Query 028395
Match_columns 209
No_of_seqs 168 out of 1132
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 10:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0432 Uncharacterized conser 100.0 2.7E-50 5.9E-55 327.6 15.2 128 61-193 1-134 (137)
2 TIGR00149 TIGR00149_YbjQ secon 100.0 1.3E-45 2.8E-50 298.0 14.6 122 67-193 2-128 (132)
3 PF01894 UPF0047: Uncharacteri 100.0 1.1E-44 2.4E-49 287.7 10.9 112 78-193 1-116 (118)
4 KOG3267 Uncharacterized conser 100.0 6.5E-41 1.4E-45 266.7 9.0 124 65-189 1-124 (138)
5 COG0527 LysC Aspartokinases [A 25.3 2.1E+02 0.0046 27.8 6.4 103 24-130 268-371 (447)
6 PLN02551 aspartokinase 18.8 5.4E+02 0.012 25.5 7.8 87 24-116 327-414 (521)
7 PF07894 DUF1669: Protein of u 18.7 2.1E+02 0.0046 26.5 4.7 54 68-135 121-177 (284)
8 TIGR03820 lys_2_3_AblA lysine- 15.8 2E+02 0.0044 27.8 4.0 45 78-130 228-273 (417)
9 PF00688 TGFb_propeptide: TGF- 15.6 2.3E+02 0.0049 23.3 3.9 38 64-103 164-201 (238)
10 PF03460 NIR_SIR_ferr: Nitrite 15.5 93 0.002 21.4 1.3 14 170-183 38-51 (69)
No 1
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.7e-50 Score=327.56 Aligned_cols=128 Identities=41% Similarity=0.631 Sum_probs=121.0
Q ss_pred CeEEEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCC
Q 028395 61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (209)
Q Consensus 61 M~~~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~ 139 (209)
|+|+|++|+|+|+++ +++|||++|+++|++ ||+++|+|+||++||||||+||| +||+|++||+++|++|+|++.
T Consensus 1 m~~~~~~l~v~T~~r~~~vdIT~ev~~~v~e--sgv~~Gl~~vf~~HtTaal~inE-~ep~l~~Di~~~l~~lvP~~~-- 75 (137)
T COG0432 1 MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINE-AEPGLKEDIERFLEKLVPEGA-- 75 (137)
T ss_pred CceEEEEEEEeccCccceEEchHHHHHHHHH--cCCccceEEEEecCcceEEEEec-CCCcHHHHHHHHHHHhCCCCC--
Confidence 789999999999987 999999999999998 99999999999999999999999 699999999999999999985
Q ss_pred CceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCC-ceeeEE
Q 028395 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGF-RNYSLS 193 (209)
Q Consensus 140 ~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~-R~v~~~ 193 (209)
.|+|+.+|+|||+|||||+|+|+|++|||.||+|.|||||+|||+ ++. |+|+|.
T Consensus 76 ~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~dg~r~~R~v~v~ 134 (137)
T COG0432 76 GYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEFDGPRHRRRVVVK 134 (137)
T ss_pred CcccccCCCCchHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEecCCCCccEEEEE
Confidence 599999999999999999999999999999999999999999874 344 777775
No 2
>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme. Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.
Probab=100.00 E-value=1.3e-45 Score=298.00 Aligned_cols=122 Identities=38% Similarity=0.577 Sum_probs=111.6
Q ss_pred EEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeCc
Q 028395 67 TVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL 145 (209)
Q Consensus 67 tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~~ 145 (209)
+|++.|.+ ++++|||++|+++|++ ||+++|+|+||++||||||++|||+||+|+.||+++|++|+|++. .|+|+
T Consensus 2 ~~~~~t~~~~~~~dIT~~V~~~v~~--s~i~~G~~~v~~~HTTa~l~inE~~dp~l~~Dl~~~l~~lvP~~~--~y~H~- 76 (132)
T TIGR00149 2 ELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHDIERFFERLVPDDG--NYEHD- 76 (132)
T ss_pred EEEEEcCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEecCCCccHHHHHHHHHHHHCCCCC--Ccccc-
Confidence 47777765 5999999999999998 999999999999999999999999999999999999999999874 59998
Q ss_pred cCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395 146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS 193 (209)
Q Consensus 146 eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~ 193 (209)
+++|||+|||||+|+|+|++|||.||+|.|||||+|||. ++.|+|++.
T Consensus 77 ~~~~n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~Dg~r~R~v~v~ 128 (132)
T TIGR00149 77 EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEFDGPRTRRIIVK 128 (132)
T ss_pred CCCCCHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEECCCCCCcEEEEE
Confidence 889999999999999999999999999999999999874 356776553
No 3
>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast.; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.
Probab=100.00 E-value=1.1e-44 Score=287.66 Aligned_cols=112 Identities=44% Similarity=0.716 Sum_probs=96.4
Q ss_pred EeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeCccCCCChhhhhhh
Q 028395 78 HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157 (209)
Q Consensus 78 ~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~~eG~dN~~AHIKS 157 (209)
||||++|+++|++ ||+++|+|+||++||||||++|||+||+|++||+++|++|||++. .|+|+.+|++||+||+||
T Consensus 1 idIT~~V~~~v~~--s~i~~Gl~~v~~~HTTaal~inE~~dp~v~~Dl~~~l~~lvP~~~--~y~H~~~~~~n~~aHlks 76 (118)
T PF01894_consen 1 IDITEEVREAVEE--SGIRNGLVHVFVPHTTAALTINENADPDVRRDLLEALERLVPEDD--PYRHNEEGPDNAPAHLKS 76 (118)
T ss_dssp EE-HHHHHHHHHH--HT-SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHS-TTS--T-GGGCTT-STHHHHHHH
T ss_pred CcchHHHHHHHHH--hCCcceEEEEEeCCCeEEEEEeecCChhHHHhHHHHHHHhCCCCC--ceEeCCccccCccHHHHH
Confidence 7999999999998 999999999999999999999999999999999999999999984 699999999999999999
Q ss_pred hccCceEEEEeeCCeecccccceEee----ecCCceeeEE
Q 028395 158 SMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLS 193 (209)
Q Consensus 158 sLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~ 193 (209)
+|+|+|++|||.||+|.|||||+||| +++.|++.+.
T Consensus 77 ~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~dgpr~R~v~v~ 116 (118)
T PF01894_consen 77 SLIGPSLTVPVHDGKLALGTWQGIYLVEFDGPRERTVVVQ 116 (118)
T ss_dssp HHH-SEEEEEEETTEE---TTEEEEEEESS-SSEEEEEEE
T ss_pred HhcCCeEEEEEECCEEccCCcCEEEEEECCCCCeEEEEEE
Confidence 99999999999999999999999986 3467777764
No 4
>KOG3267 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.5e-41 Score=266.67 Aligned_cols=124 Identities=65% Similarity=1.141 Sum_probs=117.7
Q ss_pred EEEEEEcCCCCeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeC
Q 028395 65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT 144 (209)
Q Consensus 65 ~~tItV~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~ 144 (209)
|+.|++...++|++.||+++.+.++++++.+..|++++|.+||+|+|+||||+||+++.|++++|+|+||++.+.+|+|.
T Consensus 1 qk~itl~~~~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqhtsaaltinen~d~d~qad~~~~ldkivpe~nsa~~rht 80 (138)
T KOG3267|consen 1 QKIITLDPLRKGCHIITNDILKEIREDLKDFNCGLAHFFIQHTSAALTINENWDADTQADMEDFLDKIVPEGNSAGWRHT 80 (138)
T ss_pred CceEecCcccCccEEecHHHHHHHHHHHhhccccceeeeeeccceeeEecccCCcchhhhHHHHHHhhCcCCCCcccccc
Confidence 57899998888999999999999988889999999999999999999999999999999999999999999877789999
Q ss_pred ccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeeecCCce
Q 028395 145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRN 189 (209)
Q Consensus 145 ~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~~~~R~ 189 (209)
.||+||||||+||+|+|+++||||.+|||.|||||+|.+ +|+|.
T Consensus 81 ~eg~ddmpahikssl~g~qltipit~gklslgtwq~i~l-~e~r~ 124 (138)
T KOG3267|consen 81 AEGLDDMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQL-AEFRD 124 (138)
T ss_pred ccCcccchhhhhhccccceEEEEeccCeecccccccchh-hhhhc
Confidence 999999999999999999999999999999999999987 56654
No 5
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=25.27 E-value=2.1e+02 Score=27.76 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCceeeeeeeecCCCCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEE
Q 028395 24 SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHL 102 (209)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~~~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~V 102 (209)
...|++|++.+.+. ..||+-+....+.. .....-...-.+-.|+|.... .+.+-+-.+|-..+++ .+|.--++.-
T Consensus 268 ~~Ip~~i~~t~~p~-~~GTlI~~~~~~~~-~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~--~~i~v~~I~q 343 (447)
T COG0527 268 SGIPLRIKNTFNPD-APGTLITAETESDE-PVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAE--AGINVDLITQ 343 (447)
T ss_pred cCCcEEEEecCCCC-CCceEEecCCcCCC-CceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHH--cCCcEEEEEe
Confidence 45899999988844 26898665543322 111111111123346666544 2456678899999988 7776655555
Q ss_pred EecccceEEEEeecCCcchHHHHHHHHh
Q 028395 103 FLLHTSASLTINENYDSDVRDDTETFLN 130 (209)
Q Consensus 103 f~~HTTAsLtInEn~DP~l~~Dl~~~L~ 130 (209)
-.-+.+-.+++.+..-+...+-+++.+.
T Consensus 344 ~~~~~~i~~~v~~~~~~~a~~~l~~~~~ 371 (447)
T COG0527 344 SISEVSISFTVPESDAPRALRALLEEKL 371 (447)
T ss_pred ccCCCeEEEEEchhhHHHHHHHHHHHHh
Confidence 5556776677766522444444444443
No 6
>PLN02551 aspartokinase
Probab=18.76 E-value=5.4e+02 Score=25.47 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=51.3
Q ss_pred CCCceeeeeeeecCCCCCCccCCCCCCCCCCCCCCCCCeEEEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEE
Q 028395 24 SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHL 102 (209)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~V 102 (209)
...|+||++.|.+. ..||+-......+ ......-..+--+..|+|+..+. +-..+-.+|-+.+++ .+|.-.++.
T Consensus 327 ~~Ipi~vknt~~p~-~~GT~I~~~~~~~-~~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~--~~I~Vd~Is- 401 (521)
T PLN02551 327 GDIPVRVKNSYNPT-APGTLITKTRDMS-KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFED--LGISVDVVA- 401 (521)
T ss_pred CCceEEEEecCCCC-CCCcEEecccccC-CCcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHH--cCCcEEEEe-
Confidence 45799999988743 3578653322111 11111111122234567766542 556678889999998 888877773
Q ss_pred EecccceEEEEeec
Q 028395 103 FLLHTSASLTINEN 116 (209)
Q Consensus 103 f~~HTTAsLtInEn 116 (209)
+-..+-++++.+.
T Consensus 402 -sSe~sIs~~v~~~ 414 (521)
T PLN02551 402 -TSEVSISLTLDPS 414 (521)
T ss_pred -ccCCEEEEEEehh
Confidence 3346677888764
No 7
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=18.72 E-value=2.1e+02 Score=26.50 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=40.6
Q ss_pred EEEcCCC--CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHH-hhhCCC
Q 028395 68 VTLPPLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL-NKIVPE 135 (209)
Q Consensus 68 ItV~T~~--r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L-~rLVP~ 135 (209)
++|-+.. .+...|-+-|++.|++ .+.--||++.-+-|.++..||.++- +|-||-
T Consensus 121 ~~vy~qPp~~~~p~IKE~vR~~I~~--------------A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpV 177 (284)
T PF07894_consen 121 ATVYFQPPKDGQPHIKEVVRRMIQQ--------------AQKVIAIVMDVFTDVDIFCDLLEAANKRGVPV 177 (284)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHH--------------hcceeEEEeeccccHHHHHHHHHHHHhcCCcE
Confidence 4454443 4667888999999887 2334567777888999999999988 888885
No 8
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=15.78 E-value=2e+02 Score=27.83 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=28.1
Q ss_pred EeCcHHHHHHHhhh-ccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHh
Q 028395 78 HLITPKIVKEIAQD-LSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLN 130 (209)
Q Consensus 78 ~dIT~eV~~~V~~~-~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~ 130 (209)
-.||+++.+++++. ..||.-|.=.|...+ ||. ++.++.+|.+.|-
T Consensus 228 ~Eit~~a~~Al~~L~~aGI~l~nQsVLLkG------VND--~~~~l~~L~~~L~ 273 (417)
T TIGR03820 228 REITASSKKALAKLADAGIPLGNQSVLLAG------VND--CPRIMKKLVHKLV 273 (417)
T ss_pred HhChHHHHHHHHHHHHcCCEEEeeceEECC------cCC--CHHHHHHHHHHHH
Confidence 35799999998763 245444443343333 444 7888888877664
No 9
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins. Transforming growth factor beta is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. The decapentaplegic protein acts as an extracellular morphogen responsible for the proper development of the embryonic dorsal hypoderm, for viability of larvae and for cell viability of the epithelial cells in the imaginal disks. Bone morphogenetic protein induces cartilage and bone formation and may be responsible for epithelial osteogenesis in some organisms.; GO: 0008083 growth factor activity, 0040007 growth; PDB: 3RJR_A.
Probab=15.62 E-value=2.3e+02 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCCeEEeCcHHHHHHHhhhccCccccEEEEE
Q 028395 64 AQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLF 103 (209)
Q Consensus 64 ~~~tItV~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf 103 (209)
..+.|.....+.-.+|||..|++++.. .....||..-.
T Consensus 164 ~s~~v~~~~~gW~~~dvt~~v~~W~~~--~~~n~gl~l~~ 201 (238)
T PF00688_consen 164 DSRTVDPSDSGWVSFDVTSAVRRWLRN--PEKNLGLELEV 201 (238)
T ss_dssp EEEEE---S--EEEEE-HHHHHHHHH-----S-EEEEEEE
T ss_pred eeeeeccccCCceeEhHHHHHHHHHhC--CCCCccEEEEE
Confidence 344444444445678999999999997 55567865544
No 10
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=15.53 E-value=93 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.0
Q ss_pred CCeecccccceEee
Q 028395 170 DGQLNMGTWQVCRN 183 (209)
Q Consensus 170 dGkL~LGTWQ~I~~ 183 (209)
+|.+.|.+||+|++
T Consensus 38 ~~~irlT~~Q~l~l 51 (69)
T PF03460_consen 38 DGEIRLTTRQNLQL 51 (69)
T ss_dssp TSEEEEETTSCEEE
T ss_pred CCeEEECCCCeEEE
Confidence 57899999999876
Done!