Query 028395
Match_columns 209
No_of_seqs 168 out of 1132
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6c_A AQ_2013 protein; NPPSFA 100.0 1.2E-50 4.3E-55 327.8 14.8 128 61-193 1-133 (137)
2 1vmj_A Hypothetical protein TM 100.0 2.4E-49 8.2E-54 325.3 15.7 132 60-194 12-148 (151)
3 1vph_A Hypothetical protein SS 100.0 7.6E-49 2.6E-53 321.8 12.9 128 60-193 12-145 (149)
4 2p6h_A Hypothetical protein; s 100.0 1.2E-48 4.1E-53 315.2 13.5 124 64-193 2-130 (134)
5 1ve0_A Hypothetical protein (S 100.0 1.9E-48 6.6E-53 314.0 14.7 126 61-194 1-131 (134)
6 1vmh_A Uncharacterized conserv 100.0 1E-46 3.5E-51 307.7 13.4 122 65-193 16-142 (144)
7 1vmf_A Hypothetical protein; s 100.0 3.9E-46 1.3E-50 304.6 14.5 124 64-193 12-141 (145)
8 2cu5_A Conserved hypothetical 100.0 7.8E-45 2.7E-49 291.7 11.8 118 67-193 6-127 (129)
9 4f02_C Eukaryotic translation 16.9 39 0.0013 19.9 0.6 20 67-86 2-21 (27)
10 2bp3_S Platelet glycoprotein I 15.7 69 0.0024 18.7 1.4 16 189-204 7-22 (26)
No 1
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=1.2e-50 Score=327.83 Aligned_cols=128 Identities=26% Similarity=0.417 Sum_probs=120.8
Q ss_pred CeEEEEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCC
Q 028395 61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (209)
Q Consensus 61 M~~~~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~ 139 (209)
|+++|++|+|+|++ ++++|||++|+++|++ +|+++|+|+||++||||||+|||| ||+|++||+++|++|||++.
T Consensus 1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 75 (137)
T 2p6c_A 1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP-- 75 (137)
T ss_dssp CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence 89999999999986 6999999999999998 999999999999999999999999 99999999999999999874
Q ss_pred CceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS 193 (209)
Q Consensus 140 ~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~ 193 (209)
+|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||. ++.|+|++.
T Consensus 76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~ 133 (137)
T 2p6c_A 76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQRPKRVVIK 133 (137)
T ss_dssp TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESSCSSCEEEEEE
T ss_pred CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECCCCCccEEEEE
Confidence 599999999999999999999999999999999999999999963 456777765
No 2
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Probab=100.00 E-value=2.4e-49 Score=325.30 Aligned_cols=132 Identities=27% Similarity=0.442 Sum_probs=122.0
Q ss_pred CCeEEEEEEEEcCC-CCeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCC
Q 028395 60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS 138 (209)
Q Consensus 60 ~M~~~~~tItV~T~-~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~ 138 (209)
-|+-|+++|+|+|. +++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|++||+++|++|||++..
T Consensus 12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~ 88 (151)
T 1vmj_A 12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY 88 (151)
T ss_dssp -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence 48999999999996 47999999999999998 999999999999999999999999 999999999999999998731
Q ss_pred CCceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEEE
Q 028395 139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLSC 194 (209)
Q Consensus 139 ~~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~~ 194 (209)
..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+||| +++.|+|++..
T Consensus 89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg~r~R~V~v~i 148 (151)
T 1vmj_A 89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLVKI 148 (151)
T ss_dssp GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSSCEEEEEEE
T ss_pred CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCeeEEEEEE
Confidence 169999999999999999999999999999999999999999996 45778887763
No 3
>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1
Probab=100.00 E-value=7.6e-49 Score=321.78 Aligned_cols=128 Identities=24% Similarity=0.400 Sum_probs=118.8
Q ss_pred CCeEEEEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCC
Q 028395 60 NPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS 138 (209)
Q Consensus 60 ~M~~~~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~ 138 (209)
-|++|+++|+|+|.+ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|++||+++|++|||+++
T Consensus 12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~- 87 (149)
T 1vph_A 12 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR- 87 (149)
T ss_dssp CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred eeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC-
Confidence 499999999999987 6999999999999998 999999999999999999999999 99999999999999999874
Q ss_pred CCceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cC-CceeeEE
Q 028395 139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LG-FRNYSLS 193 (209)
Q Consensus 139 ~~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~-~R~v~~~ 193 (209)
+|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||. ++ .|+|++.
T Consensus 88 -~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~dg~r~~R~v~v~ 145 (149)
T 1vph_A 88 -SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVE 145 (149)
T ss_dssp -CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEEE
T ss_pred -CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCCCeEEEEE
Confidence 5999988 9999999999999999999999999999999999973 22 4556554
No 4
>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}
Probab=100.00 E-value=1.2e-48 Score=315.20 Aligned_cols=124 Identities=27% Similarity=0.445 Sum_probs=116.4
Q ss_pred EEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCce
Q 028395 64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK 142 (209)
Q Consensus 64 ~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~ 142 (209)
+|++|+|+|+++ +++|||++|+++|++ +|+++|+|+||++||||||+|||| ||+|++||+++|++|||++. +|+
T Consensus 2 ~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y~ 76 (134)
T 2p6h_A 2 ETGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PWK 76 (134)
T ss_dssp EEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SCG
T ss_pred eEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Ccc
Confidence 689999999875 999999999999998 999999999999999999999999 99999999999999999874 699
Q ss_pred eCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEE
Q 028395 143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLS 193 (209)
Q Consensus 143 H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~ 193 (209)
|++| +|||+|||||+|+|+|++|||.||+|.|||||+||| +++.|+|++.
T Consensus 77 H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~ 130 (134)
T 2p6h_A 77 HNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPRERTVNLL 130 (134)
T ss_dssp GGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEE
T ss_pred ccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEECCCCCceEEEEE
Confidence 9998 999999999999999999999999999999999996 3466777775
No 5
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-48 Score=314.02 Aligned_cols=126 Identities=27% Similarity=0.456 Sum_probs=117.7
Q ss_pred CeEEEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCC
Q 028395 61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (209)
Q Consensus 61 M~~~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~ 139 (209)
|+++|++|+|+|+++ +++|||++|+++|+ |+++|+|+||++||||||+|||| ||+|++||+++|++|+|++.
T Consensus 1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 73 (134)
T 1ve0_A 1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG-- 73 (134)
T ss_dssp CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence 899999999999875 99999999999995 89999999999999999999999 99999999999999999874
Q ss_pred CceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEEE
Q 028395 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLSC 194 (209)
Q Consensus 140 ~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~~ 194 (209)
.|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+||| +++.|+|++..
T Consensus 74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i 131 (134)
T 1ve0_A 74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGPRTRTVLVKS 131 (134)
T ss_dssp CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEEE
T ss_pred CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEECCCCCeeEEEEEE
Confidence 5999998 999999999999999999999999999999999996 34677887753
No 6
>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A
Probab=100.00 E-value=1e-46 Score=307.73 Aligned_cols=122 Identities=34% Similarity=0.439 Sum_probs=112.6
Q ss_pred EEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCcee
Q 028395 65 QKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143 (209)
Q Consensus 65 ~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H 143 (209)
.++|+|+|.+ ++++|||++|+++|++ +|+++|+|+||++||||||+||||+||+|++||+++|++|||++. .|+|
T Consensus 16 ~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H 91 (144)
T 1vmh_A 16 VIEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKH 91 (144)
T ss_dssp -CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCC
T ss_pred cEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--Cccc
Confidence 3579999985 6999999999999998 999999999999999999999999999999999999999999874 5999
Q ss_pred CccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEE
Q 028395 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLS 193 (209)
Q Consensus 144 ~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~ 193 (209)
+ +|||+|||||+|+|+|++|||.||+|.|||||+||| +++.|+|++.
T Consensus 92 ~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~R~v~v~ 142 (144)
T 1vmh_A 92 V---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVK 142 (144)
T ss_dssp T---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCSCEEEEEEE
T ss_pred C---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEE
Confidence 7 789999999999999999999999999999999996 3466777765
No 7
>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1
Probab=100.00 E-value=3.9e-46 Score=304.56 Aligned_cols=124 Identities=32% Similarity=0.429 Sum_probs=112.8
Q ss_pred EEEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCce
Q 028395 64 AQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK 142 (209)
Q Consensus 64 ~~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~ 142 (209)
..++|+|.|.+ ++++|||++|+++|++ +|+++|+|+||++||||||+||||+||+|++||+++|++|||++. ..|+
T Consensus 12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~ 88 (145)
T 1vmf_A 12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR 88 (145)
T ss_dssp CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence 45789999986 6999999999999998 999999999999999999999999999999999999999999874 2699
Q ss_pred eCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cC-CceeeEE
Q 028395 143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LG-FRNYSLS 193 (209)
Q Consensus 143 H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~-~R~v~~~ 193 (209)
| .|| ||+|||||+|+|+|++|||.||+|.|||||+|||. ++ .|+|++.
T Consensus 89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~~R~v~v~ 141 (145)
T 1vmf_A 89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVK 141 (145)
T ss_dssp C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCCCSCEEEEEE
T ss_pred c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEECcCCCCCcEEEEE
Confidence 9 455 99999999999999999999999999999999973 34 5777665
No 8
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}
Probab=100.00 E-value=7.8e-45 Score=291.74 Aligned_cols=118 Identities=31% Similarity=0.459 Sum_probs=105.3
Q ss_pred EEEEcCCCCeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeCcc
Q 028395 67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLE 146 (209)
Q Consensus 67 tItV~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~~e 146 (209)
+|+|++++++++|||++|+++|++ ++|+|+||++||||||+||||+||+|++||+++|+||+|+++ .+|+| .|
T Consensus 6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~-~~y~H-~e 78 (129)
T 2cu5_A 6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHR-PQDRH-LE 78 (129)
T ss_dssp EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCC-TTCCC-TT
T ss_pred EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC-CCcCc-CC
Confidence 577776668999999999999963 999999999999999999999999999999999999999872 25999 45
Q ss_pred CCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395 147 GPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS 193 (209)
Q Consensus 147 G~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~ 193 (209)
| ||+|||||+|+|+|++|||.||+|.|||||+|||. ++.|+|++.
T Consensus 79 G--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~ 127 (129)
T 2cu5_A 79 G--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVR 127 (129)
T ss_dssp S--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSEEEEEEEE
T ss_pred C--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEE
Confidence 5 99999999999999999999999999999999963 356677664
No 9
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=16.91 E-value=39 Score=19.93 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=14.4
Q ss_pred EEEEcCCCCeEEeCcHHHHH
Q 028395 67 TVTLPPLRRGCHLITPKIVK 86 (209)
Q Consensus 67 tItV~T~~r~~~dIT~eV~~ 86 (209)
+|.++-...|--|||+|+..
T Consensus 2 ~irirdpnqggkditeeims 21 (27)
T 4f02_C 2 TIRIRDPNQGGKDITEEIMS 21 (27)
T ss_pred cceecCccccchhhHHHHHh
Confidence 46666655677899998764
No 10
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=15.68 E-value=69 Score=18.72 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=12.1
Q ss_pred eeeEEEEEeeccccee
Q 028395 189 NYSLSCFLWSKSNFHV 204 (209)
Q Consensus 189 ~v~~~~~~~~~~~~~~ 204 (209)
+++-|.|||-+.|-.|
T Consensus 7 tfrsslflwvr~ng~~ 22 (26)
T 2bp3_S 7 TFRSSLFLWVRPNGRV 22 (26)
T ss_pred chhheEEEEEccCCee
Confidence 4556899999888655
Done!