BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028397
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + G + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 67
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208
G R P+ + A A + +FD+T++ + W E + QG PN+++
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA--QGNPNMVM 120
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 120
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
V+ K+ L+GD +GKT +V++ + G++ NK L V G ++ +WD
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R +DA A+L ++D+T++ + ++I W +E ++ Q ++L
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G ER G++ KTL +QG R+ IWD G
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + A + +D+T R + S+ W + RK+ G N++ L
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQL 138
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R P+ + + A + ++D+T T +++ W E R+ GP +++
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ--HGPPSIVV 113
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207
I +WD G R +P +D+ A + ++D+T+ + W + R +G +++
Sbjct: 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVI 120
Query: 208 IL 209
I+
Sbjct: 121 IM 122
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
S Y D DL+ KI L+GD +GK++ + ++ NE S G+ +TL ++G R
Sbjct: 3 SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
I IWD G R + AV L ++D++ + + W SE R+
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE 113
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ T W E ++ PN++I
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVI 111
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
K+ LLG+ +GK+S V+++V + QE ++Q A + +T+ + + F IWD
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAA---FLTQTVCLDDTTVKFEIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
G R P+ + A A + ++D+T+ T W E ++ PN++I
Sbjct: 63 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVI 113
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ I +WD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R +P +D+ A + ++D+T+ + W + R +G +++I+
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIM 115
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ ++GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 114
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ ++GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 114
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQG 145
T SSG D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 TMSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPN 205
+ +WD G R +P +D+ + ++D+T+ + + W + R +G +
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT-ERGSD 119
Query: 206 LMIL 209
++I+
Sbjct: 120 VIIM 123
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ ++GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 114
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L LK+ LLGD +GK+S + ++V + + ++ G + + KT+ Q F IWD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R P+ + + A + ++D+T T +++ W E R+ GP +++
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ--HGPPSIVV 114
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ T W E ++ PN++I
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVI 113
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 114
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 114
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 115
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 5 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207
+ +WD G R +P +D+ + ++D+T+ + W + R +G +++
Sbjct: 65 VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVI 123
Query: 208 IL 209
I+
Sbjct: 124 IM 125
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 154
S + K+ LLG+ +GK+S V+++V G E G + +++ + + F IWD
Sbjct: 4 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
G R P+ + A A + ++D+T++ T W E ++ P+++I
Sbjct: 64 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR-QASPSIVI 116
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 114
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 199
++ +WD G R +DA+ L MFDLTS+ + ++ W S +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 200 WNQGPNLMIL 209
+ + P+++++
Sbjct: 124 YCENPDIVLI 133
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P + A A + ++D+T+ + W E ++ PN++I
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 115
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD G
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
R P+ + A A + ++D+T+ + W E ++ PN++I
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVI 113
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 199
++ +WD G R +DA+ L MFDLTS+ + ++ W S +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 200 WNQGPNLMIL 209
+ + P+++++
Sbjct: 124 YCENPDIVLI 133
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S + LK+ LLGD +GK+S V ++V + + ++ G + + KT+ F IWD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R P+ + + A + ++D+T + + ++ W E ++ GP +++
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE--HGPENIVM 131
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++G+ +GKTSF+ +Y + + G++ KT+ RI IWD G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQGPNLMI 208
R + A+ + M+D+T+ + N++ W ++ + W+ L++
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 116
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R +P +D+ + ++D+T+ + W + R +G +++I+
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIM 110
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
K+ LG+ +GKTS + ++ + + + Q G++ ++KTL + + +WD G R
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
+P +D+ A + ++D+T+R + + W
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 95
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L +LKI ++G+ +GK+S ++++ + + L G++ KT+ V G + +IWD
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G R P + A ++ ++D+T R T + W +E
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNE 112
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R +P +D+ + ++D+T+ + W + R +G +++I+
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRT-ERGSDVIIM 111
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R +P +D+ + ++D+T+ + W + R +G +++I+
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIM 115
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++GD +GKT ++ G +R+ G++ + + + G RI +WD G
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---NQGPNLMI 208
R V ++ A++F++D+T+ + +S+ W E ++ N P +++
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--------RIA 149
+K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QG ++
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARKWNQGPNLM 207
+WD G R +DA+ L MFDLTS+ + ++ W S +A + + P+++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 208 IL 209
++
Sbjct: 146 LI 147
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ S+K+ LLG+ +GK+S V+++V N+ E G + + + + + F IWD
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G R P ++A A L ++D+T + W E
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE 100
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ IWD G
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
R + A+ I+ ++D+T T +I W+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF 98
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 196
++ +WD G R +DA L FDLTS+ + ++ W S +
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 197 ARKWNQGPNLMIL 209
A + + P+++++
Sbjct: 121 ANAYCENPDIVLI 133
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGD 158
+ KI L GD +GK+SF+++ NE ++ G++ KTL+V G R +WD G
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
R + A +L ++D+T + +I W
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW 122
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 196
++ +WD G R +DA L FDLTS+ + ++ W S +
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 197 ARKWNQGPNLMIL 209
A + + P+++++
Sbjct: 121 ANAYCENPDIVLI 133
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLI 137
+GL +S + +G DS +KI L+GD +GK+ +V++V ++ S + G++
Sbjct: 2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 138 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
KT+ + G ++ +WD G R + A+ I+ ++D+T T +I W+
Sbjct: 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWF 115
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++GD +GKT ++ G +R+ G++ + + + G RI +WD G
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---NQGPNLMI 208
R V ++ A++F++D T+ + +S+ W E ++ N P +++
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILV 142
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G GK+ + +++ N+ ++ S G+ ++ + V G + IWD G
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + A L ++D+TSR T NS+ W ++AR PN++++
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL-ASPNIVVI 134
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ ++G+ +GKTSF+ +Y + + G++ KT+ R+ IWD G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + A+ + M+D+T+ + N++ W ++ + ++ +IL
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 133
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ +WD G
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
R + A+ I+ ++D+T T +I W+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWF 102
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ IWD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
+ A I+ ++D+T T +I W+
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWF 98
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + AV L ++D+ T ++ W E R + N++I+
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-HADSNIVIM 114
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + AV L ++D+ T ++ W E R + N++I+
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-HADSNIVIM 138
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + AV L ++D+ T ++ W E R + N++I+
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-HADSNIVIM 129
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
LK+ LLGD +GK+S + +YV N+ ++ G+ +N+ L V G + IWD G
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
R + A L F + R + ++ W E
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKE 104
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
R F + +A + A + +FD+T+ T ++ W E
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
R F + +A + A + +FD+T+ T ++ W E
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++G+ +GKTSF+ +Y + + G++ KT+ RI IWD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR--KWNQGPNLMI 208
R + A + +D+T+ + N++ W ++ + W+ L++
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
R F + +A + A + +FD+T+ T ++ W E
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GKTSF+ +Y + + G++ KT+ RI IWD G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + A+ L M+D+ ++ + ++ W ++ + ++ +IL
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ +WD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
+ A I+ ++D+T T +I W+
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWF 98
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G R ++ C + MFD+TSR T ++ W+ +
Sbjct: 73 GQEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 112
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDVGGD 158
LK+ +LGD +GKTS + +YV ++ + + G + + K + V G ++A +WD G
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 159 SRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
R F + +A + A + ++D+T+ + +I W E
Sbjct: 69 ER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDE 106
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIA 149
+G + + S+K+ L+GD GKTS ++ + S L V+G +
Sbjct: 24 AGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Query: 150 FSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW 200
IWD G +D + P+ DA +L FD+TS + ++I WY E +
Sbjct: 84 LHIWDTAGQD-DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQ------- 144
D D D + +K LGD +GKTS + +Y G + + G++ K ++ +
Sbjct: 5 DGDYDYL-IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 145 ---GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR--K 199
G RI +WD G R +DA+ L +FDLT+ + ++ W S+ +
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 200 WNQGPNLMI 208
+++ P++++
Sbjct: 124 YSENPDIVL 132
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + AV L ++D+ T ++ W E R + N++I+
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-HADSNIVIM 117
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + AV L ++D+ T ++ W E R + N++I+
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-HADSNIVIM 138
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A + MFD+TSR T ++ W+ +
Sbjct: 68 GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
R F + +A + A + +FD+T+ T ++ W E
Sbjct: 67 LER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G R ++ C + MFD+TSR T ++ W+ +
Sbjct: 73 GQEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 112
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
R + AV L ++D+ T ++ W E R
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR-IAFSIWDVGGD 158
KI L+GD +GK++ + ++ +E S G+ K++ ++ + I IWD G
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + AV L ++D+T + + +I W E R N N++IL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD-NADSNIVIL 117
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
R + AV L ++D+ T ++ W E R
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 110
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A + MFD+TSR T ++ W+ +
Sbjct: 68 GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G R ++ C + MFD+TSR T ++ W+ +
Sbjct: 68 GQEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 107
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A + MFD+TSR T ++ W+ +
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 100
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
R + AV L +FDLT T + W E
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE 107
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A + MFD+TSR T ++ W+ +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
R + AV L +FDLT T + W E
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE 122
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A + MFD+TSR T ++ W+ +
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
V K+ L+GD GKT+FV +++ E E+ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
R ++ C + MFD+TSR T ++ W+ +
Sbjct: 69 QEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 107
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIW 153
+ ++ + K+ L+GD GKT+FV +++ E E+ + G+ + + I F +W
Sbjct: 7 NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVW 66
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
D G + +A + MFD+TSR T ++ W+ +
Sbjct: 67 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD 109
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIA 149
GYD D KI L+GD +GK++ + ++ +E S G+ +T+ V+ +I
Sbjct: 4 GYDYD---YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIK 60
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
IWD G R + AV L ++D++ + + W +E R+ N N+ +
Sbjct: 61 AQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE-NADDNVAV 118
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
V K+ L+GD GKT+FV +++ E E+ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
+ A + MFD+TSR T ++ W+ +
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 160 R 160
R
Sbjct: 72 R 72
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
R + A L ++D+TSR T N++ W ++AR
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 109
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV---QGARIAFSIWDV 155
++ KI L+GD +GKT+++ + + E++ A + +N + QG I F++WD
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + + A + FD+TSR T ++ W E
Sbjct: 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKE 109
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
R + A L ++D+TSR T N++ W ++AR
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 110
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
V KI ++GD Q GKT+ + + + + + + RI S+WD G
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 80
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ PN +L
Sbjct: 81 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKML 131
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 160 R 160
R
Sbjct: 68 R 68
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDV 155
++ + K+ L+GD GKT+FV +++ E E+ + G+ + + I F +WD
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + +A + MFD+TSR T ++ W+ +
Sbjct: 61 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD 101
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWD 154
++ + K+ L+GD GKT+FV +++ E E+ + G+ + + I F +WD
Sbjct: 1 GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWD 60
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + +A + MFD+TSR T ++ W+ +
Sbjct: 61 TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD 102
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 160 R 160
R
Sbjct: 70 R 70
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
V KI ++GD Q GKT+ + + + + + + RI S+WD G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 85
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ PN +L
Sbjct: 86 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKML 136
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G R ++ C + MFD+TSR T ++ W+ +
Sbjct: 68 GLEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 107
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
V KI ++GD Q GKT+ + + + + + + RI S+WD G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 64
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ PN +L
Sbjct: 65 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKML 115
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A + MFD+TSR T ++ W+ +
Sbjct: 64 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 103
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 69
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A + MFD+TSR T ++ W+ +
Sbjct: 70 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 109
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLMVQGARIAFSIWDV 155
K ++GD +GK+ + ++ E+ G+ + + V G +I IWD
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFT----EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R + A L ++D+T R T N + W ++AR PN +I+
Sbjct: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVII 124
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLMVQGARIAFSIWDV 155
K ++GD +GK+ + ++ E+ G+ + + V G +I IWD
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFT----EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 86
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R + A L ++D+T R T N + W ++AR PN +I+
Sbjct: 87 AGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVII 139
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT + ++ + + + G++ +T+ + G RI IWD G
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
R + A+ I+ ++D+T+ + ++I W
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT + ++ + + + G++ +T+ + G RI IWD G
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
R + A+ I+ ++D+T+ + ++I W
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + N++ W E ++
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 109
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + N++ W E ++
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 126
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + N++ W E ++
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + N++ W E ++
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + N++ W E ++
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G R ++ C + FD+TSR T ++ W+ +
Sbjct: 68 GQEKFGGLRDGYYIQAQCA-----IIXFDVTSRVTYKNVPNWHRD 107
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + N++ W E ++
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 134
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
R + A L ++D+TSR T N++ W ++AR
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 107
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK ++++ + E + G++ +T+ + G I IWD G
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + N++ W E ++
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G R
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
+ A I+ ++D+T + + N++ W E ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 100
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++GD +GK+ ++++ + + G+ + + + G +I IWD G
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG-Q 69
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
SF + + + A L ++D+T R T N + W +AR+ + N++I+
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ-HSNSNMVIM 119
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++GD +GK+ ++++ + + G+ + + + G +I IWD G
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
SF + + + A L ++D+T R T N + W +AR+ + N++I+
Sbjct: 82 -SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ-HSSSNMVIM 130
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 96 SDLVSLKISLLGDCQIGKTS----FVVKYVGNEQERSLQMAGLNLINKTLMVQG-ARIAF 150
S + LKI +LGD GKTS F + G + ++++ GL+ + + + G +
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI---GLDFFLRRITLPGNLNVTL 58
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
IWD+GG + + A +L ++D+T+ + ++ WY+ +K
Sbjct: 59 QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKK 107
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIW 153
D D + KI L+G+ +GKT V ++ G G++ + KT+ + G ++ IW
Sbjct: 22 DYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
D G R + A A++ +D+T + + W E ++ + +L
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
L++ ++G +GKTS + ++ + E G++ KT+ ++G +I IWD G
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + T + + W K+
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY 127
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 138
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + S + G++ +T+ ++ + IWD G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T R + +++ W E ++
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRY 110
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 71
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 121
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y GN + + ++V G+ + +WD G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
P++ + A L F L S+ + +I W E + + G ++++
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLV 116
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 138
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 80
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 130
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 113
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 115
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 6 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 64
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 114
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 111
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + P+ IL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPHTPIL 111
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + P+ IL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPHTPIL 112
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + P+ IL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPHTPIL 112
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ ++GD +GK+S ++++ N S + G++ +T+ + G ++ IWD G
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
R + ++ ++D+TS + ++ W E
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHE 106
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + ++ W E ++
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
R + A I+ ++D+T + + ++ W E ++
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + ++ WY E R + PN I+
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPII 138
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
G S + ++K ++GD +GK ++ Y N + + +MV G +
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMI 208
+WD G +D + P++ L F L S + ++ WY E R + PN I
Sbjct: 61 GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR--HHCPNTPI 117
Query: 209 L 209
+
Sbjct: 118 I 118
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + + + WY E R + PN I+
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR--HHCPNTPII 263
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + + + WY E R + PN I+
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR--HHCPNTPII 263
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209
+D + P++ L F L S + + + WY E R + PN I+
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR--HHCPNTPII 263
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ L+GD Q GKT+ + + + L + R+ S+WD G S
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 71
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSE 196
+D+V P+ D+ A+L FD++ T++S + W +E
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE 108
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ L+GD Q GKT+ + + + L + R+ S+WD G S
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 70
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSE 196
+D+V P+ D+ A+L FD++ T++S + W +E
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE 107
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ L+GD Q GKT+ + + + L + R+ S+WD G S
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 87
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSE 196
+D+V P+ D+ A+L FD++ T++S + W +E
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE 124
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y N + + ++V GA + +WD G
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209
P++ + A + F L S+ + ++ W E + + G ++++
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV 118
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GK+ ++++ + + G++ KT+ + G + IWD G
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + + I+ ++D+T + + N + W E ++ L +L
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 131
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y N + + ++V G + +WD G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209
P++ + A + F L S+ + ++ W E R + G ++++
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV 116
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GK+ ++++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + + I+ ++D+T + + N + W E ++ L +L
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GK+ ++++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + + I+ ++D+T + + N + W E ++ L +L
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y N+ + + + V G + +WD G
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209
P++ + A + F L S+ + +++ W E R++ PN+ I+
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIV 117
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 70 SSPAPDTMEAGLVELSRTFSSGYDTDSD------LVSLKISLLGDCQIGKTSFVVKYVGN 123
SP P+ ++ G + + F S + S L +K+ L+GD GKTS + + +G
Sbjct: 5 ESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGE 64
Query: 124 E-QERSLQMAGLNLINKTLM-VQG-------ARIAFSIWDVGG 157
+ Q GLN++ K ++G F WD GG
Sbjct: 65 TFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG 107
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV + +WD G
Sbjct: 9 AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 67
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
+D + P++ L F L S + ++ W+ E R
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 108
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV + +WD G
Sbjct: 10 AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 68
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
+D + P++ L F L S + ++ W+ E R
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 109
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
+D + P++ L F L S + ++ W+ E R
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 102
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSR 184
+D + P++ V + D+TSR
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSR 89
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
++++L+G GKT+FV V G E + G N+ V + IWD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGGQ 77
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSR 184
R C+ AI++M D R
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADR 103
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+LKI ++GD +GKT ++ + E + + + + +WD G
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 81
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKW 200
+D + P++ D+ +L F + +R + ++I W E + +
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY 124
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
I F IWD G R VP+ + A + +FD+++ TL+ W ++ +
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK 143
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+LKI ++GD +GKT ++ + E + + + + +WD G
Sbjct: 22 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 80
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKW 200
+D + P++ D+ +L F + +R + ++I W E + +
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY 123
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K L+GD +GKTS VV Y N + + + V G + + D G
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEAR 198
FD + P+ + L F + S + ++ W E R
Sbjct: 81 -FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 100 SLKISLLGDCQIGKTSFV-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
++++L+G GKT+FV V G E + G N+ T + +WD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 77
Query: 159 SRSFDHVPIACKDAVAILFMFD 180
R C+ AI++M D
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVD 99
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 100 SLKISLLGDCQIGKTSFV-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
++++L+G GKT+FV V G E + G N+ T + +WD+GG
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 86
Query: 159 SRSFDHVPIACKDAVAILFMFD 180
R C+ AI++M D
Sbjct: 87 PRFRSMWERYCRGVSAIVYMVD 108
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKTS + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSR 184
+ ++ AI+F+ D R
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR 97
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTL 187
++ ++F+ D R +
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDSNDRSRI 100
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG R
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 56
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTL 187
++ ++F+ D R +
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRI 83
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 161 SFDHVPIACKDAVAILFMFDLTSRC 185
++ ++F+ D R
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDSNDRS 98
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWD 154
++ LLGD +GKTS + G QER L + G ++ +TL V G + D
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVD 58
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ A + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 54
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
G +D + P++ L F + S + ++
Sbjct: 62 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 96
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
G +D + P++ L F + S + ++
Sbjct: 61 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 95
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
G +D + P++ L F + S + ++
Sbjct: 62 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 96
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 71
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 71
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSE 196
+D + P++ L F + S + ++ W E
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 16 ELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 69
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNV----ECVQYCNISFTVWDVGGQDR 73
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 6 SAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
G +D + P++ L F + S + ++
Sbjct: 66 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 100
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
+ ++ ++F+ D R +N
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNE 250
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 13 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 71
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 72 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 103
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
S++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
+ ++ ++F+ D R +N
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNE 87
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 4 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 94
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNS 189
++ ++F+ D R +N
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNE 85
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 97
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 5 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 95
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINK 139
GL+ + R S D + ++I LLG GKT+ + + + G N+ K
Sbjct: 2 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 54
Query: 140 TLMVQGARIAFSIWDVGGDSR 160
++ QG ++ ++WD+GG +
Sbjct: 55 SVQSQGFKL--NVWDIGGQRK 73
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ V+ I F++WDVGG R
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNICFTVWDVGGQDR 73
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINK 139
GL+ + R S D + ++I LLG GKT+ + + + G N+ K
Sbjct: 1 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 53
Query: 140 TLMVQGARIAFSIWDVGGDSR 160
++ QG ++ ++WD+GG +
Sbjct: 54 SVQSQGFKL--NVWDIGGQRK 72
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
+ ++ ++F+ D R +N
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNE 101
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
+ ++ ++F+ D R +N
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNE 102
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+++ +LG GKTS + + + ++ G+NL +TL Q I+F +WD+GG +
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETL--QYKNISFEVWDLGGQTG 78
Query: 161 SFDHVPIACKDAVAILFMFDLTSR 184
+ D A++++ D T R
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDR 102
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
G S + ++K ++GD +GK ++ Y N+ + T+M+ G
Sbjct: 1 GSSGSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
++D G +D + P++ L F + S + ++
Sbjct: 61 GLFDTAG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 100
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 20 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 160 R 160
+
Sbjct: 76 K 76
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-L 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 97
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 322 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 377
Query: 160 R 160
+
Sbjct: 378 K 378
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 17 DVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNV----ETVEFRNISFTVWDVGGQD 72
Query: 160 R 160
+
Sbjct: 73 K 73
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG +
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG +
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 68
Query: 160 R 160
+
Sbjct: 69 K 69
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
+ ++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 55
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
+ ++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 56
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 67
Query: 160 R 160
+
Sbjct: 68 K 68
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I F++WDVGG
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 160 R 160
+
Sbjct: 85 K 85
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G + D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI 190
+D + P++ L F + S + ++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 93
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 66
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 112 GKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 30 GKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 71
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 77 MEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV--VKYVGNEQE 126
M AG ++L+ + S + D L +++ G+ GK+SF+ ++ +GNE+E
Sbjct: 46 MRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE 97
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAG-LNLINKTLMVQGARIAFSIWDV--GG 157
K+ LLG+ +GK++ + G + + + +M + + +MV + ++D+ G
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 158 DSRSF--DHVPIACKDAVAILFMFDLTSRCTLNSI 190
D+ + DH + A L +F +T R + + +
Sbjct: 73 DAGGWLQDH---CLQTGDAFLIVFSVTDRRSFSKV 104
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
S KI++LG +GK+S +++V + S N K + V G + D G
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
S KI++LG +GK+S +++V + S N K + V G + D G
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 63
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
S KI++LG +GK+S +++V + S N K + V G + D G
Sbjct: 1 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 58
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+I LG GKT+ + K + ++ G N+ T + F++WDVGG +
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I LLG GKT+ + + + G N+ K++ QG ++ ++WD+GG +
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQGFKL--NVWDIGGQRK 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,011,282
Number of Sequences: 62578
Number of extensions: 162952
Number of successful extensions: 748
Number of sequences better than 100.0: 232
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 233
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)