BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028397
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1
Length = 198
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 151
D + V++K+ ++GD IGKTS +V YV G+ E S Q G+N + KT+ ++ I FS
Sbjct: 3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62
Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
IWD+GG + +P+ C DAVAILFMFDL+ + TLNSI WY +AR +N+
Sbjct: 63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNK 113
>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TEM1 PE=1 SV=1
Length = 245
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 157
V +++ L+GD Q+GKTS +VKYV N ++ Q G+N + + + ++ I FSI D+GG
Sbjct: 19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
+ +PIA + I+F+FDLT TL+SI WY +A N
Sbjct: 79 QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLN 122
>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2
SV=2
Length = 388
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 152
D V+ K LLGD +GKTSF+VKY N E L G+ L NK ++V G R+ I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244
Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
WD G R +DA A+L ++D+T++ T ++I W E R++ Q +++L
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVL 301
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKT 140
E S FS YD ++ K+ LLGD +GKT F++++ + G++ NK
Sbjct: 17 ERSPPFSPNYD-----LTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKV 71
Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
+ V GAR+ IWD G R +DA A+L ++D+T++ + ++I W +E ++
Sbjct: 72 VTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEY 131
Query: 201 NQ 202
Q
Sbjct: 132 AQ 133
>sp|Q29RR0|RAB26_BOVIN Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1
Length = 256
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 55 PAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKT 114
PA + R ++ P P+ G + R+ S G D V+ K+ L+GD +GKT
Sbjct: 21 PAANGPRPVRPGTAR--PGPEAPPNGPPQPGRS-SVGGGGDFYDVAFKVMLVGDSGVGKT 77
Query: 115 SFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172
+V++ + G++ NK + V G ++ IWD G R +DA
Sbjct: 78 CLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDA 137
Query: 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
A+L ++D+T++ + +SI W +E ++ Q +++L
Sbjct: 138 HALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLML 174
>sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3
Length = 223
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKT 140
E S S YD ++ K+ LLGD +GKT F++++ + G++ NK
Sbjct: 17 ERSPPCSPSYD-----LTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKV 71
Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
+ V G R+ IWD G R +DA A+L ++D+T++ + ++I W +E ++
Sbjct: 72 VTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEY 131
Query: 201 NQGPNLMIL 209
Q +++L
Sbjct: 132 AQRDVVIML 140
>sp|P51156|RAB26_RAT Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2
Length = 257
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
P P+ G + R S G D V+ K+ L+GD +GKT +V++ +
Sbjct: 37 PGPEAPPNGPPQSGRP-SLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 95
Query: 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
G++ NK L V G ++ IWD G R +DA A+L ++D+T++ + ++
Sbjct: 96 STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 155
Query: 190 IVGWYSEARKWNQGPNLMIL 209
I W +E +++ Q +++L
Sbjct: 156 IQAWLTEIQEYAQQDVVLML 175
>sp|Q9ULW5|RAB26_HUMAN Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3
Length = 256
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 73 APDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQ 130
PD G ++ R S G D V+ K+ L+GD +GKT +V++ +
Sbjct: 37 GPDAPPNGPLQPGRP-SLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS 95
Query: 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI 190
G++ NK L V G ++ +WD G R +DA A+L ++D+T++ + ++I
Sbjct: 96 TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI 155
Query: 191 VGWYSEARKWNQ 202
W +E ++ Q
Sbjct: 156 QAWLTEIHEYAQ 167
>sp|Q504M8|RAB26_MOUSE Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=1 SV=1
Length = 260
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
P P+ G + R S G D V+ K+ L+GD +GKT +V++ +
Sbjct: 40 PGPEAPPNGPPQSIRP-SLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 98
Query: 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
G++ NK L V G ++ IWD G R +DA A+L ++D+T++ + ++
Sbjct: 99 STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 158
Query: 190 IVGWYSEARKWNQGPNLMIL 209
I W +E +++ Q +++L
Sbjct: 159 IQAWLTEIQEYAQQDVVLML 178
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208
G R P+ + A A + +FD+T++ + W E + QG PN+++
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA--QGNPNMVM 118
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208
G R P+ + A A + +FD+T++ + W E + QG PN+++
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQA--QGNPNMVM 118
>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Length = 223
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 117
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
V K+ LLG+ +GKTS V++Y N+ E++LQ + + K L + G RI +IWD
Sbjct: 15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQAS---FVEKRLNIGGKRIQLAIWD 71
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
G R PI +D+ + ++D+T + + W E ++
Sbjct: 72 TAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKR 116
>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Length = 223
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRK 117
>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Length = 222
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 16 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 75
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 76 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 116
>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Length = 225
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 19 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 78
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 79 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 119
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
SD KI L+GD +GKTS ++++ N QE S+ M ++ NK +++ G IWD
Sbjct: 2 SDPDVFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
G R + A +L +D+T + T N++ W E +++
Sbjct: 62 TAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRY 107
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V + QE ++ G + TL V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTLAVNNATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208
G R P+ + A A + ++D+TS + W E +K QG PN+++
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQK--QGNPNMVM 118
>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Length = 222
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
R PI +D+ + ++D+T + + W E RK
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRK 117
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V + QE ++ G + T+ V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTVSVNNATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208
G R P+ + A A + ++D+TS +L W E +K QG PN+++
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQK--QGNPNMVM 118
>sp|P41914|RAN_TETPY GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1
Length = 223
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 93 DTDSDLVS-LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAF 150
D D+V+ K+ L+GD +GKT+FV ++ G ++R + G+N+ N L I F
Sbjct: 3 DNKQDVVAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRF 62
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
+IWD G + A A + MFD+TSR T +I W+ +
Sbjct: 63 NIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKD 108
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G ER G++ KTL +QG R+ IWD G
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + A + +D+T R + S+ W + RK+ G N++ L
Sbjct: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQL 127
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSI 152
DSD+ KI L+GD +GKTS ++++ N QE S+ M ++ NK + + G I
Sbjct: 3 DSDV--FKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQI 60
Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
WD G R + A +L +D+T + T N++ W E +++
Sbjct: 61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRY 108
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARI 148
GY TD + L K+ L+GD +GK++ + ++ NE S G+ KTL V +
Sbjct: 3 GYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVV 62
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
IWD G R + AV L ++D+T R T + W E R + PN+++
Sbjct: 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRD-HTDPNIVV 121
Query: 209 L 209
+
Sbjct: 122 M 122
>sp|P41915|RAN_TETTH GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2
SV=1
Length = 225
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ L+GD +GKT+FV ++ G ++R + G+N+ N L I F+IWD
Sbjct: 9 VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTA 68
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
G + A A + MFD+TSR T +I W+ +
Sbjct: 69 GQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKD 108
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
G R P+ + + A + ++D+T T +++ W E R+ + PN+++
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQ-HGPPNIVV 113
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPN 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ PN
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPN 125
Query: 206 LMI 208
++I
Sbjct: 126 IVI 128
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPN 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ PN
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPN 125
Query: 206 LMI 208
++I
Sbjct: 126 IVI 128
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPN 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ PN
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPN 125
Query: 206 LMI 208
++I
Sbjct: 126 IVI 128
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPN 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ PN
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPN 125
Query: 206 LMI 208
++I
Sbjct: 126 IVI 128
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPN 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ PN
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPN 125
Query: 206 LMI 208
++I
Sbjct: 126 IVI 128
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPN 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ PN
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPN 125
Query: 206 LMI 208
++I
Sbjct: 126 IVI 128
>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2
SV=1
Length = 216
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 90 SGYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
+GY + D L K+ L+GD +GK++ + ++ NE S G+ +TL V G
Sbjct: 2 AGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKV 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207
+ IWD G R + AV L ++D+T R T ++ W E + + PN++
Sbjct: 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKN-HTDPNIV 120
Query: 208 IL 209
++
Sbjct: 121 VM 122
>sp|P90726|RAB18_CAEBR Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18
PE=3 SV=1
Length = 202
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGN--EQERSLQMAGLNLINKTLMVQGARIAF 150
D+ S L +LKI ++G+ +GK+S ++++V + + E++ + G++ ++ + G R+
Sbjct: 4 DSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATI-GVDFRVTSMTIDGNRVKL 62
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207
+IWD G R P + A ++ ++D+TSR + + W +E + N++
Sbjct: 63 AIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNVI 119
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 SAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207
I +WD G R +P +D+ A + ++D+T+ + W + R +G +++
Sbjct: 62 IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVI 120
Query: 208 IL 209
I+
Sbjct: 121 IM 122
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R P+ + + A + ++D+T T +++ W E R+ GP +++
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ--HGPPSIVV 113
>sp|Q8MXS1|RAB18_CAEEL Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=3
SV=1
Length = 203
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGN----EQERSLQMAGLNLINKTLMVQGARI 148
D+ S L +LKI ++G+ +GK+S ++++V + EQ ++ G++ ++ + G R+
Sbjct: 4 DSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATI---GVDFRVTSMAIDGNRV 60
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207
+IWD G R P + A ++ ++D+TSR + + W E + N++
Sbjct: 61 KLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQEVDTYCTNDNII 119
>sp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d OS=Arabidopsis thaliana GN=RABA2D PE=2
SV=1
Length = 217
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI L+GD +GKT+ + ++ NE S G+ +TL V+G + IWD G
Sbjct: 13 FKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + AV L ++D+T R T ++++ W E R + N++I+
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD-HADSNIVIM 121
>sp|Q55FK2|RAB6_DICDI Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3
SV=1
Length = 208
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L K+ LGD +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD
Sbjct: 4 LSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R +P +D+ + ++D+T++ + + + W + R +G N++I+
Sbjct: 64 GQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRN-ERGNNVVIM 115
>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1
SV=1
Length = 210
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 85 SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ 144
S + SGYD +S KI L+GD +GK+S +V ++ + E G++ K L V
Sbjct: 3 SSSGQSGYD-----LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG 57
Query: 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIV 191
G R+ +IWD G R + A I+ ++D+T R T ++V
Sbjct: 58 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLV 104
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
+++K+ LLG+ +GK+S V+++V ++ +E G + K + G I F IWD G
Sbjct: 11 LTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAG 70
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
R P+ ++A A L +FD+T+ + W E
Sbjct: 71 QERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEE 109
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G R G++ KTL +QG R+ IWD G
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + A + +D++ R T S+ W + RK+ G N++ L
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKY-AGSNIVQL 125
>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3
SV=1
Length = 207
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L K+ LGD +GKTS + +++ ++ + + Q G++ ++KT+ ++ + +WD
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R +P +D+ + ++D+ +R + + W E R G +++L
Sbjct: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVL 119
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1
Length = 210
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G R G++ KTL +QG R+ IWD G
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
R + A + +D++ R T S+ W + RK+ G N++ L
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKY-AGSNIVQL 125
>sp|P28185|RAA1A_ARATH Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=1
SV=1
Length = 216
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 90 SGYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
+GY D + L K+ L+GD +GK++ + ++ NE S G+ KT V+G
Sbjct: 2 AGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKV 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207
+ IWD G R + AV L ++D+T T + W E R + PN++
Sbjct: 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELR-GHTDPNIV 120
Query: 208 IL 209
++
Sbjct: 121 VM 122
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
K+ LLG+ GKT + V NE + G + K+++V I IWD G R
Sbjct: 50 FKLVLLGEMNTGKTCISSRLVRNEFGPTDSTIGAAFLVKSMVVDNINIKLEIWDTAGQER 109
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
P+ + A A + ++D+T + T ++ W SE +K + PNL++
Sbjct: 110 YRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQK-HASPNLIL 156
>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1
Length = 205
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIW 153
D L +LKI ++G+ +GK+S ++++ + + L G++ KT+ + G R +IW
Sbjct: 3 DDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIW 62
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
D G R P + A ++ ++D+T R T + W +E +
Sbjct: 63 DTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETY 109
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L K+ LGD +GKTS + +++ ++ + + Q G++ ++KT+ ++ + +WD
Sbjct: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
G R +P +D+ + ++D+ SR + + W E R +G +++++
Sbjct: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRT-ERGSDVIVV 118
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARI 148
+G + + K+ LLG+ +GK+S V+++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208
F IWD G R P+ + A A + ++D+T+ T W E ++ PN++I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVI 129
>sp|Q8MYF2|RABJ_DICDI Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3
SV=1
Length = 256
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 102 KISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
K+ LLG +GKT+ ++YV G +R G + + +T+ ++G +I + IWD G R
Sbjct: 11 KVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDR 70
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209
+ + A + +FD+T + T + + GW E + Q +M+L
Sbjct: 71 FRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVL 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,124,796
Number of Sequences: 539616
Number of extensions: 2544747
Number of successful extensions: 9749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 542
Number of HSP's that attempted gapping in prelim test: 9215
Number of HSP's gapped (non-prelim): 731
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)