BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028396
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1
Length = 198
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 151
D + V++K+ ++GD IGKTS +V YV G+ E S Q G+N + KT+ ++ I FS
Sbjct: 3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62
Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
IWD+GG + +P+ C DAVAILFMFDL+ + TLNSI WY +AR +N+
Sbjct: 63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNK 113
>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TEM1 PE=1 SV=1
Length = 245
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 157
V +++ L+GD Q+GKTS +VKYV N ++ Q G+N + + + ++ I FSI D+GG
Sbjct: 19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
+ +PIA + I+F+FDLT TL+SI WY +A N
Sbjct: 79 QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLN 122
>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2
SV=2
Length = 388
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 152
D V+ K LLGD +GKTSF+VKY N E L G+ L NK ++V G R+ I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244
Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
WD G R +DA A+L ++D+T++ T ++I W E R++ Q
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQ 294
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKT 140
E S FS YD ++ K+ LLGD +GKT F++++ + G++ NK
Sbjct: 17 ERSPPFSPNYD-----LTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKV 71
Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
+ V GAR+ IWD G R +DA A+L ++D+T++ + ++I W +E ++
Sbjct: 72 VTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEY 131
Query: 201 NQ--------GNKIEL 208
Q GNK ++
Sbjct: 132 AQRDVVIMLLGNKADV 147
>sp|Q29RR0|RAB26_BOVIN Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1
Length = 256
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 55 PAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKT 114
PA + R ++ P P+ G + R+ S G D V+ K+ L+GD +GKT
Sbjct: 21 PAANGPRPVRPGTAR--PGPEAPPNGPPQPGRS-SVGGGGDFYDVAFKVMLVGDSGVGKT 77
Query: 115 SFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172
+V++ + G++ NK + V G ++ IWD G R +DA
Sbjct: 78 CLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDA 137
Query: 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ--------GNKIE 207
A+L ++D+T++ + +SI W +E ++ Q GNK++
Sbjct: 138 HALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVD 180
>sp|Q9ULW5|RAB26_HUMAN Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3
Length = 256
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 73 APDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQ 130
PD G ++ R S G D V+ K+ L+GD +GKT +V++ +
Sbjct: 37 GPDAPPNGPLQPGRP-SLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS 95
Query: 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI 190
G++ NK L V G ++ +WD G R +DA A+L ++D+T++ + ++I
Sbjct: 96 TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI 155
Query: 191 VGWYSEARKWNQ--------GNKIE 207
W +E ++ Q GNK++
Sbjct: 156 QAWLTEIHEYAQHDVALMLLGNKVD 180
>sp|P51156|RAB26_RAT Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2
Length = 257
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
P P+ G + R S G D V+ K+ L+GD +GKT +V++ +
Sbjct: 37 PGPEAPPNGPPQSGRP-SLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 95
Query: 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
G++ NK L V G ++ IWD G R +DA A+L ++D+T++ + ++
Sbjct: 96 STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 155
Query: 190 IVGWYSEARKWNQ--------GNKIE 207
I W +E +++ Q GNK++
Sbjct: 156 IQAWLTEIQEYAQQDVVLMLLGNKVD 181
>sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3
Length = 223
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKT 140
E S S YD ++ K+ LLGD +GKT F++++ + G++ NK
Sbjct: 17 ERSPPCSPSYD-----LTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKV 71
Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
+ V G R+ IWD G R +DA A+L ++D+T++ + ++I W +E ++
Sbjct: 72 VTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEY 131
Query: 201 NQ--------GNKIEL 208
Q GNK ++
Sbjct: 132 AQRDVVIMLLGNKADM 147
>sp|Q504M8|RAB26_MOUSE Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=1 SV=1
Length = 260
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
P P+ G + R S G D V+ K+ L+GD +GKT +V++ +
Sbjct: 40 PGPEAPPNGPPQSIRP-SLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 98
Query: 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
G++ NK L V G ++ IWD G R +DA A+L ++D+T++ + ++
Sbjct: 99 STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 158
Query: 190 IVGWYSEARKWNQ--------GNKIE 207
I W +E +++ Q GNK++
Sbjct: 159 IQAWLTEIQEYAQQDVVLMLLGNKVD 184
>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Length = 223
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQ------GNKIEL 208
R PI +D+ + ++D+T + + W E RK N+ GNKI+L
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 134
>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Length = 223
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQ------GNKIEL 208
R PI +D+ + ++D+T + + W E RK N+ GNKI+L
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 134
>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Length = 225
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 19 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 78
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQ------GNKIEL 208
R PI +D+ + ++D+T + + W E RK N+ GNKI+L
Sbjct: 79 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 136
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G ER G++ KTL +QG R+ IWD G
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209
R + A + +D+T R + S+ W + RK+ N ++L+
Sbjct: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 128
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
V K+ LLG+ +GKTS V++Y N+ E++LQ + + K L + G RI +IWD
Sbjct: 15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQAS---FVEKRLNIGGKRIQLAIWD 71
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208
G R PI +D+ + ++D+T + + W E ++ G+K+ L
Sbjct: 72 TAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRM-LGDKVTL 124
>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Length = 222
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQ------GNKIEL 208
R PI +D+ + ++D+T + + W E RK N+ GNKI+L
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 134
>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Length = 222
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 16 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 75
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQ------GNKIEL 208
R PI +D+ + ++D+T + + W E RK N+ GNK++L
Sbjct: 76 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDL 133
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
G R P+ + A A + +FD+T++ + W E + QGN
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA--QGN 113
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
G R P+ + A A + +FD+T++ + W E + QGN
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQA--QGN 113
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
SD KI L+GD +GKTS ++++ N QE S+ M ++ NK +++ G IWD
Sbjct: 2 SDPDVFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
G R + A +L +D+T + T N++ W E +++
Sbjct: 62 TAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRY 107
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V + QE ++ G + TL V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTLAVNNATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
G R P+ + A A + ++D+TS + W E +K QGN
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQK--QGN 113
>sp|P41914|RAN_TETPY GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1
Length = 223
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 93 DTDSDLVS-LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAF 150
D D+V+ K+ L+GD +GKT+FV ++ G ++R + G+N+ N L I F
Sbjct: 3 DNKQDVVAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRF 62
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
+IWD G + A A + MFD+TSR T +I W+ +
Sbjct: 63 NIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKD 108
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G R G++ KTL +QG R+ IWD G
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209
R + A + +D++ R T S+ W + RK+ N ++L+
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLL 126
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V + QE ++ G + T+ V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTVSVNNATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
G R P+ + A A + ++D+TS +L W E +K QGN
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQK--QGN 113
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1
Length = 210
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G R G++ KTL +QG R+ IWD G
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209
R + A + +D++ R T S+ W + RK+ N ++L+
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLL 126
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSI 152
DSD+ KI L+GD +GKTS ++++ N QE S+ M ++ NK + + G I
Sbjct: 3 DSDV--FKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQI 60
Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
WD G R + A +L +D+T + T N++ W E +++
Sbjct: 61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRY 108
>sp|P41915|RAN_TETTH GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2
SV=1
Length = 225
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ L+GD +GKT+FV ++ G ++R + G+N+ N L I F+IWD
Sbjct: 9 VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTA 68
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A A + MFD+TSR T +I W+ +
Sbjct: 69 GQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKD 108
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--------GNKIEL 208
G R P+ + + A + ++D+T T +++ W E R+ GNK +L
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122
Query: 209 I 209
I
Sbjct: 123 I 123
>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1
SV=1
Length = 210
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 85 SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ 144
S + SGYD +S KI L+GD +GK+S +V ++ + E G++ K L V
Sbjct: 3 SSSGQSGYD-----LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG 57
Query: 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW--N 201
G R+ +IWD G R + A I+ ++D+T R T ++V W E + N
Sbjct: 58 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTN 117
Query: 202 Q-------GNKIE 207
Q GNK++
Sbjct: 118 QECVRMLVGNKVD 130
>sp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d OS=Arabidopsis thaliana GN=RABA2D PE=2
SV=1
Length = 217
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI L+GD +GKT+ + ++ NE S G+ +TL V+G + IWD G
Sbjct: 13 FKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
R + AV L ++D+T R T ++++ W E R N
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN 117
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
+++K+ LLG+ +GK+S V+++V ++ +E G + K + G I F IWD G
Sbjct: 11 LTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAG 70
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
R P+ ++A A L +FD+T+ + W E
Sbjct: 71 QERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEE 109
>sp|Q8MXS1|RAB18_CAEEL Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=3
SV=1
Length = 203
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGN--EQERSLQMAGLNLINKTLMVQGARIAF 150
D+ S L +LKI ++G+ +GK+S ++++V + + E++ + G++ ++ + G R+
Sbjct: 4 DSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATI-GVDFRVTSMAIDGNRVKL 62
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKI 206
+IWD G R P + A ++ ++D+TSR + + W E + + I
Sbjct: 63 AIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQEVDTYCTNDNI 118
>sp|P90726|RAB18_CAEBR Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18
PE=3 SV=1
Length = 202
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGN--EQERSLQMAGLNLINKTLMVQGARIAF 150
D+ S L +LKI ++G+ +GK+S ++++V + + E++ + G++ ++ + G R+
Sbjct: 4 DSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATI-GVDFRVTSMTIDGNRVKL 62
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKI 206
+IWD G R P + A ++ ++D+TSR + + W +E + + +
Sbjct: 63 AIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNV 118
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGA 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
I +WD G R +P +D+ A + ++D+T+ + W + R
Sbjct: 61 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR 112
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--------GNKIEL 208
G R P+ + + A + ++D+T T +++ W E R+ GNK +L
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARI 148
GY TD + L K+ L+GD +GK++ + ++ NE S G+ KTL V +
Sbjct: 3 GYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVV 62
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208
IWD G R + AV L ++D+T R T + W E R N + +
Sbjct: 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVM 122
Query: 209 I 209
+
Sbjct: 123 L 123
>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1
Length = 205
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIW 153
D L +LKI ++G+ +GK+S ++++ + + L G++ KT+ + G R +IW
Sbjct: 3 DDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIW 62
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
D G R P + A ++ ++D+T R T + W +E +
Sbjct: 63 DTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETY 109
>sp|Q8MYF2|RABJ_DICDI Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3
SV=1
Length = 256
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 102 KISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
K+ LLG +GKT+ ++YV G +R G + + +T+ ++G +I + IWD G R
Sbjct: 11 KVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDR 70
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--------GNKIEL 208
+ + A + +FD+T + T + + GW E + Q GNKI+L
Sbjct: 71 FRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDL 126
>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3
SV=1
Length = 207
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L K+ LGD +GKTS + +++ ++ + + Q G++ ++KT+ ++ + +WD
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKI 206
G R +P +D+ + ++D+ +R + + W E R G+ I
Sbjct: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVI 116
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L K+ LGD +GKTS + +++ ++ + + Q G++ ++KT+ ++ + +WD
Sbjct: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--------GNKI 206
G R +P +D+ + ++D+ SR + + W E R GNK
Sbjct: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKT 124
Query: 207 ELI 209
+L+
Sbjct: 125 DLV 127
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ N
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ N
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ N
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ N
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ N
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ N
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125
>sp|Q40520|RB11C_TOBAC Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1
Length = 222
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 88 FSSGYDTDSDLVS--LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ 144
+SGY S + K+ L+GD +GKT + ++ NE S G+ +TL++Q
Sbjct: 1 MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60
Query: 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
+ IWD G R + AV + ++D+T R T + I W E R
Sbjct: 61 HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELR 114
>sp|Q55FK2|RAB6_DICDI Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3
SV=1
Length = 208
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L K+ LGD +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD
Sbjct: 4 LSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKI 206
G R +P +D+ + ++D+T++ + + + W + R +GN +
Sbjct: 64 GQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRN-ERGNNV 112
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--------GNKIEL 208
G P+ + + A + ++D+T T +++ W E R+ GNK +L
Sbjct: 63 GQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122
Query: 209 I 209
I
Sbjct: 123 I 123
>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2
SV=1
Length = 216
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 90 SGYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
+GY + D L K+ L+GD +GK++ + ++ NE S G+ +TL V G
Sbjct: 2 AGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKV 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
+ IWD G R + AV L ++D+T R T ++ W E + N
Sbjct: 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPN 118
>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2
SV=2
Length = 214
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI L+GD +GK++ + ++ NE S G+ +TL V+G + IWD G
Sbjct: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGN 204
R + AV L ++D+T R T +++ W E R N
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSN 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,294,708
Number of Sequences: 539616
Number of extensions: 2556911
Number of successful extensions: 9735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 544
Number of HSP's that attempted gapping in prelim test: 9196
Number of HSP's gapped (non-prelim): 735
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)