Query 028396
Match_columns 209
No_of_seqs 255 out of 1517
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.7E-29 9.4E-34 205.2 12.3 115 95-209 8-123 (216)
2 2hup_A RAS-related protein RAB 99.9 3.9E-24 1.3E-28 171.1 12.0 112 98-209 27-139 (201)
3 2a5j_A RAS-related protein RAB 99.9 1.5E-23 5.2E-28 165.7 14.9 112 98-209 19-131 (191)
4 2gf9_A RAS-related protein RAB 99.9 5.3E-23 1.8E-27 162.1 16.8 111 99-209 21-132 (189)
5 2ew1_A RAS-related protein RAB 99.9 1.9E-23 6.6E-28 167.8 13.6 112 98-209 24-136 (201)
6 3q3j_B RHO-related GTP-binding 99.9 2.8E-23 9.4E-28 168.0 13.9 114 94-209 21-136 (214)
7 2fu5_C RAS-related protein RAB 99.9 1.9E-23 6.4E-28 163.3 12.3 111 99-209 7-118 (183)
8 1ek0_A Protein (GTP-binding pr 99.9 6.1E-23 2.1E-27 157.4 14.6 111 99-209 2-113 (170)
9 1r2q_A RAS-related protein RAB 99.9 7.3E-23 2.5E-27 157.0 14.5 113 97-209 3-116 (170)
10 3c5c_A RAS-like protein 12; GD 99.9 4.8E-23 1.6E-27 162.8 13.7 110 98-209 19-132 (187)
11 1z08_A RAS-related protein RAB 99.9 4.4E-23 1.5E-27 158.7 13.1 112 98-209 4-116 (170)
12 2oil_A CATX-8, RAS-related pro 99.9 8.9E-23 3E-27 161.1 15.0 113 97-209 22-135 (193)
13 2y8e_A RAB-protein 6, GH09086P 99.9 5E-23 1.7E-27 159.4 13.0 115 95-209 9-124 (179)
14 2efe_B Small GTP-binding prote 99.9 1.1E-22 3.8E-27 158.2 14.8 113 97-209 9-122 (181)
15 2g6b_A RAS-related protein RAB 99.9 1.4E-22 4.6E-27 157.6 15.0 113 97-209 7-121 (180)
16 2bcg_Y Protein YP2, GTP-bindin 99.9 1.9E-22 6.6E-27 160.9 16.1 112 98-209 6-118 (206)
17 1z0f_A RAB14, member RAS oncog 99.9 8.7E-23 3E-27 158.1 13.6 112 98-209 13-125 (179)
18 1gwn_A RHO-related GTP-binding 99.9 8.4E-23 2.9E-27 164.4 13.9 110 98-209 26-137 (205)
19 1z0j_A RAB-22, RAS-related pro 99.9 1.8E-22 6.1E-27 155.1 15.1 112 98-209 4-116 (170)
20 2p5s_A RAS and EF-hand domain 99.9 4.1E-23 1.4E-27 164.4 11.6 112 98-209 26-138 (199)
21 3tkl_A RAS-related protein RAB 99.9 1.5E-22 5.2E-27 159.5 14.8 112 98-209 14-126 (196)
22 3ihw_A Centg3; RAS, centaurin, 99.9 6.7E-23 2.3E-27 161.9 12.6 106 97-209 17-124 (184)
23 2il1_A RAB12; G-protein, GDP, 99.9 4.9E-23 1.7E-27 163.2 11.8 112 98-209 24-136 (192)
24 2bme_A RAB4A, RAS-related prot 99.9 1.2E-22 4E-27 158.9 13.8 112 98-209 8-120 (186)
25 3cpj_B GTP-binding protein YPT 99.9 1.6E-22 5.3E-27 164.0 14.9 112 98-209 11-123 (223)
26 3tw8_B RAS-related protein RAB 99.9 2.8E-22 9.5E-27 155.5 15.2 111 98-209 7-118 (181)
27 1z06_A RAS-related protein RAB 99.9 8.3E-23 2.8E-27 161.0 12.4 111 99-209 19-132 (189)
28 1g16_A RAS-related protein SEC 99.9 9.8E-23 3.4E-27 156.5 12.3 110 100-209 3-113 (170)
29 2hxs_A RAB-26, RAS-related pro 99.9 9E-23 3.1E-27 158.3 12.1 104 98-201 4-109 (178)
30 2q3h_A RAS homolog gene family 99.9 2.6E-22 9E-27 159.4 14.7 111 97-209 17-129 (201)
31 2iwr_A Centaurin gamma 1; ANK 99.9 1.8E-22 6.1E-27 157.0 13.3 106 98-209 5-113 (178)
32 3reg_A RHO-like small GTPase; 99.9 3.1E-22 1.1E-26 158.3 14.9 112 96-209 19-132 (194)
33 1m7b_A RND3/RHOE small GTP-bin 99.9 2.3E-22 7.7E-27 158.0 14.0 110 98-209 5-116 (184)
34 3t5g_A GTP-binding protein RHE 99.9 4.7E-22 1.6E-26 155.0 15.7 111 98-209 4-116 (181)
35 3dz8_A RAS-related protein RAB 99.9 5.8E-24 2E-28 168.1 4.8 112 98-209 21-133 (191)
36 2fg5_A RAB-22B, RAS-related pr 99.9 2.4E-22 8.2E-27 159.0 14.1 112 98-209 21-133 (192)
37 1zbd_A Rabphilin-3A; G protein 99.9 3.1E-22 1E-26 159.2 14.6 111 99-209 7-118 (203)
38 1wms_A RAB-9, RAB9, RAS-relate 99.9 2E-22 6.9E-27 156.2 13.1 113 97-209 4-121 (177)
39 2o52_A RAS-related protein RAB 99.9 1E-22 3.5E-27 162.5 11.6 112 98-209 23-135 (200)
40 2atx_A Small GTP binding prote 99.9 4E-22 1.4E-26 157.5 14.7 111 97-209 15-127 (194)
41 2j0v_A RAC-like GTP-binding pr 99.9 3.8E-22 1.3E-26 159.9 14.6 110 98-209 7-118 (212)
42 3kkq_A RAS-related protein M-R 99.9 3.5E-22 1.2E-26 156.1 14.0 112 97-209 15-128 (183)
43 3cbq_A GTP-binding protein REM 99.9 8.8E-23 3E-27 162.8 10.6 112 98-209 21-135 (195)
44 1z2a_A RAS-related protein RAB 99.9 2.8E-22 9.4E-27 153.7 12.9 110 99-209 4-114 (168)
45 3l0i_B RAS-related protein RAB 99.9 3.2E-23 1.1E-27 165.0 7.7 112 98-209 31-143 (199)
46 2fn4_A P23, RAS-related protei 99.9 7E-22 2.4E-26 153.2 15.1 111 98-209 7-119 (181)
47 1x3s_A RAS-related protein RAB 99.9 3.9E-22 1.3E-26 156.9 13.5 113 97-209 12-126 (195)
48 3oes_A GTPase rhebl1; small GT 99.9 3.4E-22 1.2E-26 159.2 13.4 112 97-209 21-134 (201)
49 4gzl_A RAS-related C3 botulinu 99.9 5.5E-22 1.9E-26 158.9 13.5 112 96-209 26-139 (204)
50 3cph_A RAS-related protein SEC 99.9 6.9E-22 2.4E-26 157.9 13.7 112 98-209 18-130 (213)
51 2nzj_A GTP-binding protein REM 99.9 5.6E-22 1.9E-26 153.2 12.6 111 99-209 3-116 (175)
52 3gj0_A GTP-binding nuclear pro 99.9 1.9E-22 6.3E-27 163.1 10.2 115 94-209 9-124 (221)
53 1ky3_A GTP-binding protein YPT 99.9 3.5E-22 1.2E-26 155.0 11.4 112 98-209 6-123 (182)
54 1c1y_A RAS-related protein RAP 99.9 8.4E-22 2.9E-26 150.8 12.6 110 99-209 2-113 (167)
55 2g3y_A GTP-binding protein GEM 99.9 3.9E-22 1.3E-26 162.0 11.2 113 97-209 34-150 (211)
56 1vg8_A RAS-related protein RAB 99.9 8E-22 2.7E-26 156.9 12.7 112 98-209 6-122 (207)
57 3q85_A GTP-binding protein REM 99.9 8.8E-22 3E-26 151.5 12.5 110 100-209 2-114 (169)
58 3bc1_A RAS-related protein RAB 99.9 1E-21 3.6E-26 153.7 13.0 112 98-209 9-132 (195)
59 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.4E-21 8.2E-26 151.0 14.7 110 98-209 3-114 (186)
60 2fv8_A H6, RHO-related GTP-bin 99.9 1.9E-21 6.3E-26 155.8 14.4 110 98-209 23-134 (207)
61 2yc2_C IFT27, small RAB-relate 99.9 1.6E-22 5.5E-27 160.6 8.0 112 98-209 18-137 (208)
62 3clv_A RAB5 protein, putative; 99.9 2.1E-21 7.3E-26 152.7 14.2 109 99-209 6-152 (208)
63 2gco_A H9, RHO-related GTP-bin 99.9 2.8E-21 9.6E-26 154.1 15.0 109 99-209 24-134 (201)
64 2j1l_A RHO-related GTP-binding 99.9 1.2E-21 4E-26 158.1 12.8 110 98-209 32-143 (214)
65 2a9k_A RAS-related protein RAL 99.9 1.6E-21 5.4E-26 151.9 12.8 112 97-209 15-128 (187)
66 2cjw_A GTP-binding protein GEM 99.9 2.5E-21 8.4E-26 154.0 14.1 111 99-209 5-119 (192)
67 3q72_A GTP-binding protein RAD 99.9 1.6E-21 5.4E-26 149.6 12.2 109 100-209 2-111 (166)
68 3bwd_D RAC-like GTP-binding pr 99.9 6.6E-22 2.3E-26 153.9 10.2 110 98-209 6-117 (182)
69 1kao_A RAP2A; GTP-binding prot 99.9 3.3E-21 1.1E-25 147.0 13.6 110 99-209 2-113 (167)
70 2f7s_A C25KG, RAS-related prot 99.9 3E-22 1E-26 161.0 7.9 112 98-209 23-146 (217)
71 3con_A GTPase NRAS; structural 99.9 4.4E-21 1.5E-25 150.8 14.3 111 98-209 19-131 (190)
72 4dsu_A GTPase KRAS, isoform 2B 99.9 5.4E-21 1.9E-25 149.3 14.7 110 99-209 3-114 (189)
73 1u8z_A RAS-related protein RAL 99.9 2.8E-21 9.6E-26 147.6 12.6 110 99-209 3-114 (168)
74 2bov_A RAla, RAS-related prote 99.9 3.7E-21 1.3E-25 152.7 13.6 112 97-209 11-124 (206)
75 1oix_A RAS-related protein RAB 99.9 8.7E-21 3E-25 150.5 15.4 111 98-208 27-138 (191)
76 3t1o_A Gliding protein MGLA; G 99.9 7E-22 2.4E-26 155.3 8.3 112 96-209 10-140 (198)
77 2atv_A RERG, RAS-like estrogen 99.9 6.3E-21 2.2E-25 151.1 12.6 110 98-209 26-137 (196)
78 2zej_A Dardarin, leucine-rich 99.8 7.2E-22 2.5E-26 155.5 6.8 109 100-209 2-117 (184)
79 1f6b_A SAR1; gtpases, N-termin 99.8 5.5E-21 1.9E-25 152.5 12.0 108 98-209 23-131 (198)
80 1zd9_A ADP-ribosylation factor 99.8 2.4E-21 8.1E-26 152.8 9.5 107 99-209 21-129 (188)
81 4djt_A GTP-binding nuclear pro 99.8 2.5E-21 8.7E-26 155.7 9.7 113 97-209 8-122 (218)
82 2h17_A ADP-ribosylation factor 99.8 4.9E-21 1.7E-25 149.9 11.0 107 99-209 20-127 (181)
83 2h57_A ADP-ribosylation factor 99.8 8E-21 2.7E-25 149.7 12.1 107 99-209 20-131 (190)
84 2ce2_X GTPase HRAS; signaling 99.8 1.6E-20 5.6E-25 142.8 13.3 110 99-209 2-113 (166)
85 2f9l_A RAB11B, member RAS onco 99.8 2E-20 6.8E-25 148.9 14.1 111 99-209 4-115 (199)
86 2erx_A GTP-binding protein DI- 99.8 1.1E-20 3.7E-25 145.1 12.0 109 100-209 3-114 (172)
87 1m2o_B GTP-binding protein SAR 99.8 1.7E-20 5.8E-25 148.6 13.3 108 98-209 21-129 (190)
88 4bas_A ADP-ribosylation factor 99.8 6E-21 2.1E-25 150.7 10.5 99 98-200 15-115 (199)
89 1r8s_A ADP-ribosylation factor 99.8 6.2E-21 2.1E-25 146.0 10.1 105 101-209 1-106 (164)
90 3llu_A RAS-related GTP-binding 99.8 1E-20 3.5E-25 150.2 11.5 110 97-209 17-134 (196)
91 1upt_A ARL1, ADP-ribosylation 99.8 1.7E-20 5.9E-25 144.2 12.0 107 99-209 6-113 (171)
92 1zj6_A ADP-ribosylation factor 99.8 1.9E-20 6.5E-25 147.1 11.4 107 99-209 15-122 (187)
93 1fzq_A ADP-ribosylation factor 99.8 1E-20 3.5E-25 148.6 9.6 107 99-209 15-122 (181)
94 2b6h_A ADP-ribosylation factor 99.8 2.6E-20 8.9E-25 147.7 11.8 108 98-209 27-135 (192)
95 2gf0_A GTP-binding protein DI- 99.8 1.7E-20 6E-25 148.0 10.4 110 99-209 7-119 (199)
96 2x77_A ADP-ribosylation factor 99.8 4.1E-20 1.4E-24 145.3 10.3 107 99-209 21-128 (189)
97 1ksh_A ARF-like protein 2; sma 99.8 6.2E-20 2.1E-24 143.7 11.2 108 98-209 16-124 (186)
98 1moz_A ARL1, ADP-ribosylation 99.8 5.2E-20 1.8E-24 143.4 9.8 108 98-209 16-124 (183)
99 3th5_A RAS-related C3 botulinu 99.7 1.7E-21 5.8E-26 155.4 0.0 111 97-209 27-139 (204)
100 2wkq_A NPH1-1, RAS-related C3 99.8 4.5E-19 1.6E-23 150.6 14.3 108 100-209 155-264 (332)
101 3r7w_B Gtpase2, GTP-binding pr 99.8 8.4E-20 2.9E-24 157.4 9.5 102 102-209 1-111 (331)
102 3c5h_A Glucocorticoid receptor 99.8 2.5E-20 8.5E-25 155.0 4.6 111 99-209 18-203 (255)
103 2fh5_B SR-beta, signal recogni 99.8 3.3E-19 1.1E-23 142.8 9.8 110 98-209 5-120 (214)
104 3lvq_E ARF-GAP with SH3 domain 99.8 8.2E-19 2.8E-23 158.4 12.2 109 97-209 319-428 (497)
105 3o47_A ADP-ribosylation factor 99.8 8.2E-19 2.8E-23 151.3 10.6 108 98-209 163-271 (329)
106 3r7w_A Gtpase1, GTP-binding pr 99.8 1.9E-18 6.6E-23 147.5 12.0 106 100-209 3-120 (307)
107 2lkc_A Translation initiation 99.7 1.3E-17 4.3E-22 129.1 11.5 86 98-185 6-92 (178)
108 2gj8_A MNME, tRNA modification 99.7 1.2E-17 4.1E-22 130.2 11.4 107 100-209 4-120 (172)
109 2wji_A Ferrous iron transport 99.7 4.6E-17 1.6E-21 125.7 13.1 102 100-209 3-113 (165)
110 1nrj_B SR-beta, signal recogni 99.7 7.7E-18 2.6E-22 135.2 6.6 103 98-209 10-125 (218)
111 2ged_A SR-beta, signal recogni 99.7 1.3E-17 4.3E-22 131.2 7.3 103 98-209 46-161 (193)
112 2wjg_A FEOB, ferrous iron tran 99.7 1.1E-16 3.6E-21 125.2 12.0 104 98-209 5-117 (188)
113 3dpu_A RAB family protein; roc 99.7 6.7E-18 2.3E-22 154.0 3.1 110 96-209 37-155 (535)
114 2qu8_A Putative nucleolar GTP- 99.6 6.5E-16 2.2E-20 125.4 10.6 108 99-209 28-147 (228)
115 2dyk_A GTP-binding protein; GT 99.6 4.8E-16 1.6E-20 118.1 8.5 86 101-188 2-96 (161)
116 1svi_A GTP-binding protein YSX 99.6 4.3E-16 1.5E-20 122.4 6.7 90 99-191 22-125 (195)
117 2cxx_A Probable GTP-binding pr 99.6 8.5E-17 2.9E-21 125.6 2.4 90 101-196 2-105 (190)
118 3a1s_A Iron(II) transport prot 99.6 2.3E-14 7.9E-19 119.4 13.1 104 98-209 3-115 (258)
119 3iev_A GTP-binding protein ERA 99.6 8E-15 2.7E-19 125.1 10.1 108 98-209 8-127 (308)
120 3iby_A Ferrous iron transport 99.6 8.4E-15 2.9E-19 122.0 9.7 93 101-195 2-107 (256)
121 3def_A T7I23.11 protein; chlor 99.6 7.4E-15 2.5E-19 122.2 8.4 102 99-203 35-148 (262)
122 3pqc_A Probable GTP-binding pr 99.5 9.7E-15 3.3E-19 114.1 7.7 96 98-196 21-131 (195)
123 3b1v_A Ferrous iron uptake tra 99.5 1.6E-14 5.5E-19 121.4 9.4 101 100-209 3-112 (272)
124 1wf3_A GTP-binding protein; GT 99.5 2.8E-14 9.4E-19 121.6 10.6 106 98-209 5-122 (301)
125 3i8s_A Ferrous iron transport 99.5 3.3E-14 1.1E-18 119.4 10.8 96 99-196 2-110 (274)
126 3k53_A Ferrous iron transport 99.5 8.7E-14 3E-18 116.2 12.0 103 99-208 2-113 (271)
127 3lxx_A GTPase IMAP family memb 99.5 7.6E-15 2.6E-19 120.1 4.9 87 98-186 27-127 (239)
128 3gee_A MNME, tRNA modification 99.5 3.1E-14 1E-18 128.5 9.0 106 100-209 233-348 (476)
129 1h65_A Chloroplast outer envel 99.5 3.1E-14 1.1E-18 118.9 8.1 109 99-208 38-158 (270)
130 3lxw_A GTPase IMAP family memb 99.5 8.3E-14 2.9E-18 115.1 9.4 82 100-183 21-117 (247)
131 2hjg_A GTP-binding protein ENG 99.5 2.5E-14 8.6E-19 127.4 5.8 105 99-209 174-291 (436)
132 4dhe_A Probable GTP-binding pr 99.5 2.3E-14 7.9E-19 115.0 4.6 106 99-208 28-148 (223)
133 1mky_A Probable GTP-binding pr 99.5 1.2E-13 4.2E-18 123.1 9.5 93 101-195 2-107 (439)
134 4fid_A G protein alpha subunit 99.5 8.8E-14 3E-18 120.4 8.3 64 146-209 159-233 (340)
135 2xtp_A GTPase IMAP family memb 99.5 4.9E-13 1.7E-17 110.5 11.9 84 98-183 20-117 (260)
136 2xtz_A Guanine nucleotide-bind 99.5 5.7E-14 1.9E-18 122.3 6.5 64 146-209 181-255 (354)
137 3ohm_A Guanine nucleotide-bind 99.4 5.5E-13 1.9E-17 114.9 10.5 76 130-209 153-239 (327)
138 2hjg_A GTP-binding protein ENG 99.4 7.3E-14 2.5E-18 124.4 4.7 106 100-209 3-116 (436)
139 1lnz_A SPO0B-associated GTP-bi 99.4 2.2E-13 7.5E-18 118.1 7.5 108 101-209 159-279 (342)
140 2e87_A Hypothetical protein PH 99.4 2.1E-12 7E-17 112.1 12.7 108 99-209 166-285 (357)
141 3qq5_A Small GTP-binding prote 99.4 2.6E-13 8.7E-18 120.8 6.7 104 98-208 32-144 (423)
142 1cip_A Protein (guanine nucleo 99.4 6.9E-13 2.4E-17 115.4 8.9 68 140-209 187-265 (353)
143 1xzp_A Probable tRNA modificat 99.4 3.9E-13 1.3E-17 121.4 7.0 90 100-191 243-343 (482)
144 4dcu_A GTP-binding protein ENG 99.4 9.3E-14 3.2E-18 124.4 2.6 108 98-209 21-136 (456)
145 2qtf_A Protein HFLX, GTP-bindi 99.4 1.3E-12 4.5E-17 114.1 9.8 106 100-208 178-296 (364)
146 4dcu_A GTP-binding protein ENG 99.4 6.4E-13 2.2E-17 118.9 7.7 106 98-209 193-311 (456)
147 3t5d_A Septin-7; GTP-binding p 99.4 1.6E-12 5.5E-17 108.7 9.2 106 99-208 7-148 (274)
148 3geh_A MNME, tRNA modification 99.4 5.9E-13 2E-17 119.7 6.9 97 99-198 223-329 (462)
149 2qag_A Septin-2, protein NEDD5 99.3 8.8E-13 3E-17 114.9 6.5 108 98-209 35-179 (361)
150 3sjy_A Translation initiation 99.3 5.5E-12 1.9E-16 111.2 10.6 104 98-201 6-128 (403)
151 3izy_P Translation initiation 99.3 3.2E-13 1.1E-17 123.3 1.8 105 100-209 4-109 (537)
152 1r5b_A Eukaryotic peptide chai 99.3 1.4E-12 4.9E-17 117.2 5.5 96 98-197 41-173 (467)
153 3j2k_7 ERF3, eukaryotic polype 99.3 7.9E-12 2.7E-16 111.5 9.2 86 98-185 15-132 (439)
154 1jal_A YCHF protein; nucleotid 99.3 1.1E-11 3.8E-16 108.1 9.0 97 100-198 2-133 (363)
155 3p26_A Elongation factor 1 alp 99.3 6.4E-12 2.2E-16 113.3 7.6 92 98-189 31-152 (483)
156 1jny_A EF-1-alpha, elongation 99.3 1.5E-12 5.3E-17 115.9 3.4 100 99-199 5-134 (435)
157 1g7s_A Translation initiation 99.3 6.1E-12 2.1E-16 116.2 7.3 94 99-192 4-117 (594)
158 1mky_A Probable GTP-binding pr 99.3 2.3E-11 8E-16 108.3 10.7 89 99-189 179-281 (439)
159 2c78_A Elongation factor TU-A; 99.3 8.3E-12 2.8E-16 110.1 7.5 102 98-200 9-126 (405)
160 1ega_A Protein (GTP-binding pr 99.2 1.7E-11 5.9E-16 104.1 8.1 104 98-209 6-121 (301)
161 3tr5_A RF-3, peptide chain rel 99.2 6.2E-12 2.1E-16 114.7 5.2 106 100-209 13-139 (528)
162 1n0u_A EF-2, elongation factor 99.2 5.5E-11 1.9E-15 113.9 11.3 99 99-197 18-147 (842)
163 3cb4_D GTP-binding protein LEP 99.2 1.3E-11 4.6E-16 114.0 6.7 106 100-209 4-128 (599)
164 1azs_C GS-alpha; complex (lyas 99.2 3.6E-11 1.2E-15 106.2 8.8 75 131-209 204-289 (402)
165 1pui_A ENGB, probable GTP-bind 99.2 1.2E-11 4.1E-16 98.1 5.2 93 100-195 26-134 (210)
166 2ohf_A Protein OLA1, GTP-bindi 99.2 1.6E-11 5.4E-16 108.2 6.5 91 100-190 22-135 (396)
167 1wxq_A GTP-binding protein; st 99.2 7.3E-11 2.5E-15 104.1 10.5 99 101-199 1-140 (397)
168 2aka_B Dynamin-1; fusion prote 99.2 2.1E-11 7.2E-16 102.2 6.6 108 98-208 24-196 (299)
169 1zun_B Sulfate adenylate trans 99.2 5.3E-11 1.8E-15 105.9 9.5 102 98-200 22-155 (434)
170 1zo1_I IF2, translation initia 99.2 1.5E-11 5E-16 111.5 5.1 90 99-190 3-96 (501)
171 2ywe_A GTP-binding protein LEP 99.2 4.3E-11 1.5E-15 110.6 8.2 105 100-208 6-129 (600)
172 3izq_1 HBS1P, elongation facto 99.2 1.2E-11 4E-16 114.7 4.3 87 98-184 165-281 (611)
173 2h5e_A Peptide chain release f 99.2 4.7E-11 1.6E-15 108.9 8.2 88 99-186 12-120 (529)
174 1f60_A Elongation factor EEF1A 99.2 1.1E-11 3.8E-16 111.2 3.8 87 98-184 5-121 (458)
175 1wb1_A Translation elongation 99.2 3.2E-11 1.1E-15 108.8 6.8 92 98-191 17-119 (482)
176 1d2e_A Elongation factor TU (E 99.2 4.2E-11 1.4E-15 105.4 7.3 99 100-199 3-116 (397)
177 1s0u_A EIF-2-gamma, translatio 99.1 1.4E-10 4.8E-15 102.3 10.1 95 99-193 7-130 (408)
178 1kk1_A EIF2gamma; initiation o 99.1 2.7E-10 9.3E-15 100.5 11.1 97 97-193 7-132 (410)
179 3t34_A Dynamin-related protein 99.1 1.1E-10 3.9E-15 101.1 7.9 106 101-208 35-207 (360)
180 1dar_A EF-G, elongation factor 99.1 1.8E-10 6E-15 108.2 9.2 94 98-195 10-124 (691)
181 2elf_A Protein translation elo 99.1 1E-10 3.6E-15 102.2 6.6 89 102-201 23-111 (370)
182 2xex_A Elongation factor G; GT 99.1 3.4E-10 1.2E-14 106.3 8.8 98 99-199 9-125 (693)
183 2qpt_A EH domain-containing pr 99.0 1.2E-10 4.1E-15 106.7 5.3 101 100-200 65-217 (550)
184 2qag_C Septin-7; cell cycle, c 99.0 5E-10 1.7E-14 99.4 9.0 108 97-208 28-171 (418)
185 1u0l_A Probable GTPase ENGC; p 99.0 6.5E-11 2.2E-15 100.5 2.8 86 115-209 32-120 (301)
186 2j69_A Bacterial dynamin-like 99.0 2.6E-10 8.9E-15 107.1 7.1 100 100-199 69-228 (695)
187 1zcb_A G alpha I/13; GTP-bindi 99.0 5.7E-10 1.9E-14 97.3 8.7 96 110-209 157-273 (362)
188 3avx_A Elongation factor TS, e 99.0 1.3E-10 4.6E-15 113.5 4.7 103 97-200 293-410 (1289)
189 2dy1_A Elongation factor G; tr 99.0 4E-10 1.4E-14 105.4 7.6 105 100-208 9-130 (665)
190 1jwy_B Dynamin A GTPase domain 99.0 3.3E-10 1.1E-14 95.7 6.3 28 98-125 22-49 (315)
191 2rdo_7 EF-G, elongation factor 99.0 9.6E-10 3.3E-14 103.4 9.4 96 99-194 9-128 (704)
192 2qnr_A Septin-2, protein NEDD5 99.0 3.3E-10 1.1E-14 96.3 5.0 76 98-173 16-115 (301)
193 2dby_A GTP-binding protein; GD 98.9 2.2E-09 7.6E-14 93.7 9.1 81 101-183 2-111 (368)
194 3mca_A HBS1, elongation factor 98.9 5.7E-10 2E-14 103.0 2.5 85 98-184 175-291 (592)
195 1udx_A The GTP-binding protein 98.8 6.6E-09 2.3E-13 92.1 8.4 99 101-201 158-264 (416)
196 2x2e_A Dynamin-1; nitration, h 98.8 2E-09 7E-14 93.0 4.5 29 98-126 29-57 (353)
197 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 6.5E-08 2.2E-12 85.1 7.8 84 100-183 20-127 (392)
198 4a9a_A Ribosome-interacting GT 98.6 1.4E-07 4.9E-12 82.5 9.1 84 100-185 72-163 (376)
199 3cnl_A YLQF, putative uncharac 98.3 3.5E-07 1.2E-11 76.1 3.5 57 101-160 100-156 (262)
200 2hf9_A Probable hydrogenase ni 98.3 2.1E-08 7.3E-13 80.2 -4.4 38 100-137 38-76 (226)
201 1bif_A 6-phosphofructo-2-kinas 98.2 4.7E-08 1.6E-12 87.6 -4.7 102 99-201 38-149 (469)
202 2wsm_A Hydrogenase expression/ 98.1 1.6E-06 5.3E-11 69.0 3.8 24 100-123 30-53 (221)
203 3vqt_A RF-3, peptide chain rel 98.1 6E-06 2.1E-10 75.5 7.3 100 100-200 31-151 (548)
204 1puj_A YLQF, conserved hypothe 98.1 3.4E-06 1.2E-10 70.8 4.9 59 99-160 119-177 (282)
205 3p32_A Probable GTPase RV1496/ 97.9 8.3E-06 2.9E-10 70.4 4.8 23 100-122 79-101 (355)
206 2www_A Methylmalonic aciduria 97.9 1.7E-06 5.7E-11 74.8 -0.2 38 148-188 167-204 (349)
207 3zvr_A Dynamin-1; hydrolase, D 97.8 6.2E-05 2.1E-09 71.2 9.3 29 97-125 48-76 (772)
208 1yrb_A ATP(GTP)binding protein 97.7 2.7E-05 9.3E-10 63.4 4.7 24 98-121 12-35 (262)
209 3j25_A Tetracycline resistance 97.6 1.8E-05 6.3E-10 73.5 2.8 99 101-200 3-118 (638)
210 4fn5_A EF-G 1, elongation fact 97.6 0.00022 7.5E-09 67.0 9.4 99 100-198 13-135 (709)
211 2p67_A LAO/AO transport system 97.6 1.4E-05 4.8E-10 68.6 1.0 37 147-186 148-184 (341)
212 2yv5_A YJEQ protein; hydrolase 97.5 0.00015 5.1E-09 61.2 6.9 43 157-199 65-108 (302)
213 3ec1_A YQEH GTPase; atnos1, at 97.5 0.00021 7.2E-09 62.0 6.8 57 100-159 162-223 (369)
214 3l82_B F-box only protein 4; T 97.5 4.4E-05 1.5E-09 61.7 2.3 55 154-209 108-167 (227)
215 2qm8_A GTPase/ATPase; G protei 97.3 0.00021 7E-09 61.3 4.4 22 100-121 55-76 (337)
216 3h2y_A GTPase family protein; 97.2 0.0005 1.7E-08 59.6 6.5 58 100-160 160-223 (368)
217 2qag_B Septin-6, protein NEDD5 97.2 0.0018 6.2E-08 57.3 9.5 60 100-159 42-106 (427)
218 1f5n_A Interferon-induced guan 97.1 0.00039 1.3E-08 64.0 5.3 62 98-160 36-103 (592)
219 3l2o_B F-box only protein 4; s 96.9 0.00034 1.1E-08 59.2 2.2 34 155-188 194-227 (312)
220 3sop_A Neuronal-specific septi 96.9 0.00059 2E-08 56.7 3.6 25 100-124 2-26 (270)
221 2j37_W Signal recognition part 96.8 0.0014 5E-08 59.2 5.5 87 100-186 101-228 (504)
222 1kgd_A CASK, peripheral plasma 96.1 0.003 1E-07 48.7 3.0 23 101-123 6-28 (180)
223 1ye8_A Protein THEP1, hypothet 96.1 0.0035 1.2E-07 48.6 3.2 22 102-123 2-23 (178)
224 1lvg_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 49.1 3.0 22 101-122 5-26 (198)
225 3q5d_A Atlastin-1; G protein, 95.9 0.008 2.7E-07 53.5 5.2 64 98-161 65-153 (447)
226 1tq4_A IIGP1, interferon-induc 95.9 0.0054 1.8E-07 54.1 4.0 23 102-124 71-93 (413)
227 1ex7_A Guanylate kinase; subst 95.8 0.0054 1.9E-07 48.1 3.2 21 103-123 4-24 (186)
228 3a00_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 47.2 2.9 20 103-122 4-23 (186)
229 3tr0_A Guanylate kinase, GMP k 95.7 0.0061 2.1E-07 47.2 3.0 22 102-123 9-30 (205)
230 1zp6_A Hypothetical protein AT 95.6 0.0066 2.2E-07 46.6 3.0 23 101-123 10-32 (191)
231 4gp7_A Metallophosphoesterase; 95.6 0.0061 2.1E-07 46.5 2.8 19 102-120 11-29 (171)
232 3ney_A 55 kDa erythrocyte memb 95.6 0.0079 2.7E-07 47.7 3.4 24 100-123 19-42 (197)
233 1s96_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 48.6 3.0 24 100-123 16-39 (219)
234 3tau_A Guanylate kinase, GMP k 95.5 0.0072 2.5E-07 47.6 3.0 23 101-123 9-31 (208)
235 1znw_A Guanylate kinase, GMP k 95.5 0.0079 2.7E-07 47.2 3.0 22 102-123 22-43 (207)
236 1z6g_A Guanylate kinase; struc 95.4 0.0081 2.8E-07 47.8 3.0 23 101-123 24-46 (218)
237 2qor_A Guanylate kinase; phosp 95.3 0.0094 3.2E-07 46.6 3.0 23 100-122 12-34 (204)
238 3kb2_A SPBC2 prophage-derived 95.2 0.011 3.6E-07 44.3 2.9 21 102-122 3-23 (173)
239 3lw7_A Adenylate kinase relate 95.2 0.012 4E-07 43.9 3.1 19 102-120 3-21 (179)
240 2cdn_A Adenylate kinase; phosp 95.2 0.015 5E-07 45.2 3.7 25 98-122 18-42 (201)
241 1htw_A HI0065; nucleotide-bind 95.2 0.011 3.9E-07 44.9 3.0 23 102-124 35-57 (158)
242 3c8u_A Fructokinase; YP_612366 95.1 0.011 3.7E-07 46.4 2.9 23 100-122 22-44 (208)
243 1ly1_A Polynucleotide kinase; 95.1 0.015 5E-07 43.9 3.5 22 101-122 3-24 (181)
244 2j41_A Guanylate kinase; GMP, 95.1 0.012 4E-07 45.6 3.0 24 101-124 7-30 (207)
245 1jbk_A CLPB protein; beta barr 95.1 0.013 4.4E-07 44.0 3.0 23 101-123 44-66 (195)
246 1kag_A SKI, shikimate kinase I 95.0 0.014 4.8E-07 43.9 3.0 22 101-122 5-26 (173)
247 2bdt_A BH3686; alpha-beta prot 95.0 0.014 4.7E-07 44.8 3.0 21 102-122 4-24 (189)
248 3ec2_A DNA replication protein 94.9 0.012 4.1E-07 44.9 2.5 23 101-123 39-61 (180)
249 1kht_A Adenylate kinase; phosp 94.9 0.017 5.9E-07 43.9 3.4 22 101-122 4-25 (192)
250 2i3b_A HCR-ntpase, human cance 94.9 0.015 5E-07 45.6 3.0 21 102-122 3-23 (189)
251 3fb4_A Adenylate kinase; psych 94.8 0.017 5.8E-07 45.2 3.2 21 102-122 2-22 (216)
252 4eun_A Thermoresistant glucoki 94.8 0.016 5.4E-07 45.1 3.0 23 100-122 29-51 (200)
253 2ehv_A Hypothetical protein PH 94.8 0.017 5.7E-07 45.9 3.2 20 102-121 32-51 (251)
254 2bbw_A Adenylate kinase 4, AK4 94.8 0.018 6.1E-07 46.3 3.4 21 101-121 28-48 (246)
255 3dl0_A Adenylate kinase; phosp 94.8 0.018 6.3E-07 45.1 3.4 21 102-122 2-22 (216)
256 3dm5_A SRP54, signal recogniti 94.8 0.025 8.6E-07 50.2 4.5 22 100-121 100-121 (443)
257 2jaq_A Deoxyguanosine kinase; 94.8 0.018 6.1E-07 44.3 3.2 21 102-122 2-22 (205)
258 3t61_A Gluconokinase; PSI-biol 94.8 0.017 5.7E-07 44.9 3.0 22 101-122 19-40 (202)
259 3tif_A Uncharacterized ABC tra 94.8 0.017 5.7E-07 46.7 3.0 22 102-123 33-54 (235)
260 2rcn_A Probable GTPase ENGC; Y 94.7 0.017 5.9E-07 49.9 3.3 25 101-125 216-240 (358)
261 1nks_A Adenylate kinase; therm 94.7 0.019 6.4E-07 43.7 3.1 21 102-122 3-23 (194)
262 3vaa_A Shikimate kinase, SK; s 94.7 0.019 6.5E-07 44.6 3.2 22 101-122 26-47 (199)
263 1qhx_A CPT, protein (chloramph 94.7 0.022 7.6E-07 43.0 3.4 22 101-122 4-25 (178)
264 4a74_A DNA repair and recombin 94.6 0.017 5.8E-07 45.3 2.8 23 101-123 26-48 (231)
265 1np6_A Molybdopterin-guanine d 94.6 0.019 6.6E-07 44.4 3.0 22 101-122 7-28 (174)
266 4ido_A Atlastin-1; GTPase, GTP 94.6 0.057 1.9E-06 48.1 6.3 62 100-161 67-153 (457)
267 1knq_A Gluconate kinase; ALFA/ 94.6 0.026 9E-07 42.6 3.6 22 101-122 9-30 (175)
268 1tev_A UMP-CMP kinase; ploop, 94.6 0.025 8.7E-07 43.0 3.5 23 100-122 3-25 (196)
269 3cm0_A Adenylate kinase; ATP-b 94.6 0.027 9.2E-07 42.8 3.7 23 100-122 4-26 (186)
270 2pcj_A ABC transporter, lipopr 94.5 0.019 6.6E-07 46.0 2.9 22 102-123 32-53 (224)
271 2if2_A Dephospho-COA kinase; a 94.5 0.021 7.3E-07 44.2 3.0 22 101-122 2-23 (204)
272 2onk_A Molybdate/tungstate ABC 94.5 0.023 7.9E-07 46.1 3.3 23 102-124 26-48 (240)
273 2eyu_A Twitching motility prot 94.5 0.02 7E-07 47.0 3.0 22 101-122 26-47 (261)
274 3asz_A Uridine kinase; cytidin 94.5 0.023 7.7E-07 44.3 3.1 23 100-122 6-28 (211)
275 2plr_A DTMP kinase, probable t 94.5 0.028 9.6E-07 43.4 3.6 23 100-122 4-26 (213)
276 3trf_A Shikimate kinase, SK; a 94.4 0.026 8.8E-07 43.0 3.2 22 101-122 6-27 (185)
277 1b0u_A Histidine permease; ABC 94.4 0.023 7.9E-07 46.7 3.1 22 102-123 34-55 (262)
278 2p65_A Hypothetical protein PF 94.4 0.018 6E-07 43.3 2.2 23 101-123 44-66 (187)
279 1sgw_A Putative ABC transporte 94.4 0.025 8.4E-07 45.2 3.1 22 102-123 37-58 (214)
280 3uie_A Adenylyl-sulfate kinase 94.3 0.024 8.2E-07 44.1 3.0 23 100-122 25-47 (200)
281 2rhm_A Putative kinase; P-loop 94.3 0.027 9.3E-07 42.9 3.3 23 100-122 5-27 (193)
282 3lnc_A Guanylate kinase, GMP k 94.3 0.015 5.2E-07 46.3 1.8 21 101-121 28-48 (231)
283 2cbz_A Multidrug resistance-as 94.3 0.026 8.9E-07 45.6 3.2 22 102-123 33-54 (237)
284 1mv5_A LMRA, multidrug resista 94.3 0.026 9.1E-07 45.7 3.3 22 102-123 30-51 (243)
285 1cke_A CK, MSSA, protein (cyti 94.3 0.027 9.1E-07 44.3 3.2 22 101-122 6-27 (227)
286 2ff7_A Alpha-hemolysin translo 94.3 0.026 8.9E-07 45.9 3.2 23 102-124 37-59 (247)
287 3gfo_A Cobalt import ATP-bindi 94.3 0.025 8.4E-07 47.0 3.1 22 102-123 36-57 (275)
288 1ukz_A Uridylate kinase; trans 94.3 0.039 1.3E-06 42.7 4.1 21 101-121 16-36 (203)
289 1u0l_A Probable GTPase ENGC; p 94.3 0.023 7.8E-07 47.5 2.9 26 101-126 170-195 (301)
290 2vp4_A Deoxynucleoside kinase; 94.3 0.026 9E-07 45.0 3.1 25 99-123 19-43 (230)
291 1g6h_A High-affinity branched- 94.3 0.025 8.6E-07 46.3 3.0 23 102-124 35-57 (257)
292 2yv5_A YJEQ protein; hydrolase 94.2 0.026 8.8E-07 47.3 3.1 23 101-124 166-188 (302)
293 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.029 9.8E-07 43.9 3.1 21 102-122 25-45 (235)
294 1e4v_A Adenylate kinase; trans 94.2 0.029 9.7E-07 44.1 3.1 21 102-122 2-22 (214)
295 2pze_A Cystic fibrosis transme 94.2 0.028 9.5E-07 45.2 3.1 22 102-123 36-57 (229)
296 4g1u_C Hemin import ATP-bindin 94.2 0.028 9.4E-07 46.4 3.1 23 102-124 39-61 (266)
297 3bos_A Putative DNA replicatio 94.1 0.028 9.5E-07 44.1 3.0 23 100-122 52-74 (242)
298 3tlx_A Adenylate kinase 2; str 94.1 0.034 1.1E-06 44.9 3.5 23 100-122 29-51 (243)
299 2olj_A Amino acid ABC transpor 94.1 0.028 9.6E-07 46.3 3.1 22 102-123 52-73 (263)
300 1ji0_A ABC transporter; ATP bi 94.1 0.028 9.6E-07 45.5 3.0 23 102-124 34-56 (240)
301 2qi9_C Vitamin B12 import ATP- 94.1 0.029 9.8E-07 45.8 3.1 22 102-123 28-49 (249)
302 2zu0_C Probable ATP-dependent 94.1 0.03 1E-06 46.1 3.3 22 102-123 48-69 (267)
303 2v54_A DTMP kinase, thymidylat 94.1 0.032 1.1E-06 43.0 3.3 24 100-123 4-27 (204)
304 2d2e_A SUFC protein; ABC-ATPas 94.1 0.03 1E-06 45.6 3.2 22 102-123 31-52 (250)
305 1aky_A Adenylate kinase; ATP:A 94.1 0.034 1.2E-06 43.7 3.4 23 100-122 4-26 (220)
306 1lw7_A Transcriptional regulat 94.1 0.024 8.3E-07 48.5 2.7 24 100-123 170-193 (365)
307 3sr0_A Adenylate kinase; phosp 94.1 0.034 1.1E-06 44.1 3.4 21 102-122 2-22 (206)
308 2v9p_A Replication protein E1; 94.1 0.029 9.9E-07 47.4 3.1 22 101-122 127-148 (305)
309 2ixe_A Antigen peptide transpo 94.0 0.029 1E-06 46.3 3.0 23 102-124 47-69 (271)
310 1vpl_A ABC transporter, ATP-bi 94.0 0.03 1E-06 45.9 3.1 22 102-123 43-64 (256)
311 1ixz_A ATP-dependent metallopr 94.0 0.03 1E-06 45.0 3.0 21 103-123 52-72 (254)
312 1zcb_A G alpha I/13; GTP-bindi 94.0 0.033 1.1E-06 48.1 3.4 24 98-121 31-54 (362)
313 1njg_A DNA polymerase III subu 94.0 0.03 1E-06 43.4 3.0 21 102-122 47-67 (250)
314 2ghi_A Transport protein; mult 94.0 0.032 1.1E-06 45.7 3.2 22 102-123 48-69 (260)
315 1jjv_A Dephospho-COA kinase; P 94.0 0.038 1.3E-06 42.9 3.5 22 101-122 3-24 (206)
316 2chg_A Replication factor C sm 94.0 0.031 1.1E-06 42.9 3.0 20 103-122 41-60 (226)
317 2ihy_A ABC transporter, ATP-bi 94.0 0.034 1.1E-06 46.2 3.3 23 102-124 49-71 (279)
318 1t9h_A YLOQ, probable GTPase E 94.0 0.01 3.6E-07 50.1 0.2 24 101-124 174-197 (307)
319 1zd8_A GTP:AMP phosphotransfer 93.9 0.034 1.2E-06 44.0 3.2 22 101-122 8-29 (227)
320 1via_A Shikimate kinase; struc 93.9 0.034 1.2E-06 42.1 3.0 21 102-122 6-26 (175)
321 3b85_A Phosphate starvation-in 93.9 0.024 8.3E-07 45.0 2.2 22 102-123 24-45 (208)
322 2f1r_A Molybdopterin-guanine d 93.9 0.017 5.7E-07 44.6 1.2 21 102-122 4-24 (171)
323 2nq2_C Hypothetical ABC transp 93.9 0.033 1.1E-06 45.5 3.0 23 102-124 33-55 (253)
324 3iij_A Coilin-interacting nucl 93.9 0.046 1.6E-06 41.5 3.7 22 100-121 11-32 (180)
325 1y63_A LMAJ004144AAA protein; 93.9 0.043 1.5E-06 42.1 3.5 24 100-123 10-33 (184)
326 2yz2_A Putative ABC transporte 93.8 0.034 1.2E-06 45.7 3.0 22 102-123 35-56 (266)
327 2cvh_A DNA repair and recombin 93.8 0.038 1.3E-06 43.0 3.1 21 102-122 22-42 (220)
328 2yvu_A Probable adenylyl-sulfa 93.8 0.051 1.8E-06 41.5 3.9 23 100-122 13-35 (186)
329 2pt5_A Shikimate kinase, SK; a 93.8 0.042 1.4E-06 41.0 3.3 21 102-122 2-22 (168)
330 2z0h_A DTMP kinase, thymidylat 93.8 0.037 1.3E-06 42.3 3.0 21 102-122 2-22 (197)
331 2pjz_A Hypothetical protein ST 93.7 0.04 1.4E-06 45.4 3.3 23 102-124 32-54 (263)
332 2wwf_A Thymidilate kinase, put 93.7 0.052 1.8E-06 42.1 3.8 23 100-122 10-32 (212)
333 1gtv_A TMK, thymidylate kinase 93.7 0.015 5.1E-07 45.3 0.6 21 102-122 2-22 (214)
334 1zak_A Adenylate kinase; ATP:A 93.7 0.037 1.3E-06 43.6 2.9 22 101-122 6-27 (222)
335 2xb4_A Adenylate kinase; ATP-b 93.7 0.044 1.5E-06 43.4 3.4 21 102-122 2-22 (223)
336 1rj9_A FTSY, signal recognitio 93.7 0.036 1.2E-06 46.6 3.0 21 101-121 103-123 (304)
337 1n0w_A DNA repair protein RAD5 93.7 0.041 1.4E-06 43.4 3.2 22 102-123 26-47 (243)
338 2kjq_A DNAA-related protein; s 93.7 0.025 8.7E-07 42.3 1.8 23 101-123 37-59 (149)
339 3aez_A Pantothenate kinase; tr 93.6 0.038 1.3E-06 46.6 3.0 23 100-122 90-112 (312)
340 2qt1_A Nicotinamide riboside k 93.6 0.046 1.6E-06 42.5 3.3 24 100-123 21-44 (207)
341 2w58_A DNAI, primosome compone 93.6 0.041 1.4E-06 42.5 3.0 22 101-122 55-76 (202)
342 1gvn_B Zeta; postsegregational 93.6 0.047 1.6E-06 45.3 3.5 22 101-122 34-55 (287)
343 1qf9_A UMP/CMP kinase, protein 93.6 0.054 1.9E-06 41.0 3.6 22 101-122 7-28 (194)
344 1ak2_A Adenylate kinase isoenz 93.6 0.047 1.6E-06 43.5 3.4 22 101-122 17-38 (233)
345 1nn5_A Similar to deoxythymidy 93.6 0.045 1.5E-06 42.5 3.2 23 100-122 9-31 (215)
346 2pbr_A DTMP kinase, thymidylat 93.5 0.046 1.6E-06 41.5 3.2 21 102-122 2-22 (195)
347 1uj2_A Uridine-cytidine kinase 93.5 0.047 1.6E-06 44.1 3.4 23 100-122 22-44 (252)
348 2x8a_A Nuclear valosin-contain 93.5 0.04 1.4E-06 45.4 3.0 20 103-122 47-66 (274)
349 1xjc_A MOBB protein homolog; s 93.5 0.048 1.7E-06 42.0 3.2 21 102-122 6-26 (169)
350 2c95_A Adenylate kinase 1; tra 93.5 0.044 1.5E-06 41.8 3.0 22 101-122 10-31 (196)
351 3b9q_A Chloroplast SRP recepto 93.5 0.042 1.4E-06 46.2 3.0 23 100-122 100-122 (302)
352 3jvv_A Twitching mobility prot 93.4 0.041 1.4E-06 47.4 3.0 21 102-122 125-145 (356)
353 1iy2_A ATP-dependent metallopr 93.4 0.044 1.5E-06 44.8 3.0 21 103-123 76-96 (278)
354 1cr0_A DNA primase/helicase; R 93.4 0.04 1.4E-06 45.4 2.8 21 102-122 37-57 (296)
355 2ze6_A Isopentenyl transferase 93.4 0.046 1.6E-06 44.5 3.0 21 102-122 3-23 (253)
356 2bwj_A Adenylate kinase 5; pho 93.4 0.051 1.7E-06 41.6 3.2 23 100-122 12-34 (199)
357 1e6c_A Shikimate kinase; phosp 93.4 0.051 1.7E-06 40.7 3.1 21 102-122 4-24 (173)
358 3be4_A Adenylate kinase; malar 93.3 0.05 1.7E-06 42.8 3.2 22 101-122 6-27 (217)
359 1lv7_A FTSH; alpha/beta domain 93.3 0.046 1.6E-06 44.0 3.0 21 102-122 47-67 (257)
360 3e70_C DPA, signal recognition 93.3 0.045 1.5E-06 46.6 3.0 23 100-122 129-151 (328)
361 3fvq_A Fe(3+) IONS import ATP- 93.3 0.045 1.5E-06 47.3 3.0 24 102-125 32-55 (359)
362 2bbs_A Cystic fibrosis transme 93.2 0.047 1.6E-06 45.6 3.0 22 102-123 66-87 (290)
363 1in4_A RUVB, holliday junction 93.2 0.047 1.6E-06 46.1 3.0 22 102-123 53-74 (334)
364 2jeo_A Uridine-cytidine kinase 93.2 0.049 1.7E-06 43.8 3.0 23 100-122 25-47 (245)
365 3nh6_A ATP-binding cassette SU 93.2 0.035 1.2E-06 46.8 2.1 23 101-123 81-103 (306)
366 1z47_A CYSA, putative ABC-tran 93.2 0.052 1.8E-06 46.8 3.2 23 102-124 43-65 (355)
367 3co5_A Putative two-component 93.2 0.068 2.3E-06 39.3 3.5 23 101-123 28-50 (143)
368 1uf9_A TT1252 protein; P-loop, 93.1 0.059 2E-06 41.3 3.2 24 100-123 8-31 (203)
369 3kta_A Chromosome segregation 93.1 0.055 1.9E-06 41.0 3.0 21 102-122 28-48 (182)
370 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.056 1.9E-06 44.0 3.2 22 101-122 5-26 (260)
371 1rz3_A Hypothetical protein rb 93.1 0.05 1.7E-06 42.3 2.8 23 100-122 22-44 (201)
372 2it1_A 362AA long hypothetical 93.1 0.055 1.9E-06 46.7 3.3 23 102-124 31-53 (362)
373 2vli_A Antibiotic resistance p 93.1 0.038 1.3E-06 41.8 2.0 23 100-122 5-27 (183)
374 2ewv_A Twitching motility prot 93.1 0.049 1.7E-06 47.0 2.9 22 101-122 137-158 (372)
375 2iyv_A Shikimate kinase, SK; t 93.1 0.055 1.9E-06 41.1 3.0 22 101-122 3-24 (184)
376 2yyz_A Sugar ABC transporter, 93.1 0.055 1.9E-06 46.7 3.2 23 102-124 31-53 (359)
377 2gza_A Type IV secretion syste 93.0 0.05 1.7E-06 46.7 2.9 23 101-123 176-198 (361)
378 2dr3_A UPF0273 protein PH0284; 93.0 0.056 1.9E-06 42.7 3.0 21 102-122 25-45 (247)
379 3rlf_A Maltose/maltodextrin im 93.0 0.059 2E-06 46.9 3.3 23 102-124 31-53 (381)
380 1odf_A YGR205W, hypothetical 3 93.0 0.07 2.4E-06 44.5 3.6 22 100-121 31-52 (290)
381 1g29_1 MALK, maltose transport 93.0 0.058 2E-06 46.7 3.2 23 102-124 31-53 (372)
382 2p5t_B PEZT; postsegregational 93.0 0.058 2E-06 43.7 3.0 23 100-122 32-54 (253)
383 2pez_A Bifunctional 3'-phospho 92.9 0.062 2.1E-06 40.7 3.0 23 100-122 5-27 (179)
384 3n70_A Transport activator; si 92.9 0.1 3.6E-06 38.3 4.2 23 101-123 25-47 (145)
385 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.06 2E-06 43.1 3.0 22 101-122 40-61 (262)
386 1v43_A Sugar-binding transport 92.9 0.061 2.1E-06 46.6 3.3 23 102-124 39-61 (372)
387 3zvl_A Bifunctional polynucleo 92.9 0.21 7.1E-06 43.6 6.7 24 100-123 258-281 (416)
388 2qen_A Walker-type ATPase; unk 92.9 0.058 2E-06 44.7 3.0 22 102-123 33-54 (350)
389 3h4m_A Proteasome-activating n 92.8 0.058 2E-06 43.9 2.9 23 101-123 52-74 (285)
390 3umf_A Adenylate kinase; rossm 92.8 0.061 2.1E-06 43.1 3.0 23 100-122 28-51 (217)
391 3tui_C Methionine import ATP-b 92.7 0.067 2.3E-06 46.3 3.3 23 102-124 56-78 (366)
392 2qby_A CDC6 homolog 1, cell di 92.7 0.058 2E-06 45.3 2.8 22 101-122 46-67 (386)
393 2fna_A Conserved hypothetical 92.7 0.058 2E-06 44.8 2.8 22 102-123 32-53 (357)
394 1m7g_A Adenylylsulfate kinase; 92.6 0.068 2.3E-06 41.8 3.0 22 101-122 26-47 (211)
395 4eaq_A DTMP kinase, thymidylat 92.6 0.068 2.3E-06 42.8 3.0 23 100-122 26-48 (229)
396 3b9p_A CG5977-PA, isoform A; A 92.6 0.064 2.2E-06 44.0 2.9 22 101-122 55-76 (297)
397 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.055 1.9E-06 45.9 2.5 23 101-123 172-194 (330)
398 2og2_A Putative signal recogni 92.6 0.065 2.2E-06 46.2 3.0 23 100-122 157-179 (359)
399 1vht_A Dephospho-COA kinase; s 92.6 0.082 2.8E-06 41.4 3.4 23 100-122 4-26 (218)
400 4e22_A Cytidylate kinase; P-lo 92.6 0.08 2.7E-06 42.9 3.4 22 100-121 27-48 (252)
401 1p9r_A General secretion pathw 92.5 0.065 2.2E-06 47.2 3.0 22 102-123 169-190 (418)
402 1sq5_A Pantothenate kinase; P- 92.5 0.063 2.2E-06 44.9 2.8 23 100-122 80-102 (308)
403 3d31_A Sulfate/molybdate ABC t 92.5 0.051 1.7E-06 46.7 2.2 23 102-124 28-50 (348)
404 1ofh_A ATP-dependent HSL prote 92.5 0.073 2.5E-06 43.5 3.0 22 101-122 51-72 (310)
405 3syl_A Protein CBBX; photosynt 92.4 0.096 3.3E-06 43.0 3.8 21 101-121 68-88 (309)
406 3szr_A Interferon-induced GTP- 92.4 0.056 1.9E-06 49.7 2.5 25 102-126 47-71 (608)
407 1l8q_A Chromosomal replication 92.4 0.07 2.4E-06 44.5 2.9 22 101-122 38-59 (324)
408 1nij_A Hypothetical protein YJ 92.4 0.054 1.8E-06 45.6 2.2 22 102-123 6-27 (318)
409 2yhs_A FTSY, cell division pro 92.3 0.072 2.4E-06 48.0 3.0 23 100-122 293-315 (503)
410 1nlf_A Regulatory protein REPA 92.3 0.074 2.5E-06 43.5 2.9 22 101-122 31-52 (279)
411 3gd7_A Fusion complex of cysti 92.3 0.072 2.5E-06 46.4 3.0 22 102-123 49-70 (390)
412 3tqc_A Pantothenate kinase; bi 92.3 0.078 2.7E-06 45.0 3.0 22 100-121 92-113 (321)
413 1fnn_A CDC6P, cell division co 92.3 0.077 2.6E-06 44.8 3.0 22 102-123 46-67 (389)
414 2obl_A ESCN; ATPase, hydrolase 92.3 0.076 2.6E-06 45.5 3.0 24 101-124 72-95 (347)
415 2oap_1 GSPE-2, type II secreti 92.1 0.078 2.7E-06 47.8 3.0 23 101-123 261-283 (511)
416 1azs_C GS-alpha; complex (lyas 92.1 0.096 3.3E-06 45.9 3.5 25 97-121 37-61 (402)
417 3t15_A Ribulose bisphosphate c 92.1 0.079 2.7E-06 43.9 2.8 22 101-122 37-58 (293)
418 1ltq_A Polynucleotide kinase; 92.0 0.11 3.6E-06 42.8 3.5 22 101-122 3-24 (301)
419 1d2n_A N-ethylmaleimide-sensit 92.0 0.088 3E-06 42.7 3.0 23 100-122 64-86 (272)
420 1zuh_A Shikimate kinase; alpha 91.9 0.1 3.5E-06 39.0 3.1 22 101-122 8-29 (168)
421 3nwj_A ATSK2; P loop, shikimat 91.9 0.091 3.1E-06 42.9 2.9 23 100-122 48-70 (250)
422 1oxx_K GLCV, glucose, ABC tran 91.8 0.052 1.8E-06 46.7 1.4 23 102-124 33-55 (353)
423 2v1u_A Cell division control p 91.8 0.081 2.8E-06 44.5 2.6 23 101-123 45-67 (387)
424 3cf0_A Transitional endoplasmi 91.7 0.095 3.2E-06 43.5 2.9 23 101-123 50-72 (301)
425 1f2t_A RAD50 ABC-ATPase; DNA d 91.7 0.12 4E-06 38.6 3.2 19 103-121 26-44 (149)
426 2zts_A Putative uncharacterize 91.7 0.11 3.8E-06 40.9 3.2 20 102-121 32-51 (251)
427 2qmh_A HPR kinase/phosphorylas 91.7 0.11 3.7E-06 41.4 3.0 24 100-123 34-57 (205)
428 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.087 3E-06 46.9 2.7 23 101-123 139-161 (460)
429 4fcw_A Chaperone protein CLPB; 91.6 0.1 3.5E-06 42.9 3.0 22 101-122 48-69 (311)
430 1sxj_E Activator 1 40 kDa subu 91.6 0.084 2.9E-06 44.3 2.5 20 103-122 39-58 (354)
431 2px0_A Flagellar biosynthesis 91.5 0.097 3.3E-06 43.7 2.8 21 101-121 106-126 (296)
432 3r20_A Cytidylate kinase; stru 91.4 0.13 4.3E-06 41.7 3.3 22 100-121 9-30 (233)
433 2dpy_A FLII, flagellum-specifi 91.4 0.1 3.5E-06 46.1 3.0 24 101-124 158-181 (438)
434 1sxj_D Activator 1 41 kDa subu 91.4 0.11 3.7E-06 43.4 3.0 21 103-123 61-81 (353)
435 1sxj_C Activator 1 40 kDa subu 91.4 0.11 3.6E-06 43.8 2.9 21 103-123 49-69 (340)
436 3uk6_A RUVB-like 2; hexameric 91.3 0.1 3.5E-06 44.0 2.8 22 101-122 71-92 (368)
437 1p5z_B DCK, deoxycytidine kina 91.3 0.079 2.7E-06 42.9 2.0 23 100-122 24-46 (263)
438 1q3t_A Cytidylate kinase; nucl 91.3 0.14 4.6E-06 40.8 3.3 25 98-122 14-38 (236)
439 2qby_B CDC6 homolog 3, cell di 91.2 0.11 3.8E-06 43.9 2.8 21 102-122 47-67 (384)
440 2f6r_A COA synthase, bifunctio 91.1 0.13 4.5E-06 42.4 3.2 22 100-121 75-96 (281)
441 1tue_A Replication protein E1; 91.0 0.097 3.3E-06 41.9 2.2 21 102-122 60-80 (212)
442 3pfi_A Holliday junction ATP-d 91.0 0.13 4.3E-06 43.0 3.0 21 102-122 57-77 (338)
443 2bjv_A PSP operon transcriptio 90.9 0.22 7.6E-06 40.1 4.3 23 101-123 30-52 (265)
444 3a8t_A Adenylate isopentenyltr 90.9 0.15 5.1E-06 43.7 3.3 21 102-122 42-62 (339)
445 3pxg_A Negative regulator of g 90.9 0.12 4.1E-06 45.8 2.9 22 101-122 202-223 (468)
446 1xwi_A SKD1 protein; VPS4B, AA 90.9 0.13 4.4E-06 43.3 2.9 23 101-123 46-68 (322)
447 1vma_A Cell division protein F 90.8 0.14 4.6E-06 43.1 3.0 22 100-121 104-125 (306)
448 3eie_A Vacuolar protein sortin 90.8 0.13 4.5E-06 43.0 2.9 23 100-122 51-73 (322)
449 3b60_A Lipid A export ATP-bind 90.8 0.13 4.4E-06 46.9 3.1 23 101-123 370-392 (582)
450 2r8r_A Sensor protein; KDPD, P 90.8 0.17 5.7E-06 41.0 3.4 22 100-121 6-27 (228)
451 2r62_A Cell division protease 90.7 0.065 2.2E-06 43.3 0.9 21 102-122 46-66 (268)
452 1pzn_A RAD51, DNA repair and r 90.7 0.14 4.6E-06 43.8 2.9 23 101-123 132-154 (349)
453 1svm_A Large T antigen; AAA+ f 90.7 0.14 4.7E-06 44.4 3.0 22 101-122 170-191 (377)
454 3exa_A TRNA delta(2)-isopenten 90.6 0.15 5.2E-06 43.3 3.1 22 102-123 5-26 (322)
455 3b5x_A Lipid A export ATP-bind 90.6 0.15 5E-06 46.5 3.2 23 101-123 370-392 (582)
456 4dzz_A Plasmid partitioning pr 90.5 0.094 3.2E-06 40.3 1.7 50 147-200 75-124 (206)
457 1c9k_A COBU, adenosylcobinamid 90.5 0.17 5.9E-06 39.3 3.1 21 103-123 2-22 (180)
458 1z6t_A APAF-1, apoptotic prote 90.5 0.16 5.6E-06 45.7 3.4 22 102-123 149-170 (591)
459 1um8_A ATP-dependent CLP prote 90.4 0.15 5.2E-06 43.4 3.0 22 101-122 73-94 (376)
460 1yqt_A RNAse L inhibitor; ATP- 90.4 0.17 5.8E-06 45.8 3.4 24 101-124 48-71 (538)
461 3qf7_A RAD50; ABC-ATPase, ATPa 90.4 0.16 5.6E-06 43.5 3.2 19 103-121 26-44 (365)
462 3crm_A TRNA delta(2)-isopenten 90.3 0.16 5.5E-06 43.1 3.0 22 101-122 6-27 (323)
463 2qgz_A Helicase loader, putati 90.3 0.16 5.5E-06 42.5 3.0 23 100-122 152-174 (308)
464 3euj_A Chromosome partition pr 90.2 0.16 5.5E-06 45.5 3.0 21 102-122 31-51 (483)
465 3d3q_A TRNA delta(2)-isopenten 90.1 0.18 6.1E-06 43.2 3.1 22 101-122 8-29 (340)
466 3ake_A Cytidylate kinase; CMP 90.1 0.18 6.3E-06 38.6 3.0 21 102-122 4-24 (208)
467 2r44_A Uncharacterized protein 90.1 0.12 4E-06 43.1 2.0 21 102-122 48-68 (331)
468 1iqp_A RFCS; clamp loader, ext 90.0 0.18 6.1E-06 41.4 3.0 22 102-123 48-69 (327)
469 1hqc_A RUVB; extended AAA-ATPa 90.0 0.12 4E-06 42.8 1.9 22 101-122 39-60 (324)
470 2ocp_A DGK, deoxyguanosine kin 90.0 0.19 6.6E-06 40.0 3.1 22 101-122 3-24 (241)
471 3lda_A DNA repair protein RAD5 90.0 0.17 5.7E-06 44.2 2.9 20 102-121 180-199 (400)
472 3foz_A TRNA delta(2)-isopenten 89.9 0.19 6.6E-06 42.6 3.2 22 101-122 11-32 (316)
473 3d8b_A Fidgetin-like protein 1 89.9 0.18 6E-06 43.0 3.0 23 100-122 117-139 (357)
474 1jr3_A DNA polymerase III subu 89.8 0.18 6.3E-06 42.3 3.0 21 102-122 40-60 (373)
475 2qp9_X Vacuolar protein sortin 89.8 0.18 6.1E-06 43.0 3.0 23 101-123 85-107 (355)
476 2yl4_A ATP-binding cassette SU 89.7 0.14 4.7E-06 46.8 2.3 22 102-123 372-393 (595)
477 3hws_A ATP-dependent CLP prote 89.7 0.19 6.5E-06 42.6 3.0 22 101-122 52-73 (363)
478 2h92_A Cytidylate kinase; ross 89.6 0.22 7.4E-06 38.8 3.1 23 100-122 3-25 (219)
479 1tf7_A KAIC; homohexamer, hexa 89.5 0.18 6.2E-06 45.3 2.9 19 103-121 42-60 (525)
480 2z4s_A Chromosomal replication 89.5 0.19 6.4E-06 44.3 2.9 22 101-122 131-152 (440)
481 3tqf_A HPR(Ser) kinase; transf 89.5 0.23 7.9E-06 38.7 3.1 24 100-123 16-39 (181)
482 1w5s_A Origin recognition comp 89.5 0.15 5.3E-06 43.3 2.3 22 102-123 52-75 (412)
483 3qf4_B Uncharacterized ABC tra 89.4 0.16 5.4E-06 46.5 2.4 23 101-123 382-404 (598)
484 1sxj_B Activator 1 37 kDa subu 89.4 0.21 7.1E-06 40.9 3.0 21 103-123 45-65 (323)
485 3qks_A DNA double-strand break 89.4 0.24 8.2E-06 38.7 3.2 20 102-121 25-44 (203)
486 4edh_A DTMP kinase, thymidylat 89.4 0.22 7.5E-06 39.5 3.0 22 100-121 6-27 (213)
487 2chq_A Replication factor C sm 89.3 0.21 7.2E-06 40.8 2.9 20 103-122 41-60 (319)
488 3pvs_A Replication-associated 89.3 0.2 7E-06 44.2 3.0 21 102-122 52-72 (447)
489 3ozx_A RNAse L inhibitor; ATP 89.2 0.21 7.2E-06 45.3 3.1 23 102-124 27-49 (538)
490 3m6a_A ATP-dependent protease 89.2 0.2 6.8E-06 45.4 2.9 22 101-122 109-130 (543)
491 1g8p_A Magnesium-chelatase 38 89.2 0.12 4E-06 43.1 1.3 21 102-122 47-67 (350)
492 3vfd_A Spastin; ATPase, microt 89.2 0.21 7.2E-06 42.9 3.0 23 101-123 149-171 (389)
493 3j16_B RLI1P; ribosome recycli 89.2 0.22 7.6E-06 45.8 3.3 24 101-124 104-127 (608)
494 4b4t_K 26S protease regulatory 89.2 0.21 7.3E-06 44.0 3.0 21 102-122 208-228 (428)
495 2grj_A Dephospho-COA kinase; T 89.1 0.28 9.5E-06 38.2 3.3 25 99-123 11-35 (192)
496 3bh0_A DNAB-like replicative h 89.0 0.25 8.5E-06 41.4 3.2 21 102-122 70-90 (315)
497 2orw_A Thymidine kinase; TMTK, 89.0 0.24 8.3E-06 38.1 2.9 20 102-121 5-24 (184)
498 4a82_A Cystic fibrosis transme 88.9 0.14 4.8E-06 46.6 1.7 23 101-123 368-390 (578)
499 3v9p_A DTMP kinase, thymidylat 88.8 0.18 6.2E-06 40.5 2.1 23 100-122 25-47 (227)
500 3ozx_A RNAse L inhibitor; ATP 88.8 0.24 8.1E-06 44.9 3.1 23 102-124 296-318 (538)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=2.7e-29 Score=205.18 Aligned_cols=115 Identities=21% Similarity=0.473 Sum_probs=97.7
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCc
Q 028396 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad 173 (209)
..+.+.+||++||++|||||||++||+++.|. .+.+|+|.++..+.+.+++..++++||||+|+|+|..+++.|+++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 34567899999999999999999999999999 78889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 174 ~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
++++|||+++++||+++.+|++++++..++++|++|
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piil 123 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 999999999999999999999999988778899875
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.91 E-value=3.9e-24 Score=171.07 Aligned_cols=112 Identities=28% Similarity=0.511 Sum_probs=96.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999998 67788899998889999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|++++.+....++|++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 139 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999988767788765
No 3
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=1.5e-23 Score=165.67 Aligned_cols=112 Identities=21% Similarity=0.446 Sum_probs=100.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++++. .+.++++.++..+.+.+++..+.+++||++|++++..++..+++++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999998 67778898988889999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|+.++.+....++|++|
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piil 131 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999988767788765
No 4
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.90 E-value=5.3e-23 Score=162.10 Aligned_cols=111 Identities=23% Similarity=0.504 Sum_probs=103.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+..++..+.+++||++|++++..++..+++++|++|+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 4799999999999999999999999998 777888989888888889999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|||++++++|+.+..|+.++.+....++|++|
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 132 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999999999999999988766788765
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.9e-23 Score=167.77 Aligned_cols=112 Identities=21% Similarity=0.448 Sum_probs=104.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34799999999999999999999999998 77889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||+++++||+++..|++++......++|++|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 136 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVL 136 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999988767788764
No 6
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.90 E-value=2.8e-23 Score=167.97 Aligned_cols=114 Identities=23% Similarity=0.365 Sum_probs=97.3
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccC
Q 028396 94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (209)
Q Consensus 94 ~~~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~a 172 (209)
.......+||+++|+++||||||+++|.++.|. .+.+|++.++ .+.+.+++..+.++|||++|+++|..++..+++++
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 334456899999999999999999999999998 6777888776 46778888899999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHH-HHHHHHHHHhHCCCCceEEc
Q 028396 173 VAILFMFDLTSRCTLNS-IVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 173 d~illvyDit~~~Sf~~-l~~wl~~i~~~~~~~vPiil 209 (209)
|++|+|||+++++||++ +..|++++.+.. +++|++|
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piil 136 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLL 136 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 99999999999999999 689999999886 5778765
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.90 E-value=1.9e-23 Score=163.31 Aligned_cols=111 Identities=22% Similarity=0.486 Sum_probs=80.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 4799999999999999999999999988 778889999988889999999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|||+++++||+++..|++++......++|++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMI 118 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999999999999999988767788765
No 8
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=6.1e-23 Score=157.43 Aligned_cols=111 Identities=24% Similarity=0.472 Sum_probs=103.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4789999999999999999999999988 677889999888889999999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|||++++++|+++..|+.++.+....++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 113 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIAL 113 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 99999999999999999999988767788764
No 9
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=7.3e-23 Score=157.02 Aligned_cols=113 Identities=22% Similarity=0.491 Sum_probs=104.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
+...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++||++|++++...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 345799999999999999999999999988 6677889898888899999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
++|||++++++|+++..|+.++.+...+++|++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 116 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999999999999999999999988767888774
No 10
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=162.81 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=93.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|+++.|. .+.+|++.++ ...+.+++..+.+++||++|+++|..+ ..+++++|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 44799999999999999999999999988 6777888766 456788899999999999999999875 67999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHC---CCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWN---QGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~---~~~vPiil 209 (209)
+|||+++++||+++..|++++.+.. ..++|++|
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 132 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL 132 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 9999999999999999999998764 24677664
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.90 E-value=4.4e-23 Score=158.73 Aligned_cols=112 Identities=29% Similarity=0.539 Sum_probs=96.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999988 77788999988888999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|++++.+....++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 116 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 116 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 999999999999999999999887656677764
No 12
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.90 E-value=8.9e-23 Score=161.12 Aligned_cols=113 Identities=25% Similarity=0.426 Sum_probs=103.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++||++|++++..++..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 345799999999999999999999999998 6777889999888999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|+|||++++.+|+.+..|+.++......++|++|
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piil 135 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 9999999999999999999999887666788764
No 13
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.90 E-value=5e-23 Score=159.44 Aligned_cols=115 Identities=19% Similarity=0.481 Sum_probs=103.8
Q ss_pred CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCc
Q 028396 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad 173 (209)
..+...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++...+..+++++|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 33456799999999999999999999999988 77788899999899999999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 174 ~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
++++|||++++.+|+++..|+.++......++|++|
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 124 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999999999999999999999999887666788764
No 14
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=1.1e-22 Score=158.15 Aligned_cols=113 Identities=27% Similarity=0.502 Sum_probs=104.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++...+..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 455799999999999999999999999998 6677889999888999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|+|||++++.+|+++..|+.++.....+++|++|
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~ 122 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999999999999999999999988767788764
No 15
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.4e-22 Score=157.57 Aligned_cols=113 Identities=26% Similarity=0.537 Sum_probs=96.0
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ 174 (209)
....+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++..++..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 355899999999999999999999999985 567788999888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 175 illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+++|||++++.+|+++..|+.++......++|++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 121 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 99999999999999999999999988767788775
No 16
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=1.9e-22 Score=160.94 Aligned_cols=112 Identities=19% Similarity=0.460 Sum_probs=104.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 34799999999999999999999999998 77889999999889999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++.+|+.+..|++++......++|++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999988767788764
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.89 E-value=8.7e-23 Score=158.06 Aligned_cols=112 Identities=22% Similarity=0.464 Sum_probs=103.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++||++|++++...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 34799999999999999999999999988 67778899998888999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++.+|+++..|+.++......++|++|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 125 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999999999999999999999988767788765
No 18
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.89 E-value=8.4e-23 Score=164.35 Aligned_cols=110 Identities=26% Similarity=0.420 Sum_probs=98.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.|. .+.+|++.++ .+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 34799999999999999999999999998 6677887766 466788888999999999999999999999999999999
Q ss_pred EEEECCChhcHHHH-HHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l-~~wl~~i~~~~~~~vPiil 209 (209)
+|||+++++||+++ ..|++++.+.. +++|++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piil 137 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 137 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEE
Confidence 99999999999999 79999998876 4677764
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.89 E-value=1.8e-22 Score=155.06 Aligned_cols=112 Identities=27% Similarity=0.471 Sum_probs=104.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999988 77788899988888999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++.+|+++..|++.+.....+++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iil 116 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAI 116 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 999999999999999999999988767888764
No 20
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=164.40 Aligned_cols=112 Identities=25% Similarity=0.427 Sum_probs=93.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.+++|. .+.++.+.++....+.+++..+.+++||++|++++...+..+++++|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 44799999999999999999999999988 77788899998889999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|++.+......++|++|
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 138 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999888766778765
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=159.54 Aligned_cols=112 Identities=21% Similarity=0.476 Sum_probs=104.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++..++..+++++|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45799999999999999999999999988 77788999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|++.+......++|++|
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~il 126 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999998777888775
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.89 E-value=6.7e-23 Score=161.88 Aligned_cols=106 Identities=18% Similarity=0.330 Sum_probs=92.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
+...+||+++|++|||||||+++|+++.|. .+.+| +.++ .+.+.+++..+.+++|||+|+++|. +++++|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 345899999999999999999999999998 45555 4444 4788999999999999999999876 88999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
++|||+++++||+++..|++++..... .++|++|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 124 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVL 124 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999988754 5677764
No 23
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=4.9e-23 Score=163.24 Aligned_cols=112 Identities=21% Similarity=0.438 Sum_probs=97.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|+.|||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++++..++..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 34799999999999999999999999988 77788899999899999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++.+|+++..|++.+......++|++|
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 136 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999999999999999999999988767788775
No 24
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.89 E-value=1.2e-22 Score=158.94 Aligned_cols=112 Identities=23% Similarity=0.446 Sum_probs=103.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++...+..+++++|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999998 77788899998899999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|++++......++|++|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 120 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIIL 120 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999999999999999999999888767788775
No 25
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-22 Score=164.04 Aligned_cols=112 Identities=27% Similarity=0.471 Sum_probs=96.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|+++|..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45799999999999999999999999998 77788999998889999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++.+|+++..|+.++......++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piil 123 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGL 123 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 999999999999999999999988766788765
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=155.47 Aligned_cols=111 Identities=18% Similarity=0.432 Sum_probs=101.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999988 77888999999899999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|+.++.+.. +++|++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~il 118 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRIL 118 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 9999999999999999999998876 4677664
No 27
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=8.3e-23 Score=160.98 Aligned_cols=111 Identities=22% Similarity=0.505 Sum_probs=101.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC-CcchhhcccCcEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~-~~~~~~~~~ad~il 176 (209)
..+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++. .++..+++++|++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 4799999999999999999999999998 677888999998999999999999999999999988 88999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
+|||++++.||+++..|++++.+.. ..++|++|
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil 132 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL 132 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999999998875 45677764
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=9.8e-23 Score=156.51 Aligned_cols=110 Identities=24% Similarity=0.523 Sum_probs=96.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
.+||+++|++|||||||+++|.++++. .+.++++.++....+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 689999999999999999999999987 7778889898888889999899999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
||++++.+|+++..|+..+.+....++|++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 113 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLL 113 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999999999999999999998767788765
No 29
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=9e-23 Score=158.29 Aligned_cols=104 Identities=25% Similarity=0.490 Sum_probs=96.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCC-eEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~-~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
...+||+++|++|||||||+++|.++++. .+.+|++.++..+.+.+++ ..+.+++||++|++++..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 45799999999999999999999999998 6778899999888898876 679999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHC
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~ 201 (209)
++|||++++++|+++..|++++....
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~ 109 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVS 109 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998753
No 30
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=159.37 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=91.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.|. .+.+|++..+ ...+.+++..+.+++||++|+++|..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 445799999999999999999999999988 6667777554 56778889999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
++|||++++++|+++. .|++++.... +++|++|
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~il 129 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIIL 129 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 9999999999999997 8999999876 4677764
No 31
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.89 E-value=1.8e-22 Score=157.04 Aligned_cols=106 Identities=17% Similarity=0.302 Sum_probs=91.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
...+||+++|++|||||||+++|.+++|..+.+|++.. +.+.+.+++..+.+++||++|+++ ..+++++|++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 45799999999999999999999999998777777754 467888899999999999999987 578899999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhH---CCCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKW---NQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~---~~~~vPiil 209 (209)
|||+++++||+++..|++.+... ..+++|++|
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 113 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999987666554 335788775
No 32
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.89 E-value=3.1e-22 Score=158.30 Aligned_cols=112 Identities=19% Similarity=0.398 Sum_probs=99.1
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcE
Q 028396 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 96 ~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ 174 (209)
.....+||+++|++|||||||+++|.++.+. .+.+|++.++. ..+.+++..+.+++||++|+++|..++..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456899999999999999999999999998 67778887765 467889999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHH-HHHHHHHHhHCCCCceEEc
Q 028396 175 ILFMFDLTSRCTLNSI-VGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 175 illvyDit~~~Sf~~l-~~wl~~i~~~~~~~vPiil 209 (209)
+++|||+++++||+++ ..|++.+.+.. +++|++|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~il 132 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVL 132 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 9999999999999998 78999998776 5677764
No 33
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.89 E-value=2.3e-22 Score=158.02 Aligned_cols=110 Identities=26% Similarity=0.420 Sum_probs=98.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.|. .+.+|.+.++ ...+.+++..+.+++||++|++.|..++..+++++|++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 44799999999999999999999999998 6677887665 456788888999999999999999999999999999999
Q ss_pred EEEECCChhcHHHH-HHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l-~~wl~~i~~~~~~~vPiil 209 (209)
+|||+++++||+++ ..|++++.+.. +++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piil 116 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 116 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEE
Confidence 99999999999999 79999998876 5678764
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=4.7e-22 Score=155.04 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=98.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++ ...+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 45799999999999999999999999888 6777888777 678888999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
+|||++++++|+.+..|+.++.+... .++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 116 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999999977653 4677764
No 35
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.8e-24 Score=168.08 Aligned_cols=112 Identities=21% Similarity=0.488 Sum_probs=104.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++.+..++..+++++|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 45799999999999999999999999988 77778888999899999988999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|++++......++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 133 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 133 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999998777888775
No 36
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.4e-22 Score=159.05 Aligned_cols=112 Identities=25% Similarity=0.488 Sum_probs=104.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++++...+..+++++|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 34799999999999999999999999988 77889999998888888889999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|+.++.+....++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piii 133 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 999999999999999999999988767788765
No 37
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.89 E-value=3.1e-22 Score=159.22 Aligned_cols=111 Identities=24% Similarity=0.506 Sum_probs=103.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++++..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 4799999999999999999999999998 777888999988889999999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|||++++++|+++..|+.++......++|++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999999999999999988766788765
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=2e-22 Score=156.17 Aligned_cols=113 Identities=24% Similarity=0.420 Sum_probs=99.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 445799999999999999999999999988 7778899999888999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCC----CCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ----GNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~----~~vPiil 209 (209)
++|||++++.+|+++..|++++..... .++|++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~ 121 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEE
Confidence 999999999999999999999987643 5677664
No 39
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=162.53 Aligned_cols=112 Identities=24% Similarity=0.461 Sum_probs=94.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++..++..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999998 77788898998889999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|+.++......++|++|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 135 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 999999999999999999999887767788775
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4e-22 Score=157.49 Aligned_cols=111 Identities=17% Similarity=0.324 Sum_probs=98.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.|. .+.+|++.++ ...+.+++..+.+++||++|+++|..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 346799999999999999999999999988 6677777665 56678888889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
++|||+++++||+++. .|+.++.+.. +++|++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 127 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLL 127 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 9999999999999998 8999999876 3677664
No 41
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.88 E-value=3.8e-22 Score=159.86 Aligned_cols=110 Identities=21% Similarity=0.414 Sum_probs=96.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.|. .+.+|++.++ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 35799999999999999999999999998 6677777655 466778888999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++. .|++++.... +++|++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 118 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVL 118 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 999999999999997 8999999886 4677764
No 42
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.88 E-value=3.5e-22 Score=156.05 Aligned_cols=112 Identities=10% Similarity=0.165 Sum_probs=100.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++.++ ...+.+++..+.+++||++|++++..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 455899999999999999999999999988 6777777776 67788899999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhH-CCCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKW-NQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~-~~~~vPiil 209 (209)
++|||+++++||+++..|+.++.+. ...++|++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 128 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999999999764 346677764
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.88 E-value=8.8e-23 Score=162.76 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=97.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC-cchhhcccCcEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~-~~~~~~~~ad~i 175 (209)
...+||+++|++|||||||+++|.+..+. .+.++++.++..+.+.+++..+.+++||++|++.+.. ++..+++++|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 34799999999999999999999876555 5556777888888889999999999999999998775 788899999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
|+|||+++++||+++..|+.++..... .++|++|
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 135 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999988764 4678764
No 44
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=2.8e-22 Score=153.71 Aligned_cols=110 Identities=18% Similarity=0.387 Sum_probs=101.0
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4789999999999999999999999988 778888999998999999999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|||++++++|+++..|+.++.... .++|++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~piil 114 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV-GDIPTAL 114 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-CSCCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 999999999999999999998765 4566654
No 45
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=3.2e-23 Score=165.04 Aligned_cols=112 Identities=21% Similarity=0.476 Sum_probs=100.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++++..++..+++++|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999999988 67778898999899999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++..|+.++......++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~il 143 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 999999999999999999999887767788775
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.88 E-value=7e-22 Score=153.20 Aligned_cols=111 Identities=13% Similarity=0.193 Sum_probs=98.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++. ..+.+++..+.+++||++|++++..++..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 44799999999999999999999999988 67778887765 77888998999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHh-HCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARK-WNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~-~~~~~vPiil 209 (209)
+|||++++++|+++..|+.++.+ ....++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 119 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999999854 4445677764
No 47
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.9e-22 Score=156.86 Aligned_cols=113 Identities=23% Similarity=0.524 Sum_probs=103.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|+++||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 456799999999999999999999999998 7778889999888999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
|+|||++++.+|+++..|++++.+... .++|++|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~il 126 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNML 126 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEE
Confidence 999999999999999999999987653 5677664
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=159.25 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=93.5
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.+|++.++ ...+.+++..+.+++||++|++++..++..+++++|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 345899999999999999999999999998 6667777776 67777888889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
++|||++++++|+.+..|+.++.... ..++|++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 134 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999999998764 34677764
No 49
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=5.5e-22 Score=158.88 Aligned_cols=112 Identities=21% Similarity=0.400 Sum_probs=95.5
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcE
Q 028396 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 96 ~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ 174 (209)
.....+||+++|++|||||||+++|.++.+. .+.++++ +.....+.+++..+.+++||++|+++|..++..+++++|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3456899999999999999999999999998 5666665 4556778889999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 175 ILFMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 175 illvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
+++|||++++++|+++. .|++.+.+.. +++|++|
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 139 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL 139 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 99999999999999997 8999999886 5677764
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=6.9e-22 Score=157.88 Aligned_cols=112 Identities=22% Similarity=0.493 Sum_probs=102.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++.+..++..+++.+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999999987 77888999998888999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++.+|+++..|+.++......++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 130 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 130 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999988766788765
No 51
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=153.17 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=88.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC--CCCcchhhcccCcEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~--~~~~~~~~~~~ad~il 176 (209)
..+||+++|++|||||||+++|.++.+....++.|.++..+.+.+++..+.+++||++|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 36899999999999999999999998886667888888888899999999999999999998 5667788999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
+|||+++++||+++..|+.++.+.. ..++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piil 116 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 9999999999999999999998753 34677664
No 52
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=1.9e-22 Score=163.06 Aligned_cols=115 Identities=24% Similarity=0.373 Sum_probs=104.1
Q ss_pred CCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccC
Q 028396 94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (209)
Q Consensus 94 ~~~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~a 172 (209)
.......+||+++|++|||||||+++|+.+.+. .+.++.|.++....+.+++..+.+++|||+|++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 334456899999999999999999998888887 6778889999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 173 d~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|++++|||++++.||+++..|+.++.+.. +++|++|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~il 124 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVL 124 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 99999999999999999999999999886 4677664
No 53
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=3.5e-22 Score=155.02 Aligned_cols=112 Identities=22% Similarity=0.377 Sum_probs=88.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~-~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.++ +..+.+++||++|++.+...+..+++++|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 34799999999999999999999999988 777888889888888887 6678999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCC----CCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ----GNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~----~~vPiil 209 (209)
|+|||++++.+|+++..|+.++..... .++|++|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~il 123 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEE
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEE
Confidence 999999999999999999999987643 5677764
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=8.4e-22 Score=150.84 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=97.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.+|++.++ .+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988 6667777665 4667788889999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||+++++||+++..|++++.+.. ..++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 113 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 113 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEE
Confidence 999999999999999999998753 35677664
No 55
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=3.9e-22 Score=162.02 Aligned_cols=113 Identities=15% Similarity=0.236 Sum_probs=94.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCC--CCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC-CCCcchhhcccCc
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAV 173 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~--f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~-~~~~~~~~~~~ad 173 (209)
....+||+++|++|||||||+++|++.. |...++++|.++..+.+.+++..+.+.+|||+|++. +..+.+.|++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3447999999999999999999999644 455566788898888999999999999999999987 5557788899999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 174 AILFMFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 174 ~illvyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
++|+|||+++++||+++..|+.++.+.. ..++|+||
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piil 150 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 9999999999999999999999887642 35678765
No 56
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=8e-22 Score=156.86 Aligned_cols=112 Identities=26% Similarity=0.405 Sum_probs=101.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 34799999999999999999999999988 77788899999999999998999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCC----CCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQ----GNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~----~~vPiil 209 (209)
+|||++++.+|+++..|+.++..... .++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 99999999999999999999877642 3567654
No 57
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.87 E-value=8.8e-22 Score=151.47 Aligned_cols=110 Identities=14% Similarity=0.230 Sum_probs=84.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC-cchhhcccCcEEEE
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF 177 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~-~~~~~~~~ad~ill 177 (209)
.+||+++|++|||||||+++|.+..+. ...++.+.++....+.+++..+.+++||++|++++.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 589999999999999999999988877 5566677888888899999999999999999999876 78888999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
|||+++++||+++..|+.++.+... .++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 114 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 9999999999999999999988764 4778764
No 58
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=1e-21 Score=153.70 Aligned_cols=112 Identities=23% Similarity=0.418 Sum_probs=100.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeE-EEEEeeCCe---------EEEEEEEeCCCCCCCCCcch
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~-~~~~~~~~~---------~~~l~iwD~~G~e~~~~~~~ 166 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++. .+.+.+++. .+.+++||++|++++...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999988 77788898887 677777766 78999999999999999999
Q ss_pred hhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 167 ~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
.+++++|++|+|||++++.+|+++..|++++..... .++|++|
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 132 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEE
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999999999999988764 5677764
No 59
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.87 E-value=2.4e-21 Score=151.00 Aligned_cols=110 Identities=23% Similarity=0.434 Sum_probs=97.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
+..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 35799999999999999999999999988 6666776554 566788999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
+|||+++++||+++. .|+..+.+..+ ++|++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil 114 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIIL 114 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 999999999999997 79999988763 677664
No 60
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.9e-21 Score=155.82 Aligned_cols=110 Identities=22% Similarity=0.418 Sum_probs=92.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+++||++|++++..++..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45789999999999999999999999998 66677776665 34778888999999999999999999999999999999
Q ss_pred EEEECCChhcHHHH-HHHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l-~~wl~~i~~~~~~~vPiil 209 (209)
+|||++++++|+++ ..|++.+.... +++|++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 134 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIIL 134 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 99999999999999 68999998876 4567654
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.87 E-value=1.6e-22 Score=160.58 Aligned_cols=112 Identities=11% Similarity=0.292 Sum_probs=74.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEeeCCe--EEEEEEEeCCCCCCCCCcchhhcccC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA 172 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~--~f~-~~~~t~g~~~~~~~~~~~~~--~~~l~iwD~~G~e~~~~~~~~~~~~a 172 (209)
...+||+++|++|||||||+++|.++ .+. .+.+|++.++..+.+.+++. .+.+++||++|++++..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45799999999999999999999999 887 77778888888889999887 89999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHhHCC---CCceEEc
Q 028396 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ---GNKIELI 209 (209)
Q Consensus 173 d~illvyDit~~~Sf~~l~~wl~~i~~~~~---~~vPiil 209 (209)
|++|+|||++++++|+++..|++++..... .++|++|
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 137 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVL 137 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEE
Confidence 999999999999999999999999999876 5788775
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.87 E-value=2.1e-21 Score=152.69 Aligned_cols=109 Identities=24% Similarity=0.456 Sum_probs=98.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeE------------------------------
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------ 147 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~------------------------------ 147 (209)
..+||+++|++|||||||+++|+++.+. .+.++++.++....+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999999998 777888999988888887765
Q ss_pred -------EEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 148 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 148 -------~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+.+++||++|++.+...+..+++.+|++|+|||++++.+|+++..|+.++....+ .|++|
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piil 152 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIIL 152 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEE
Confidence 8999999999999999999999999999999999999999999999999988764 66654
No 63
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.87 E-value=2.8e-21 Score=154.09 Aligned_cols=109 Identities=22% Similarity=0.414 Sum_probs=97.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+++||++|+++|..++..+++++|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 5799999999999999999999999998 67778877765 457788889999999999999999999999999999999
Q ss_pred EEECCChhcHHHH-HHHHHHHHhHCCCCceEEc
Q 028396 178 MFDLTSRCTLNSI-VGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l-~~wl~~i~~~~~~~vPiil 209 (209)
|||++++++|+++ ..|++.+.+.. +++|++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 134 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIIL 134 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 9999999999999 68999998876 4667664
No 64
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=158.09 Aligned_cols=110 Identities=25% Similarity=0.423 Sum_probs=77.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999999988 5666666544 567788999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
+|||+++++||+++. .|++++.+.. +++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 143 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIV 143 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 999999999999997 8999998876 5677664
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.87 E-value=1.6e-21 Score=151.92 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=97.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 455799999999999999999999999988 6666776555 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
++|||++++++|+.+..|+.++..... .++|++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 128 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLL 128 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999988653 4677764
No 66
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=2.5e-21 Score=153.97 Aligned_cols=111 Identities=15% Similarity=0.252 Sum_probs=91.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC-CCCcchhhcccCcEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI 175 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~--~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~-~~~~~~~~~~~ad~i 175 (209)
..+||+++|++|||||||+++|++. .|...++++|.++..+.+.+++..+.+.+||++|++. +..+.+.+++.+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 3689999999999999999999964 3455566788888888899999999999999999887 566788899999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
++|||+++++||+++..|+..+.+.. ..++|++|
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piil 119 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEE
Confidence 99999999999999999999888753 35678764
No 67
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=1.6e-21 Score=149.59 Aligned_cols=109 Identities=15% Similarity=0.236 Sum_probs=73.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEE
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvy 179 (209)
.+||+++|++|||||||+++|.+..+....++.+.++ ...+.+++..+.+++||++|++.+..++..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999999877765556666555 467788999999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 180 DLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 180 Dit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|+++++||+++..|+.++.+.. ..++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 111 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIIL 111 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999998753 35677764
No 68
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.86 E-value=6.6e-22 Score=153.89 Aligned_cols=110 Identities=20% Similarity=0.403 Sum_probs=82.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++..+. ..+.+++..+.+++||++|++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 34789999999999999999999999988 66677775553 44666778899999999999999999999999999999
Q ss_pred EEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
+|||+++++||+++. .|++.+.+.. +++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 117 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVL 117 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 999999999999997 7999999876 3677664
No 69
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=3.3e-21 Score=147.05 Aligned_cols=110 Identities=14% Similarity=0.222 Sum_probs=96.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||++++.++.+. .+.++++. ...+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988 55566664 446778889999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
|||++++++|+++..|+.++.+... .++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 113 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL 113 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999999987653 5677764
No 70
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.86 E-value=3e-22 Score=161.01 Aligned_cols=112 Identities=25% Similarity=0.479 Sum_probs=99.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCe----------EEEEEEEeCCCCCCCCCcch
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~----------~~~l~iwD~~G~e~~~~~~~ 166 (209)
...+||+++|+++||||||+++|.++.+. .+.+|++.++..+.+.+++. .+.++|||++|+++|...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 34799999999999999999999999998 67788898988888888776 78999999999999999999
Q ss_pred hhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 167 ~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
.+++++|++|+|||++++.+|+++..|++++..... .++|++|
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piil 146 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEE
Confidence 999999999999999999999999999999877654 5677764
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.86 E-value=4.4e-21 Score=150.80 Aligned_cols=111 Identities=12% Similarity=0.221 Sum_probs=86.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
+..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 45799999999999999999999999888 5555666544 467788888999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
+|||++++.+|+++..|++++..... .++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~il 131 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVL 131 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 99999999999999999999987653 4677664
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=5.4e-21 Score=149.34 Aligned_cols=110 Identities=12% Similarity=0.227 Sum_probs=94.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++++ +.....+.+++..+.+++||++|++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4789999999999999999999999988 5555554 5556778889999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||++++++|+.+..|+..+.... ..++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~ 114 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 114 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 999999999999999999998864 35677764
No 73
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=2.8e-21 Score=147.58 Aligned_cols=110 Identities=14% Similarity=0.221 Sum_probs=94.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||++++.++++. .+.++++.++ ...+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4689999999999999999999999988 6666776555 4567788889999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
|||++++++|+.+..|+.++.+... .++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 114 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLL 114 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999999988653 4677764
No 74
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=152.65 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=98.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
+...+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 445799999999999999999999999988 6666777554 46678888899999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
++|||++++++|+.+..|+.++..... .++|++|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 124 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLL 124 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999988763 4677764
No 75
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.86 E-value=8.7e-21 Score=150.53 Aligned_cols=111 Identities=24% Similarity=0.469 Sum_probs=101.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|+.|||||||++++.+..+. .+.+|++.++....+.+++..+.+++||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34799999999999999999999999998 78889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCCCCceEE
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
+|||+++..+|+++..|+.++.+....+.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~ 138 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIM 138 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 99999999999999999999887665566765
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.86 E-value=7e-22 Score=155.28 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=93.8
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-C-----------ccccceeeeEEEEE-eeCCeEEEEEEEeCCCCCCCC
Q 028396 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-R-----------SLQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 96 ~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~-----------~~~t~g~~~~~~~~-~~~~~~~~l~iwD~~G~e~~~ 162 (209)
.....+||+++|++|||||||+ +++.+.+. . +.+|.+.++....+ .+++..+.+++|||+|+++|.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456899999999999999999 55556666 4 23577888877766 778889999999999999999
Q ss_pred CcchhhcccCcEEEEEEECC------ChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 163 DHVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 163 ~~~~~~~~~ad~illvyDit------~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
.++..+++++|++|+|||++ +.++|+++..|+.+++.. ..++|++|
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piil 140 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVI 140 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEE
Confidence 99999999999999999999 678999999999998533 36677764
No 77
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.3e-21 Score=151.13 Aligned_cols=110 Identities=12% Similarity=0.221 Sum_probs=96.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++++. .+.+|++.++ ...+.+++..+.+++||++|++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 45799999999999999999999999998 6667777655 56678889999999999999998 778899999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
+|||++++++|+++..|+..+.+.. ..++|++|
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil 137 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 9999999999999999999998754 35777764
No 78
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.85 E-value=7.2e-22 Score=155.47 Aligned_cols=109 Identities=13% Similarity=0.362 Sum_probs=85.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEee---CCeEEEEEEEeCCCCCCCCCcchhhcccCc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~--~f~-~~~~t~g~~~~~~~~~~---~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad 173 (209)
.+||+++|++|||||||+++|.+. .+. .+.+|+|.++..+.+.+ ++..+.+++||++|+++|..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 565 56778899988776655 346788999999999999999999999999
Q ss_pred EEEEEEECCCh-hcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 174 ~illvyDit~~-~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
++++|||++++ .+|+++..|+.++.... +++|++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piil 117 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVIL 117 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEE
Confidence 99999999998 58999999999998776 4677764
No 79
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=5.5e-21 Score=152.53 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=85.0
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
...+||+++|++|||||||+++|.++++..+.+|.+.+. ..+.+++ +.+++|||+|++++..++..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 346899999999999999999999998887777777653 4666776 789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||+++++||+++..|+.++.+.. ..++|++|
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 131 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILI 131 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEE
Confidence 999999999999999999987642 35677764
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=2.4e-21 Score=152.83 Aligned_cols=107 Identities=19% Similarity=0.321 Sum_probs=92.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++++. .+.+|++.++.. +.. ..+.+++||++|++++..++..+++++|++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 4799999999999999999999999998 777888877653 333 35789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||++++++|+++..|+.++.+.. ..++|++|
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 129 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 999999999999999999887642 25677664
No 81
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.85 E-value=2.5e-21 Score=155.68 Aligned_cols=113 Identities=22% Similarity=0.357 Sum_probs=98.3
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCC-eEEEEEEEeCCCCCCCCCcchhhcccCcE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~-~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ 174 (209)
....+||+++|++|||||||+++|+++.+. .+.++.+.++....+..++ ..+.+++||++|++.+..++..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 445899999999999999999999999888 6667888777766665544 44899999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 175 illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|+|||++++.+|+++..|+.++......++|++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 122 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999999999999999999987766677764
No 82
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.85 E-value=4.9e-21 Score=149.95 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=91.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
..+||+++|++|||||||+++|.++++..+.+|.|.++ +.+.+++ +.+++||++|++++..++..+++++|++++|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999999876677788654 3555555 7899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
||++++++|+++..|+.++.+.. ..++|++|
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 127 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLI 127 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEE
Confidence 99999999999999999887642 35677764
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=8e-21 Score=149.68 Aligned_cols=107 Identities=19% Similarity=0.227 Sum_probs=90.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCC-CC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~-f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
..+||+++|++|||||||+++|.++. +. .+.+|++. ....+.+++ +.+.+||++|++++..++..+++++|++|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 36899999999999999999999988 55 66667774 345566664 68999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHCC---CCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWNQ---GNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~~---~~vPiil 209 (209)
+|||+++++||+++..|+.++.+... .++|++|
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piil 131 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILF 131 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEE
Confidence 99999999999999999999877542 4677664
No 84
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.85 E-value=1.6e-20 Score=142.82 Aligned_cols=110 Identities=12% Similarity=0.235 Sum_probs=95.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||++++.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 3589999999999999999999999888 5555665443 5677888889999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCC-CCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQ-GNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~-~~vPiil 209 (209)
|||++++++|+++..|++++..... .++|++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~ii 113 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999999988653 4677664
No 85
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.84 E-value=2e-20 Score=148.93 Aligned_cols=111 Identities=24% Similarity=0.504 Sum_probs=98.8
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|+.|||||||++++.+..+. .+.++++.++....+.+++..+.+++||++|++++..++..++++++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 3689999999999999999999999988 777888889888899999999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|||+++..+|+++..|+.++......+.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~ 115 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIML 115 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999998876555667653
No 86
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=145.07 Aligned_cols=109 Identities=14% Similarity=0.248 Sum_probs=94.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
.+||+++|++|||||||+++|.++.+. .+.++.+.++. ..+..++..+.+++||++|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 689999999999999999999999988 66677775553 5567788889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhHCC--CCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKWNQ--GNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~~~--~~vPiil 209 (209)
||++++++|+++..|+..+.+... +++|++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~ 114 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIML 114 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 999999999999999998887532 4567654
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=1.7e-20 Score=148.60 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=92.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
...+||+++|++|||||||+++|.++++..+.+|.+.+ ...+.+++ +.+++|||+|++++..++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 44689999999999999999999999988777777765 45666776 789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||+++++||+++..|+.++.+.. ..++|++|
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 129 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVI 129 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEE
Confidence 999999999999999999987642 25677764
No 88
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=6e-21 Score=150.65 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=83.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~--~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....||+++|++|||||||+++|.++.+.. +.+|++..+. .+. +..+.+++|||+|++++..++..+++++|++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 347899999999999999999999999874 3667775543 333 4558899999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHhH
Q 028396 176 LFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 176 llvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
|+|||+++++||+++..|+.++.+.
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~ 115 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKH 115 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988664
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=6.2e-21 Score=146.00 Aligned_cols=105 Identities=21% Similarity=0.312 Sum_probs=89.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEE
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyD 180 (209)
+||+++|++|||||||+++|.+++|..+.+|.+.. ...+.. ..+.+++||++|++++..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999999988777788744 334444 34789999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHhH-CCCCceEEc
Q 028396 181 LTSRCTLNSIVGWYSEARKW-NQGNKIELI 209 (209)
Q Consensus 181 it~~~Sf~~l~~wl~~i~~~-~~~~vPiil 209 (209)
+++++||+++..|+.++... ...++|++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piil 106 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLV 106 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEE
Confidence 99999999999999988764 235677764
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=1e-20 Score=150.24 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=85.1
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEe--e-CCeEEEEEEEeCCCCCCCCCcc---hhhcc
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLM--V-QGARIAFSIWDVGGDSRSFDHV---PIACK 170 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~--~-~~~~~~l~iwD~~G~e~~~~~~---~~~~~ 170 (209)
+...+||+++|++|||||||++++.+. +... ++.+.++..+.+. + ++..+.+++||++|+++|.... ..+++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC-CCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc-CCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 344789999999999999999977764 4422 4555554444433 3 3677899999999999998776 89999
Q ss_pred cCcEEEEEEECCCh--hcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 171 DAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 171 ~ad~illvyDit~~--~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
++|++|+|||++++ ++++.+..|+.++.... +++|++|
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piil 134 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEV 134 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEE
Confidence 99999999999998 77788888888886655 5778775
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=1.7e-20 Score=144.25 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=91.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
..+||+++|++|||||||+++|.++++..+.+|++... ..+.++ .+.+++||++|++.+...+..+++++|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 36899999999999999999999999887777887554 445555 47899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
||++++++|+++..|+.++.+.. ..++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 113 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEEEELRKAILVV 113 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhCCCEEEE
Confidence 99999999999999998886643 25677764
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.9e-20 Score=147.15 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=88.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
..+||+++|++|||||||+++|.++++..+.+|++.+. +.+.+++ +.+++||++|++++..++..+++++|++++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 46899999999999999999999998886677777554 4555554 7899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
||+++++||+++..|+.++.+.. ..++|++|
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 122 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLI 122 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEE
Confidence 99999999999999999987753 24677764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.83 E-value=1e-20 Score=148.65 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=91.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
..+||+++|++|||||||+++|.++.+..+.+|.|.. .+.+.++ .+.+++||++|++.+...+..+++++|++++|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4689999999999999999999998776777788854 3455565 47899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhH-CCCCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKW-NQGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~-~~~~vPiil 209 (209)
||++++++|+++..|+.++.+. ...++|++|
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 122 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLI 122 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEE
T ss_pred EECcCHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 9999999999999999988653 235677764
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.83 E-value=2.6e-20 Score=147.74 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=86.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
...+||+++|++|||||||+++|.++++..+.+|.+.. ...+..+ .+.+++||++|++++..++..+++++|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 44799999999999999999999999988767777744 3445554 4789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||++++++|+++..|+.++.+.. ..++|++|
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piil 135 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLV 135 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEE
Confidence 999999999999999999887632 34677764
No 95
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.7e-20 Score=147.99 Aligned_cols=110 Identities=14% Similarity=0.225 Sum_probs=95.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++.+.++ ...+.+++..+.+++||++|++++..++..+++.+|++++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4689999999999999999999999988 6666777554 3566778889999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHCC--CCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWNQ--GNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~~--~~vPiil 209 (209)
|||++++++|+++..|+..+.+... .++|++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piil 119 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML 119 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999988877542 3567654
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=4.1e-20 Score=145.31 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=91.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
..+||+++|+++||||||++++.++++..+.+|++... ..+.++ .+.+++|||+|++++...+..+++++|++++|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 47899999999999999999999998887777877543 345554 47899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
||++++++|+++..|+.++.+.. ..++|++|
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 128 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLI 128 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEE
Confidence 99999999999999998887643 35677764
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=6.2e-20 Score=143.70 Aligned_cols=108 Identities=21% Similarity=0.286 Sum_probs=91.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
...+||+++|++|||||||++++.+++...+.+|++.+. ..+.++ .+.+++|||+|++++...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 347999999999999999999999988447778888553 455555 4789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||+++++||+++..|+.++.+.. ..++|++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 124 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLI 124 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEE
Confidence 999999999999999999887642 25677764
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=5.2e-20 Score=143.44 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=88.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
...+||+++|++|||||||++++.++++..+.+|.+... ..+.+++ +.+++||++|++++...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 347899999999999999999999988876677777553 4455554 789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||++++++|+++..|+.++.+.. ..++|++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 124 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLV 124 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEE
Confidence 999999999999999999987754 35677764
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=1.7e-21 Score=155.39 Aligned_cols=111 Identities=23% Similarity=0.434 Sum_probs=95.7
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++||++|++++...+..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 345799999999999999999999999988 5666666444 55667788889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
++|||++++++|+++. .|+..+....+ ++|++|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piil 139 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIIL 139 (204)
Confidence 9999999999999997 89999887653 566654
No 100
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.80 E-value=4.5e-19 Score=150.63 Aligned_cols=108 Identities=23% Similarity=0.434 Sum_probs=96.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
.+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+++||++|++.+...+..+++++|++++|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 589999999999999999999999988 6666776554 56778899999999999999999999999999999999999
Q ss_pred EECCChhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 179 FDLTSRCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
||++++.||+++. .|++.+....+ ++|++|
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~il 264 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCP-NTPIIL 264 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCT-TSCEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEE
Confidence 9999999999997 89999988764 677764
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.80 E-value=8.4e-20 Score=157.38 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=79.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC---cchhhcccCcE
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA 174 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~f~~----~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~---~~~~~~~~ad~ 174 (209)
||+++|+.|||||||++++.++.++. ..+|+|.++.. + +..++++||||+|||+|.. .++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988765543 45688888763 2 2458999999999999974 46899999999
Q ss_pred EEEEEECCCh--hcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 175 ILFMFDLTSR--CTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 175 illvyDit~~--~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|+|||++++ ++++.+.+|++++.+.. +++|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipill 111 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEV 111 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEE
Confidence 9999999998 33344445566666555 5788775
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.5e-20 Score=155.05 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=86.6
Q ss_pred eeeeEEEEcCC---------CCCHHHHHHHHhc---CCCC-Cccccc-eeeeEEEEEe--------------eCCeEEEE
Q 028396 99 VSLKISLLGDC---------QIGKTSFVVKYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIAF 150 (209)
Q Consensus 99 ~~~KIvvvGd~---------~vGKTSLi~rl~~---~~f~-~~~~t~-g~~~~~~~~~--------------~~~~~~~l 150 (209)
..+||+++|++ |||||||+++|++ +.|. .+.+++ +.++..+.+. +++..+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 36999999999 9999999999999 5666 566665 6666555443 46778999
Q ss_pred EEEe-----------------------CCCCCCCCCcchhhcc---------------------cCcEEEEEEECCCh--
Q 028396 151 SIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR-- 184 (209)
Q Consensus 151 ~iwD-----------------------~~G~e~~~~~~~~~~~---------------------~ad~illvyDit~~-- 184 (209)
+||| ++|+++|..++..+|+ ++|++|+|||++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 9999 8899999999999988 89999999999999
Q ss_pred hcHHHHHHHHHHHHhH-CCCCceEEc
Q 028396 185 CTLNSIVGWYSEARKW-NQGNKIELI 209 (209)
Q Consensus 185 ~Sf~~l~~wl~~i~~~-~~~~vPiil 209 (209)
+||+++..|+.++.+. ...++|++|
T Consensus 178 ~s~~~~~~~l~~i~~~~~~~~~piil 203 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLAKTKKPIVV 203 (255)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCCCEEE
Confidence 9999999999999875 335677764
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=3.3e-19 Score=142.83 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=85.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCe-EEEEEEEeCCCCCCCCC-cchhhcccCcEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~-~~~l~iwD~~G~e~~~~-~~~~~~~~ad~i 175 (209)
...+||+++|++|||||||+++|+++.|...+++++.++.. +.+++. .+.+++|||+|+++|.. ++..|++++|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 34789999999999999999999999998655666666654 566654 68899999999999987 888999999999
Q ss_pred EEEEECCChh-cHHHHHH-HHHHHHhH--CCCCceEEc
Q 028396 176 LFMFDLTSRC-TLNSIVG-WYSEARKW--NQGNKIELI 209 (209)
Q Consensus 176 llvyDit~~~-Sf~~l~~-wl~~i~~~--~~~~vPiil 209 (209)
|+|||+++.+ ++.++.. |.+.+... ...++|++|
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piil 120 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLI 120 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEE
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEE
Confidence 9999999964 5666655 44444442 345678765
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=8.2e-19 Score=158.38 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=93.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
....+||+++|+++||||||+++|.++++..+.+|.+.++.. +.. ..+.++||||+|++.|..++..+++++|++|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 345799999999999999999999999988777888877553 333 3478999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 177 FMFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 177 lvyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
+|||++++++|+++..|+.++.+.. ..++|+||
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 428 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILI 428 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEE
Confidence 9999999999999999999886643 25678765
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.77 E-value=8.2e-19 Score=151.27 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=86.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
...+||+++|+++||||||+++|.++++....+|++.++.. +.. ..+.++||||+|++.|..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~--~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEE--EEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEE--Eec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34789999999999999999999999988666788876543 333 34789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 178 MFDLTSRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 178 vyDit~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|||++++++|+.+..|+.++.... .+++|+||
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 271 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLV 271 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEE
Confidence 999999999999998888775533 35778775
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=1.9e-18 Score=147.47 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=85.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCC-----CCcchhhcc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK 170 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~--~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~-----~~~~~~~~~ 170 (209)
.+||+++|++|||||||+++|.++ .+. .+.+|.+.++.. +.+++ .+.+++||++|++.+ ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 689999999999999999999987 333 244566766654 34444 688999999999998 788999999
Q ss_pred cCcEEEEEEECCChhcHHHHHHHHHHH---HhHCCCCceEEc
Q 028396 171 DAVAILFMFDLTSRCTLNSIVGWYSEA---RKWNQGNKIELI 209 (209)
Q Consensus 171 ~ad~illvyDit~~~Sf~~l~~wl~~i---~~~~~~~vPiil 209 (209)
++|++|+|||+++++||+++..|.+.+ .... +++|++|
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piil 120 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFV 120 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEE
Confidence 999999999999999999998775544 4444 5688775
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.74 E-value=1.3e-17 Score=129.06 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=74.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++. .+.+|||+|++++..++..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34789999999999999999999999988 66667777777677777775 4679999999999999999999999999
Q ss_pred EEEECCChh
Q 028396 177 FMFDLTSRC 185 (209)
Q Consensus 177 lvyDit~~~ 185 (209)
+|||++++.
T Consensus 84 ~v~d~~~~~ 92 (178)
T 2lkc_A 84 LVVAADDGV 92 (178)
T ss_dssp EEEETTCCC
T ss_pred EEEECCCCC
Confidence 999999943
No 108
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=1.2e-17 Score=130.25 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=85.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcc--------hhhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~--------~~~~ 169 (209)
.+||+++|++|||||||+++|.+..+. ...+++..++....+.+++. .+++|||+|++++.... ..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 579999999999999999999988753 44555566777778888874 47899999998754321 2468
Q ss_pred ccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 170 ~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+++|++++|||++++.||+ ...|++++.+....++|++|
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~il 120 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITV 120 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEE
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEE
Confidence 9999999999999999987 45898988887656788764
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=4.6e-17 Score=125.69 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=76.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC------cchhhcc--
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIACK-- 170 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~------~~~~~~~-- 170 (209)
.+||+++|++|||||||+++|.+..+. ...++++.+.....+.+++ ..+++|||+|++++.. +...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 589999999999999999999998876 6666666666666666665 5799999999998863 3466765
Q ss_pred cCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 171 ~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
++|++++|||.++.+ ....|+.++.+. ++|++|
T Consensus 81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~il 113 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLL 113 (165)
T ss_dssp CCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEE
T ss_pred CCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEE
Confidence 899999999999854 455688887653 456654
No 110
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=7.7e-18 Score=135.21 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=85.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhccc--
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 171 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~----~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~-- 171 (209)
...+||+++|++|||||||+++|.++.+.. +.++++.++ ..+.+++||++|++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 346899999999999999999999988763 333444333 44678999999999999999999988
Q ss_pred --CcEEEEEEECC-ChhcHHHHHHHHHHHHhH----CCCCceEEc
Q 028396 172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----NQGNKIELI 209 (209)
Q Consensus 172 --ad~illvyDit-~~~Sf~~l~~wl~~i~~~----~~~~vPiil 209 (209)
+|++|+|||++ ++++|+++..|+.++... ...++|++|
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 125 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence 89999999999 999999999999988764 345677764
No 111
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.3e-17 Score=131.20 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=80.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCc----cccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhccc--
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 171 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~----~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~-- 171 (209)
...+||+++|++|||||||++++.+..+... .++++.++ ..+.+.+||++|++.+...+..++++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 3468999999999999999999999887532 22222222 34678999999999999888888877
Q ss_pred --CcEEEEEEECC-ChhcHHHHHHHHHHHHhH----CCCCceEEc
Q 028396 172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----NQGNKIELI 209 (209)
Q Consensus 172 --ad~illvyDit-~~~Sf~~l~~wl~~i~~~----~~~~vPiil 209 (209)
+|++|+|||++ ++++|+++..|+.++... ...++|++|
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 161 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 161 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEE
Confidence 89999999999 999999999999888654 335677764
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=1.1e-16 Score=125.23 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=82.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC------Ccchhhcc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK 170 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~------~~~~~~~~ 170 (209)
+..+||+++|++|||||||+++|.+..+. ...+++..+.....+..++ ..+++|||+|++.+. .+...+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 45799999999999999999999998776 6667767677767777765 678999999999885 34566765
Q ss_pred --cCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 171 --DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 171 --~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
.++++++|+|.++ +++...|+.++.+. ++|++|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~---~~piil 117 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLMEM---GANLLL 117 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHTT---TCCEEE
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHhc---CCCEEE
Confidence 4999999999875 67778898888763 456553
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.68 E-value=6.7e-18 Score=154.05 Aligned_cols=110 Identities=23% Similarity=0.434 Sum_probs=84.4
Q ss_pred CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEE------Eee--CCeEEEEEEEeCCCCCCCCCcch
Q 028396 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 96 ~~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~------~~~--~~~~~~l~iwD~~G~e~~~~~~~ 166 (209)
.....+||+++|++|||||||++++.++.|. .+.+|+|.++.++. +.+ ++..+.+.+||++|++.|..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3466899999999999999999999999998 77788898887653 222 34568899999999999999999
Q ss_pred hhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 167 ~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
.+++++|++|+|||+++. +.+..|++++.... ++.|+||
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvil 155 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIV 155 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEE
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEE
Confidence 999999999999999864 66788999999887 4567664
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.65 E-value=6.5e-16 Score=125.39 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=73.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC---------Ccchhh
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIA 168 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~---------~~~~~~ 168 (209)
..+||+++|++|||||||+++|+++.+. ...+.+..++....+..++ ..+.+|||+|+.... .....+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 3689999999999999999999999886 3333333333333334443 679999999994311 112345
Q ss_pred cccCcEEEEEEECCChhcHHH--HHHHHHHHHhHCCCCceEEc
Q 028396 169 CKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 169 ~~~ad~illvyDit~~~Sf~~--l~~wl~~i~~~~~~~vPiil 209 (209)
+..+|++|+|||++++.+|+. ...|+..+.... +++|++|
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piil 147 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVI 147 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEE
Confidence 788999999999999999863 336777776643 3567654
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.64 E-value=4.8e-16 Score=118.05 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=63.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC-------Ccchhhccc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-------DHVPIACKD 171 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~-------~~~~~~~~~ 171 (209)
.||+++|++|||||||+++|.++.+. ...+++..+.....+..++. .+.+||++|++.+. ..+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999998764 44445555666667777664 68899999998742 345567899
Q ss_pred CcEEEEEEECCChhcHH
Q 028396 172 AVAILFMFDLTSRCTLN 188 (209)
Q Consensus 172 ad~illvyDit~~~Sf~ 188 (209)
+|++++|||++++.+..
T Consensus 80 ~~~~i~v~d~~~~~~~~ 96 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA 96 (161)
T ss_dssp CSEEEEEEESSSCCCHH
T ss_pred CCEEEEEEECCCcccHh
Confidence 99999999999975543
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.62 E-value=4.3e-16 Score=122.38 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=65.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCC----------CCCCCCcchh
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 167 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G----------~e~~~~~~~~ 167 (209)
..+||+++|++|||||||+++|.+++|. .+.++.+.+.....+.+++ .+.+|||+| ++.+..++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4689999999999999999999999866 5555666555444445544 589999999 6677777888
Q ss_pred hcccC---cEEEEEEECCChhcHHHHH
Q 028396 168 ACKDA---VAILFMFDLTSRCTLNSIV 191 (209)
Q Consensus 168 ~~~~a---d~illvyDit~~~Sf~~l~ 191 (209)
+++.+ |++++|||++++.++....
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ 125 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH
Confidence 88887 9999999999998988754
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=8.5e-17 Score=125.61 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=73.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCC-----------CCCCCCcchhh
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA 168 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G-----------~e~~~~~~~~~ 168 (209)
+||+++|++|||||||+++|.++.+. .+.+++..+. ..+.++ .+.+|||+| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999887 5555444333 334443 588999999 66677778888
Q ss_pred ccc-CcEEEEEEECCChhcHHHH-HHHHHH
Q 028396 169 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE 196 (209)
Q Consensus 169 ~~~-ad~illvyDit~~~Sf~~l-~~wl~~ 196 (209)
+++ ++++++||++.|.++|+++ ..|.++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~ 105 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKR 105 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhcc
Confidence 888 9999999999999999998 678763
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.57 E-value=2.3e-14 Score=119.40 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=77.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcc------hhhc-
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV------PIAC- 169 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~------~~~~- 169 (209)
...+||+++|++|||||||+++|.+..+. ...+.+..+.....+..++ ..+++||++|++.+...+ ..|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 34789999999999999999999998876 5555554454444444443 689999999999887633 5666
Q ss_pred -ccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 170 -KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 170 -~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
.++|++++|||.++.++. .+|..++.+. ++|++|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvil 115 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVIL 115 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEE
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEE
Confidence 589999999999987654 3577776654 456653
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.57 E-value=8e-15 Score=125.10 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=80.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccce--eeeEEEEEeeCCeEEEEEEEeCCCCCCCC----------Ccc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAG--LNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHV 165 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g--~~~~~~~~~~~~~~~~l~iwD~~G~e~~~----------~~~ 165 (209)
...-.|+++|.+|||||||++++++.++....+..+ .+.....+..+ ...++.||||+|+.++. ...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 346799999999999999999999988762222222 22222222332 25779999999998765 456
Q ss_pred hhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 166 ~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
..+++++|++++|+|.++..++++...|++.+... ++|+++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvil 127 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIV 127 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEE
Confidence 77889999999999999999999999999988774 355553
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.57 E-value=8.4e-15 Score=122.00 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=75.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC----------cchhhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC 169 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~----------~~~~~~ 169 (209)
.||+++|.+|||||||+++|.+..+. ...+++..+.....+.+++. .+.+|||+|+..+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998776 66677777777777777765 789999999988764 456677
Q ss_pred --ccCcEEEEEEECCChhcHHHHHHHHH
Q 028396 170 --KDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 170 --~~ad~illvyDit~~~Sf~~l~~wl~ 195 (209)
.++|++|+|+|.++.+++..+..|+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~ 107 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF 107 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH
Confidence 89999999999999877766555543
No 121
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=7.4e-15 Score=122.23 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=76.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcc------
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------ 170 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~------ 170 (209)
..+||+++|+.|+|||||+++|.+.++. ...+.+..+.....+..++ ..+.+|||+|++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4799999999999999999999998863 3333333344444555555 47899999999988777666654
Q ss_pred ---cCcEEEEEEECCChhcHHHH-HHHHHHHHhHCCC
Q 028396 171 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQG 203 (209)
Q Consensus 171 ---~ad~illvyDit~~~Sf~~l-~~wl~~i~~~~~~ 203 (209)
++|++|+|+|+++.. |.+. ..|++.+.+..+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~ 148 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK 148 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch
Confidence 889999999998765 5544 4888888876443
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.54 E-value=9.7e-15 Score=114.11 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=71.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCC----------CCCCCCcchh
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 167 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G----------~e~~~~~~~~ 167 (209)
...+||+++|+.|||||||+++|.++++....++.+.+........+. .+.+|||+| ++.+..++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 346899999999999999999999998665556666554433333332 477999999 6667777788
Q ss_pred hcccC---cEEEEEEECCChhcHH--HHHHHHHH
Q 028396 168 ACKDA---VAILFMFDLTSRCTLN--SIVGWYSE 196 (209)
Q Consensus 168 ~~~~a---d~illvyDit~~~Sf~--~l~~wl~~ 196 (209)
+++.+ +++++|+|.++..+.. .+..|+.+
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 131 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS 131 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 88877 9999999999874443 34456554
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.54 E-value=1.6e-14 Score=121.41 Aligned_cols=101 Identities=21% Similarity=0.127 Sum_probs=75.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC------Ccchhhcc--
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 170 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~------~~~~~~~~-- 170 (209)
.+||+++|++|||||||+++|.+..+. ...+ |.++..+...++. ...+++||++|++.+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 579999999999999999999987654 4444 3333344445555 6679999999999886 35567776
Q ss_pred cCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 171 ~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
++|++++|||.++.+++ ..|..++.+. ++|++|
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~~p~il 112 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIET---GIPVTI 112 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHHT---CSCEEE
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHhc---CCCEEE
Confidence 69999999999986554 4677766653 456553
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.54 E-value=2.8e-14 Score=121.59 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=74.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEeeCCeEEEEEEEeCCCCCCC--------CCcch
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVP 166 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~-t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~--------~~~~~ 166 (209)
....+|+++|.+|||||||+++|++.++. ...+ |+. +.....+.. ...++.||||+|+++. .....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 45678999999999999999999998875 2222 332 222222222 3478999999999874 33456
Q ss_pred hhcccCcEEEEEEECCChhcHHHHHHHH-HHHHhHCCCCceEEc
Q 028396 167 IACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQGNKIELI 209 (209)
Q Consensus 167 ~~~~~ad~illvyDit~~~Sf~~l~~wl-~~i~~~~~~~vPiil 209 (209)
.+++++|++++|||.+++.+.. ..|+ +.+.+.. +++|+++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~il 122 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILL 122 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEE
T ss_pred HHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEE
Confidence 7889999999999999886654 3454 5666553 3567654
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.54 E-value=3.3e-14 Score=119.35 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=72.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCc----------chh
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI 167 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~----------~~~ 167 (209)
..+||+++|.+|||||||+++|.+..+. ...+.+..+.....+..++. .+.+|||+|++.+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 3689999999999999999999998876 56666666666666666654 5788999999987732 233
Q ss_pred hc--ccCcEEEEEEECCChhcHHHHHHHHHH
Q 028396 168 AC--KDAVAILFMFDLTSRCTLNSIVGWYSE 196 (209)
Q Consensus 168 ~~--~~ad~illvyDit~~~Sf~~l~~wl~~ 196 (209)
|+ .++|++++|+|.++.+++..+..|+.+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~ 110 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLE 110 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHh
Confidence 33 799999999999997665554444443
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.52 E-value=8.7e-14 Score=116.19 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=80.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC------cchhhc--
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC-- 169 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~------~~~~~~-- 169 (209)
..+||+++|++|||||||++++.+..+. ...++++.+.....+..++. .+.+||++|+..+.. ....|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 3689999999999999999999998886 66677777777777777664 489999999998876 566666
Q ss_pred ccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEE
Q 028396 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 170 ~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
.++|++++|+|.++.+ ....|..++.+.. .+|++
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~i 113 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNII 113 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEE
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEE
Confidence 6899999999999853 3445555555543 15554
No 127
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.51 E-value=7.6e-15 Score=120.09 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=62.8
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEeeCCeEEEEEEEeCCCCC-----------CCCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS-----------RSFD 163 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~--t~g~~~~~~~~~~~~~~~~l~iwD~~G~e-----------~~~~ 163 (209)
...+||+++|++|||||||++++.+..+. ...+ ++..+.....+.+++. .+.+|||+|.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHH
Confidence 44799999999999999999999998876 4444 3444555556666664 57899999943 3334
Q ss_pred cchhhcccCcEEEEEEECCChhc
Q 028396 164 HVPIACKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 164 ~~~~~~~~ad~illvyDit~~~S 186 (209)
....+++++|++|+|+|+++...
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~ 127 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE 127 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH
Confidence 44556678899999999986544
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.51 E-value=3.1e-14 Score=128.46 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=61.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcc--------hhhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~--------~~~~ 169 (209)
.+||+++|++|||||||+++|.+.+.. ...+.+..++....+.+++ +.+.+|||+|++++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 689999999999999999999988643 5556666677777777876 568999999998766443 4478
Q ss_pred ccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 170 ~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+++|++|+|||.+++.+++++..|...+.... ++|+++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIv 348 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLT 348 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEE
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEE
Confidence 99999999999999999875443333222222 466653
No 129
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.50 E-value=3.1e-14 Score=118.86 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=74.6
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchh---------hc
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI---------AC 169 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~---------~~ 169 (209)
..+||+++|++|+|||||+++|++..+....++.+.+.....+.++.....+.+|||+|++.+...... ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 378999999999999999999998886422222222222233333334567999999999877644332 13
Q ss_pred ccCcEEEEEEECCChhcHHHH-HHHHHHHHhHCCCC--ceEE
Q 028396 170 KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGN--KIEL 208 (209)
Q Consensus 170 ~~ad~illvyDit~~~Sf~~l-~~wl~~i~~~~~~~--vPii 208 (209)
+.+|++|+|||++.. +|... ..|++.+.+..+.+ .|++
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~ii 158 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAI 158 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEE
Confidence 479999999999764 46554 48888887764332 4554
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.49 E-value=8.3e-14 Score=115.11 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=56.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccceee--eEEEEEeeCCeEEEEEEEeCCCC--------CCCCCcchhh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLN--LINKTLMVQGARIAFSIWDVGGD--------SRSFDHVPIA 168 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~--~~~~~~~~~~~~~~l~iwD~~G~--------e~~~~~~~~~ 168 (209)
.+||+++|.+|||||||++++.+.++. ....+.+.+ .....+..++ ..+.+|||+|. +++......+
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 799999999999999999999988766 433333322 2233444454 56889999997 4443333333
Q ss_pred c----ccCcEEEEEEECCC
Q 028396 169 C----KDAVAILFMFDLTS 183 (209)
Q Consensus 169 ~----~~ad~illvyDit~ 183 (209)
+ +++|++|+|+|+++
T Consensus 99 ~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB
T ss_pred HHhcCCCCCEEEEEEeCCC
Confidence 3 89999999999985
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.48 E-value=2.5e-14 Score=127.40 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=75.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCC----------CCCCcch
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVP 166 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e----------~~~~~~~ 166 (209)
..+||+++|++|||||||++++++.++. ...+.+..+.....+..++.. +++|||+|+. .|..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999998874 455555666666677777754 8899999983 3333333
Q ss_pred -hhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 167 -IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 167 -~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
.+++.+|++++|||++++.++++. +|+..+.+. +.|++|
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~~~iii 291 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---GKAVVI 291 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCEEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---CCcEEE
Confidence 478899999999999999999886 588777653 355553
No 132
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.47 E-value=2.3e-14 Score=115.03 Aligned_cols=106 Identities=13% Similarity=0.029 Sum_probs=70.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeC-CeEEEEEEEeCCCCC----------CCCCcch
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDHVP 166 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~-~~~~~l~iwD~~G~e----------~~~~~~~ 166 (209)
...||+++|+.|||||||+++|+++++. ....+.+.........+. .....+.||||+|.. .+..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 3689999999999999999999998742 222222322222233333 344678999999953 3344555
Q ss_pred hhccc---CcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEE
Q 028396 167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 167 ~~~~~---ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
.|++. +|++++|+|.++..+. .-..|++.+.+. ++|++
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~---~~p~i 148 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPT---GKPIH 148 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGG---CCCEE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhc---CCCEE
Confidence 66666 7789999999986552 234566666653 34554
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.47 E-value=1.2e-13 Score=123.07 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=64.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCC---------CCcchhhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC 169 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~---------~~~~~~~~ 169 (209)
-||+++|.++||||||+++|+++++. ...+.+..+.....+.+++.. +++|||+|++.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999988754 444555556666777777754 789999998753 23456789
Q ss_pred ccCcEEEEEEECCChhcHHH--HHHHHH
Q 028396 170 KDAVAILFMFDLTSRCTLNS--IVGWYS 195 (209)
Q Consensus 170 ~~ad~illvyDit~~~Sf~~--l~~wl~ 195 (209)
+++|++|+|||.++..++.. +..|+.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~ 107 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR 107 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999998766543 334443
No 134
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.47 E-value=8.8e-14 Score=120.43 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=56.6
Q ss_pred eEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECC----------ChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 146 ~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit----------~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
..+.+++||++||++++.+|..||++++++|||||++ +.++|++...|++++.... ..++|+||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiL 233 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLI 233 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEE
Confidence 3578999999999999999999999999999999999 7899999999999887643 36788875
No 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.46 E-value=4.9e-13 Score=110.45 Aligned_cols=84 Identities=15% Similarity=0.081 Sum_probs=62.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC-CC-Ccccc-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcch--------
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------- 166 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~-f~-~~~~t-~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~-------- 166 (209)
...+||+++|.+|||||||++++++.. +. ...++ +..+.....+..++ ..+.||||+|+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999887 54 33333 34444444555555 4689999999877643322
Q ss_pred ---hhcccCcEEEEEEECCC
Q 028396 167 ---IACKDAVAILFMFDLTS 183 (209)
Q Consensus 167 ---~~~~~ad~illvyDit~ 183 (209)
.+++.+|++|+|||+++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTC
T ss_pred HHHhcCCCCcEEEEEEeCCC
Confidence 26789999999999996
No 136
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.46 E-value=5.7e-14 Score=122.32 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=55.5
Q ss_pred eEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECC----------ChhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 146 ~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit----------~~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
..+.+++|||+||+.|+.+|..||++++++|||||++ +.++|+++..|++++.+.. .+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiL 255 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 255 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEE
Confidence 6789999999999999999999999999999999999 8899999999999987643 35788875
No 137
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.43 E-value=5.5e-13 Score=114.88 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=59.3
Q ss_pred ccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECC----------ChhcHHHHHHHHHHHHh
Q 028396 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARK 199 (209)
Q Consensus 130 ~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit----------~~~Sf~~l~~wl~~i~~ 199 (209)
+|+|+.. ..+.++ .+.+++||++||++++.+|..||++++++|||||++ +.++|++...|++++..
T Consensus 153 ~TiGi~~--~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 153 PTTGIIE--YPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CCCSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred ceeeEEE--EEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 3455432 334444 488999999999999999999999999999999665 77888888888888876
Q ss_pred HC-CCCceEEc
Q 028396 200 WN-QGNKIELI 209 (209)
Q Consensus 200 ~~-~~~vPiil 209 (209)
.. ..++|+||
T Consensus 229 ~~~~~~~~iiL 239 (327)
T 3ohm_A 229 YPWFQNSSVIL 239 (327)
T ss_dssp SGGGTTCEEEE
T ss_pred hhccCCceEEE
Confidence 43 25688875
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.42 E-value=7.3e-14 Score=124.40 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=65.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCC--------CCCCcchhhccc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACKD 171 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e--------~~~~~~~~~~~~ 171 (209)
..||+++|.+|||||||+++|.+..+....++.|.+.......+......+++|||+|++ ++......+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 369999999999999999999988775334444543333333333333568999999986 455566788999
Q ss_pred CcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 172 ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+|++|+|+|.++..++.. .|+.++.+. .+.|++|
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvil 116 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVL 116 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEE
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEE
Confidence 999999999999877654 344443322 3456654
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.42 E-value=2.2e-13 Score=118.08 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=79.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCC----CCCCCcchhhccc---C
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----SRSFDHVPIACKD---A 172 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~----e~~~~~~~~~~~~---a 172 (209)
.+|+++|.++||||||++++.+.++. ..++.+..+.....+.+++ ...+.+||++|+ +.+..+...|++. +
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999987654 3333222222223445543 246899999994 4566676777665 9
Q ss_pred cEEEEEEECCC---hhcHHHHHHHHHHHHhHCC--CCceEEc
Q 028396 173 VAILFMFDLTS---RCTLNSIVGWYSEARKWNQ--GNKIELI 209 (209)
Q Consensus 173 d~illvyDit~---~~Sf~~l~~wl~~i~~~~~--~~vPiil 209 (209)
+++|+|||+++ +++++++..|++++..+.+ .+.|++|
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~il 279 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 279 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCB
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEE
Confidence 99999999999 8999999999999998753 3566654
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.40 E-value=2.1e-12 Score=112.13 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=77.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC---------cchhh
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA 168 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~---------~~~~~ 168 (209)
..++|+++|++|||||||++++.+..+. ...+....+.....+..+ ...+++|||+|...... ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 3679999999999999999999988764 333322222222333333 36789999999865421 11234
Q ss_pred cccCcEEEEEEECCChh--cHHHHHHHHHHHHhHCCCCceEEc
Q 028396 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 169 ~~~ad~illvyDit~~~--Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
...+|++++|+|+++.+ ++++...|+.++....+ +.|+++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piil 285 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLV 285 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEE
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEE
Confidence 45799999999999988 88999999999988653 566654
No 141
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.40 E-value=2.6e-13 Score=120.77 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=71.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcc-------hhh
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PIA 168 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~-------~~~ 168 (209)
...+||+++|+.++|||||+++|.+.++. ...+.+..+...+.+.+++. ..+.+|||+|++.+..+. ..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 34789999999999999999999998874 34444445556666666654 278999999999887653 448
Q ss_pred cccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEE
Q 028396 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 169 ~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
++++|++|+|||.+.. +....|+.++.+. ++|++
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piI 144 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFV 144 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEE
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEE
Confidence 8999999999999333 3445777777765 35554
No 142
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.39 E-value=6.9e-13 Score=115.40 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=57.7
Q ss_pred EEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCC----------hhcHHHHHHHHHHHHhHC-CCCceEE
Q 028396 140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKWN-QGNKIEL 208 (209)
Q Consensus 140 ~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~----------~~Sf~~l~~wl~~i~~~~-~~~vPii 208 (209)
.+.++ .+.+++||++||+.++.+|..||++++++|||||+++ .++|++...|++++.... ..++|+|
T Consensus 187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 34444 4789999999999999999999999999999999999 567999999999987642 2568887
Q ss_pred c
Q 028396 209 I 209 (209)
Q Consensus 209 l 209 (209)
|
T Consensus 265 L 265 (353)
T 1cip_A 265 L 265 (353)
T ss_dssp E
T ss_pred E
Confidence 5
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.38 E-value=3.9e-13 Score=121.41 Aligned_cols=90 Identities=18% Similarity=0.367 Sum_probs=73.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCC-CCCC--------cchhh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFD--------HVPIA 168 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e-~~~~--------~~~~~ 168 (209)
.+||+++|.+|||||||++++.+.++. ..++.+..++....+.+++. .+.+|||+|++ ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999988653 55666666777777888764 58999999998 6643 23467
Q ss_pred cccCcEEEEEEECCChhcHHHHH
Q 028396 169 CKDAVAILFMFDLTSRCTLNSIV 191 (209)
Q Consensus 169 ~~~ad~illvyDit~~~Sf~~l~ 191 (209)
++.+|++|+|||++++.+++..+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH
T ss_pred hhcccEEEEEecCCCCCCHHHHH
Confidence 89999999999999999987754
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=9.3e-14 Score=124.39 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=71.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCC--------CCCCCCcchhhc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIAC 169 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G--------~e~~~~~~~~~~ 169 (209)
+...+|+++|.+|||||||++++.+.++....++.|.+.......++.....+++|||+| ++++......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 335799999999999999999999987764444556655555555555556899999999 566667788899
Q ss_pred ccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 170 ~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+.+|++|+|+|..+.-+ ....|+.++.+. .+.|++|
T Consensus 101 ~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvil 136 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVL 136 (456)
T ss_dssp HHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEE
T ss_pred hhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEE
Confidence 99999999999877444 333444444333 3456553
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.38 E-value=1.3e-12 Score=114.06 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=73.0
Q ss_pred eee-EEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC---------CCCcchhh
Q 028396 100 SLK-ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA 168 (209)
Q Consensus 100 ~~K-IvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~---------~~~~~~~~ 168 (209)
.++ |+++|.+|+|||||++++.+..+. ...+....+.....+.+++ ..+.+|||+|.-. |... ...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence 456 999999999999999999998775 3344344455667788877 4578999999632 1112 225
Q ss_pred cccCcEEEEEEECCChh--cHHHHHHHHHHHHhHCCCCceEE
Q 028396 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 169 ~~~ad~illvyDit~~~--Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
+..+|++++|+|++++. +++.+..|.+.+......+.|+|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~i 296 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPIL 296 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEE
Confidence 78999999999999987 67777778777766554556654
No 146
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.37 E-value=6.4e-13 Score=118.92 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=76.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCC----------CCCCCCcc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHV 165 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G----------~e~~~~~~ 165 (209)
...+||+++|+++||||||+++|.+.+.. ...+++..+.....+..++. .+++|||+| +|+|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 34789999999999999999999977633 56666666766677777775 688999999 67776665
Q ss_pred hh-hcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 166 PI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 166 ~~-~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
.. +++.+|++|+|+|.++..+ +....|+..+.+ .+.|++|
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~il 311 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVI 311 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEE
Confidence 54 7889999999999998655 333466666655 2356553
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.37 E-value=1.6e-12 Score=108.70 Aligned_cols=106 Identities=8% Similarity=0.115 Sum_probs=68.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCC-C-Cc-------cccceeeeEEEEEeeCCeEEEEEEEeCCCCCCC-------C
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ-E-RS-------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------F 162 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f-~-~~-------~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~-------~ 162 (209)
..+||+++|.+|+|||||++++++... . ++ .+|++.+.....+..++..+.+.+|||+|.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 378999999999999999999776554 3 33 567777887777777788889999999998432 2
Q ss_pred Ccc-------hhhccc-------------CcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEE
Q 028396 163 DHV-------PIACKD-------------AVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 163 ~~~-------~~~~~~-------------ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
.+. ..|+.. +|+++++++.++..-.+.-..+++.+.. ++|+|
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi 148 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNII 148 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEE
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEE
Confidence 222 333332 6788888877764322333456666654 45554
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.37 E-value=5.9e-13 Score=119.68 Aligned_cols=97 Identities=21% Similarity=0.369 Sum_probs=67.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcc--------hhh
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIA 168 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~--------~~~ 168 (209)
..+||+++|++|||||||+++|.+.++. ...+++..++....+.+++. .+.+|||+|...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3689999999999999999999987653 45566666666667777774 57899999987654432 346
Q ss_pred cccCcEEEEEEECCChhcHHHHHHHHHHHH
Q 028396 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 169 ~~~ad~illvyDit~~~Sf~~l~~wl~~i~ 198 (209)
++.+|++++|||.+++.+++. ..|++.+.
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~ 329 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK 329 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc
Confidence 889999999999999888766 56666664
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=114.95 Aligned_cols=108 Identities=8% Similarity=0.151 Sum_probs=67.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC-CCC-Ccc--------ccceeeeEEEEEeeCCeEEEEEEEeCCCC-------CC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR 160 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~-~f~-~~~--------~t~g~~~~~~~~~~~~~~~~l~iwD~~G~-------e~ 160 (209)
...+||+++|+.|+|||||++++.+. .+. .+. +|++.++....+..++..+.+++|||+|+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 34789999999999999999997654 343 222 45666665555666777889999999999 77
Q ss_pred CCCcch-------hhcccCcEE-----------EEEEECCC-hhcHHHHH-HHHHHHHhHCCCCceEEc
Q 028396 161 SFDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 161 ~~~~~~-------~~~~~ad~i-----------llvyDit~-~~Sf~~l~-~wl~~i~~~~~~~vPiil 209 (209)
+..+.. .|+++++++ +++|++++ ..+|..+. .|++.+. .++|+|+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~~piIl 179 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NKVNIVP 179 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S-SCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cCCCEEE
Confidence 888876 777766655 48888887 67887776 5665542 4556553
No 150
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.33 E-value=5.5e-12 Score=111.16 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=76.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccc----cceee------------eEEEEEee---CCeEEEEEEEeCCCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ----MAGLN------------LINKTLMV---QGARIAFSIWDVGGD 158 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~----t~g~~------------~~~~~~~~---~~~~~~l~iwD~~G~ 158 (209)
...+||+++|..++|||||+++|.+........ +.+.. ........ ......+.+|||+|+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 447899999999999999999999754332110 11100 00000000 122378999999999
Q ss_pred CCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHC
Q 028396 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 159 e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~ 201 (209)
++|......++..+|++|+|+|.++..++....+|+..+....
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~ 128 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG 128 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC
Confidence 9999888899999999999999999988889999988877665
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.31 E-value=3.2e-13 Score=123.33 Aligned_cols=105 Identities=9% Similarity=0.072 Sum_probs=79.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEE
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illv 178 (209)
..+|+++|..++|||||+++|.+..+. .+.+++..++....+..++ ...++||||+|++.|..++..+++.+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 578999999999999999999988777 5555555555544454422 23688999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 179 FDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 179 yDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
||.++....+....| ..+.. .++|++|
T Consensus 83 VDa~dg~~~qt~e~l-~~~~~---~~vPiIV 109 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHAKD---AHVPIVL 109 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHHHT---TTCCEEE
T ss_pred EECCCCccHHHHHHH-HHHHH---cCCcEEE
Confidence 999997766555443 33332 3456653
No 152
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.30 E-value=1.4e-12 Score=117.21 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=56.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc--CCCCC--------------------------------ccccceeeeEEEEEee
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVG--NEQER--------------------------------SLQMAGLNLINKTLMV 143 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~--~~f~~--------------------------------~~~t~g~~~~~~~~~~ 143 (209)
...+||+++|..++|||||+++|+. +.+.+ .-.|++.. ...+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~--~~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG--RAYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee--eEEEec
Confidence 4468999999999999999999974 22210 00122222 123333
Q ss_pred CCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCCh---hcHHHHHHHHHHH
Q 028396 144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEA 197 (209)
Q Consensus 144 ~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~---~Sf~~l~~wl~~i 197 (209)
+ ...+.||||+|+++|......++..+|++|+|+|.++. .||+....|.+.+
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l 173 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA 173 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH
Confidence 3 36789999999999998888889999999999999986 4555443444433
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.28 E-value=7.9e-12 Score=111.54 Aligned_cols=86 Identities=9% Similarity=0.098 Sum_probs=64.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CC-CccccceeeeEEEEEeeCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------------------------------QE-RSLQMAGLNLINKTLMVQG 145 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~-------------------------------f~-~~~~t~g~~~~~~~~~~~~ 145 (209)
...++|+++|..++|||||+++|+... +. +..+.+..+.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 347899999999999999999995431 11 111223344444444444
Q ss_pred eEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChh
Q 028396 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185 (209)
Q Consensus 146 ~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~ 185 (209)
...+.||||+|+++|......+++.+|++|+|+|.++..
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE 132 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence 457999999999999888888999999999999999863
No 154
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=1.1e-11 Score=108.09 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=67.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEeeCCe---------------EEEEEEEeCCCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS 161 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~--t~g~~~~~~~~~~~~~---------------~~~l~iwD~~G~e~~ 161 (209)
.+||.++|.+|||||||++++.+..+. ..++ |++.+.. .+.+++. ...+++||++|+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 479999999999999999999988754 4343 3333322 3444443 257999999999875
Q ss_pred C----Ccc---hhhcccCcEEEEEEECCCh----------hcHHHHHHHHHHHH
Q 028396 162 F----DHV---PIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEAR 198 (209)
Q Consensus 162 ~----~~~---~~~~~~ad~illvyDit~~----------~Sf~~l~~wl~~i~ 198 (209)
. .+. ..+++.+|++++|+|+++. +.++.+..|..++.
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~ 133 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELA 133 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHH
Confidence 3 232 2357999999999999973 56677666655553
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.26 E-value=6.4e-12 Score=113.28 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=65.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC--CC-Cc---------------------------cccceeeeEEEEEeeCCeE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE-RS---------------------------LQMAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~--f~-~~---------------------------~~t~g~~~~~~~~~~~~~~ 147 (209)
...+||+++|..++|||||+++|++.. +. .+ ....|.++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 347999999999999999999997651 11 00 0011333333344444556
Q ss_pred EEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhcHHH
Q 028396 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189 (209)
Q Consensus 148 ~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~ 189 (209)
..+.||||+|+++|......+++.+|++|+|+|.++..++..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~ 152 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccc
Confidence 789999999999999989999999999999999999866544
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.26 E-value=1.5e-12 Score=115.88 Aligned_cols=100 Identities=13% Similarity=0.221 Sum_probs=71.2
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCC-Ccc---------------------c------cceeeeEEEEEeeCCeEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSL---------------------Q------MAGLNLINKTLMVQGARI 148 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~--~f~-~~~---------------------~------t~g~~~~~~~~~~~~~~~ 148 (209)
..+||+++|..++|||||+++|+++ .+. ... . ..|.........++....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4689999999999999999999864 333 110 0 011111111222334456
Q ss_pred EEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHh
Q 028396 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 149 ~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~ 199 (209)
.+.||||+|+++|......+++.+|++|+|||.++ .+|+++..|..+.++
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~ 134 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTRE 134 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHH
Confidence 79999999999998888889999999999999999 899987766555544
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.26 E-value=6.1e-12 Score=116.22 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=69.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----ccceeeeEEEEE------------eeCCeEEEEEEEeCCCCCCC
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~-----~t~g~~~~~~~~------------~~~~~~~~l~iwD~~G~e~~ 161 (209)
+..+|+++|..++|||||++++.+..+..+. +++|..+..... .++.....++||||+|++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999999876554322 234433322110 00011235899999999999
Q ss_pred CCcchhhcccCcEEEEEEECCC---hhcHHHHHH
Q 028396 162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVG 192 (209)
Q Consensus 162 ~~~~~~~~~~ad~illvyDit~---~~Sf~~l~~ 192 (209)
..++..+++.+|++|+|||.++ +++++.+..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 9999999999999999999999 788877653
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.25 E-value=2.3e-11 Score=108.27 Aligned_cols=89 Identities=15% Similarity=0.277 Sum_probs=63.1
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCc-----------c
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----------V 165 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~-----------~ 165 (209)
..+||+++|++|||||||++++.+..+. ...+.+..+.....+.+++. .+.+|||+|++++... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 3689999999999999999999988763 44444445555567777876 4789999998543221 1
Q ss_pred -hhhcccCcEEEEEEECCChhcHHH
Q 028396 166 -PIACKDAVAILFMFDLTSRCTLNS 189 (209)
Q Consensus 166 -~~~~~~ad~illvyDit~~~Sf~~ 189 (209)
..+++.+|++++++|.++..+++.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 246788999999999999888765
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.25 E-value=8.3e-12 Score=110.05 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=75.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--------CCCCc--------cccceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~--------~f~~~--------~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~ 161 (209)
...+||+++|..++|||||+++|.+. .|..+ ..+.|.++......++.....+.||||+|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 44789999999999999999999873 22211 012344443344445445567899999999999
Q ss_pred CCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhH
Q 028396 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 162 ~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
......+++.+|++|+|+|.++... ....+|+..+...
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~ 126 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV 126 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc
Confidence 8888888999999999999998764 4456677666654
No 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.23 E-value=1.7e-11 Score=104.13 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=69.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEeeCCeEEEEEEEeCCCCC---------CCCCcc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHV 165 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~-t~g~~~~~~~~~~~~~~~~l~iwD~~G~e---------~~~~~~ 165 (209)
....+|+++|.+|||||||++++++..+. ...+ ++. +.....+..+ ..++.+|||+|.+ .+....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 44568999999999999999999988764 2222 221 1111222333 4678999999997 345556
Q ss_pred hhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 166 ~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
..+++.+|++++|+|.++ +.....|+-+.... .+.|++|
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~il 121 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVIL 121 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEE
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEE
Confidence 778899999999999987 43444555433321 3456553
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.22 E-value=6.2e-12 Score=114.74 Aligned_cols=106 Identities=10% Similarity=0.104 Sum_probs=76.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc------------------CCCCCccc---cceeeeEEEEEeeCCeEEEEEEEeCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG------------------NEQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~------------------~~f~~~~~---t~g~~~~~~~~~~~~~~~~l~iwD~~G~ 158 (209)
..+|+++|.+++|||||+++|+. ..+.+..+ ..|..+......++...+.++||||+|+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 57999999999999999999961 11111111 1233333333333334578999999999
Q ss_pred CCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 159 e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
+.|......+++.+|++|+|+|.++..+.+....|. .+... ++|+++
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~---~iPiiv 139 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR---HTPIMT 139 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT---TCCEEE
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc---CCCEEE
Confidence 999999999999999999999999998888877663 34433 456553
No 162
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.21 E-value=5.5e-11 Score=113.86 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=74.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC------------CCCCc-----c--ccceeeeEEEEEe------------eCCeE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN------------EQERS-----L--QMAGLNLINKTLM------------VQGAR 147 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~------------~f~~~-----~--~t~g~~~~~~~~~------------~~~~~ 147 (209)
...||+++|..++|||||+++++.. .+.+. . .|+........+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4679999999999999999999864 12110 1 1222222222232 24557
Q ss_pred EEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHH
Q 028396 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 148 ~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i 197 (209)
+.++||||+|+.+|...+..+++.+|++|+|||.++..+++....|....
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 147 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL 147 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999887776543
No 163
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.21 E-value=1.3e-11 Score=114.00 Aligned_cols=106 Identities=11% Similarity=0.173 Sum_probs=72.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCC--CC---------Ccc---ccceeeeEEEEEee-----CCeEEEEEEEeCCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~--f~---------~~~---~t~g~~~~~~~~~~-----~~~~~~l~iwD~~G~e~ 160 (209)
..+|+++|..++|||||+++|+... +. +.. .+.|.++....+.+ ++..+.++||||+|++.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 5689999999999999999998621 11 111 12344444333333 56679999999999999
Q ss_pred CCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEEc
Q 028396 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIELI 209 (209)
Q Consensus 161 ~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPiil 209 (209)
|......+++.+|++|+|+|.++..+++....|...... ++|+|+
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIv 128 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVP 128 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEE
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEE
Confidence 998889999999999999999999999988888766542 356553
No 164
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.20 E-value=3.6e-11 Score=106.20 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=63.9
Q ss_pred cceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCC----------hhcHHHHHHHHHHHHhH
Q 028396 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW 200 (209)
Q Consensus 131 t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~----------~~Sf~~l~~wl~~i~~~ 200 (209)
|+|+++ ..+.+++ +.++||||+||+.++.+|..||++++++|||||+++ .++|+++..|++++...
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 556654 3455554 889999999999999999999999999999999999 99999999999999875
Q ss_pred C-CCCceEEc
Q 028396 201 N-QGNKIELI 209 (209)
Q Consensus 201 ~-~~~vPiil 209 (209)
. ..++|+||
T Consensus 280 ~~~~~~piiL 289 (402)
T 1azs_C 280 RWLRTISVIL 289 (402)
T ss_dssp TTCSSCCEEE
T ss_pred ccCCCCeEEE
Confidence 3 36788775
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.20 E-value=1.2e-11 Score=98.12 Aligned_cols=93 Identities=12% Similarity=0.204 Sum_probs=57.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCC----------CCcchhh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----------FDHVPIA 168 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~----------~~~~~~~ 168 (209)
..+|+++|++|||||||++++.+..+. .+.++.|.......+.+++ .+.+||++|.... ......+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 579999999999999999999988755 4455666554444444443 4789999998532 1122234
Q ss_pred c---ccCcEEEEEEECCChhcHHH--HHHHHH
Q 028396 169 C---KDAVAILFMFDLTSRCTLNS--IVGWYS 195 (209)
Q Consensus 169 ~---~~ad~illvyDit~~~Sf~~--l~~wl~ 195 (209)
+ ..++++++++|+++..++.. +..|+.
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~ 134 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV 134 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHH
Confidence 4 47899999999999877643 345543
No 166
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=108.23 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=52.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCe---------------EEEEEEEeCCCCCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD 163 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~---------------~~~l~iwD~~G~e~~~~ 163 (209)
..+|.++|.+|||||||++++.+..+. ..++.+..+.....+.+++. ...+++||++|..+...
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 579999999999999999999988765 44554444444445555543 24599999999887543
Q ss_pred -------cchhhcccCcEEEEEEECCChhcHHHH
Q 028396 164 -------HVPIACKDAVAILFMFDLTSRCTLNSI 190 (209)
Q Consensus 164 -------~~~~~~~~ad~illvyDit~~~Sf~~l 190 (209)
....+++++|++++|+|+++.+++.++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v 135 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDITHV 135 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC---------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence 445678999999999999987776543
No 167
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=7.3e-11 Score=104.10 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=59.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc------cceeeeEEEE---------------EeeCC-eEEEEEEEeCCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ------MAGLNLINKT---------------LMVQG-ARIAFSIWDVGG 157 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~------t~g~~~~~~~---------------~~~~~-~~~~l~iwD~~G 157 (209)
+||+++|.++||||||++++.+.... ..++ +.|..+.... ..+++ ..+.++||||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999988743 3332 2232211100 01233 257899999999
Q ss_pred CCC----CCCcch---hhcccCcEEEEEEECCCh-----------hcHHHHHHHHHHHHh
Q 028396 158 DSR----SFDHVP---IACKDAVAILFMFDLTSR-----------CTLNSIVGWYSEARK 199 (209)
Q Consensus 158 ~e~----~~~~~~---~~~~~ad~illvyDit~~-----------~Sf~~l~~wl~~i~~ 199 (209)
... ...+.. .+++++|++++|+|+++. +.++.+..|..++..
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~ 140 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDY 140 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHH
Confidence 854 222333 457899999999999987 677777766666654
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.19 E-value=2.1e-11 Score=102.16 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=67.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc------cccc-----------------e---eee--------------
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS------LQMA-----------------G---LNL-------------- 136 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~------~~t~-----------------g---~~~-------------- 136 (209)
....||+++|++|||||||+++|.+.++. .. .++. | .++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999998873 11 1210 0 000
Q ss_pred ---------EEEEEeeC-CeEEEEEEEeCCCCCC-------------CCCcchhhcccCcEEE-EEEECCChhcHHHHHH
Q 028396 137 ---------INKTLMVQ-GARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVG 192 (209)
Q Consensus 137 ---------~~~~~~~~-~~~~~l~iwD~~G~e~-------------~~~~~~~~~~~ad~il-lvyDit~~~Sf~~l~~ 192 (209)
....+.+. .....+.||||+|... +..+...|++.+++++ +|+|.++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00000110 0125799999999653 3345667888888776 7999998766555545
Q ss_pred HHHHHHhHCCCCceEE
Q 028396 193 WYSEARKWNQGNKIEL 208 (209)
Q Consensus 193 wl~~i~~~~~~~vPii 208 (209)
|++.+.. .+.|++
T Consensus 184 ~~~~~~~---~~~~~i 196 (299)
T 2aka_B 184 IAKEVDP---QGQRTI 196 (299)
T ss_dssp HHHHHCT---TCSSEE
T ss_pred HHHHhCC---CCCeEE
Confidence 6665543 345554
No 169
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.19 E-value=5.3e-11 Score=105.86 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=68.7
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC---CCCc----------cccce-------------------eeeEEEEEeeCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QERS----------LQMAG-------------------LNLINKTLMVQG 145 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~---f~~~----------~~t~g-------------------~~~~~~~~~~~~ 145 (209)
...+||+++|..++|||||+++|+++. +.+. ..+++ +........++.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 446899999999999999999998654 1111 11211 111111112233
Q ss_pred eEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhH
Q 028396 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 146 ~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
....+.||||+|+++|......++..+|++|+|+|.++... ....+|+..+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~ 155 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL 155 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc
Confidence 44679999999999998888888999999999999998753 3344555555443
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.17 E-value=1.5e-11 Score=111.51 Aligned_cols=90 Identities=10% Similarity=0.094 Sum_probs=68.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~ill 177 (209)
+..+|+++|..++|||||++++.+..+. .+.+.+..+.....+..++ ..+.||||+|++.|..++..++..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 3579999999999999999999987665 3333333333223344444 358899999999999999999999999999
Q ss_pred EEECCC---hhcHHHH
Q 028396 178 MFDLTS---RCTLNSI 190 (209)
Q Consensus 178 vyDit~---~~Sf~~l 190 (209)
|||.++ +++++.+
T Consensus 81 VVda~~g~~~qT~e~l 96 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI 96 (501)
T ss_dssp EEETTTBSCTTTHHHH
T ss_pred EeecccCccHHHHHHH
Confidence 999998 4555443
No 171
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.17 E-value=4.3e-11 Score=110.57 Aligned_cols=105 Identities=10% Similarity=0.222 Sum_probs=73.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--CCC---------Cccc---cceeeeEEE--EEee---CCeEEEEEEEeCCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE---------RSLQ---MAGLNLINK--TLMV---QGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~--~f~---------~~~~---t~g~~~~~~--~~~~---~~~~~~l~iwD~~G~e~ 160 (209)
..+|+++|..++|||||+++++.. .+. +..+ ..|+++... .+.+ ++..+.++||||+|++.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 579999999999999999999752 111 1100 123332211 1212 56678999999999999
Q ss_pred CCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEE
Q 028396 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 161 ~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
|......+++.+|++|+|+|.++..+++....|..... .++|+|
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiI 129 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVII 129 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEE
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEE
Confidence 98888889999999999999999999999888876553 245654
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.2e-11 Score=114.74 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=64.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-----------------------------ccceeeeEEEEEeeCCeE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSL-----------------------------QMAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~-----------------------------~t~g~~~~~~~~~~~~~~ 147 (209)
...+||+++|..++|||||+++|++.... ... ...|+++......++...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 44789999999999999999999976432 110 011222222222333345
Q ss_pred EEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCCh
Q 028396 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 148 ~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~ 184 (209)
..+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 6799999999999988888899999999999999984
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.17 E-value=4.7e-11 Score=108.94 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=62.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCC----------------C---ccccceeeeEEEEEeeCCeEEEEEEEeCCC
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~--~f~----------------~---~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G 157 (209)
...+|+++|..++|||||+++++.. .+. + ...+.|.++......++...+.+++|||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3689999999999999999999853 110 0 011223333333333333457899999999
Q ss_pred CCCCCCcchhhcccCcEEEEEEECCChhc
Q 028396 158 DSRSFDHVPIACKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 158 ~e~~~~~~~~~~~~ad~illvyDit~~~S 186 (209)
++.|......+++.+|++|+|+|.++...
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 99999888889999999999999998754
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.16 E-value=1.1e-11 Score=111.16 Aligned_cols=87 Identities=9% Similarity=0.164 Sum_probs=62.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--CCCCc----------------------cc------cceeeeEEEEEeeCCeE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQERS----------------------LQ------MAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~--~f~~~----------------------~~------t~g~~~~~~~~~~~~~~ 147 (209)
...++|+++|..++|||||+++|++. .+.+. .+ ..|..+......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45789999999999999999999864 22210 00 01221111112233345
Q ss_pred EEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCCh
Q 028396 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 148 ~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~ 184 (209)
..+.||||+|+++|......++..+|++|+|+|.++.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 6799999999999988888899999999999999986
No 175
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.16 E-value=3.2e-11 Score=108.82 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=66.3
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC-------CC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC 169 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~-------f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~ 169 (209)
+..++|+++|..++|||||++++.+.. +. +..+.+..+.....+.+++ ..+.+|||+|+++|......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 568999999999999999999999876 22 2222222222223344454 6799999999999888888889
Q ss_pred ccCcEEEEEEECCC---hhcHHHHH
Q 028396 170 KDAVAILFMFDLTS---RCTLNSIV 191 (209)
Q Consensus 170 ~~ad~illvyDit~---~~Sf~~l~ 191 (209)
..+|++|+|+|.++ +++++.+.
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~ 119 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML 119 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH
Confidence 99999999999998 56665553
No 176
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.16 E-value=4.2e-11 Score=105.36 Aligned_cols=99 Identities=10% Similarity=0.121 Sum_probs=69.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC-------CCCCc--c------ccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN-------EQERS--L------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~-------~f~~~--~------~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~ 164 (209)
.+||+++|..++|||||+++|.+. .|..+ . ...|.++....+.++.....+.||||+|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 689999999999999999999863 12110 0 11233332223344444567899999999998877
Q ss_pred chhhcccCcEEEEEEECCChhcHHHHHHHHHHHHh
Q 028396 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 165 ~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~ 199 (209)
...+++.+|++|+|+|.++....+..+.| ..+..
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~ 116 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ 116 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH
Confidence 88889999999999999996554444333 44443
No 177
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.15 E-value=1.4e-10 Score=102.31 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=66.7
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--cceeeeEEEEEee-------------C--C----eEEEEEEE
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW 153 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~---~f~-~~~~--t~g~~~~~~~~~~-------------~--~----~~~~l~iw 153 (209)
..++|+++|..++|||||++++.+. .+. +..+ |+...+....+.. + + ....+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4689999999999999999999843 333 3333 5555554444322 1 1 13789999
Q ss_pred eCCCCCCCCCcchhhcccCcEEEEEEECCC----hhcHHHHHHH
Q 028396 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGW 193 (209)
Q Consensus 154 D~~G~e~~~~~~~~~~~~ad~illvyDit~----~~Sf~~l~~w 193 (209)
||+|++.|.......+..+|++|+|+|.++ +++++++..|
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 130 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL 130 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence 999999887666666778899999999995 5666666544
No 178
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.13 E-value=2.7e-10 Score=100.46 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=68.4
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--cceeeeEEEEEee-------------C--C----eEEEEE
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFS 151 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~---~f~-~~~~--t~g~~~~~~~~~~-------------~--~----~~~~l~ 151 (209)
....++|+++|..++|||||++++.+. .+. +..+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345799999999999999999999843 333 3233 5555554433322 1 1 137899
Q ss_pred EEeCCCCCCCCCcchhhcccCcEEEEEEECCC----hhcHHHHHHH
Q 028396 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGW 193 (209)
Q Consensus 152 iwD~~G~e~~~~~~~~~~~~ad~illvyDit~----~~Sf~~l~~w 193 (209)
||||+|++.|.......+..+|++|+|+|.++ +++++++..|
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 132 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence 99999999887666666778899999999995 4566665544
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.12 E-value=1.1e-10 Score=101.10 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=68.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccc---eeee----------------------------------------
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA---GLNL---------------------------------------- 136 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~---g~~~---------------------------------------- 136 (209)
.+|+|+|+.|+|||||++++.+..|. ....+. ....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 39999999999999999999998873 211111 0000
Q ss_pred ---------EEEEEee-CCeEEEEEEEeCCCCCCC-------------CCcchhhcccCcEEEEEEECCChhcHHHHHHH
Q 028396 137 ---------INKTLMV-QGARIAFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (209)
Q Consensus 137 ---------~~~~~~~-~~~~~~l~iwD~~G~e~~-------------~~~~~~~~~~ad~illvyDit~~~Sf~~l~~w 193 (209)
....+.+ ......+.+|||+|..++ ..+...|++++|++|+|+|.++.+... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 0001111 111235899999998886 456678899999999999887654432 356
Q ss_pred HHHHHhHCCCCceEE
Q 028396 194 YSEARKWNQGNKIEL 208 (209)
Q Consensus 194 l~~i~~~~~~~vPii 208 (209)
+..++...+.+.|+|
T Consensus 193 ~~l~~~~~~~~~~~i 207 (360)
T 3t34_A 193 IKISREVDPSGDRTF 207 (360)
T ss_dssp HHHHHHSCTTCTTEE
T ss_pred HHHHHHhcccCCCEE
Confidence 665555544445544
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.10 E-value=1.8e-10 Score=108.21 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=69.9
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC------------C-------ccccceeeeEEEEEeeCCeEEEEEEEeCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE------------R-------SLQMAGLNLINKTLMVQGARIAFSIWDVG 156 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~--~f~------------~-------~~~t~g~~~~~~~~~~~~~~~~l~iwD~~ 156 (209)
....+|+++|..++|||||+++++.. .+. + ...|+... ...+..+ .+.++||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEECc
Confidence 45789999999999999999999842 110 0 01122221 1222333 4789999999
Q ss_pred CCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHH
Q 028396 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 157 G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~ 195 (209)
|+..|...+..+++.+|++|+|+|.++..+++....|..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~ 124 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ 124 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH
Confidence 999999899999999999999999999999988877764
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.09 E-value=1e-10 Score=102.18 Aligned_cols=89 Identities=7% Similarity=0.024 Sum_probs=67.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEEC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDi 181 (209)
+|+++|..++|||||+++|. +...|+...+ ..+..+ ...+.||||+|+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~--~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITM--YNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEE--EEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeE--EEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 2222333332 233333 3569999999999997777778899999999999
Q ss_pred CChhcHHHHHHHHHHHHhHC
Q 028396 182 TSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 182 t~~~Sf~~l~~wl~~i~~~~ 201 (209)
+...+...++|+..+....
T Consensus 93 -~~g~~~qt~e~~~~~~~~~ 111 (370)
T 2elf_A 93 -PQGLDAHTGECIIALDLLG 111 (370)
T ss_dssp -TTCCCHHHHHHHHHHHHTT
T ss_pred -CCCCcHHHHHHHHHHHHcC
Confidence 4556777778877776544
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.05 E-value=3.4e-10 Score=106.28 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=70.5
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---cceeeeE--EEEEeeCCeEEEEEEEeCCCCC
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLNLI--NKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~--~~f~------------~~~~---t~g~~~~--~~~~~~~~~~~~l~iwD~~G~e 159 (209)
...+|+++|..++|||||+++++. +.+. ++.+ ..+..+. ...+..+ .+.++||||+|+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCCc
Confidence 368999999999999999999984 2221 0000 0111111 1223333 4679999999999
Q ss_pred CCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHh
Q 028396 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 160 ~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~ 199 (209)
.|......+++.+|++|+|+|.++..+++....|.. +.+
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~ 125 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT 125 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH
Confidence 999989999999999999999999988888777754 444
No 183
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.05 E-value=1.2e-10 Score=106.68 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=69.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC----Cccccc----eeeeEEE------------------E-------------
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE----RSLQMA----GLNLINK------------------T------------- 140 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~----~~~~t~----g~~~~~~------------------~------------- 140 (209)
..+|+|+|..|+|||||++++++.++. ...+++ ++..... .
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 579999999999999999999998762 222222 1100000 0
Q ss_pred -EeeCCe-EEEEEEEeCCCCCC-----------CCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhH
Q 028396 141 -LMVQGA-RIAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 141 -~~~~~~-~~~l~iwD~~G~e~-----------~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
+.+++. ...+.||||+|... |......++..+|++|+|+|.++....+....|++.+.+.
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 000000 02588999999875 3345566788999999999999877777888888877643
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=5e-10 Score=99.40 Aligned_cols=108 Identities=9% Similarity=0.131 Sum_probs=64.6
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc--------cccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC----
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---- 163 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~--------~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~---- 163 (209)
....++|+++|++|+|||||++.+++..+. .. .++++.+.....+..++....+++||++|...+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 344789999999999999999999988773 21 22333333333333345556899999999876421
Q ss_pred ---------------------cchhhcccCcEEEEEEECCCh-hcHHHHH-HHHHHHHhHCCCCceEE
Q 028396 164 ---------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARKWNQGNKIEL 208 (209)
Q Consensus 164 ---------------------~~~~~~~~ad~illvyDit~~-~Sf~~l~-~wl~~i~~~~~~~vPii 208 (209)
+...++.++++.+++|++... .+|+.+. .|+..+.. ++|+|
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~v~iI 171 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNII 171 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----TSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----cCcEE
Confidence 224456778887888888765 5777775 68887753 45554
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=6.5e-11 Score=100.53 Aligned_cols=86 Identities=10% Similarity=-0.038 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCC--CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChh-cHHHHH
Q 028396 115 SFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV 191 (209)
Q Consensus 115 SLi~rl~~~~f~--~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~-Sf~~l~ 191 (209)
+|+.+|+.+.|. ++.+|+|..+. ..+..++ ++++||+ |++|..+++.|++++|++|+|||+++++ +|+.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688999999996 56678895554 3333333 6899999 9999999999999999999999999998 899999
Q ss_pred HHHHHHHhHCCCCceEEc
Q 028396 192 GWYSEARKWNQGNKIELI 209 (209)
Q Consensus 192 ~wl~~i~~~~~~~vPiil 209 (209)
.|+.++.. .++|++|
T Consensus 106 ~~l~~~~~---~~~piil 120 (301)
T 1u0l_A 106 KFLVLAEK---NELETVM 120 (301)
T ss_dssp HHHHHHHH---TTCEEEE
T ss_pred HHHHHHHH---CCCCEEE
Confidence 99998865 3466654
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.03 E-value=2.6e-10 Score=107.13 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=70.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccccce--------eeeE--------------------------------
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG--------LNLI-------------------------------- 137 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~--~~~~t~g--------~~~~-------------------------------- 137 (209)
.++|+|+|++|+|||||++++.+.++. ...+++. .+..
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 689999999999999999999988754 3334331 0000
Q ss_pred -------------EEEEeeCCeE--EEEEEEeCCCCCC---CCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHh
Q 028396 138 -------------NKTLMVQGAR--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 138 -------------~~~~~~~~~~--~~l~iwD~~G~e~---~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~ 199 (209)
...+..+... ..+.||||+|... .......+++++|++|+|+|.++..++.+...|.+.+..
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~ 228 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG 228 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh
Confidence 0001111000 2589999999654 334566788999999999999999999888888766544
No 187
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.03 E-value=5.7e-10 Score=97.29 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=68.0
Q ss_pred CCCHHHH--HHHHhcCCCCC--------ccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEE
Q 028396 110 QIGKTSF--VVKYVGNEQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 110 ~vGKTSL--i~rl~~~~f~~--------~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvy 179 (209)
.+.|--| +.|+....+.. ..+|+|++.. .+.++ .+.+++|||+||+.++..|..||++++++||||
T Consensus 157 ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~--~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~ 232 (362)
T 1zcb_A 157 ESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEY--DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLV 232 (362)
T ss_dssp TTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEE--EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEE--EeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEE
Confidence 3445544 66777666652 2356787653 45555 478999999999999999999999999999999
Q ss_pred ECCC----------hhcHHHHHHHHHHHHhHC-CCCceEEc
Q 028396 180 DLTS----------RCTLNSIVGWYSEARKWN-QGNKIELI 209 (209)
Q Consensus 180 Dit~----------~~Sf~~l~~wl~~i~~~~-~~~vPiil 209 (209)
|+++ .++|++...|++.+.... ..++|+||
T Consensus 233 dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piIL 273 (362)
T 1zcb_A 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 273 (362)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred ECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEE
Confidence 9999 789999999999987642 35788875
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.02 E-value=1.3e-10 Score=113.46 Aligned_cols=103 Identities=9% Similarity=0.090 Sum_probs=71.2
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcC-------CCCC--------ccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGN-------EQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~-------~f~~--------~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~ 161 (209)
....+||+++|..++|||||+++|.+. .|.. ...+.|+++....+.++.....+.||||+|+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 345799999999999999999999863 1110 1123444444334445555678999999999999
Q ss_pred CCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhH
Q 028396 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 162 ~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
......+++.+|++|+|+|.++.... ...+|+..+...
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l 410 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV 410 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc
Confidence 88888889999999999999987543 344566666554
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.02 E-value=4e-10 Score=105.39 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=74.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC--------------Cccc---cceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~--------------~~~~---t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~ 162 (209)
..+|+++|..|+|||||++++.+.... +..+ ..++.+......+....+.+++|||+|++.|.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 579999999999999999999843321 1100 12334444444444446789999999999998
Q ss_pred CcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhHCCCCceEE
Q 028396 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGNKIEL 208 (209)
Q Consensus 163 ~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~~~~vPii 208 (209)
.....+++.+|++++|+|.++..+.+.. .|+..+... ++|+|
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~---~ip~i 130 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---GLPRM 130 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEE
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc---cCCEE
Confidence 8888999999999999999887654443 555555543 35554
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.01 E-value=3.3e-10 Score=95.72 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f 125 (209)
....+|+|+|++|+|||||++++++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3457999999999999999999999887
No 191
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.00 E-value=9.6e-10 Score=103.41 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=69.4
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---cceeeeEE--EEEee-----CCeEEEEEEEe
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLIN--KTLMV-----QGARIAFSIWD 154 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~--~f~------------~~~~---t~g~~~~~--~~~~~-----~~~~~~l~iwD 154 (209)
...+|+++|..++|||||+.+++.. .+. +..+ ..|..+.. ..+.+ ++..+.++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3679999999999999999999742 111 1100 11222211 12222 23448899999
Q ss_pred CCCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHH
Q 028396 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194 (209)
Q Consensus 155 ~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl 194 (209)
|+|++.|......+++.+|++|+|+|.++..+.+....|.
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~ 128 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH
Confidence 9999999888899999999999999999988777666663
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=3.3e-10 Score=96.27 Aligned_cols=76 Identities=11% Similarity=0.185 Sum_probs=41.5
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC-CCC-Ccc--------ccceeeeEEEEEeeCCeEEEEEEEeCCCC-------CC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR 160 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~-~f~-~~~--------~t~g~~~~~~~~~~~~~~~~l~iwD~~G~-------e~ 160 (209)
...+||+++|+.|+|||||++++.+. .++ ... ++.+.+.....+..++....+++||++|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44799999999999999999998765 554 221 22233333333344556689999999998 66
Q ss_pred CCCcch-------hhcccCc
Q 028396 161 SFDHVP-------IACKDAV 173 (209)
Q Consensus 161 ~~~~~~-------~~~~~ad 173 (209)
+..+.. .++++.+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~s 115 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDES 115 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 666665 5655543
No 193
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.94 E-value=2.2e-09 Score=93.74 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=55.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEeeCC-------------------eEEEEEEEeCCCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQG-------------------ARIAFSIWDVGGD 158 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~--t~g~~~~~~~~~~~~-------------------~~~~l~iwD~~G~ 158 (209)
+||.++|.+|||||||++++.+.... ..++ |+..+.. ...+++ ....+++||++|+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 68999999999999999999876532 2222 2222211 112221 2357999999999
Q ss_pred CCCC----Ccch---hhcccCcEEEEEEECCC
Q 028396 159 SRSF----DHVP---IACKDAVAILFMFDLTS 183 (209)
Q Consensus 159 e~~~----~~~~---~~~~~ad~illvyDit~ 183 (209)
.+.. .+.. .+++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 8753 2322 35789999999999987
No 194
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.86 E-value=5.7e-10 Score=103.04 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=46.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CC-CccccceeeeEEEEEeeCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------------------------------QE-RSLQMAGLNLINKTLMVQG 145 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~-------------------------------f~-~~~~t~g~~~~~~~~~~~~ 145 (209)
...++|+++|..++|||||+++|+... +. +..+.+..+..... +..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EEe
Confidence 346799999999999999999996421 00 00111222222222 233
Q ss_pred eEEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCCh
Q 028396 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 146 ~~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~ 184 (209)
....+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 346789999999999988888899999999999999864
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.84 E-value=6.6e-09 Score=92.10 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=68.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC----CCCcchhhc---ccC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDA 172 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~----~~~~~~~~~---~~a 172 (209)
..|.++|++|+|||||++.+.+.... ..++.+........+.+++ ...+.+||++|... +..+...++ ..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 46899999999999999999987543 3222221222222344443 34688999999743 233333333 468
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHhHC
Q 028396 173 VAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 173 d~illvyDit~~~Sf~~l~~wl~~i~~~~ 201 (209)
+.++.++|++ +++++++..|.+++....
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la 264 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYD 264 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHC
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHh
Confidence 9999999999 788999999988887654
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.83 E-value=2e-09 Score=93.04 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=25.6
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE 126 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~ 126 (209)
....+|+|+|+++||||||++++.+.+|.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34579999999999999999999998873
No 197
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=6.5e-08 Score=85.10 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=60.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEeeCCe---------------EEEEEEEeCCCCCC--
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR-- 160 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f-~-~~~~t~g~~~~~~~~~~~~~---------------~~~l~iwD~~G~e~-- 160 (209)
..++.++|.+|||||||++.+.+... . ..++.+..+.....+.+++. ...+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 57999999999999999999999776 4 45554444444445555542 14689999999543
Q ss_pred -----CCCcchhhcccCcEEEEEEECCC
Q 028396 161 -----SFDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 161 -----~~~~~~~~~~~ad~illvyDit~ 183 (209)
+.......++.+|+++.|+|..+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234456689999999999875
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.4e-07 Score=82.45 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=61.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEeeCCeEEEEEEEeCCCCCCC----CCcc---hhhccc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHV---PIACKD 171 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~----~~~~---~~~~~~ 171 (209)
..+|.+||.++||||||+|++.+.... ..++.+..+-....+.+++. ++++.||+|--.- ..+. -...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 468999999999999999999987655 55554444444556677764 5789999995432 1111 234578
Q ss_pred CcEEEEEEECCChh
Q 028396 172 AVAILFMFDLTSRC 185 (209)
Q Consensus 172 ad~illvyDit~~~ 185 (209)
+|++++|.|.+++.
T Consensus 150 ad~il~vvD~~~p~ 163 (376)
T 4a9a_A 150 CNLLFIILDVNKPL 163 (376)
T ss_dssp CSEEEEEEETTSHH
T ss_pred cCccccccccCccH
Confidence 99999999999873
No 199
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.28 E-value=3.5e-07 Score=76.06 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=36.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~ 160 (209)
++++++|.+|||||||++++.+.......++.|.+.....+.++. .+++|||+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 799999999999999999999877654444445444333343332 578999999664
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.25 E-value=2.1e-08 Score=80.23 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=30.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeE
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI 137 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~t~g~~~~ 137 (209)
..||+++|++|||||||+++|+...+. .+.++++.++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 479999999999999999999988766 44556665543
No 201
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.16 E-value=4.7e-08 Score=87.60 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=66.9
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC--CCCcc--------hhh
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHV--------PIA 168 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~--~~~~~--------~~~ 168 (209)
...+|+++|.+|+||||+.+++...-.....++.+++.........+.....++||..|++. ....+ ..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999987543222233333221111111112223457899998732 23332 556
Q ss_pred cccCcEEEEEEECCChhcHHHHHHHHHHHHhHC
Q 028396 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 169 ~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~~ 201 (209)
+..+++.++|+|.++. +++..+.|++.+++..
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 7678899999999998 7788888988877653
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.11 E-value=1.6e-06 Score=68.99 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=21.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..+|+++|.+|||||||++++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 203
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.07 E-value=6e-06 Score=75.48 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=68.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC------------------CCCCccc---cceeeeEEEEEeeCCeEEEEEEEeCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN------------------EQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~------------------~f~~~~~---t~g~~~~~~~~~~~~~~~~l~iwD~~G~ 158 (209)
.-+|.++|-.++|||||..+++.. .+.++.+ .-|+.+.+....+.-..+.++|.||+|+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 468999999999999999998521 1111111 1234433333333334478999999999
Q ss_pred CCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhH
Q 028396 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 159 e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
..|..-....++-+|++|+|+|..+.-.-+...-| ..+.++
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~ 151 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR 151 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh
Confidence 99999888899999999999999998776666667 344443
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.05 E-value=3.4e-06 Score=70.81 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=36.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~ 160 (209)
..++++++|.+|||||||+|++.+.......+..|.+.....+.++. .+.+|||+|-..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 36899999999999999999999876432222223222222233332 478999999653
No 205
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.91 E-value=8.3e-06 Score=70.37 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..+|+++|.+|||||||++++..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999863
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.87 E-value=1.7e-06 Score=74.77 Aligned_cols=38 Identities=5% Similarity=0.003 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhcHH
Q 028396 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 188 (209)
Q Consensus 148 ~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~ 188 (209)
+.+.|+||+|-.. ........+|.+++|+|.++....+
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~ 204 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQ 204 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC------
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHH
Confidence 5678999999532 1244567899999999998765433
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.81 E-value=6.2e-05 Score=71.23 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=25.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~~~~f 125 (209)
.....+|+|+|+.++|||||++.+++..+
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 44567999999999999999999999877
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.72 E-value=2.7e-05 Score=63.36 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHh
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
.....+++.|.+||||||+++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 346789999999999999999997
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.64 E-value=1.8e-05 Score=73.48 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=69.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CCC------C------Cccc---cceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG--NEQ------E------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 163 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~--~~f------~------~~~~---t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~~~~ 163 (209)
-+|.++|-.++|||||..+++. +.. . ++.+ .-|+.+.+....+.-....++|.||+|+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3688999999999999999862 111 0 1111 114444444444444557799999999999998
Q ss_pred cchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhH
Q 028396 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 164 ~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
-....++-+|++|+|+|..+.-.-+...-|. .+.+.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~ 118 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM 118 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc
Confidence 8888999999999999999875544444553 34443
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.59 E-value=0.00022 Score=66.97 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=66.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC--------CC------CCccc---cceeeeEEEEEee--C-----CeEEEEEEEeC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN--------EQ------ERSLQ---MAGLNLINKTLMV--Q-----GARIAFSIWDV 155 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~--------~f------~~~~~---t~g~~~~~~~~~~--~-----~~~~~l~iwD~ 155 (209)
.-+|.++|-.+.|||||..+++.. +. .++.+ .-|+.+.+..+.+ . ...+.+++.||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 458999999999999999988621 11 11111 1133333332222 2 23688999999
Q ss_pred CCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHH
Q 028396 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 156 ~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~ 198 (209)
+|+-.|..-....++-+|++|+|+|..+.-.-+...-|....+
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~ 135 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK 135 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH
Confidence 9999999888889999999999999998766666556654443
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.58 E-value=1.4e-05 Score=68.61 Aligned_cols=37 Identities=8% Similarity=-0.101 Sum_probs=24.9
Q ss_pred EEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhc
Q 028396 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 147 ~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~S 186 (209)
.+.+.||||+|..... ......+|++++|+|.++.+.
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC-----
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHH
Confidence 3578999999965432 235689999999999876544
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.55 E-value=0.00015 Score=61.20 Aligned_cols=43 Identities=5% Similarity=-0.130 Sum_probs=39.3
Q ss_pred CCCCCCCcchhhcccCcEEEEEEECCChh-cHHHHHHHHHHHHh
Q 028396 157 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARK 199 (209)
Q Consensus 157 G~e~~~~~~~~~~~~ad~illvyDit~~~-Sf~~l~~wl~~i~~ 199 (209)
.++++..+.+.+++++|++++|||++++. +|+.+..|+..+..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~ 108 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY 108 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 38899999999999999999999999996 99999999998765
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.45 E-value=0.00021 Score=61.98 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=36.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC-----CCCCccccceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN-----EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~-----~f~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e 159 (209)
..+++++|.+|||||||+|.+.+. .........|.+.....+.++.. +.+.||+|-.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~ 223 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGII 223 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcC
Confidence 457999999999999999999975 22211111222222334444432 7899999954
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.45 E-value=4.4e-05 Score=61.74 Aligned_cols=55 Identities=7% Similarity=0.106 Sum_probs=33.6
Q ss_pred eCCCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHh---HC--CCCceEEc
Q 028396 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK---WN--QGNKIELI 209 (209)
Q Consensus 154 D~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~---~~--~~~vPiil 209 (209)
|.+||+.++.+|+.||.++|++|||.|.+|++.++ .+.-+.++.. .. -.++|++|
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLV 167 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLV 167 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEE
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEE
Confidence 35699999999999999999999999999997655 4444433322 11 14678875
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.26 E-value=0.00021 Score=61.32 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
...+.++|.+|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999997
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.22 E-value=0.0005 Score=59.61 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=36.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQ------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f------~~~~~t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~ 160 (209)
..+++++|.+|||||||+|++.+... .......|.+.....+.+++. +.++||+|-..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~ 223 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIIN 223 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCc
Confidence 35899999999999999999987521 111122233333334444433 78999999643
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.16 E-value=0.0018 Score=57.32 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=35.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeE--EEEEeeCCeEEEEEEEeCCCCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLI--NKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~--t~g~~~~--~~~~~~~~~~~~l~iwD~~G~e 159 (209)
.+++.++|+.|+|||||++.+.+..+. .... +.+.... .......+....+.++|+.|-.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 456999999999999999999987543 1111 1111111 1112222333478899988754
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.15 E-value=0.00039 Score=64.01 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=39.4
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-----cceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-----MAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~~f~-~~~~-----t~g~~~~~~~~~~~~~~~~l~iwD~~G~e~ 160 (209)
.....|+|+|.++||||||+|++.+.... .... |.|+......+. ......+.++||+|-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCc
Confidence 34688999999999999999999987632 2111 233322111111 12234688999999653
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.00034 Score=59.16 Aligned_cols=34 Identities=6% Similarity=0.186 Sum_probs=29.3
Q ss_pred CCCCCCCCCcchhhcccCcEEEEEEECCChhcHH
Q 028396 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 188 (209)
Q Consensus 155 ~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~ 188 (209)
.+||+.++.+|+.||.++|++|+|.|.+|++.++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle 227 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE 227 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH
Confidence 5799999999999999999999999999998765
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.88 E-value=0.00059 Score=56.66 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+++.++|+.|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999999998643
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.77 E-value=0.0014 Score=59.15 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=50.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh------cCCCC--Cc--c-c-----------cceeeeEEEEEe-------------eC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV------GNEQE--RS--L-Q-----------MAGLNLINKTLM-------------VQ 144 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~------~~~f~--~~--~-~-----------t~g~~~~~~~~~-------------~~ 144 (209)
...|+++|.+||||||+++++. +.+.. .. . + ..+++++..... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998 33211 00 0 0 011222211000 00
Q ss_pred CeEEEEEEEeCCCCCCCCC-cchh---h--cccCcEEEEEEECCChhc
Q 028396 145 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 145 ~~~~~l~iwD~~G~e~~~~-~~~~---~--~~~ad~illvyDit~~~S 186 (209)
...+.+.|+||+|...... +... . +..+|.+++|.|.+....
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~ 228 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA 228 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence 0235789999999765322 1111 1 237899999999987644
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.003 Score=48.66 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.++++|++|+|||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998753
No 223
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.08 E-value=0.0035 Score=48.61 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
++.++|+.|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.01 E-value=0.0036 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 225
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.93 E-value=0.008 Score=53.49 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=42.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhcC------------------CCC-C---ccccceeeeEEEEEee---CCeEEEEEE
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVGN------------------EQE-R---SLQMAGLNLINKTLMV---QGARIAFSI 152 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~~------------------~f~-~---~~~t~g~~~~~~~~~~---~~~~~~l~i 152 (209)
..-.-|.|+|..++|||+|+|++++. .|. . ...|.|+-.....+.. ++....+-+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34567889999999999999999852 333 1 1124455433222211 455788999
Q ss_pred EeCCCCCCC
Q 028396 153 WDVGGDSRS 161 (209)
Q Consensus 153 wD~~G~e~~ 161 (209)
.||.|....
T Consensus 145 lDTeG~~~~ 153 (447)
T 3q5d_A 145 MDTQGTFDS 153 (447)
T ss_dssp EEEECCCSS
T ss_pred EcCCccccc
Confidence 999996543
No 226
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.91 E-value=0.0054 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|++|+|||||++.+.+-.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999743
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.80 E-value=0.0054 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028396 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~~ 123 (209)
|+++|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999743
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.71 E-value=0.0056 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028396 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~ 122 (209)
++++|+.|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999874
No 229
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.67 E-value=0.0061 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-+.++|+.|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998753
No 230
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.62 E-value=0.0066 Score=46.56 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.++++|.+|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999764
No 231
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.60 E-value=0.0061 Score=46.54 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q 028396 102 KISLLGDCQIGKTSFVVKY 120 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl 120 (209)
-+.++|++|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999954
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.60 E-value=0.0079 Score=47.69 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.--|+++|++|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 446899999999999999998853
No 233
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.56 E-value=0.0069 Score=48.56 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.--++++|++|+|||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346889999999999999998764
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.53 E-value=0.0072 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
--|+++|++|+||||+++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999854
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.46 E-value=0.0079 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-+.++|+.|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999988754
No 236
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.43 E-value=0.0081 Score=47.81 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999988753
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.33 E-value=0.0094 Score=46.61 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|+++|.+|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.23 E-value=0.011 Score=44.33 Aligned_cols=21 Identities=24% Similarity=0.048 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.19 E-value=0.012 Score=43.87 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q 028396 102 KISLLGDCQIGKTSFVVKY 120 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl 120 (209)
-|++.|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 240
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.19 E-value=0.015 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.....|++.|.+|+||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3356899999999999999998764
No 241
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.18 E-value=0.011 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999988654
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.15 E-value=0.011 Score=46.45 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|.++|++|+|||||++.+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987753
No 243
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.15 E-value=0.015 Score=43.86 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.13 E-value=0.012 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
..++++|.+|+||||+++.+.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999987643
No 245
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.07 E-value=0.013 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988653
No 246
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.98 E-value=0.014 Score=43.90 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 247
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.98 E-value=0.014 Score=44.83 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999874
No 248
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.93 E-value=0.012 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.++++|++|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999887643
No 249
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.93 E-value=0.017 Score=43.89 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988754
No 250
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.92 E-value=0.015 Score=45.60 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
++.++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999998775
No 251
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.84 E-value=0.017 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 252
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.016 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.--|+++|.+|+||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998753
No 253
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.83 E-value=0.017 Score=45.94 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028396 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~ 121 (209)
-+.++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999877
No 254
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.82 E-value=0.018 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028396 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~ 121 (209)
-.|+++|++|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999988
No 255
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.81 E-value=0.018 Score=45.07 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
+|++.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.79 E-value=0.025 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
...|+++|.+||||||++..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4689999999999999998886
No 257
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.79 E-value=0.018 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.76 E-value=0.017 Score=44.91 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.75 E-value=0.017 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988865
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.75 E-value=0.017 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f 125 (209)
-.++++|.+|||||||++.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999999997654
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.73 E-value=0.019 Score=43.69 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.72 E-value=0.019 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.|+++|.+|+||||+...+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998763
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.66 E-value=0.022 Score=42.98 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|++.|.+|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998875
No 264
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.65 E-value=0.017 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
--+.++|++|+|||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999863
No 265
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.64 E-value=0.019 Score=44.37 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-++++|.+|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 266
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.61 E-value=0.057 Score=48.10 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=41.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHH---h---------------cCCCC-C---ccccceeeeEEEEEee---CCeEEEEEEEe
Q 028396 100 SLKISLLGDCQIGKTSFVVKY---V---------------GNEQE-R---SLQMAGLNLINKTLMV---QGARIAFSIWD 154 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl---~---------------~~~f~-~---~~~t~g~~~~~~~~~~---~~~~~~l~iwD 154 (209)
-.=|.|+|..++|||.|++.+ . ...|. . ...|.|+......+.+ ++....+-+.|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 345569999999999999954 3 23444 1 2226677765443322 66778999999
Q ss_pred CCCCCCC
Q 028396 155 VGGDSRS 161 (209)
Q Consensus 155 ~~G~e~~ 161 (209)
|.|....
T Consensus 147 TEG~~d~ 153 (457)
T 4ido_A 147 TQGTFDS 153 (457)
T ss_dssp ECCBTCT
T ss_pred ccCCCCc
Confidence 9996543
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.56 E-value=0.026 Score=42.57 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999988753
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.55 E-value=0.025 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|.+|+||||+...+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988753
No 269
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.55 E-value=0.027 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|+++|.+|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.52 E-value=0.019 Score=45.96 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988765
No 271
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.51 E-value=0.021 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+|.++|..|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998875
No 272
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.48 E-value=0.023 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988653
No 273
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.47 E-value=0.02 Score=47.01 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.++++|+.|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998875
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.46 E-value=0.023 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|.++|+.|+|||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998765
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.46 E-value=0.028 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|.+|+||||+...+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.40 E-value=0.026 Score=42.98 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.39 E-value=0.023 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 278
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.37 E-value=0.018 Score=43.26 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.+++.|++|+|||+++..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999887643
No 279
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.35 E-value=0.025 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998865
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.35 E-value=0.024 Score=44.08 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=19.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|+++|.+|+||||+.+.+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999887653
No 281
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.34 E-value=0.027 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998763
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.33 E-value=0.015 Score=46.25 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=15.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028396 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~ 121 (209)
--+.++|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999998
No 283
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.32 E-value=0.026 Score=45.63 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998865
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.32 E-value=0.026 Score=45.69 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998865
No 285
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.31 E-value=0.027 Score=44.29 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+|.++|.+|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 286
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.30 E-value=0.026 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999988653
No 287
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.30 E-value=0.025 Score=46.98 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998865
No 288
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.29 E-value=0.039 Score=42.67 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028396 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~ 121 (209)
..|++.|.+|+||||+...+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998886
No 289
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.28 E-value=0.023 Score=47.53 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNEQE 126 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~f~ 126 (209)
--+.++|++|+|||||++.+.+..-+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 36789999999999999999876443
No 290
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.27 E-value=0.026 Score=45.01 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
...-|.+.|..|+||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3567999999999999999988754
No 291
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.26 E-value=0.025 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 292
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.25 E-value=0.026 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.-+.++|++|+|||||++.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 468999999999999999998 54
No 293
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.19 E-value=0.029 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-++++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999873
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.18 E-value=0.029 Score=44.07 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 295
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.18 E-value=0.028 Score=45.18 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998865
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.15 E-value=0.028 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988653
No 297
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.14 E-value=0.028 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-.+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 298
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.14 E-value=0.034 Score=44.90 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..+|++.|.+|+||||+..++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 299
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.13 E-value=0.028 Score=46.30 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999998865
No 300
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.12 E-value=0.028 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 301
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.11 E-value=0.029 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998865
No 302
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.10 E-value=0.03 Score=46.08 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 303
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.10 E-value=0.032 Score=42.96 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
...|++.|.+|+||||+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 304
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.10 E-value=0.03 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 305
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.09 E-value=0.034 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|+++|.+|+||||+...+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988754
No 306
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.09 E-value=0.024 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.-|+.++|+.|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999987653
No 307
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.08 E-value=0.034 Score=44.12 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|+++|++|+||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999888764
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.07 E-value=0.029 Score=47.38 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.+.++|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4789999999999999998763
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.05 E-value=0.029 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988653
No 310
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.03 E-value=0.03 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998865
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.02 E-value=0.03 Score=45.03 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028396 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~~ 123 (209)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988753
No 312
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.02 E-value=0.033 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHh
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
....||+++|.+++|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 447899999999999999998863
No 313
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.02 E-value=0.03 Score=43.39 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-+++.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 314
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.01 E-value=0.032 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6789999999999999998864
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.01 E-value=0.038 Score=42.91 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
+.|.++|..|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 316
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.00 E-value=0.031 Score=42.86 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028396 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~ 122 (209)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998874
No 317
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.97 E-value=0.034 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988653
No 318
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.96 E-value=0.01 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-.++++|.+|||||||++.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998754
No 319
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.95 E-value=0.034 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.94 E-value=0.034 Score=42.07 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
+|+++|.+|+||||+...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999888753
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.89 E-value=0.024 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998865
No 322
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.87 E-value=0.017 Score=44.57 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+.++|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998874
No 323
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.86 E-value=0.033 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 324
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.86 E-value=0.046 Score=41.46 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
...|++.|.+|+||||+...+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3469999999999999999886
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.86 E-value=0.043 Score=42.06 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
...|+++|.+|+||||+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988654
No 326
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.84 E-value=0.034 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998865
No 327
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.80 E-value=0.038 Score=42.97 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999986
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.80 E-value=0.051 Score=41.47 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|+++|.+|+||||+...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999988753
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.80 E-value=0.042 Score=41.01 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.76 E-value=0.037 Score=42.31 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.71 E-value=0.04 Score=45.35 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999988764
No 332
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.69 E-value=0.052 Score=42.05 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 333
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.69 E-value=0.015 Score=45.26 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 334
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.68 E-value=0.037 Score=43.60 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988753
No 335
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.68 E-value=0.044 Score=43.44 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 336
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.68 E-value=0.036 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028396 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~ 121 (209)
--+.++|+.|+||||++..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 478899999999999999886
No 337
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.67 E-value=0.041 Score=43.44 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-+.++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999863
No 338
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.66 E-value=0.025 Score=42.32 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
--+.++|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988753
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.62 E-value=0.038 Score=46.65 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|.++|+.|+|||||++.+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 56789999999999999998764
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.61 E-value=0.046 Score=42.51 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
...|.++|.+|+||||+.+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998764
No 341
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.59 E-value=0.041 Score=42.50 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988764
No 342
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.56 E-value=0.047 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|++.|.+|+||||+...+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.56 E-value=0.054 Score=41.03 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|++.|.+|+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988764
No 344
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.56 E-value=0.047 Score=43.50 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+...+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988763
No 345
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.55 E-value=0.045 Score=42.45 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.54 E-value=0.046 Score=41.54 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 347
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.54 E-value=0.047 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+.|.+.|.+|+||||+...+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988754
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.52 E-value=0.04 Score=45.41 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028396 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~ 122 (209)
++++|++|+|||+|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999998875
No 349
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.49 E-value=0.048 Score=42.02 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-+.++|.+|+|||||+.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 350
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.47 E-value=0.044 Score=41.81 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|++.|.+|+||||+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988763
No 351
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.46 E-value=0.042 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.--+.++|+.|+||||++..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998764
No 352
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.43 E-value=0.041 Score=47.37 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.++++|+.|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998874
No 353
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.39 E-value=0.044 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028396 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~~ 123 (209)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999988753
No 354
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.39 E-value=0.04 Score=45.45 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 355
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.37 E-value=0.046 Score=44.45 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-|+++|.+|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.36 E-value=0.051 Score=41.59 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|.+|+||||+...+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.35 E-value=0.051 Score=40.67 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988764
No 358
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.35 E-value=0.05 Score=42.85 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+...+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988753
No 359
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.34 E-value=0.046 Score=43.98 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999998864
No 360
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.32 E-value=0.045 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.--+.++|+.|+||||++..+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 361
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.29 E-value=0.045 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~f 125 (209)
-+.++|+.|+|||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999987643
No 362
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.25 E-value=0.047 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998765
No 363
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.23 E-value=0.047 Score=46.12 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999988753
No 364
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.22 E-value=0.049 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|.++|+.|+|||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998865
No 365
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.19 E-value=0.035 Score=46.80 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.+.++|+.|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999888754
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.16 E-value=0.052 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998654
No 367
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.15 E-value=0.068 Score=39.31 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35999999999999998776643
No 368
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.11 E-value=0.059 Score=41.34 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
...|.+.|..|+||||+.+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999999988764
No 369
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.11 E-value=0.055 Score=41.02 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.+++|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.11 E-value=0.056 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|++.|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 371
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.11 E-value=0.05 Score=42.33 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|.++|..|+|||||++.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988763
No 372
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.10 E-value=0.055 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.09 E-value=0.038 Score=41.81 Aligned_cols=23 Identities=26% Similarity=0.158 Sum_probs=15.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998863
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.08 E-value=0.049 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.++++|+.|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 375
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.08 E-value=0.055 Score=41.07 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|.+|+||||+...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888754
No 376
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.06 E-value=0.055 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998654
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.05 E-value=0.05 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.++++|+.|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999864
No 378
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.00 E-value=0.056 Score=42.70 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888753
No 379
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.97 E-value=0.059 Score=46.91 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998754
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.96 E-value=0.07 Score=44.49 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
...|.++|.+|+|||||++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999988654
No 381
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.96 E-value=0.058 Score=46.73 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998664
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.96 E-value=0.058 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|+++|.+|+||||+...+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998754
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.94 E-value=0.062 Score=40.74 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|+++|..|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988865
No 384
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.93 E-value=0.1 Score=38.30 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999888754
No 385
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.90 E-value=0.06 Score=43.07 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
--+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 386
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.90 E-value=0.061 Score=46.61 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999988654
No 387
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.89 E-value=0.21 Score=43.60 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..-|+++|.+|+||||+.+++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998753
No 388
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.88 E-value=0.058 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-+++.|+.|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 389
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.85 E-value=0.058 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999998743
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.84 E-value=0.061 Score=43.05 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.1
Q ss_pred eeeE-EEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKI-SLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KI-vvvGd~~vGKTSLi~rl~~ 122 (209)
..|| +++|++|+||+|...++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 3454 5689999999999888763
No 391
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.72 E-value=0.067 Score=46.30 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999888653
No 392
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.71 E-value=0.058 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
--+++.|++|+|||+|++.+.+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 393
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.66 E-value=0.058 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-++|.|+.|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999998753
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.64 E-value=0.068 Score=41.79 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988753
No 395
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.63 E-value=0.068 Score=42.81 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|++.|.+|+||||++.++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998764
No 396
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.62 E-value=0.064 Score=43.98 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..+++.|++|+|||++++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.59 E-value=0.055 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.++++|+.|+|||||++.+.+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998864
No 398
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.59 E-value=0.065 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.--+.++|+.|+||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45788999999999999998764
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.59 E-value=0.082 Score=41.38 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|++.|..|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 400
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.57 E-value=0.08 Score=42.87 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
...|.++|+.|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 401
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.54 E-value=0.065 Score=47.15 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-++++|+.|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 402
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.53 E-value=0.063 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|.++|..|+|||||++.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998765
No 403
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.48 E-value=0.051 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999998654
No 404
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.45 E-value=0.073 Score=43.54 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988764
No 405
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.45 E-value=0.096 Score=43.03 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=18.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028396 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~ 121 (209)
..+++.|++|+|||++++.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999997554
No 406
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.43 E-value=0.056 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNEQE 126 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~f~ 126 (209)
.++++|+.|+|||||++.+.+-.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999976433
No 407
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.40 E-value=0.07 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
--+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998874
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.37 E-value=0.054 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-++++|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999965
No 409
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.35 E-value=0.072 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.--+.++|..|+|||||+..+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45688999999999999998763
No 410
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.34 E-value=0.074 Score=43.52 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
--++++|++|+|||+|+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999998874
No 411
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.33 E-value=0.072 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999988864
No 412
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.26 E-value=0.078 Score=45.02 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
.+=|.++|++|+|||||++.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999998874
No 413
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.26 E-value=0.077 Score=44.80 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-+++.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.26 E-value=0.076 Score=45.49 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
=++.++|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 488999999999999999998764
No 415
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.10 E-value=0.078 Score=47.84 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..++++|+.|+|||||++.+.+-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999998854
No 416
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=92.07 E-value=0.096 Score=45.87 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.9
Q ss_pred CceeeeEEEEcCCCCCHHHHHHHHh
Q 028396 97 DLVSLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 97 ~~~~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
....+|++++|.+.+||||+++++.
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3558999999999999999999764
No 417
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.05 E-value=0.079 Score=43.94 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-+++.|++|+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4577779999999999998764
No 418
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.01 E-value=0.11 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|++.|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999885
No 419
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.99 E-value=0.088 Score=42.72 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...+++.|++|+|||+++..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998875
No 420
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.94 E-value=0.1 Score=39.00 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.|++.|.+|+||||+...+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999988754
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.89 E-value=0.091 Score=42.89 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-.|+++|.+|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988753
No 422
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.83 E-value=0.052 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988654
No 423
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.75 E-value=0.081 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 424
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.73 E-value=0.095 Score=43.50 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
--+++.|++|+|||+|++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999988753
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.73 E-value=0.12 Score=38.56 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028396 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~ 121 (209)
.+++|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999998864
No 426
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.68 E-value=0.11 Score=40.94 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028396 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~ 121 (209)
=+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999998875
No 427
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.66 E-value=0.11 Score=41.38 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
...|+++|++|+|||+|...+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999854
No 428
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.087 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 37899999999999999988764
No 429
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.63 E-value=0.1 Score=42.87 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999988764
No 430
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.56 E-value=0.084 Score=44.27 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028396 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~ 122 (209)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 431
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.49 E-value=0.097 Score=43.72 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028396 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~ 121 (209)
-.++++|..|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999998875
No 432
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.43 E-value=0.13 Score=41.68 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
.+.|.+.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999876
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.43 E-value=0.1 Score=46.08 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
=++.++|+.|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999888653
No 434
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.43 E-value=0.11 Score=43.40 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028396 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~~ 123 (209)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999987643
No 435
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.40 E-value=0.11 Score=43.78 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028396 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~~ 123 (209)
+++.|++|+|||+++..+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988653
No 436
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.33 E-value=0.1 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.+++.|++|+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 437
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.32 E-value=0.079 Score=42.94 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|+|.|..|+||||+++.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988764
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.25 E-value=0.14 Score=40.81 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=21.2
Q ss_pred ceeeeEEEEcCCCCCHHHHHHHHhc
Q 028396 98 LVSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 98 ~~~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.....|.++|..|+||||+...+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999988764
No 439
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.17 E-value=0.11 Score=43.88 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-+++.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 440
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.14 E-value=0.13 Score=42.37 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
.+.|++.|.+|+||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998876
No 441
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.05 E-value=0.097 Score=41.86 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+++.|++|+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887764
No 442
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.00 E-value=0.13 Score=43.01 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+++.|++|+|||+|++.+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 443
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.89 E-value=0.22 Score=40.06 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..+++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999999999988754
No 444
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.88 E-value=0.15 Score=43.67 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-|+++|+.|+|||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 445
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.86 E-value=0.12 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-.++++|++|+|||+++..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 446
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.85 E-value=0.13 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999998753
No 447
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.85 E-value=0.14 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
.--++++|.+|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468899999999999999876
No 448
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.79 E-value=0.13 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...+++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999998864
No 449
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.77 E-value=0.13 Score=46.88 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-++.++|+.|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 37899999999999999998764
No 450
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.77 E-value=0.17 Score=40.96 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
.+||++.|.+|||||+++..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 5899999999999999966543
No 451
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.73 E-value=0.065 Score=43.25 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998864
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.67 E-value=0.14 Score=43.80 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
--+.++|++|+|||+|+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999864
No 453
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.66 E-value=0.14 Score=44.42 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
--++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 454
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.63 E-value=0.15 Score=43.29 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-|++.|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4788999999999999999753
No 455
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.57 E-value=0.15 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
=++.++|+.|+|||||++-+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998864
No 456
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.55 E-value=0.094 Score=40.25 Aligned_cols=50 Identities=14% Similarity=-0.026 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCCCCCCCcchhhcccCcEEEEEEECCChhcHHHHHHHHHHHHhH
Q 028396 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 147 ~~~l~iwD~~G~e~~~~~~~~~~~~ad~illvyDit~~~Sf~~l~~wl~~i~~~ 200 (209)
.+.+-|.|+++.- .......+..+|.++++...+..+ ..+...++.+++.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEA 124 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHH
Confidence 3678899999765 344556677899999998776544 6777777776654
No 457
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.50 E-value=0.17 Score=39.32 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028396 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~~ 123 (209)
++|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 458
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.47 E-value=0.16 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-|+|.|.+|+|||+|+..+...
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEcCCCCCHHHHHHHHHhc
Confidence 4789999999999999998754
No 459
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.44 E-value=0.15 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..+++.|++|+|||+++..+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.38 E-value=0.17 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999988753
No 461
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.36 E-value=0.16 Score=43.50 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028396 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~ 121 (209)
.+++|+.|+|||||+..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999998875
No 462
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.27 E-value=0.16 Score=43.13 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..|+++|++|+|||+|...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 463
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.26 E-value=0.16 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-.+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987764
No 464
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.16 E-value=0.16 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-+.++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 465
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.09 E-value=0.18 Score=43.18 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|++.|++|+|||+|...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4589999999999999988874
No 466
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.07 E-value=0.18 Score=38.64 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.|.+.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988754
No 467
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.07 E-value=0.12 Score=43.15 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999988764
No 468
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.03 E-value=0.18 Score=41.42 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
.+++.|++|+|||+++..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 469
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.02 E-value=0.12 Score=42.78 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998753
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.00 E-value=0.19 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|++-|..|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 471
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.97 E-value=0.17 Score=44.25 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028396 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~ 121 (209)
-+.++|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58899999999999999876
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.94 E-value=0.19 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.-|+++|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3478999999999999999874
No 473
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.91 E-value=0.18 Score=42.97 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...+++.|++|+|||+|++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998874
No 474
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.82 E-value=0.18 Score=42.26 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 475
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.81 E-value=0.18 Score=42.96 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988753
No 476
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.72 E-value=0.14 Score=46.82 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
++.++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998764
No 477
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.69 E-value=0.19 Score=42.63 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..+++.|++|+|||++.+.+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988763
No 478
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.58 E-value=0.22 Score=38.78 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
...|.+.|..|+||||+...+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987764
No 479
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.54 E-value=0.18 Score=45.26 Aligned_cols=19 Identities=26% Similarity=0.523 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028396 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~ 121 (209)
++++|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 480
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.54 E-value=0.19 Score=44.25 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
--+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998764
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.48 E-value=0.23 Score=38.67 Aligned_cols=24 Identities=17% Similarity=0.504 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..-+++.|++|+|||++...+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346899999999999999988754
No 482
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.47 E-value=0.15 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.1
Q ss_pred eEEE--EcCCCCCHHHHHHHHhcC
Q 028396 102 KISL--LGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvv--vGd~~vGKTSLi~rl~~~ 123 (209)
-+++ .|++|+|||+|++.+...
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHH
Confidence 4556 799999999999988753
No 483
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.43 E-value=0.16 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-++.++|+.|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999988754
No 484
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.42 E-value=0.21 Score=40.93 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028396 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~~ 123 (209)
+++.|++|+|||+++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999887643
No 485
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.41 E-value=0.24 Score=38.75 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028396 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~ 121 (209)
-.+++|+.|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999998764
No 486
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.39 E-value=0.22 Score=39.49 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHh
Q 028396 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~ 121 (209)
..-|++.|.+|+||||++..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999875
No 487
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.31 E-value=0.21 Score=40.81 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028396 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvvGd~~vGKTSLi~rl~~ 122 (209)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 89999999999999988764
No 488
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.25 E-value=0.2 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+++.|++|+|||+|++.+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998874
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.24 E-value=0.21 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
-+.++|+.|+|||||++-+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988753
No 490
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.23 E-value=0.2 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028396 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
--++++|++|+|||+|++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988753
No 491
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.21 E-value=0.12 Score=43.15 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
.+++.|++|+|||++++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 499999999999999998864
No 492
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.20 E-value=0.21 Score=42.87 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..+++.|++|+|||+|++.+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998643
No 493
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.19 E-value=0.22 Score=45.83 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+-.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999988653
No 494
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.16 E-value=0.21 Score=44.03 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
-+++.|++|+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999874
No 495
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.08 E-value=0.28 Score=38.23 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.3
Q ss_pred eeeeEEEEcCCCCCHHHHHHHHhcC
Q 028396 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 99 ~~~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
..+.|.+.|..|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999887653
No 496
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.98 E-value=0.25 Score=41.37 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028396 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~ 122 (209)
=+++.|.+|+|||+|+.++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 497
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.98 E-value=0.24 Score=38.15 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028396 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~ 121 (209)
-+++.|+.|+|||+++.+..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999999986655
No 498
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.85 E-value=0.14 Score=46.63 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028396 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvvGd~~vGKTSLi~rl~~~ 123 (209)
-.+.++|+.|+|||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 37889999999999999877643
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.80 E-value=0.18 Score=40.50 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhc
Q 028396 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvvGd~~vGKTSLi~rl~~ 122 (209)
..-|+|.|.+|+||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988763
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.79 E-value=0.24 Score=44.94 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028396 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvvGd~~vGKTSLi~rl~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
Done!