+|+.+++++| +. .|++. .|.++++|+ .+++.+ +++..-+..|.
T Consensus 226 ~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~~l~l~~n-i~-~I~~~---aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIP-----DFTFAQKKYLLKIKLPHN-LK-TIGQR---VFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp TTCCEEECTTBCCCEEC-----TTTTTTCTTCCEEECCTT-CC-EECTT---TTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred CCCeEEECCCCCcceec-----HhhhhCCCCCCEEECCcc-cc-eehHH---HhhCChhccEEEEEcc-cceEEchhhhh
Confidence 37889999998887665 456888999999999998 65 56654 488999999 999988 77755567899
Q ss_pred CCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394 153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLFP 183 (209)
Q Consensus 153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~ 183 (209)
+|++|+.+++++|+++.--+..+.++.+|..
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 9999999999999998433346666666653
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.12 E-value=1.2e-07 Score=84.14 Aligned_cols=122 Identities=12% Similarity=0.109 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCCCcccccccCCccccC-CC-CCCEEEccCce-ecc-ccCCCcchhcCCCCCCcEEecccCCCCCc----
Q 028394 75 RVIKLDLRDTRNWESAEWYMNASLFTP-FQ-QLESLYLIGNN-IAG-CVENEGLDTLSRLNNLKFLYLDYNHFNNS---- 146 (209)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~-l~-~L~~L~Ls~N~-l~g-~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~---- 146 (209)
+++.|+|+++.++... ...+.. ++ +|++|+++++. ++. .++.. ...+++|++|+|++|.+++.
T Consensus 113 ~L~~L~L~~~~i~~~~-----~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLD-----LDRLAKARADDLETLKLDKCSGFTTDGLLSI----VTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp TCCEEEEESCBCCHHH-----HHHHHHHHGGGCCEEEEESCEEEEHHHHHHH----HHHCTTCSEEECTTCEEECCCSHH
T ss_pred CCCeEEeeccEecHHH-----HHHHHHhccccCcEEECcCCCCcCHHHHHHH----HhhCCCCCEEECccccccCcchhH
Confidence 5667777766554211 011222 23 37888887765 211 11111 34788899999999988766
Q ss_pred chhhhcCCCCCCEEeccCCccc----cccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394 147 IFSSLGGLSSLRNLSLIGNRLI----GSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL 207 (209)
Q Consensus 147 iP~~l~~l~~L~~L~L~~N~l~----G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~ 207 (209)
++.....+++|++|++++|.++ +.++..+.++.+|.. ..+.+|.+.+ +|..+..++++.
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~-L~L~~~~~~~-l~~~~~~~~~L~ 246 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS-VKVGDFEILE-LVGFFKAAANLE 246 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE-EECSSCBGGG-GHHHHHHCTTCC
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE-EeccCccHHH-HHHHHhhhhHHH
Confidence 6666778899999999999987 566666667777764 6677777765 777777766553
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=5.9e-06 Score=63.18 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=72.7
Q ss_pred ccCCCCCCEEEccCc-eeccccCCCcchhcCCCCCCcEEecccCCCCCc----chhhhcCCCCCCEEeccCCccccc---
Q 028394 99 FTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS--- 170 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~G~--- 170 (209)
+...+.|+.|+|++| .+...--......+...+.|++|+|++|+++.. +...+...++|++|+|++|.++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 556789999999999 886321111111267788999999999999753 455566778999999999999864
Q ss_pred -cCCCCcccCCCCCCCcc--CCCCCchhhHHHH
Q 028394 171 -IDIKGKYASTLFPCPIF--CGSYFTEQLEVLI 200 (209)
Q Consensus 171 -iP~~~~~l~~l~~~~~~--~~n~~~~~~p~~~ 200 (209)
+...+.....|.. ..+ .+|.++.+....+
T Consensus 112 ~l~~~L~~n~~L~~-L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 112 ALVEALQSNTSLIE-LRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp HHHHGGGGCSSCCE-EECCCCSSCCCHHHHHHH
T ss_pred HHHHHHHhCCCceE-EEecCCCCCCCHHHHHHH
Confidence 4555666667664 777 7899986544333
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.84 E-value=1.7e-06 Score=76.72 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCCcccccccCCcccc-CCCCCCEEEccCc-eeccc-cCCCcchhcCCCCCCcEEecccCCCCCcchhh
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGN-NIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS 150 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N-~l~g~-ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~ 150 (209)
.+++.|+|+++.++.... ..+. .+++|++|++++| .++.. ++.. ..++++|++|++++|.+++..+..
T Consensus 105 ~~L~~L~L~~~~~~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCL-----ELIAKSFKNFKVLVLSSCEGFSTDGLAAI----AATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp TTCCEEEEESCBCCHHHH-----HHHHHHCTTCCEEEEESCEEEEHHHHHHH----HHHCTTCCEEECTTCEEECCCGGG
T ss_pred CCCCeEEeeCcEEcHHHH-----HHHHHhCCCCcEEeCCCcCCCCHHHHHHH----HHhCCCCCEEeCcCCccCCcchHH
Confidence 357777777765542110 0111 2445555555555 23221 2221 224455555555555544433322
Q ss_pred hc----CCCCCCEEeccCCc
Q 028394 151 LG----GLSSLRNLSLIGNR 166 (209)
Q Consensus 151 l~----~l~~L~~L~L~~N~ 166 (209)
+. .+++|++|++++|.
T Consensus 176 l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC
T ss_pred HHHHhhcCCcCcEEEecccC
Confidence 22 33445555555443
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.78 E-value=2.8e-06 Score=75.28 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=63.2
Q ss_pred cCCCCCCEEEccCceeccccCCCcchhcCC-CCCCcEEecccCCCCCcchhhh-cCCCCCCEEeccCCccccccCC-CCc
Q 028394 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSR-LNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLSLIGNRLIGSIDI-KGK 176 (209)
Q Consensus 100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~L~~N~l~G~iP~-~~~ 176 (209)
..+++|+.|++++ .+++..+.. +.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. ...
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~----l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEY----IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHH----HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred hhCCCccEEeecC-cccHHHHHH----HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 3456677777755 444433332 444 7889999999999887666555 6788999999999998765554 334
Q ss_pred ccCCCCCCCccCCCCCchhhHHHH
Q 028394 177 YASTLFPCPIFCGSYFTEQLEVLI 200 (209)
Q Consensus 177 ~l~~l~~~~~~~~n~~~~~~p~~~ 200 (209)
.+.+|.. ..+.+|.++.+..+.+
T Consensus 504 ~l~~L~~-L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 504 KLETMRS-LWMSSCSVSFGACKLL 526 (594)
T ss_dssp GGGGSSE-EEEESSCCBHHHHHHH
T ss_pred hCCCCCE-EeeeCCCCCHHHHHHH
Confidence 4667664 6677887765443333
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=1.8e-05 Score=65.56 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=66.9
Q ss_pred CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCC-EEeccCCccccccC-CCCcccC
Q 028394 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR-NLSLIGNRLIGSID-IKGKYAS 179 (209)
Q Consensus 102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-~L~L~~N~l~G~iP-~~~~~l~ 179 (209)
+++|+.++|++|+++ .||+. .|.++++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++ .|+ ..+.++.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDF---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCT
T ss_pred cCCCeEEECCCCCcc-eecHh---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCc
Confidence 789999999999998 67765 4889999999999998 7745556799999999 999988 666 454 5677777
Q ss_pred CCCCCCccCCCCCch
Q 028394 180 TLFPCPIFCGSYFTE 194 (209)
Q Consensus 180 ~l~~~~~~~~n~~~~ 194 (209)
+|.. ..+..|.++.
T Consensus 298 ~L~~-l~l~~n~i~~ 311 (329)
T 3sb4_A 298 NLRY-VLATGDKITT 311 (329)
T ss_dssp TEEE-EEECSSCCCE
T ss_pred cCCE-EEeCCCccCc
Confidence 7764 5555666554
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.45 E-value=7.5e-05 Score=56.85 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCce-eccccCCCcchhcCCC----CCCcEEecccCC-CCCcc
Q 028394 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRL----NNLKFLYLDYNH-FNNSI 147 (209)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~l----~~L~~L~Ls~N~-l~g~i 147 (209)
-++++||+++..++..+- ..+..+++|+.|+|+++. ++.. +...++.+ ++|++|+|+++. +|..=
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 479999999988764332 235679999999999985 5432 12225554 479999999975 87644
Q ss_pred hhhhcCCCCCCEEeccCCc
Q 028394 148 FSSLGGLSSLRNLSLIGNR 166 (209)
Q Consensus 148 P~~l~~l~~L~~L~L~~N~ 166 (209)
=..+.++++|++|++++..
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 4567889999999998764
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.39 E-value=0.00034 Score=50.39 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=32.2
Q ss_pred EEEcCCCCCC--cccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCC
Q 028394 78 KLDLRDTRNW--ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN 144 (209)
Q Consensus 78 ~L~L~~~~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (209)
.++.++++++ .++. .+ -++|+.|+|++|+|+ .+|.. .|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~------~l--p~~l~~L~Ls~N~l~-~l~~~---~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT------AF--PVDTTELVLTGNNLT-ALPPG---LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS------CC--CTTCSEEECTTSCCS-SCCTT---TGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC------CC--CcCCCEEECCCCcCC-ccChh---hhhhccccCEEEecCCCee
Confidence 5677777665 4432 11 125677777777776 34443 2556666777777777653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.21 E-value=0.00025 Score=59.91 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=62.5
Q ss_pred CCCCCCEEEccC--ceeccccCCCcc-hhc--CCCCCCcEEecccCCCCCcchhhhc---CCCCCCEEeccCCccccc--
Q 028394 101 PFQQLESLYLIG--NNIAGCVENEGL-DTL--SRLNNLKFLYLDYNHFNNSIFSSLG---GLSSLRNLSLIGNRLIGS-- 170 (209)
Q Consensus 101 ~l~~L~~L~Ls~--N~l~g~ip~~~~-~~~--~~l~~L~~L~Ls~N~l~g~iP~~l~---~l~~L~~L~L~~N~l~G~-- 170 (209)
.+++|+.|+|+. |...|....... ..+ ..+++|++|+|.+|.+++..+..+. .+++|++|+|+.|.+++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 577888888753 222121000000 002 3478899999988888765555443 577899999999988763
Q ss_pred --cCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394 171 --IDIKGKYASTLFPCPIFCGSYFTEQLEVLIR 201 (209)
Q Consensus 171 --iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~ 201 (209)
++..+.++.+|.. ..+..|.++...-..+.
T Consensus 297 ~~L~~~L~~l~~L~~-L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKF-INMKYNYLSDEMKKELQ 328 (362)
T ss_dssp HHHHTTHHHHTTCSE-EECCSBBCCHHHHHHHH
T ss_pred HHHHhhcccCCcceE-EECCCCcCCHHHHHHHH
Confidence 5555566677764 66777877765444443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.14 E-value=7.3e-05 Score=63.24 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----chhhhcCCCCCCEEeccCCccccc
Q 028394 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS 170 (209)
Q Consensus 101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~G~ 170 (209)
.+++|++|+|.+|.+....+.. ......+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 4789999999999987554332 11124688999999999999874 455556789999999999998754
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.48 E-value=0.0014 Score=49.70 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCC-CCCcchhhhcCC----CCCCEEeccCCc-cccccCCCCc
Q 028394 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGL----SSLRNLSLIGNR-LIGSIDIKGK 176 (209)
Q Consensus 103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~L~~N~-l~G~iP~~~~ 176 (209)
.+|+.||++++.++.. +...+..+++|++|+|+++. ++..-=..++.+ ++|++|+|+++. ++-.==..+.
T Consensus 61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4799999999987532 33348899999999999995 775444456664 479999999974 7643223345
Q ss_pred ccCCCCCCCccCCCC
Q 028394 177 YASTLFPCPIFCGSY 191 (209)
Q Consensus 177 ~l~~l~~~~~~~~n~ 191 (209)
++.+|.. ..+.++.
T Consensus 137 ~~~~L~~-L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKY-LFLSDLP 150 (176)
T ss_dssp GCTTCCE-EEEESCT
T ss_pred cCCCCCE-EECCCCC
Confidence 5666654 4444443
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.39 E-value=0.0056 Score=43.85 Aligned_cols=57 Identities=16% Similarity=0.052 Sum_probs=45.9
Q ss_pred CEEEccCceec-cccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394 106 ESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI 168 (209)
Q Consensus 106 ~~L~Ls~N~l~-g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 168 (209)
..++-+++.++ ..+|.. + .++|++|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~----l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA----F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC----C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC----C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 357754 3 246899999999999666667889999999999999875
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.17 E-value=0.013 Score=49.82 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=37.0
Q ss_pred CccccCCCCCCEEEccCceec----cccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCC
Q 028394 96 ASLFTPFQQLESLYLIGNNIA----GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN 165 (209)
Q Consensus 96 ~~~~~~l~~L~~L~Ls~N~l~----g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N 165 (209)
...|.++++|+.+++.+|.+. ..|+.. .|.++++|+.+++. +.++-.-...|.++++|+.+++..|
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 345666777777777776653 123332 25666666666666 3354223335566666666666433
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.16 E-value=0.0026 Score=49.18 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----c
Q 028394 73 TGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----I 147 (209)
Q Consensus 73 ~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----i 147 (209)
...++.|+|+++ .+..-+...+ ...+..-+.|+.|+|++|.+...--...-..+..-+.|++|+|+.|+++.. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 457889999885 6642221101 112444578999999999986432222011134457899999999999753 3
Q ss_pred hhhhcCCCCCCEEeccCC
Q 028394 148 FSSLGGLSSLRNLSLIGN 165 (209)
Q Consensus 148 P~~l~~l~~L~~L~L~~N 165 (209)
-..+..-+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 334555567999999865
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.04 E-value=0.017 Score=49.21 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=54.1
Q ss_pred cCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc
Q 028394 94 MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG 169 (209)
Q Consensus 94 ~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G 169 (209)
++...|.++++|+.+++.+ .++ .|+.. .|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+.-
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~-~I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIR-ILGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCC-EECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred ECHHHhhCCccCCeEEeCC-ceE-EEhhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 4456788999999999995 465 56554 3888999999999655 664445678899 99999999998764
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.25 E-value=0.0088 Score=46.16 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=50.3
Q ss_pred ccCCCCCCEEEccCc-eeccccCCCcchhcCCCCCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCccccc
Q 028394 99 FTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS 170 (209)
Q Consensus 99 ~~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G~ 170 (209)
+.+-+.|+.|+|++| .+...--......+..-+.|+.|+|++|++.. .+-..+..-+.|++|+|+.|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 344578999999986 66421000001226667889999999999974 3444555668999999999999754
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.85 E-value=0.21 Score=41.77 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=46.3
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC-CC
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KG 175 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~-~~ 175 (209)
..+..+.+|+.+.+..+ ++ .|++. .|.++++|+.+++..+ ++-.-..+|.++++|+.+++..| ++ .|+. .+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~-~I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF 362 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VK-FIGEE---AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAF 362 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTB
T ss_pred ccccccccccccccccc-cc-eechh---hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHh
Confidence 34666777888877654 33 34433 2677777888877643 55222346777788888877655 44 4443 33
Q ss_pred cccCCCC
Q 028394 176 KYASTLF 182 (209)
Q Consensus 176 ~~l~~l~ 182 (209)
.++.+|.
T Consensus 363 ~~C~~L~ 369 (394)
T 4fs7_A 363 QGCINLK 369 (394)
T ss_dssp TTCTTCC
T ss_pred hCCCCCC
Confidence 4444443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.81 E-value=0.41 Score=40.00 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=18.2
Q ss_pred cCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCc
Q 028394 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR 166 (209)
Q Consensus 127 ~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ 166 (209)
|.++++|+.+.+..+ ++-.-..+|.++++|+.+++.+|.
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 445555555555432 331222345555555555555443
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.67 E-value=0.74 Score=38.40 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=50.1
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC-CC
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KG 175 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~-~~ 175 (209)
..|.++..|+.+.+.. .++ .|+.. .|.++.+|+.+++..+ ++-.-..+|.++++|+.+.+..+ ++ .|+. .+
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~-~I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF 353 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RIT-ELPES---VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAF 353 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGG
T ss_pred cccccccccccccCCC-ccc-ccCce---eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHh
Confidence 3466677777777753 333 45544 3778888999888754 55233456888899999988654 44 4543 34
Q ss_pred cccCCCCC
Q 028394 176 KYASTLFP 183 (209)
Q Consensus 176 ~~l~~l~~ 183 (209)
.++++|..
T Consensus 354 ~~C~~L~~ 361 (394)
T 4gt6_A 354 SNCTALNN 361 (394)
T ss_dssp TTCTTCCE
T ss_pred hCCCCCCE
Confidence 55566653
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.45 E-value=0.32 Score=40.28 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=34.3
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccC
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 164 (209)
.+..+..|+.+.+..+ +. .++.. .+.++++|+.+.+.++.++-.-...|.++++|+.+.+..
T Consensus 258 aF~~~~~l~~i~l~~~-i~-~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VK-TVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTCTTCCEEEECCC-CS-EECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccceeehhcccccccc-ce-ecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 4555666666666443 22 23332 255666666666666666533334566666666666654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.44 E-value=1.3 Score=36.46 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCC
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN 165 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N 165 (209)
..|..+.+|+.+.+.++.++ .|++. .|.++.+|+.++|..+ ++-.-..+|.++++|+.+.+..+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIE-TLEPR---VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccc-eehhh---hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 35677888888888877776 45543 3778888888888654 55222346788888888877543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.97 E-value=1.4 Score=36.66 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=28.1
Q ss_pred cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEecc
Q 028394 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163 (209)
Q Consensus 98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 163 (209)
.|.++.+|+.+++..+ ++ .|+.. .|.++++|+.+++..| ++-.-..+|.++++|+.+++.
T Consensus 315 aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VE-EIGKR---SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hhcCCCCCCEEEeCCc-cc-EEhHH---hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 3445555555555433 32 23322 2455555555555444 332222345555555555554
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=36.93 E-value=11 Score=17.58 Aligned_cols=11 Identities=27% Similarity=0.897 Sum_probs=8.0
Q ss_pred CCCCccccceE
Q 028394 58 YSDCCQWERVE 68 (209)
Q Consensus 58 ~~~~C~W~gv~ 68 (209)
....|+|.|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 34579999875
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.62 E-value=81 Score=20.66 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=21.1
Q ss_pred ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEeccc
Q 028394 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY 140 (209)
Q Consensus 97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~ 140 (209)
..|.++..|+.+.+..+ ++ .|... .|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~-~Ig~~---aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IG-LLYDG---MFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SS-CCCTT---SSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hh-eEcHH---HHhccCCccEEEEcC
Confidence 45666777777766543 22 22221 256666666666543
Done!