Query 028397
Match_columns 209
No_of_seqs 253 out of 1504
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.9E-34 1.5E-38 225.6 12.1 108 100-207 9-117 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.7E-32 1.9E-36 213.4 12.5 115 94-208 16-132 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.3E-30 5E-35 204.8 13.4 111 98-208 3-114 (200)
4 KOG0078 GTP-binding protein SE 100.0 1.2E-29 2.5E-34 203.7 13.0 112 98-209 10-122 (207)
5 KOG0080 GTPase Rab18, small G 100.0 1.9E-29 4.1E-34 194.5 12.7 106 98-203 9-115 (209)
6 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.6E-29 1E-33 200.0 12.6 114 95-209 10-124 (222)
7 KOG0098 GTPase Rab2, small G p 100.0 3.6E-29 7.8E-34 197.2 11.6 110 99-208 5-115 (216)
8 KOG0079 GTP-binding protein H- 100.0 1.1E-29 2.3E-34 193.6 8.3 110 100-209 8-118 (198)
9 KOG0095 GTPase Rab30, small G 100.0 2.3E-28 5E-33 186.7 9.6 109 100-208 7-116 (213)
10 KOG0086 GTPase Rab4, small G p 99.9 5.5E-28 1.2E-32 185.2 9.3 110 100-209 9-119 (214)
11 KOG0394 Ras-related GTPase [Ge 99.9 8.3E-28 1.8E-32 189.1 10.2 103 98-200 7-110 (210)
12 KOG0093 GTPase Rab3, small G p 99.9 3.1E-27 6.7E-32 179.9 11.8 114 94-208 16-130 (193)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.4E-26 3E-31 185.8 14.5 111 98-209 3-115 (182)
14 cd04133 Rop_like Rop subfamily 99.9 1.9E-26 4.2E-31 184.1 15.0 108 101-209 2-111 (176)
15 cd04121 Rab40 Rab40 subfamily. 99.9 1.3E-26 2.9E-31 187.0 13.8 111 99-209 5-116 (189)
16 cd04120 Rab12 Rab12 subfamily. 99.9 1.2E-26 2.7E-31 189.1 13.6 108 101-208 1-109 (202)
17 cd04131 Rnd Rnd subfamily. Th 99.9 2.4E-26 5.1E-31 183.6 14.4 109 100-209 1-111 (178)
18 cd01875 RhoG RhoG subfamily. 99.9 5.6E-26 1.2E-30 183.0 14.4 110 99-209 2-113 (191)
19 cd04128 Spg1 Spg1p. Spg1p (se 99.9 6E-26 1.3E-30 181.8 14.0 108 101-208 1-109 (182)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.4E-25 3.1E-30 186.4 14.6 111 98-209 11-123 (232)
21 KOG0091 GTPase Rab39, small G 99.9 1.1E-26 2.4E-31 179.7 6.5 110 99-208 7-120 (213)
22 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.1E-25 4.5E-30 181.9 13.3 100 101-200 1-106 (202)
23 cd01874 Cdc42 Cdc42 subfamily. 99.9 4.1E-25 8.8E-30 175.7 14.7 108 101-209 2-111 (175)
24 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 4.1E-25 8.8E-30 182.6 13.3 109 100-209 1-111 (222)
25 PF00071 Ras: Ras family; Int 99.9 4.5E-25 9.8E-30 171.5 12.2 107 102-208 1-108 (162)
26 KOG0083 GTPase Rab26/Rab37, sm 99.9 5.3E-27 1.1E-31 176.3 1.2 104 104-207 1-106 (192)
27 PLN03071 GTP-binding nuclear p 99.9 1.2E-24 2.6E-29 179.3 15.0 112 98-209 11-123 (219)
28 KOG0088 GTPase Rab21, small G 99.9 1.4E-25 3.1E-30 172.9 8.0 111 97-207 10-121 (218)
29 cd04122 Rab14 Rab14 subfamily. 99.9 1.1E-24 2.5E-29 170.6 13.4 109 100-208 2-112 (166)
30 cd04117 Rab15 Rab15 subfamily. 99.9 1.6E-24 3.6E-29 169.4 13.8 107 101-207 1-108 (161)
31 KOG0393 Ras-related small GTPa 99.9 3.5E-25 7.6E-30 178.1 8.8 110 99-209 3-115 (198)
32 cd01871 Rac1_like Rac1-like su 99.9 3.9E-24 8.5E-29 169.9 14.5 108 101-209 2-111 (174)
33 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.2E-24 6.9E-29 173.8 14.1 100 101-200 1-102 (201)
34 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.8E-24 6.1E-29 170.0 13.4 106 101-206 1-108 (170)
35 PLN00023 GTP-binding protein; 99.9 3.9E-24 8.4E-29 184.3 14.7 106 96-201 17-136 (334)
36 cd04124 RabL2 RabL2 subfamily. 99.9 7.5E-24 1.6E-28 165.6 14.3 109 101-209 1-110 (161)
37 cd01865 Rab3 Rab3 subfamily. 99.9 5.9E-24 1.3E-28 166.5 13.4 108 101-208 2-111 (165)
38 cd04119 RJL RJL (RabJ-Like) su 99.9 7E-24 1.5E-28 164.7 13.0 102 101-202 1-103 (168)
39 cd00877 Ran Ran (Ras-related n 99.9 1.5E-23 3.3E-28 165.0 14.8 109 101-209 1-110 (166)
40 cd04110 Rab35 Rab35 subfamily. 99.9 1.1E-23 2.4E-28 170.6 13.9 110 100-209 6-116 (199)
41 cd01867 Rab8_Rab10_Rab13_like 99.9 1E-23 2.2E-28 165.5 13.0 109 100-208 3-113 (167)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.3E-23 2.8E-28 164.3 13.5 109 100-208 2-112 (166)
43 cd04136 Rap_like Rap-like subf 99.9 1.3E-23 2.9E-28 163.0 13.4 108 100-208 1-111 (163)
44 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.4E-23 3.1E-28 166.3 13.2 108 100-208 2-112 (172)
45 cd04176 Rap2 Rap2 subgroup. T 99.9 1.9E-23 4.2E-28 162.6 13.7 101 100-201 1-102 (163)
46 cd04134 Rho3 Rho3 subfamily. 99.9 2.5E-23 5.3E-28 167.2 14.6 108 101-209 1-110 (189)
47 smart00176 RAN Ran (Ras-relate 99.9 1.2E-23 2.6E-28 171.2 12.8 104 106-209 1-105 (200)
48 cd04125 RabA_like RabA-like su 99.9 1.9E-23 4E-28 167.3 13.7 106 101-206 1-107 (188)
49 cd04118 Rab24 Rab24 subfamily. 99.9 2.6E-23 5.5E-28 166.8 14.5 109 101-209 1-111 (193)
50 cd04127 Rab27A Rab27a subfamil 99.9 1.6E-23 3.4E-28 165.8 12.8 110 99-208 3-125 (180)
51 KOG0097 GTPase Rab14, small G 99.9 3.3E-24 7.1E-29 162.8 8.1 109 100-208 11-121 (215)
52 cd04106 Rab23_lke Rab23-like s 99.9 2.3E-23 5E-28 161.7 13.1 109 101-209 1-112 (162)
53 KOG0081 GTPase Rab27, small G 99.9 2.3E-25 5E-30 171.8 1.7 109 100-208 9-129 (219)
54 PTZ00369 Ras-like protein; Pro 99.9 3.3E-23 7.1E-28 166.3 14.0 102 99-201 4-106 (189)
55 cd04109 Rab28 Rab28 subfamily. 99.9 2.2E-23 4.9E-28 170.8 13.2 101 101-201 1-103 (215)
56 PLN03110 Rab GTPase; Provision 99.9 5.8E-23 1.3E-27 168.7 14.8 109 99-207 11-120 (216)
57 cd04116 Rab9 Rab9 subfamily. 99.9 5.6E-23 1.2E-27 161.3 13.9 103 99-201 4-107 (170)
58 cd01868 Rab11_like Rab11-like. 99.9 4.4E-23 9.6E-28 160.9 13.2 108 100-207 3-111 (165)
59 cd04111 Rab39 Rab39 subfamily. 99.9 4E-23 8.7E-28 169.2 13.5 102 100-201 2-105 (211)
60 cd01864 Rab19 Rab19 subfamily. 99.9 4E-23 8.6E-28 161.5 12.9 109 100-208 3-113 (165)
61 cd04130 Wrch_1 Wrch-1 subfamil 99.9 8.1E-23 1.8E-27 161.4 14.8 107 101-208 1-109 (173)
62 cd04175 Rap1 Rap1 subgroup. T 99.9 5.2E-23 1.1E-27 160.6 13.2 108 100-208 1-111 (164)
63 cd04113 Rab4 Rab4 subfamily. 99.9 6.2E-23 1.3E-27 159.5 13.4 108 101-208 1-110 (161)
64 cd04132 Rho4_like Rho4-like su 99.9 6E-23 1.3E-27 163.7 13.4 108 101-209 1-111 (187)
65 cd04115 Rab33B_Rab33A Rab33B/R 99.9 7.7E-23 1.7E-27 161.1 13.6 109 100-208 2-114 (170)
66 cd04112 Rab26 Rab26 subfamily. 99.9 6.4E-23 1.4E-27 164.9 13.1 108 101-208 1-110 (191)
67 cd01866 Rab2 Rab2 subfamily. 99.9 9E-23 2E-27 160.4 13.4 109 100-208 4-114 (168)
68 cd04103 Centaurin_gamma Centau 99.9 1.2E-22 2.6E-27 159.1 13.9 102 101-208 1-104 (158)
69 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.3E-22 2.7E-27 156.7 13.4 108 100-208 1-111 (162)
70 cd04101 RabL4 RabL4 (Rab-like4 99.9 9.7E-23 2.1E-27 158.7 12.8 108 101-208 1-112 (164)
71 cd04143 Rhes_like Rhes_like su 99.9 7.4E-23 1.6E-27 171.7 12.9 99 101-200 1-100 (247)
72 smart00174 RHO Rho (Ras homolo 99.9 1.8E-22 3.9E-27 158.8 14.3 106 103-209 1-108 (174)
73 KOG1673 Ras GTPases [General f 99.9 3.4E-23 7.4E-28 159.2 9.7 115 95-209 15-130 (205)
74 cd01861 Rab6 Rab6 subfamily. 99.9 2.7E-22 5.9E-27 155.5 13.3 108 101-208 1-110 (161)
75 cd04144 Ras2 Ras2 subfamily. 99.9 1.6E-22 3.5E-27 162.4 12.0 99 102-201 1-100 (190)
76 cd01873 RhoBTB RhoBTB subfamil 99.9 3.4E-22 7.3E-27 162.0 13.6 108 100-209 2-126 (195)
77 cd01892 Miro2 Miro2 subfamily. 99.9 4.4E-22 9.5E-27 157.2 13.8 109 99-208 3-113 (169)
78 cd04126 Rab20 Rab20 subfamily. 99.9 3E-22 6.5E-27 165.3 13.2 104 101-208 1-105 (220)
79 cd04140 ARHI_like ARHI subfami 99.9 5.2E-22 1.1E-26 155.5 13.5 99 101-200 2-101 (165)
80 cd01860 Rab5_related Rab5-rela 99.9 5.3E-22 1.1E-26 154.2 13.2 104 100-203 1-105 (163)
81 PLN03108 Rab family protein; P 99.9 4.8E-22 1E-26 162.5 13.1 109 100-208 6-116 (210)
82 smart00175 RAB Rab subfamily o 99.9 7.3E-22 1.6E-26 153.2 13.2 108 101-208 1-110 (164)
83 cd04135 Tc10 TC10 subfamily. 99.9 2.4E-21 5.1E-26 152.4 15.0 108 101-209 1-110 (174)
84 cd04142 RRP22 RRP22 subfamily. 99.9 1.5E-21 3.2E-26 158.6 14.1 101 101-201 1-110 (198)
85 smart00173 RAS Ras subfamily o 99.9 1.3E-21 2.9E-26 152.2 13.0 99 101-200 1-100 (164)
86 PLN03118 Rab family protein; P 99.9 2.4E-21 5.3E-26 158.1 15.0 103 99-201 13-116 (211)
87 PTZ00132 GTP-binding nuclear p 99.9 2.1E-21 4.6E-26 158.8 14.6 113 96-208 5-118 (215)
88 cd01870 RhoA_like RhoA-like su 99.9 2.6E-21 5.7E-26 152.2 14.3 108 101-209 2-111 (175)
89 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3E-21 6.6E-26 149.9 13.6 100 100-200 2-102 (164)
90 cd01862 Rab7 Rab7 subfamily. 99.9 3.1E-21 6.8E-26 150.9 13.3 101 101-201 1-102 (172)
91 cd04123 Rab21 Rab21 subfamily. 99.9 3.8E-21 8.3E-26 148.4 13.3 106 101-206 1-107 (162)
92 KOG4252 GTP-binding protein [S 99.9 2.7E-23 5.8E-28 163.2 0.9 111 99-209 19-130 (246)
93 cd01863 Rab18 Rab18 subfamily. 99.9 5.9E-21 1.3E-25 148.1 13.9 101 101-201 1-102 (161)
94 cd04146 RERG_RasL11_like RERG/ 99.9 5E-21 1.1E-25 149.6 12.2 106 102-208 1-111 (165)
95 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.9E-21 6.3E-26 151.8 10.8 102 103-208 2-104 (164)
96 cd04114 Rab30 Rab30 subfamily. 99.9 1.4E-20 3.1E-25 147.1 14.4 108 99-206 6-114 (169)
97 smart00177 ARF ARF-like small 99.9 4.1E-21 8.9E-26 152.5 11.2 106 99-208 12-119 (175)
98 cd04177 RSR1 RSR1 subgroup. R 99.9 1.3E-20 2.8E-25 148.0 13.9 100 100-200 1-101 (168)
99 cd04149 Arf6 Arf6 subfamily. 99.9 3.2E-21 7E-26 152.2 10.5 106 99-208 8-115 (168)
100 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4.1E-21 8.9E-26 150.1 10.9 95 101-199 1-95 (159)
101 cd04148 RGK RGK subfamily. Th 99.9 1.1E-20 2.4E-25 155.8 13.4 106 101-208 1-111 (221)
102 KOG0395 Ras-related GTPase [Ge 99.9 4E-21 8.7E-26 155.9 10.4 109 99-208 2-112 (196)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 8E-21 1.7E-25 151.8 11.7 102 99-200 2-104 (183)
104 cd01893 Miro1 Miro1 subfamily. 99.8 1.4E-20 3.1E-25 147.6 12.8 107 101-208 1-108 (166)
105 PLN00223 ADP-ribosylation fact 99.8 5.5E-21 1.2E-25 152.9 9.7 106 99-208 16-123 (181)
106 PF08477 Miro: Miro-like prote 99.8 1.7E-20 3.7E-25 139.0 11.5 108 102-209 1-114 (119)
107 cd00157 Rho Rho (Ras homology) 99.8 6.4E-20 1.4E-24 143.3 15.0 108 101-209 1-110 (171)
108 PTZ00133 ADP-ribosylation fact 99.8 1.5E-20 3.3E-25 150.3 10.9 97 99-199 16-112 (182)
109 cd00154 Rab Rab family. Rab G 99.8 4E-20 8.7E-25 141.2 12.7 108 101-208 1-110 (159)
110 cd04129 Rho2 Rho2 subfamily. 99.8 1.3E-19 2.7E-24 145.3 14.5 108 101-209 2-111 (187)
111 cd04147 Ras_dva Ras-dva subfam 99.8 6.1E-20 1.3E-24 148.4 12.5 99 102-201 1-100 (198)
112 COG1100 GTPase SAR1 and relate 99.8 5.1E-20 1.1E-24 150.1 11.6 109 100-208 5-116 (219)
113 cd04158 ARD1 ARD1 subfamily. 99.8 4.5E-20 9.8E-25 145.4 10.8 95 102-200 1-95 (169)
114 cd04139 RalA_RalB RalA/RalB su 99.8 2.6E-19 5.7E-24 138.6 13.0 99 101-200 1-100 (164)
115 cd04154 Arl2 Arl2 subfamily. 99.8 2E-19 4.3E-24 142.0 11.2 107 98-208 12-120 (173)
116 cd00876 Ras Ras family. The R 99.8 3.1E-19 6.7E-24 137.5 11.7 106 102-208 1-109 (160)
117 cd04161 Arl2l1_Arl13_like Arl2 99.8 2E-19 4.3E-24 141.6 10.6 102 102-208 1-105 (167)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.8 4.9E-19 1.1E-23 137.2 11.0 96 102-200 1-96 (160)
119 cd04137 RheB Rheb (Ras Homolog 99.8 1.2E-18 2.6E-23 137.9 12.4 99 101-200 2-101 (180)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 7.5E-19 1.6E-23 139.1 10.9 97 100-200 15-111 (174)
121 cd04157 Arl6 Arl6 subfamily. 99.8 7.9E-19 1.7E-23 135.9 10.0 95 102-200 1-97 (162)
122 cd04151 Arl1 Arl1 subfamily. 99.8 1.1E-18 2.5E-23 135.4 9.6 93 102-198 1-93 (158)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.8E-18 8.3E-23 132.0 11.0 95 102-200 1-95 (158)
124 smart00178 SAR Sar1p-like memb 99.7 1E-17 2.2E-22 134.1 10.7 97 99-199 16-112 (184)
125 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 9.5E-18 2.1E-22 132.9 9.8 111 98-208 8-119 (216)
126 cd00879 Sar1 Sar1 subfamily. 99.7 1.8E-17 4E-22 132.4 11.2 98 99-200 18-115 (190)
127 cd04159 Arl10_like Arl10-like 99.7 2.8E-17 6E-22 125.6 10.9 94 102-199 1-95 (159)
128 KOG0070 GTP-binding ADP-ribosy 99.7 1.3E-17 2.7E-22 131.8 8.8 102 96-201 13-114 (181)
129 PF00025 Arf: ADP-ribosylation 99.7 2.9E-17 6.3E-22 130.7 10.5 99 98-200 12-110 (175)
130 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.9E-17 8.5E-22 127.3 10.4 95 102-200 1-102 (167)
131 TIGR00231 small_GTP small GTP- 99.7 2.1E-16 4.5E-21 119.8 12.1 109 100-208 1-113 (161)
132 PTZ00099 rab6; Provisional 99.7 3.6E-16 7.9E-21 124.7 10.6 86 123-208 3-90 (176)
133 cd04155 Arl3 Arl3 subfamily. 99.7 6.2E-16 1.4E-20 121.3 11.0 98 99-200 13-110 (173)
134 KOG0073 GTP-binding ADP-ribosy 99.7 9.5E-16 2.1E-20 119.0 10.8 97 98-198 14-110 (185)
135 cd01890 LepA LepA subfamily. 99.6 7.7E-16 1.7E-20 121.4 9.7 96 102-197 2-116 (179)
136 cd04105 SR_beta Signal recogni 99.6 1.5E-15 3.1E-20 123.8 10.8 97 102-198 2-100 (203)
137 KOG0071 GTP-binding ADP-ribosy 99.6 1.7E-15 3.7E-20 115.0 8.8 97 99-199 16-112 (180)
138 KOG4423 GTP-binding protein-li 99.6 5.1E-18 1.1E-22 134.2 -5.1 103 98-200 23-127 (229)
139 cd01898 Obg Obg subfamily. Th 99.6 1.2E-14 2.6E-19 113.4 10.5 99 102-201 2-109 (170)
140 KOG3883 Ras family small GTPas 99.6 1.5E-14 3.4E-19 111.3 10.6 101 99-200 8-113 (198)
141 cd01891 TypA_BipA TypA (tyrosi 99.6 4.1E-15 9E-20 119.7 7.9 98 101-199 3-115 (194)
142 cd04171 SelB SelB subfamily. 99.6 1.1E-14 2.4E-19 112.5 9.9 89 102-191 2-97 (164)
143 cd01897 NOG NOG1 is a nucleola 99.6 3E-14 6.4E-19 111.1 11.6 103 102-208 2-118 (168)
144 TIGR02528 EutP ethanolamine ut 99.6 2.5E-15 5.4E-20 114.5 4.3 81 101-196 1-86 (142)
145 cd00882 Ras_like_GTPase Ras-li 99.5 4.7E-14 1E-18 105.4 10.4 88 105-193 1-90 (157)
146 KOG0074 GTP-binding ADP-ribosy 99.5 4.8E-14 1E-18 107.3 10.4 99 98-199 15-113 (185)
147 cd01878 HflX HflX subfamily. 99.5 2.8E-14 6.1E-19 115.4 9.6 100 100-201 41-150 (204)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 8.1E-14 1.8E-18 108.4 10.0 83 102-184 2-86 (168)
149 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.4E-13 3.1E-18 124.3 12.0 97 99-199 202-308 (442)
150 TIGR03156 GTP_HflX GTP-binding 99.5 1.6E-13 3.4E-18 120.6 10.0 100 100-201 189-298 (351)
151 cd01879 FeoB Ferrous iron tran 99.5 4.6E-13 9.9E-18 102.9 10.0 91 105-200 1-100 (158)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1E-12 2.2E-17 100.5 11.2 93 101-195 2-104 (157)
153 KOG1707 Predicted Ras related/ 99.4 2.2E-13 4.8E-18 123.5 8.1 112 96-208 5-120 (625)
154 PRK05291 trmE tRNA modificatio 99.4 1.3E-12 2.9E-17 118.3 11.3 94 100-195 215-318 (449)
155 PRK03003 GTP-binding protein D 99.4 6.1E-13 1.3E-17 121.2 9.1 97 100-199 38-144 (472)
156 PRK04213 GTP-binding protein; 99.4 8.8E-14 1.9E-18 112.2 3.1 78 99-182 8-101 (201)
157 KOG0075 GTP-binding ADP-ribosy 99.4 1.6E-13 3.4E-18 105.1 4.1 98 99-200 19-117 (186)
158 cd01881 Obg_like The Obg-like 99.4 1.3E-12 2.8E-17 102.1 9.5 96 105-201 1-110 (176)
159 TIGR01393 lepA GTP-binding pro 99.4 1.7E-12 3.8E-17 121.1 9.9 98 101-198 4-120 (595)
160 PRK03003 GTP-binding protein D 99.4 1.9E-12 4.1E-17 118.0 9.8 98 99-199 210-320 (472)
161 PRK15494 era GTPase Era; Provi 99.4 2.7E-12 5.8E-17 112.4 9.7 99 98-200 50-159 (339)
162 PRK11058 GTPase HflX; Provisio 99.4 3.7E-12 8.1E-17 114.6 10.8 99 101-200 198-305 (426)
163 PRK00093 GTP-binding protein D 99.3 5.3E-12 1.2E-16 113.6 10.8 94 101-196 2-107 (435)
164 cd04167 Snu114p Snu114p subfam 99.3 4.3E-12 9.3E-17 103.8 9.1 97 102-199 2-121 (213)
165 PRK12299 obgE GTPase CgtA; Rev 99.3 9.8E-12 2.1E-16 108.7 10.9 101 101-202 159-267 (335)
166 TIGR03598 GTPase_YsxC ribosome 99.3 6.8E-12 1.5E-16 99.7 9.1 90 98-190 16-119 (179)
167 TIGR02729 Obg_CgtA Obg family 99.3 1.2E-11 2.6E-16 107.9 11.1 101 100-201 157-268 (329)
168 cd01895 EngA2 EngA2 subfamily. 99.3 2.1E-11 4.6E-16 94.4 11.2 96 100-198 2-110 (174)
169 cd01894 EngA1 EngA1 subfamily. 99.3 1E-11 2.2E-16 95.1 9.2 84 104-189 1-94 (157)
170 cd00881 GTP_translation_factor 99.3 7.8E-12 1.7E-16 98.7 8.8 97 102-199 1-112 (189)
171 smart00010 small_GTPase Small 99.3 1.1E-11 2.3E-16 91.6 8.5 78 101-207 1-80 (124)
172 cd01850 CDC_Septin CDC/Septin. 99.3 1.7E-11 3.6E-16 104.6 10.5 61 99-159 3-74 (276)
173 KOG0076 GTP-binding ADP-ribosy 99.3 1.9E-12 4.1E-17 101.6 4.3 100 97-200 14-121 (197)
174 cd01889 SelB_euk SelB subfamil 99.3 1.3E-11 2.8E-16 99.2 8.2 93 101-193 1-113 (192)
175 cd04163 Era Era subfamily. Er 99.3 3.1E-11 6.8E-16 92.4 9.9 83 100-184 3-95 (168)
176 PRK00454 engB GTP-binding prot 99.3 2.7E-11 6E-16 96.8 8.9 87 99-188 23-123 (196)
177 TIGR03594 GTPase_EngA ribosome 99.3 6.3E-11 1.4E-15 106.3 12.1 98 99-199 171-281 (429)
178 TIGR00436 era GTP-binding prot 99.2 3.1E-11 6.8E-16 102.3 9.2 94 102-200 2-106 (270)
179 TIGR00487 IF-2 translation ini 99.2 9.8E-11 2.1E-15 109.2 12.5 92 98-190 85-180 (587)
180 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 5.7E-11 1.2E-15 98.7 9.7 107 102-208 1-116 (232)
181 cd01896 DRG The developmentall 99.2 1.3E-10 2.8E-15 96.7 11.1 94 102-197 2-104 (233)
182 PRK12297 obgE GTPase CgtA; Rev 99.2 1.6E-10 3.4E-15 103.9 11.5 99 101-202 159-270 (424)
183 TIGR03594 GTPase_EngA ribosome 99.2 1.1E-10 2.3E-15 104.8 9.8 92 102-195 1-104 (429)
184 KOG0072 GTP-binding ADP-ribosy 99.2 1.7E-11 3.6E-16 93.8 3.7 96 99-198 17-113 (182)
185 cd04168 TetM_like Tet(M)-like 99.2 7.6E-11 1.7E-15 98.4 7.9 98 102-200 1-115 (237)
186 PRK09518 bifunctional cytidyla 99.2 9.7E-11 2.1E-15 111.7 9.4 97 100-199 450-559 (712)
187 PRK15467 ethanolamine utilizat 99.2 3.5E-11 7.5E-16 94.2 5.3 82 102-197 3-88 (158)
188 TIGR00491 aIF-2 translation in 99.2 1.3E-10 2.7E-15 108.4 9.4 93 101-193 5-117 (590)
189 CHL00189 infB translation init 99.2 1.3E-10 2.8E-15 110.4 9.7 93 99-191 243-341 (742)
190 TIGR00475 selB selenocysteine- 99.2 1.9E-10 4.2E-15 107.3 10.5 89 101-191 1-96 (581)
191 cd01876 YihA_EngB The YihA (En 99.2 1.3E-10 2.9E-15 89.2 7.9 93 102-197 1-109 (170)
192 PRK09518 bifunctional cytidyla 99.1 2.2E-10 4.7E-15 109.3 10.5 97 99-199 274-381 (712)
193 PRK05306 infB translation init 99.1 4.7E-10 1E-14 107.4 12.8 92 97-190 287-382 (787)
194 PF01926 MMR_HSR1: 50S ribosom 99.1 7.2E-10 1.6E-14 81.8 11.1 91 102-194 1-104 (116)
195 COG2229 Predicted GTPase [Gene 99.1 2.4E-10 5.3E-15 90.6 8.8 104 95-202 5-121 (187)
196 cd00880 Era_like Era (E. coli 99.1 4.2E-10 9E-15 85.0 9.4 93 105-199 1-102 (163)
197 PRK05433 GTP-binding protein L 99.1 2.2E-10 4.9E-15 107.1 9.2 97 101-197 8-123 (600)
198 PRK10218 GTP-binding protein; 99.1 4.2E-10 9E-15 105.3 10.8 100 100-200 5-119 (607)
199 PRK00089 era GTPase Era; Revie 99.1 6.3E-10 1.4E-14 95.1 10.0 82 99-183 4-96 (292)
200 cd04169 RF3 RF3 subfamily. Pe 99.1 6.2E-10 1.4E-14 94.5 9.6 98 101-199 3-121 (267)
201 cd04104 p47_IIGP_like p47 (47- 99.1 6.6E-10 1.4E-14 89.9 8.7 97 100-200 1-106 (197)
202 PRK04004 translation initiatio 99.0 9.4E-10 2E-14 102.7 10.1 95 99-193 5-119 (586)
203 TIGR00483 EF-1_alpha translati 99.0 5.4E-10 1.2E-14 100.6 8.1 89 97-187 4-124 (426)
204 PRK12296 obgE GTPase CgtA; Rev 99.0 1.3E-09 2.7E-14 99.6 10.3 100 100-201 159-270 (500)
205 TIGR00437 feoB ferrous iron tr 99.0 1.4E-09 3.1E-14 101.7 10.4 88 107-199 1-97 (591)
206 KOG0077 Vesicle coat complex C 99.0 3.5E-10 7.6E-15 88.4 5.2 98 99-200 19-116 (193)
207 PRK00093 GTP-binding protein D 99.0 2E-09 4.3E-14 96.9 10.9 98 99-199 172-282 (435)
208 cd01899 Ygr210 Ygr210 subfamil 99.0 1.9E-09 4.1E-14 93.7 9.9 81 103-183 1-111 (318)
209 PRK12317 elongation factor 1-a 99.0 2.1E-09 4.6E-14 96.7 9.7 87 98-184 4-120 (425)
210 PRK09554 feoB ferrous iron tra 99.0 4.1E-09 9E-14 101.1 11.7 97 99-200 2-111 (772)
211 cd01885 EF2 EF2 (for archaea a 99.0 3.1E-09 6.8E-14 87.9 8.7 92 102-193 2-118 (222)
212 PRK12298 obgE GTPase CgtA; Rev 98.9 4.6E-09 1E-13 93.6 10.0 98 101-201 160-270 (390)
213 cd04166 CysN_ATPS CysN_ATPS su 98.9 2.1E-09 4.6E-14 87.6 7.2 83 102-184 1-113 (208)
214 TIGR01394 TypA_BipA GTP-bindin 98.9 2.7E-09 5.8E-14 99.8 8.7 99 102-201 3-116 (594)
215 PF09439 SRPRB: Signal recogni 98.9 1.3E-09 2.9E-14 87.3 5.6 105 101-208 4-116 (181)
216 PRK13351 elongation factor G; 98.9 2.1E-09 4.6E-14 102.2 7.2 100 99-199 7-123 (687)
217 cd04170 EF-G_bact Elongation f 98.9 3.7E-09 8.1E-14 89.4 7.4 92 102-193 1-109 (268)
218 PRK09602 translation-associate 98.9 1.3E-08 2.9E-13 90.9 10.7 82 101-182 2-113 (396)
219 PF02421 FeoB_N: Ferrous iron 98.9 3.3E-08 7.2E-13 77.5 11.0 95 101-200 1-104 (156)
220 cd01888 eIF2_gamma eIF2-gamma 98.9 8.9E-09 1.9E-13 83.7 7.8 93 101-193 1-132 (203)
221 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.4E-08 3E-13 87.6 9.2 85 97-183 35-130 (313)
222 PRK00741 prfC peptide chain re 98.8 8.5E-09 1.8E-13 95.2 8.1 100 99-199 9-129 (526)
223 TIGR00503 prfC peptide chain r 98.8 1.6E-08 3.5E-13 93.4 8.9 100 99-199 10-130 (527)
224 COG0486 ThdF Predicted GTPase 98.8 5.1E-08 1.1E-12 87.3 10.9 85 98-184 215-309 (454)
225 TIGR00490 aEF-2 translation el 98.8 2E-08 4.4E-13 96.0 8.1 86 99-184 18-122 (720)
226 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 1.3E-07 2.9E-12 76.2 9.8 81 101-183 1-95 (196)
227 cd01853 Toc34_like Toc34-like 98.7 1.4E-07 3.1E-12 79.3 10.2 84 98-183 29-126 (249)
228 TIGR03680 eif2g_arch translati 98.7 3.3E-08 7.1E-13 88.7 6.2 85 99-183 3-115 (406)
229 PRK10512 selenocysteinyl-tRNA- 98.7 1.2E-07 2.7E-12 89.1 10.3 89 102-191 2-97 (614)
230 cd01883 EF1_alpha Eukaryotic e 98.6 7.6E-08 1.6E-12 79.1 6.6 83 102-184 1-113 (219)
231 TIGR00485 EF-Tu translation el 98.6 1.6E-07 3.5E-12 83.9 9.0 87 97-183 9-110 (394)
232 cd00066 G-alpha G protein alph 98.6 2.5E-07 5.5E-12 80.4 9.9 53 147-199 160-222 (317)
233 cd01886 EF-G Elongation factor 98.6 1.6E-07 3.4E-12 79.9 7.5 83 102-184 1-100 (270)
234 cd01884 EF_Tu EF-Tu subfamily. 98.6 2.4E-07 5.3E-12 75.1 8.3 85 100-184 2-101 (195)
235 PF00009 GTP_EFTU: Elongation 98.6 9.7E-08 2.1E-12 76.4 5.8 101 100-201 3-122 (188)
236 KOG1707 Predicted Ras related/ 98.6 6.3E-07 1.4E-11 82.1 11.5 105 94-200 419-524 (625)
237 KOG3886 GTP-binding protein [S 98.6 7E-08 1.5E-12 79.5 4.4 106 100-208 4-121 (295)
238 PRK12735 elongation factor Tu; 98.5 4.1E-07 8.9E-12 81.3 9.3 87 98-184 10-111 (396)
239 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 2.3E-07 5E-12 71.0 6.3 54 102-158 85-138 (141)
240 PRK04000 translation initiatio 98.5 2.3E-07 4.9E-12 83.4 7.2 95 97-191 6-132 (411)
241 COG1160 Predicted GTPases [Gen 98.5 5.8E-07 1.3E-11 80.4 9.6 81 101-183 4-95 (444)
242 KOG1423 Ras-like GTPase ERA [C 98.5 7.4E-07 1.6E-11 76.3 9.5 92 90-184 62-168 (379)
243 TIGR00484 EF-G translation elo 98.5 3.2E-07 6.9E-12 87.5 8.2 100 100-200 10-126 (689)
244 smart00275 G_alpha G protein a 98.5 5.4E-07 1.2E-11 79.1 8.9 53 147-199 183-245 (342)
245 KOG0705 GTPase-activating prot 98.5 9.6E-08 2.1E-12 86.8 4.1 100 95-200 25-124 (749)
246 cd04165 GTPBP1_like GTPBP1-lik 98.5 4.7E-07 1E-11 75.0 7.9 97 102-201 1-138 (224)
247 COG3596 Predicted GTPase [Gene 98.5 1.9E-07 4.2E-12 78.7 5.2 101 97-200 36-145 (296)
248 COG1163 DRG Predicted GTPase [ 98.5 1.4E-06 3E-11 75.1 10.3 96 100-197 63-167 (365)
249 PLN03126 Elongation factor Tu; 98.4 8.9E-07 1.9E-11 81.0 9.0 104 97-201 78-196 (478)
250 PRK12736 elongation factor Tu; 98.4 1.1E-06 2.4E-11 78.6 8.8 87 97-183 9-110 (394)
251 COG1159 Era GTPase [General fu 98.4 1.8E-06 3.8E-11 73.7 9.0 84 98-184 4-98 (298)
252 cd01859 MJ1464 MJ1464. This f 98.4 9.8E-07 2.1E-11 68.4 6.9 55 100-157 101-155 (156)
253 COG1084 Predicted GTPase [Gene 98.4 3.7E-06 8.1E-11 72.6 10.6 99 100-202 168-280 (346)
254 PF04548 AIG1: AIG1 family; I 98.4 1.9E-06 4.1E-11 70.6 8.1 80 101-182 1-94 (212)
255 PLN00043 elongation factor 1-a 98.3 2.3E-06 5E-11 77.7 9.2 91 97-188 4-124 (447)
256 PF00735 Septin: Septin; Inte 98.3 2.4E-06 5.1E-11 73.2 8.7 60 99-158 3-73 (281)
257 CHL00071 tufA elongation facto 98.3 2.6E-06 5.7E-11 76.5 9.3 88 97-184 9-111 (409)
258 KOG0090 Signal recognition par 98.3 9.6E-07 2.1E-11 71.9 5.8 103 102-208 40-149 (238)
259 KOG1191 Mitochondrial GTPase [ 98.3 1.7E-06 3.7E-11 78.0 7.9 98 99-198 267-377 (531)
260 cd01856 YlqF YlqF. Proteins o 98.3 1.6E-06 3.5E-11 68.4 6.6 57 99-158 114-170 (171)
261 PTZ00258 GTP-binding protein; 98.3 5.3E-06 1.2E-10 73.9 10.3 85 98-182 19-126 (390)
262 PF10662 PduV-EutP: Ethanolami 98.3 1E-06 2.2E-11 68.0 4.7 72 102-186 3-78 (143)
263 PF05783 DLIC: Dynein light in 98.3 5.9E-06 1.3E-10 75.4 10.0 99 100-200 25-130 (472)
264 PRK00049 elongation factor Tu; 98.3 5.4E-06 1.2E-10 74.2 9.4 102 98-200 10-126 (396)
265 PRK12740 elongation factor G; 98.2 2.4E-06 5.2E-11 81.2 6.4 89 106-194 1-106 (668)
266 PRK05124 cysN sulfate adenylyl 98.2 5.1E-06 1.1E-10 76.0 8.2 87 98-184 25-143 (474)
267 TIGR00993 3a0901s04IAP86 chlor 98.2 8.5E-06 1.8E-10 76.5 9.7 97 100-200 118-230 (763)
268 COG1160 Predicted GTPases [Gen 98.2 1.7E-05 3.7E-10 71.2 11.2 89 99-189 177-278 (444)
269 TIGR02034 CysN sulfate adenyly 98.2 3.1E-06 6.8E-11 76.0 6.5 84 101-184 1-116 (406)
270 PRK09601 GTP-binding protein Y 98.2 2.1E-05 4.6E-10 69.5 11.4 82 101-182 3-107 (364)
271 cd01900 YchF YchF subfamily. 98.2 6.7E-06 1.5E-10 70.1 7.5 80 103-182 1-103 (274)
272 PRK05506 bifunctional sulfate 98.2 5.5E-06 1.2E-10 78.3 7.6 86 99-184 23-140 (632)
273 PLN03127 Elongation factor Tu; 98.1 1.8E-05 3.9E-10 71.9 10.4 88 97-184 58-160 (447)
274 PF00350 Dynamin_N: Dynamin fa 98.1 1.8E-05 4E-10 61.5 8.9 55 149-203 102-160 (168)
275 PRK12739 elongation factor G; 98.1 6.6E-06 1.4E-10 78.5 7.0 86 99-186 7-111 (691)
276 PF05049 IIGP: Interferon-indu 98.1 6.5E-06 1.4E-10 72.9 5.9 97 99-200 34-140 (376)
277 PTZ00141 elongation factor 1- 98.1 1.8E-05 4E-10 71.9 8.9 88 97-184 4-121 (446)
278 KOG3905 Dynein light intermedi 98.1 2E-05 4.3E-10 68.3 8.5 100 100-201 52-158 (473)
279 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.3E-05 2.9E-10 62.2 7.0 55 100-157 102-156 (157)
280 TIGR03596 GTPase_YlqF ribosome 98.0 1.8E-05 3.9E-10 67.4 8.0 57 99-158 117-173 (276)
281 cd04178 Nucleostemin_like Nucl 98.0 1.7E-05 3.7E-10 63.0 6.6 56 99-157 116-171 (172)
282 PRK09563 rbgA GTPase YlqF; Rev 98.0 2.7E-05 5.8E-10 66.8 7.7 58 99-159 120-177 (287)
283 PRK00007 elongation factor G; 97.9 2.8E-05 6.1E-10 74.3 7.5 94 100-193 10-120 (693)
284 COG2262 HflX GTPases [General 97.9 0.00012 2.7E-09 64.9 10.6 101 99-200 191-300 (411)
285 COG0370 FeoB Fe2+ transport sy 97.9 8.8E-05 1.9E-09 69.5 9.9 86 99-186 2-96 (653)
286 COG5019 CDC3 Septin family pro 97.9 8.4E-05 1.8E-09 65.2 9.1 80 98-196 21-111 (373)
287 COG0218 Predicted GTPase [Gene 97.9 4.1E-05 8.9E-10 62.0 6.5 85 99-186 23-121 (200)
288 cd01882 BMS1 Bms1. Bms1 is an 97.8 0.00012 2.5E-09 60.6 8.8 79 99-185 38-117 (225)
289 KOG2655 Septin family protein 97.8 9.2E-05 2E-09 65.1 8.1 62 99-160 20-91 (366)
290 PRK07560 elongation factor EF- 97.8 8.6E-05 1.9E-09 71.4 8.7 96 100-195 20-134 (731)
291 cd01855 YqeH YqeH. YqeH is an 97.8 4.8E-05 1E-09 60.9 5.7 54 101-157 128-189 (190)
292 PTZ00416 elongation factor 2; 97.8 8.4E-05 1.8E-09 72.5 8.4 100 100-200 19-143 (836)
293 PRK14845 translation initiatio 97.7 8E-05 1.7E-09 73.7 7.6 78 111-192 472-573 (1049)
294 COG1161 Predicted GTPases [Gen 97.7 0.00011 2.3E-09 64.2 6.7 58 98-158 130-187 (322)
295 PLN00116 translation elongatio 97.6 0.00012 2.7E-09 71.4 7.1 96 100-195 19-145 (843)
296 cd01851 GBP Guanylate-binding 97.6 0.00031 6.8E-09 58.1 8.5 84 100-184 7-104 (224)
297 PRK13768 GTPase; Provisional 97.6 9.5E-05 2.1E-09 62.3 5.1 41 149-189 98-146 (253)
298 KOG1486 GTP-binding protein DR 97.6 0.00086 1.9E-08 56.5 10.5 96 100-197 62-166 (364)
299 KOG1547 Septin CDC10 and relat 97.6 0.00035 7.7E-09 58.3 8.0 61 100-160 46-116 (336)
300 cd01849 YlqF_related_GTPase Yl 97.5 0.00039 8.4E-09 53.8 6.6 54 99-157 99-154 (155)
301 PRK12289 GTPase RsgA; Reviewed 97.4 0.00029 6.2E-09 62.2 5.8 24 102-125 174-197 (352)
302 KOG1489 Predicted GTP-binding 97.4 0.0016 3.5E-08 56.4 9.8 98 102-200 198-306 (366)
303 TIGR02836 spore_IV_A stage IV 97.4 0.0015 3.3E-08 58.8 9.8 103 100-202 17-181 (492)
304 COG5256 TEF1 Translation elong 97.3 0.00059 1.3E-08 60.8 6.8 88 97-184 4-121 (428)
305 PRK12288 GTPase RsgA; Reviewed 97.3 0.00026 5.7E-09 62.4 4.6 57 102-161 207-270 (347)
306 KOG4273 Uncharacterized conser 97.3 0.00086 1.9E-08 56.4 7.3 92 102-195 6-102 (418)
307 PF03193 DUF258: Protein of un 97.3 0.00024 5.3E-09 55.9 3.9 24 101-124 36-59 (161)
308 KOG0082 G-protein alpha subuni 97.3 0.00028 6.1E-09 62.0 4.6 38 147-184 194-231 (354)
309 TIGR00092 GTP-binding protein 97.3 0.00083 1.8E-08 59.6 7.6 82 101-182 3-108 (368)
310 TIGR00157 ribosome small subun 97.3 0.00058 1.3E-08 57.3 5.9 25 101-125 121-145 (245)
311 TIGR00157 ribosome small subun 97.2 0.00054 1.2E-08 57.4 5.4 41 159-199 24-65 (245)
312 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00052 1.1E-08 58.9 4.5 59 101-162 162-227 (287)
313 KOG3859 Septins (P-loop GTPase 97.2 0.0012 2.5E-08 56.4 6.4 61 99-159 41-106 (406)
314 COG1618 Predicted nucleotide k 97.1 0.0026 5.5E-08 50.2 7.4 56 99-156 4-59 (179)
315 KOG0468 U5 snRNP-specific prot 97.1 0.0026 5.7E-08 59.8 8.7 92 98-189 126-238 (971)
316 smart00053 DYNc Dynamin, GTPas 97.1 0.0028 6.1E-08 53.1 8.1 26 99-124 25-50 (240)
317 PRK13796 GTPase YqeH; Provisio 97.0 0.0013 2.9E-08 58.3 6.1 56 101-159 161-221 (365)
318 TIGR03597 GTPase_YqeH ribosome 97.0 0.0017 3.8E-08 57.4 6.5 55 101-160 155-216 (360)
319 PF03266 NTPase_1: NTPase; In 97.0 0.0013 2.8E-08 52.1 5.1 52 102-155 1-52 (168)
320 COG0012 Predicted GTPase, prob 97.0 0.0041 8.9E-08 54.9 8.4 83 100-182 2-108 (372)
321 COG0536 Obg Predicted GTPase [ 96.9 0.0067 1.4E-07 53.1 9.1 97 102-201 161-270 (369)
322 PRK00098 GTPase RsgA; Reviewed 96.9 0.0012 2.5E-08 57.0 4.5 26 100-125 164-189 (298)
323 KOG1491 Predicted GTP-binding 96.9 0.005 1.1E-07 53.8 8.0 87 97-183 17-126 (391)
324 COG0532 InfB Translation initi 96.9 0.0046 1E-07 56.7 8.0 91 101-191 6-101 (509)
325 KOG1954 Endocytosis/signaling 96.8 0.0044 9.6E-08 54.8 7.1 98 101-200 59-210 (532)
326 cd02042 ParA ParA and ParB of 96.8 0.0053 1.2E-07 43.9 6.5 82 103-195 2-84 (104)
327 COG4917 EutP Ethanolamine util 96.8 0.00076 1.6E-08 50.9 2.0 35 102-137 3-37 (148)
328 cd03222 ABC_RNaseL_inhibitor T 96.6 0.013 2.7E-07 46.8 7.7 91 100-200 25-120 (177)
329 COG1162 Predicted GTPases [Gen 96.5 0.0024 5.2E-08 55.0 3.5 23 101-123 165-187 (301)
330 KOG0462 Elongation factor-type 96.5 0.012 2.6E-07 54.3 7.9 96 102-197 62-174 (650)
331 PTZ00327 eukaryotic translatio 96.4 0.0097 2.1E-07 54.5 6.9 88 97-184 31-153 (460)
332 PF13207 AAA_17: AAA domain; P 96.4 0.0029 6.3E-08 46.4 2.9 22 102-123 1-22 (121)
333 PRK08118 topology modulation p 96.3 0.0032 7E-08 49.6 3.1 23 101-123 2-24 (167)
334 COG0481 LepA Membrane GTPase L 96.3 0.013 2.9E-07 53.3 7.2 100 98-199 9-127 (603)
335 PRK07261 topology modulation p 96.2 0.0046 1E-07 48.9 3.1 22 101-122 1-22 (171)
336 COG4108 PrfC Peptide chain rel 96.1 0.0067 1.4E-07 54.7 4.3 83 101-183 13-116 (528)
337 PF13671 AAA_33: AAA domain; P 96.1 0.0045 9.7E-08 46.6 2.8 19 103-121 2-20 (143)
338 COG0563 Adk Adenylate kinase a 96.1 0.005 1.1E-07 49.2 3.0 23 101-123 1-23 (178)
339 COG0480 FusA Translation elong 96.1 0.019 4.1E-07 55.1 7.2 101 99-199 9-127 (697)
340 PF13521 AAA_28: AAA domain; P 96.0 0.0038 8.2E-08 48.6 2.1 22 102-123 1-22 (163)
341 KOG1424 Predicted GTP-binding 96.0 0.0091 2E-07 54.7 4.6 56 100-158 314-369 (562)
342 KOG1145 Mitochondrial translat 96.0 0.018 4E-07 53.2 6.6 87 101-191 154-247 (683)
343 COG4615 PvdE ABC-type sideroph 95.9 0.0043 9.4E-08 55.5 2.0 82 103-199 352-433 (546)
344 KOG0066 eIF2-interacting prote 95.8 0.066 1.4E-06 48.8 9.1 104 100-204 613-754 (807)
345 cd02038 FleN-like FleN is a me 95.8 0.029 6.4E-07 42.6 6.0 91 104-200 4-94 (139)
346 KOG3887 Predicted small GTPase 95.8 0.018 3.8E-07 48.5 5.0 81 101-183 28-113 (347)
347 cd01983 Fer4_NifH The Fer4_Nif 95.8 0.081 1.7E-06 36.2 7.8 78 103-194 2-80 (99)
348 smart00382 AAA ATPases associa 95.8 0.01 2.3E-07 43.0 3.3 26 101-126 3-28 (148)
349 TIGR03348 VI_IcmF type VI secr 95.7 0.025 5.5E-07 57.4 7.0 98 101-202 112-241 (1169)
350 KOG1490 GTP-binding protein CR 95.7 0.0093 2E-07 54.6 3.5 107 100-208 168-286 (620)
351 PF00004 AAA: ATPase family as 95.7 0.009 1.9E-07 43.9 2.9 21 103-123 1-21 (132)
352 KOG0458 Elongation factor 1 al 95.7 0.066 1.4E-06 49.8 8.7 86 98-183 175-290 (603)
353 PRK14738 gmk guanylate kinase; 95.7 0.016 3.5E-07 47.1 4.3 25 99-123 12-36 (206)
354 PF07728 AAA_5: AAA domain (dy 95.6 0.0098 2.1E-07 44.8 2.8 20 103-122 2-21 (139)
355 PRK06217 hypothetical protein; 95.6 0.011 2.5E-07 46.9 3.1 23 101-123 2-24 (183)
356 PF13191 AAA_16: AAA ATPase do 95.6 0.0094 2E-07 46.6 2.5 23 100-122 24-46 (185)
357 PF13401 AAA_22: AAA domain; P 95.6 0.01 2.2E-07 43.9 2.6 23 102-124 6-28 (131)
358 PF00005 ABC_tran: ABC transpo 95.5 0.012 2.7E-07 43.9 2.9 22 102-123 13-34 (137)
359 PF05729 NACHT: NACHT domain 95.5 0.011 2.5E-07 45.0 2.8 21 103-123 3-23 (166)
360 cd02019 NK Nucleoside/nucleoti 95.5 0.015 3.2E-07 38.9 2.9 21 103-123 2-22 (69)
361 TIGR00150 HI0065_YjeE ATPase, 95.4 0.037 7.9E-07 42.2 5.2 22 102-123 24-45 (133)
362 cd00071 GMPK Guanosine monopho 95.4 0.015 3.2E-07 44.3 3.0 21 103-123 2-22 (137)
363 PRK10078 ribose 1,5-bisphospho 95.4 0.015 3.2E-07 46.4 3.1 22 102-123 4-25 (186)
364 PF13173 AAA_14: AAA domain 95.4 0.013 2.9E-07 43.8 2.6 24 102-125 4-27 (128)
365 TIGR02322 phosphon_PhnN phosph 95.3 0.014 3.1E-07 45.9 3.0 22 102-123 3-24 (179)
366 cd00009 AAA The AAA+ (ATPases 95.3 0.016 3.4E-07 42.6 2.9 24 101-124 20-43 (151)
367 TIGR03263 guanyl_kin guanylate 95.3 0.016 3.5E-07 45.5 3.1 22 102-123 3-24 (180)
368 PF13555 AAA_29: P-loop contai 95.3 0.02 4.4E-07 37.8 3.0 20 102-121 25-44 (62)
369 PF13238 AAA_18: AAA domain; P 95.3 0.016 3.5E-07 42.4 2.8 21 103-123 1-21 (129)
370 COG1126 GlnQ ABC-type polar am 95.2 0.017 3.7E-07 47.7 3.1 25 101-125 29-53 (240)
371 KOG0099 G protein subunit Galp 95.2 0.024 5.1E-07 48.2 4.0 37 147-183 201-237 (379)
372 TIGR00101 ureG urease accessor 95.2 0.019 4E-07 46.6 3.3 23 101-123 2-24 (199)
373 PRK14737 gmk guanylate kinase; 95.2 0.018 3.9E-07 46.2 3.1 22 102-123 6-27 (186)
374 PF04665 Pox_A32: Poxvirus A32 95.1 0.02 4.4E-07 48.0 3.2 25 99-123 12-36 (241)
375 COG5192 BMS1 GTP-binding prote 95.1 0.042 9.1E-07 51.3 5.4 77 99-182 68-144 (1077)
376 PRK13695 putative NTPase; Prov 95.0 0.022 4.8E-07 44.8 3.1 21 101-121 1-21 (174)
377 COG1217 TypA Predicted membran 95.0 0.076 1.7E-06 48.5 6.7 82 102-183 7-103 (603)
378 TIGR02868 CydC thiol reductant 95.0 0.035 7.6E-07 51.3 4.8 24 100-123 361-384 (529)
379 PF03205 MobB: Molybdopterin g 95.0 0.02 4.4E-07 43.9 2.7 21 102-122 2-22 (140)
380 COG1136 SalX ABC-type antimicr 95.0 0.021 4.6E-07 47.4 2.9 21 102-122 33-53 (226)
381 PRK03839 putative kinase; Prov 94.9 0.023 5E-07 44.8 3.1 22 102-123 2-23 (180)
382 COG1117 PstB ABC-type phosphat 94.9 0.049 1.1E-06 45.1 4.9 19 103-121 36-54 (253)
383 cd01129 PulE-GspE PulE/GspE Th 94.9 0.1 2.2E-06 44.3 7.1 85 102-191 82-168 (264)
384 TIGR01360 aden_kin_iso1 adenyl 94.9 0.023 5E-07 44.7 3.0 20 102-121 5-24 (188)
385 COG3842 PotA ABC-type spermidi 94.9 0.042 9E-07 48.6 4.8 23 103-125 34-56 (352)
386 PRK14530 adenylate kinase; Pro 94.9 0.026 5.6E-07 46.0 3.3 21 101-121 4-24 (215)
387 PRK08233 hypothetical protein; 94.9 0.028 6.1E-07 44.0 3.4 22 101-122 4-25 (182)
388 KOG0410 Predicted GTP binding 94.9 0.091 2E-06 46.0 6.6 98 100-198 178-284 (410)
389 PF01637 Arch_ATPase: Archaeal 94.9 0.021 4.5E-07 46.0 2.7 24 101-124 21-44 (234)
390 cd03111 CpaE_like This protein 94.9 0.11 2.3E-06 37.7 6.2 87 106-201 6-93 (106)
391 PRK00300 gmk guanylate kinase; 94.8 0.024 5.3E-07 45.5 3.0 24 100-123 5-28 (205)
392 cd00820 PEPCK_HprK Phosphoenol 94.8 0.026 5.7E-07 41.4 2.8 21 101-121 16-36 (107)
393 PRK05416 glmZ(sRNA)-inactivati 94.8 0.087 1.9E-06 45.3 6.5 74 102-200 8-83 (288)
394 PRK14532 adenylate kinase; Pro 94.8 0.026 5.7E-07 44.8 3.1 21 102-122 2-22 (188)
395 COG1116 TauB ABC-type nitrate/ 94.8 0.027 5.8E-07 47.3 3.1 23 102-124 31-53 (248)
396 cd02023 UMPK Uridine monophosp 94.6 0.029 6.2E-07 45.0 2.9 20 103-122 2-21 (198)
397 PRK02496 adk adenylate kinase; 94.6 0.033 7.2E-07 44.1 3.2 22 101-122 2-23 (184)
398 cd01428 ADK Adenylate kinase ( 94.6 0.028 6E-07 44.6 2.7 22 102-123 1-22 (194)
399 PRK14531 adenylate kinase; Pro 94.6 0.033 7.1E-07 44.3 3.1 23 100-122 2-24 (183)
400 PRK13949 shikimate kinase; Pro 94.6 0.033 7.1E-07 44.0 3.1 21 102-122 3-23 (169)
401 COG0194 Gmk Guanylate kinase [ 94.6 0.032 6.9E-07 45.0 3.0 24 101-124 5-28 (191)
402 PRK10418 nikD nickel transport 94.6 0.077 1.7E-06 44.3 5.5 23 102-124 31-53 (254)
403 PF13479 AAA_24: AAA domain 94.6 0.027 5.9E-07 46.0 2.7 22 99-120 2-23 (213)
404 cd03238 ABC_UvrA The excision 94.5 0.036 7.8E-07 44.2 3.2 22 100-121 21-42 (176)
405 PRK15093 antimicrobial peptide 94.5 0.077 1.7E-06 46.4 5.4 23 102-124 35-57 (330)
406 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.038 8.3E-07 44.8 3.3 23 101-123 31-53 (218)
407 PTZ00088 adenylate kinase 1; P 94.4 0.035 7.6E-07 46.1 3.1 23 100-122 6-28 (229)
408 TIGR00235 udk uridine kinase. 94.4 0.044 9.5E-07 44.4 3.5 23 100-122 6-28 (207)
409 TIGR01351 adk adenylate kinase 94.4 0.035 7.6E-07 45.1 2.9 21 102-122 1-21 (210)
410 KOG2484 GTPase [General functi 94.4 0.04 8.7E-07 49.2 3.4 58 98-158 250-307 (435)
411 PF00503 G-alpha: G-protein al 94.4 0.038 8.3E-07 49.3 3.4 22 99-120 57-78 (389)
412 COG3839 MalK ABC-type sugar tr 94.4 0.035 7.7E-07 48.8 3.1 23 103-125 32-54 (338)
413 TIGR03015 pepcterm_ATPase puta 94.4 0.035 7.5E-07 46.4 2.9 22 102-123 45-66 (269)
414 TIGR01313 therm_gnt_kin carboh 94.4 0.03 6.6E-07 43.3 2.4 21 103-123 1-21 (163)
415 PRK10646 ADP-binding protein; 94.4 0.13 2.9E-06 40.1 6.0 22 102-123 30-51 (153)
416 smart00072 GuKc Guanylate kina 94.3 0.041 8.8E-07 43.8 3.1 21 103-123 5-25 (184)
417 TIGR00960 3a0501s02 Type II (G 94.3 0.043 9.3E-07 44.5 3.3 23 101-123 30-52 (216)
418 PRK05480 uridine/cytidine kina 94.3 0.044 9.5E-07 44.4 3.2 24 99-122 5-28 (209)
419 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.039 8.5E-07 43.4 2.9 20 103-122 2-21 (183)
420 cd01131 PilT Pilus retraction 94.3 0.13 2.7E-06 41.6 5.9 21 103-123 4-24 (198)
421 PRK10751 molybdopterin-guanine 94.2 0.04 8.7E-07 43.9 2.9 22 101-122 7-28 (173)
422 COG3638 ABC-type phosphate/pho 94.2 0.039 8.4E-07 46.2 2.8 21 102-122 32-52 (258)
423 cd01128 rho_factor Transcripti 94.2 0.045 9.7E-07 46.1 3.3 25 100-124 16-40 (249)
424 cd03226 ABC_cobalt_CbiO_domain 94.2 0.046 1E-06 44.0 3.3 23 101-123 27-49 (205)
425 TIGR02315 ABC_phnC phosphonate 94.2 0.046 1E-06 45.1 3.3 22 102-123 30-51 (243)
426 PF00625 Guanylate_kin: Guanyl 94.2 0.041 9E-07 43.6 2.9 20 103-122 5-24 (183)
427 TIGR03608 L_ocin_972_ABC putat 94.2 0.048 1E-06 43.8 3.3 22 102-123 26-47 (206)
428 TIGR03797 NHPM_micro_ABC2 NHPM 94.2 0.073 1.6E-06 50.9 5.0 23 101-123 480-502 (686)
429 cd03225 ABC_cobalt_CbiO_domain 94.2 0.049 1.1E-06 44.0 3.3 22 102-123 29-50 (211)
430 COG1120 FepC ABC-type cobalami 94.1 0.045 9.6E-07 46.4 3.0 20 103-122 31-50 (258)
431 cd03292 ABC_FtsE_transporter F 94.1 0.051 1.1E-06 43.9 3.3 22 102-123 29-50 (214)
432 cd01393 recA_like RecA is a b 94.1 0.16 3.6E-06 41.2 6.3 24 101-124 20-43 (226)
433 cd03269 ABC_putative_ATPase Th 94.1 0.052 1.1E-06 43.8 3.3 22 102-123 28-49 (210)
434 cd01120 RecA-like_NTPases RecA 94.1 0.044 9.6E-07 41.4 2.8 21 103-123 2-22 (165)
435 cd03262 ABC_HisP_GlnQ_permease 94.1 0.052 1.1E-06 43.8 3.3 23 101-123 27-49 (213)
436 cd01130 VirB11-like_ATPase Typ 94.1 0.052 1.1E-06 43.3 3.2 24 100-123 25-48 (186)
437 cd03264 ABC_drug_resistance_li 94.1 0.047 1E-06 44.1 3.0 22 102-123 27-48 (211)
438 PRK00279 adk adenylate kinase; 94.1 0.051 1.1E-06 44.3 3.2 22 101-122 1-22 (215)
439 TIGR02673 FtsE cell division A 94.1 0.053 1.1E-06 43.9 3.3 23 101-123 29-51 (214)
440 KOG1487 GTP-binding protein DR 94.1 0.25 5.4E-06 42.1 7.3 89 100-191 59-156 (358)
441 cd01672 TMPK Thymidine monopho 94.0 0.046 9.9E-07 43.1 2.9 20 103-122 3-22 (200)
442 cd03259 ABC_Carb_Solutes_like 94.0 0.054 1.2E-06 43.9 3.3 22 102-123 28-49 (213)
443 TIGR01166 cbiO cobalt transpor 94.0 0.05 1.1E-06 43.3 3.1 22 102-123 20-41 (190)
444 cd03224 ABC_TM1139_LivF_branch 94.0 0.052 1.1E-06 44.1 3.2 23 101-123 27-49 (222)
445 COG4525 TauB ABC-type taurine 94.0 0.048 1E-06 44.7 2.9 21 102-122 33-53 (259)
446 cd03261 ABC_Org_Solvent_Resist 94.0 0.054 1.2E-06 44.6 3.3 22 102-123 28-49 (235)
447 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.055 1.2E-06 44.1 3.3 22 102-123 32-53 (220)
448 PF02367 UPF0079: Uncharacteri 94.0 0.066 1.4E-06 40.3 3.4 22 102-123 17-38 (123)
449 PHA00729 NTP-binding motif con 94.0 0.052 1.1E-06 45.1 3.1 23 101-123 18-40 (226)
450 cd03265 ABC_DrrA DrrA is the A 94.0 0.056 1.2E-06 44.0 3.3 23 101-123 27-49 (220)
451 PRK05057 aroK shikimate kinase 93.9 0.054 1.2E-06 42.8 3.1 22 101-122 5-26 (172)
452 PF00910 RNA_helicase: RNA hel 93.9 0.047 1E-06 39.6 2.5 21 103-123 1-21 (107)
453 PRK14528 adenylate kinase; Pro 93.9 0.058 1.3E-06 43.1 3.3 21 101-121 2-22 (186)
454 PRK11629 lolD lipoprotein tran 93.9 0.057 1.2E-06 44.4 3.3 22 102-123 37-58 (233)
455 PRK14257 phosphate ABC transpo 93.9 0.12 2.7E-06 45.1 5.5 23 102-124 110-132 (329)
456 cd03218 ABC_YhbG The ABC trans 93.9 0.058 1.3E-06 44.2 3.3 22 102-123 28-49 (232)
457 TIGR02211 LolD_lipo_ex lipopro 93.9 0.059 1.3E-06 43.8 3.3 23 102-124 33-55 (221)
458 cd02021 GntK Gluconate kinase 93.9 0.055 1.2E-06 41.2 3.0 21 103-123 2-22 (150)
459 cd03257 ABC_NikE_OppD_transpor 93.9 0.058 1.3E-06 44.0 3.2 23 101-123 32-54 (228)
460 cd03260 ABC_PstB_phosphate_tra 93.9 0.058 1.3E-06 44.1 3.3 24 101-124 27-50 (227)
461 cd03266 ABC_NatA_sodium_export 93.9 0.059 1.3E-06 43.7 3.3 23 101-123 32-54 (218)
462 PRK13540 cytochrome c biogenes 93.9 0.061 1.3E-06 43.2 3.3 24 101-124 28-51 (200)
463 PRK11176 lipid transporter ATP 93.9 0.085 1.8E-06 49.3 4.7 24 100-123 369-392 (582)
464 cd03256 ABC_PhnC_transporter A 93.9 0.054 1.2E-06 44.6 3.1 23 102-124 29-51 (241)
465 cd03219 ABC_Mj1267_LivG_branch 93.8 0.057 1.2E-06 44.4 3.2 23 101-123 27-49 (236)
466 TIGR01526 nadR_NMN_Atrans nico 93.8 0.054 1.2E-06 47.3 3.2 23 100-122 162-184 (325)
467 TIGR00073 hypB hydrogenase acc 93.8 0.056 1.2E-06 43.8 3.1 24 100-123 22-45 (207)
468 cd03301 ABC_MalK_N The N-termi 93.8 0.062 1.4E-06 43.4 3.3 23 102-124 28-50 (213)
469 cd03263 ABC_subfamily_A The AB 93.8 0.057 1.2E-06 43.9 3.1 22 102-123 30-51 (220)
470 KOG2485 Conserved ATP/GTP bind 93.8 0.087 1.9E-06 45.7 4.2 59 99-158 142-206 (335)
471 cd03229 ABC_Class3 This class 93.8 0.065 1.4E-06 42.3 3.3 23 101-123 27-49 (178)
472 PRK13541 cytochrome c biogenes 93.8 0.064 1.4E-06 42.9 3.3 23 102-124 28-50 (195)
473 PRK08099 bifunctional DNA-bind 93.8 0.057 1.2E-06 48.6 3.2 24 100-123 219-242 (399)
474 cd03258 ABC_MetN_methionine_tr 93.8 0.063 1.4E-06 44.1 3.3 23 101-123 32-54 (233)
475 COG1419 FlhF Flagellar GTP-bin 93.8 0.13 2.9E-06 46.1 5.5 99 100-200 203-338 (407)
476 cd03216 ABC_Carb_Monos_I This 93.8 0.068 1.5E-06 41.7 3.3 88 101-199 27-130 (163)
477 cd03235 ABC_Metallic_Cations A 93.7 0.061 1.3E-06 43.6 3.1 23 101-123 26-48 (213)
478 cd03268 ABC_BcrA_bacitracin_re 93.7 0.06 1.3E-06 43.4 3.1 23 101-123 27-49 (208)
479 PRK10908 cell division protein 93.7 0.066 1.4E-06 43.7 3.3 23 101-123 29-51 (222)
480 TIGR01425 SRP54_euk signal rec 93.7 0.18 3.8E-06 45.8 6.3 22 100-121 100-121 (429)
481 cd01123 Rad51_DMC1_radA Rad51_ 93.7 0.2 4.4E-06 40.9 6.3 23 101-123 20-42 (235)
482 PRK11248 tauB taurine transpor 93.7 0.064 1.4E-06 45.0 3.3 24 101-124 28-51 (255)
483 TIGR01189 ccmA heme ABC export 93.7 0.068 1.5E-06 42.8 3.3 24 101-124 27-50 (198)
484 cd03214 ABC_Iron-Siderophores_ 93.7 0.069 1.5E-06 42.2 3.3 23 101-123 26-48 (180)
485 PRK11022 dppD dipeptide transp 93.7 0.13 2.7E-06 45.0 5.2 22 102-123 35-56 (326)
486 cd02025 PanK Pantothenate kina 93.7 0.056 1.2E-06 44.5 2.8 20 103-122 2-21 (220)
487 COG0802 Predicted ATPase or ki 93.7 0.17 3.6E-06 39.4 5.2 22 102-123 27-48 (149)
488 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.065 1.4E-06 41.0 3.0 86 101-197 27-116 (144)
489 TIGR01978 sufC FeS assembly AT 93.6 0.067 1.5E-06 44.1 3.3 23 101-123 27-49 (243)
490 TIGR03796 NHPM_micro_ABC1 NHPM 93.6 0.098 2.1E-06 50.2 4.8 23 101-123 506-528 (710)
491 cd00227 CPT Chloramphenicol (C 93.6 0.061 1.3E-06 42.3 2.9 22 102-123 4-25 (175)
492 PRK15177 Vi polysaccharide exp 93.6 0.064 1.4E-06 43.8 3.0 24 101-124 14-37 (213)
493 cd03297 ABC_ModC_molybdenum_tr 93.6 0.065 1.4E-06 43.4 3.1 23 101-123 24-46 (214)
494 cd03296 ABC_CysA_sulfate_impor 93.6 0.07 1.5E-06 44.1 3.3 22 102-123 30-51 (239)
495 PRK11247 ssuB aliphatic sulfon 93.6 0.069 1.5E-06 45.0 3.3 22 102-123 40-61 (257)
496 TIGR03410 urea_trans_UrtE urea 93.6 0.069 1.5E-06 43.7 3.2 24 100-123 26-49 (230)
497 PRK06762 hypothetical protein; 93.6 0.065 1.4E-06 41.6 2.9 23 101-123 3-25 (166)
498 PRK06547 hypothetical protein; 93.6 0.078 1.7E-06 42.0 3.4 24 99-122 14-37 (172)
499 PRK10895 lipopolysaccharide AB 93.6 0.072 1.6E-06 44.0 3.3 24 101-124 30-53 (241)
500 TIGR00176 mobB molybdopterin-g 93.6 0.071 1.5E-06 41.5 3.1 20 103-122 2-21 (155)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-34 Score=225.61 Aligned_cols=108 Identities=23% Similarity=0.483 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.|||+++||+|||||||+.||.++.|. .+..|+|+||..+++.++|+.++|+||||+|||+|+.+..+||++|||||+|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~v 88 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFV 88 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEE
Confidence 899999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
||+|+++||+++..|+.|++++..+.++.
T Consensus 89 yDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~ 117 (205)
T KOG0084|consen 89 YDITKQESFNNVKRWIQEIDRYASENVPK 117 (205)
T ss_pred EEcccHHHhhhHHHHHHHhhhhccCCCCe
Confidence 99999999999999999999997766433
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.7e-32 Score=213.36 Aligned_cols=115 Identities=20% Similarity=0.488 Sum_probs=106.7
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccC
Q 028397 94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (209)
Q Consensus 94 ~~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a 172 (209)
.....+.+|++++||.+|||||||.||+.+.|. .|.+|+|+||..+++.+.+..+.|++|||+|||+|+.+.+.|++++
T Consensus 16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds 95 (221)
T KOG0094|consen 16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 95 (221)
T ss_pred cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC
Confidence 344566799999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhCCCC-ceEE
Q 028397 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQGP-NLMI 208 (209)
Q Consensus 173 ~~illvfDit~~~Sf~~i~~wl~~i~~~~~~~-~~iI 208 (209)
+++|+|||++|+.||++..+|++++++.+... ++|+
T Consensus 96 ~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~ 132 (221)
T KOG0094|consen 96 SVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIF 132 (221)
T ss_pred eEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEE
Confidence 99999999999999999999999999887664 4443
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-30 Score=204.82 Aligned_cols=111 Identities=25% Similarity=0.493 Sum_probs=104.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~-~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+|++++|+.+||||||+.||+.++|.+ ..+|+|..|.++++.+++..++|+||||+|||+|..+.++||++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 357999999999999999999999999995 5889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
+|||+|+.+||..++.|+.++++..++.++|.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~via 114 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIA 114 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 99999999999999999999999877655553
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-29 Score=203.70 Aligned_cols=112 Identities=23% Similarity=0.476 Sum_probs=106.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++||++||||||+.+|.++.|. .+..|+|+||..+++.+++..+++++|||+|||+|+.+...||++|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 34899999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+|||+||+.||+++..|+..|+++.+..+++||
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~L 122 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHASDDVVKIL 122 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 999999999999999999999999886666554
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=194.54 Aligned_cols=106 Identities=27% Similarity=0.524 Sum_probs=100.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~-t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+.+|..+.|.+..+ |+|.||..+.+.++|..+++.||||+|||+|+.+.+.||++|.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 347999999999999999999999999995555 6999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCC
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQG 203 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~ 203 (209)
+|||+|.++||.++..|++++..++.+
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn 115 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTN 115 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCC
Confidence 999999999999999999999998544
No 6
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-29 Score=199.97 Aligned_cols=114 Identities=27% Similarity=0.525 Sum_probs=107.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCc
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~ 173 (209)
..++ .+||+++||++||||-|+.||..++|. +..+|+|+++.++++.++++.++.+||||+|||+|+.+...||++|.
T Consensus 10 ~~dy-lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 10 EYDY-LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred ccce-EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 3344 899999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 174 ~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+.++|||+|.+.||+++.+||.+++.+....++|+|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimL 124 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIML 124 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 999999999999999999999999999876666654
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-29 Score=197.15 Aligned_cols=110 Identities=19% Similarity=0.450 Sum_probs=103.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+|++++||.|||||+|+.||+++.|. .+..|+|+++..+.+++|+++++|+||||+|||.|++++..||++|.+.||
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 4799999999999999999999999999 777799999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
|||+++++||+++..|+.+++++...+.+|+
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvIm 115 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIM 115 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999999999999964444443
No 8
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.1e-29 Score=193.58 Aligned_cols=110 Identities=19% Similarity=0.468 Sum_probs=104.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+|.+++||+|||||||+.+|.++.|. .|..|+|.|+..+++.++|..++|+|||++|||+|+.+...||++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 578999999999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
||+||.+||.++++|+++|++.++..+-+++
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLV 118 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLV 118 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceec
Confidence 9999999999999999999999887665553
No 9
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-28 Score=186.72 Aligned_cols=109 Identities=24% Similarity=0.476 Sum_probs=103.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|..|||||+|+.+|..+-|+ ....|+|++|+.++++++|.+++|+||||+|||+|+++.++||+.|+++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 689999999999999999999999999 7778999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
||++...||+-+.+|+.+|.++.++.++-|
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlki 116 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKI 116 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEE
Confidence 999999999999999999999976665433
No 10
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.5e-28 Score=185.24 Aligned_cols=110 Identities=24% Similarity=0.478 Sum_probs=105.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+|++++|+.|.|||+|+++|+.++|. +...|+|++|.++.+.+.++.++|+||||+|||+|+...+.||++|.+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 689999999999999999999999999 6677999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
||+|+++||+.+..|+.+++...+..+++||
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL 119 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVIL 119 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEE
Confidence 9999999999999999999999887777764
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=8.3e-28 Score=189.08 Aligned_cols=103 Identities=22% Similarity=0.407 Sum_probs=99.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++||+|||||||+++|+++.|. .+..|+|.+|..|.+.+|++.+.++||||+|||+|.++.-.||++||+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45799999999999999999999999999 88899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||+++++||+++..|.+++..+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~q 110 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQ 110 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHh
Confidence 999999999999999999998766
No 12
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-27 Score=179.94 Aligned_cols=114 Identities=24% Similarity=0.510 Sum_probs=105.1
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccC
Q 028397 94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (209)
Q Consensus 94 ~~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a 172 (209)
...++ .+|++++|++.||||||+.+|.++.|. .+..|.|++|..|++.-..+.++++||||+|||+|+.+...||+++
T Consensus 16 qnFDy-mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 16 QNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred ccccc-eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 33455 569999999999999999999999999 8999999999999998888999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 173 ~~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
++||+|||+||.+||..++.|...|+.++-.+.++|
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvi 130 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVI 130 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEE
Confidence 999999999999999999999999999876555544
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=1.4e-26 Score=185.76 Aligned_cols=111 Identities=24% Similarity=0.436 Sum_probs=101.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+.+|..+.|. ++.||++.++ .+.+.+++..++++||||+|+++|..+++.||+++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35789999999999999999999999998 7888888665 477889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++ ..|++++++..+..|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilV 115 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 115 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 99999999999998 7999999998877666654
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=1.9e-26 Score=184.08 Aligned_cols=108 Identities=21% Similarity=0.457 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||+.+|++++|. ++.+|++.++ .+.+.+++..++++||||+|+++|..++..+|++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 79999999999999999999999999 7888998765 566788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++ ..|++++++..++.|++||
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilv 111 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLV 111 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999 6899999888766666553
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=1.3e-26 Score=187.01 Aligned_cols=111 Identities=23% Similarity=0.461 Sum_probs=103.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|+.|||||||+.+|.++.|. ++.++.+.++..+.+.+++..+.+++||++|+++|..++..||+++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 3699999999999999999999999998 777788999988889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
|||+++++||+++..|++++.+..++.|++||
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilV 116 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILV 116 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999888777666664
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=1.2e-26 Score=189.05 Aligned_cols=108 Identities=21% Similarity=0.452 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+.|+++|+.|||||||+++|.++.|. ++.+|+|.++..+.+.+++..++++||||+|+++|..++..||+++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998 77889999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
|++|++||+++..|++.+++.....+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~pii 109 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELL 109 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 99999999999999999988754434433
No 17
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=2.4e-26 Score=183.64 Aligned_cols=109 Identities=24% Similarity=0.441 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.++.|. ++.||++.++ .+.+.+++..+++++|||+|+++|..+++.+|+++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999 7888888765 46788999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
||+++++||+++ ..|++++++.+++.+++||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilV 111 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLV 111 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 999999999996 7999999998877666654
No 18
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=5.6e-26 Score=183.04 Aligned_cols=110 Identities=17% Similarity=0.354 Sum_probs=98.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|+++||||||+.+|..+.|. ++.||++.++ .+.+.+++..+.++||||+|+++|+.+++.||+++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3589999999999999999999999998 7888988665 4567789999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 178 MFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 178 vfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|||++|++||+++. .|++++.+..++.|++|+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilv 113 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLV 113 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 99999999999997 699999887666665553
No 19
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.94 E-value=6e-26 Score=181.84 Aligned_cols=108 Identities=52% Similarity=0.916 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|++++|. ++.+|+|.++..+.+.+++..+.+++||++|+++|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 59999999999999999999999999 78899999998889999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
|+++++||+++..|++++++..+..++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pil 109 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPIL 109 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999999999999988765555554
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=1.4e-25 Score=186.38 Aligned_cols=111 Identities=23% Similarity=0.397 Sum_probs=100.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+.+|+++.|. ++.||++.++. +.+.+++..+.++||||+|+++|..+++.||+++|+++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45799999999999999999999999999 88889987764 56888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++ ..|++++++..++.|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilV 123 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLI 123 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999985 7999999988776666553
No 21
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=1.1e-26 Score=179.74 Aligned_cols=110 Identities=20% Similarity=0.459 Sum_probs=101.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEE-CCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
-.++++++||+-||||||++.|.+++|. -..||+|+||+.+.+++ +|..++|++|||+|||+|+++.++||++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 3689999999999999999999999999 67889999999998888 688999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
+|||+||++||++++.|+.+...+- |..++++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFl 120 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFL 120 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEE
Confidence 9999999999999999999998773 4555544
No 22
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=2.1e-25 Score=181.89 Aligned_cols=100 Identities=23% Similarity=0.358 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-----CeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-----~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
+||+++|+++||||||+++|+++.|. .+.+|+|.++..+.+.++ +..+.++|||++|+++|..+++.||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 59999999999999999999999998 788899988888877774 578999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 175 ILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 175 illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|+|||++|++||+++..|++++.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~ 106 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNK 106 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999764
No 23
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=4.1e-25 Score=175.71 Aligned_cols=108 Identities=19% Similarity=0.364 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|+++.|. .+.||++.++. +.+.+++..++++|||++|+++|..++..+|+++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999997 88889887664 56778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++. .|++++++..++.|++|+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilv 111 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLV 111 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999997 699999887766666553
No 24
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=4.1e-25 Score=182.60 Aligned_cols=109 Identities=24% Similarity=0.451 Sum_probs=99.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+|+|++|||||||+.+|.++.|. ++.||++.++. +.+.+++..+.|+||||+|++.|..+++.+|+++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999 78889987664 6788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
||+++++||+++ ..|..+++...++.|++||
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLV 111 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLV 111 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 999999999999 5799999888877777664
No 25
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.93 E-value=4.5e-25 Score=171.51 Aligned_cols=107 Identities=25% Similarity=0.502 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
||+++|+.+||||||+++|.++.|. .+.+|.|.+...+.+.+++..+.+++||++|+++|..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999 788899999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 181 LTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
+++++||+++..|++++....+..++++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~ii 108 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPII 108 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEE
T ss_pred ccccccccccccccccccccccccccce
Confidence 9999999999999999999988534443
No 26
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=5.3e-27 Score=176.29 Aligned_cols=104 Identities=22% Similarity=0.493 Sum_probs=98.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 104 SLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 104 vvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
+++||+++|||+|+.||.++.|- ..++|+|+||..+.+.+++.++++++|||+|||+|++....||++||+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999999999998 6788999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 182 TSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|+.||++++.|+.+|.++.++++-+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l 106 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVAL 106 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhH
Confidence 99999999999999999997765543
No 27
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.2e-24 Score=179.25 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=103.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|+.++|. .+.+|+|.++..+.+..++..+++++|||+|+++|..++..||+++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 55799999999999999999999999998 78889999998888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++..|++++.+..++.|++|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilv 123 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC 123 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999988766666553
No 28
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=1.4e-25 Score=172.87 Aligned_cols=111 Identities=29% Similarity=0.485 Sum_probs=103.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
+.-.||++++|++-||||||+.||+.++|. .-..|....|..+.+.+.+....|.||||+|||+|..+-+.||++.+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 345899999999999999999999999999 7788998899999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
|+|||+||++||+.++.|..+++..-.+.+-+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l 121 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIEL 121 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEE
Confidence 99999999999999999999999986554433
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.92 E-value=1.1e-24 Score=170.60 Aligned_cols=109 Identities=22% Similarity=0.473 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.+++|. .+.+|++.++..+.+.+++..+++++||++|+++|..++..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999998 6777889999888889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
||+++++||+++..|+++++..... .|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iii 112 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFL 112 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999999999999999999877543 44443
No 30
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=1.6e-24 Score=169.45 Aligned_cols=107 Identities=23% Similarity=0.502 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|.+++|. .+.+|++.++..+.+.+++..+++++||++|+++|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998 77889999998889999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
|+++++||+++..|++++....+...++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~i 108 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQK 108 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 9999999999999999998876543333
No 31
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.92 E-value=3.5e-25 Score=178.10 Aligned_cols=110 Identities=17% Similarity=0.385 Sum_probs=101.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
..+|+++|||+++|||+|+..|..+.|+ +|.||+- |-+...+.++ |+.+.|.+|||+|||+|+.+++..|.++|+||
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 4689999999999999999999999999 7777777 5566788995 99999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
+||++.+++||+++. +|+++++++++..|+|++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLV 115 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILV 115 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEE
Confidence 999999999999986 899999999998888875
No 32
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=3.9e-24 Score=169.91 Aligned_cols=108 Identities=21% Similarity=0.471 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+.+|+++.|. ++.+|++ +.+.+.+.+++..++++||||+|++.|..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998 7778876 445567788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++. .|+..+....++.|++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv 111 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILV 111 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999996 699999887766666653
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=3.2e-24 Score=173.80 Aligned_cols=100 Identities=23% Similarity=0.458 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.++ +..+.+++|||+|+++|..+++.+|++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 69999999999999999999999998 788899999988888888 8899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||+++++||+++..|++++...
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~ 102 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSK 102 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
No 34
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=2.8e-24 Score=170.03 Aligned_cols=106 Identities=23% Similarity=0.419 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.||+++|++|||||||+++|+++.|. ++.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 38999999999999999999999998 88899999998888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-CCCCce
Q 028397 180 DLTSRCTLNSIVGWYSEARKW-NQGPNL 206 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~-~~~~~~ 206 (209)
|+++++||+++..|++++.+. .+..++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 108 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVL 108 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999999999999999998765 343343
No 35
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=3.9e-24 Score=184.26 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=97.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECC-------------eEEEEEEEecCCCcCC
Q 028397 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSRS 161 (209)
Q Consensus 96 ~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~-------------~~~~l~i~D~~G~e~~ 161 (209)
.+...+||+++|+.|||||||+++|+++.|. .+.+|+|.++..+.+.+++ ..+.++||||+|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 3456799999999999999999999999998 7788999999888887753 5789999999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+.+++.||++++++|+|||+++++||+++..|++++.+..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~ 136 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATG 136 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998763
No 36
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.91 E-value=7.5e-24 Score=165.60 Aligned_cols=109 Identities=27% Similarity=0.501 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|.+++|. .+.++.+.++..+.+.+++..+.+++|||+|++.|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998 66678888888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
|++++.||+++..|++++++..++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv 110 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVV 110 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999887666565553
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.91 E-value=5.9e-24 Score=166.51 Aligned_cols=108 Identities=21% Similarity=0.544 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||+++|.+++|. .+.+|+|.++..+.+..++..+.+++||++|+++|..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998 78889998888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
|+++++||+++..|++++.+.... .|+++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 111 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVIL 111 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 999999999999999999887643 33443
No 38
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.91 E-value=7e-24 Score=164.75 Aligned_cols=102 Identities=19% Similarity=0.421 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|++++|. .+.+|++.++..+.+.+++..+.+++|||+|++.+..+++.+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999999999998 88889999998899999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
|+++++||+++..|+.++.+...
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~ 103 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGG 103 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhcc
Confidence 99999999999999999988743
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=1.5e-23 Score=165.01 Aligned_cols=109 Identities=23% Similarity=0.394 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|.++.+. .+.+|.+.++....+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 59999999999999999999999988 78889999988888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++..|+.++.+...+.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv 110 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLC 110 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999988766666553
No 40
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.91 E-value=1.1e-23 Score=170.64 Aligned_cols=110 Identities=18% Similarity=0.444 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.+++|. .+.+|++.++..+.+.+++..+.+.|||++|++.|..++..++++++++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 699999999999999999999999998 7888999999888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
||+++++||+++..|++++....+..|++|+
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivV 116 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLV 116 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999999999999887766665553
No 41
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.91 E-value=1e-23 Score=165.54 Aligned_cols=109 Identities=20% Similarity=0.487 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|+++||||||+++|.++.|. .+.+|++.++..+.+.+++..+.+++||++|++.+..++..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999999999 7888999998888889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
||+++++||+++..|++++.+.... .|++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ii 113 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERML 113 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence 9999999999999999999887543 34343
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.91 E-value=1.3e-23 Score=164.31 Aligned_cols=109 Identities=21% Similarity=0.505 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.++.|. .+.+|.+.++..+.+.+++..+.+++||++|+++|..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 489999999999999999999999998 7788999999888999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCC-CCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQ-GPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~-~~~~iI 208 (209)
||++|++||+++..|++++.+... ..|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~ii 112 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLL 112 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence 999999999999999999988763 344443
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.91 E-value=1.3e-23 Score=163.00 Aligned_cols=108 Identities=16% Similarity=0.296 Sum_probs=95.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|+.+.|. .+.+|++ +.+.+.+.+++..+.++||||+|+++|..++..|++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 379999999999999999999999998 6667776 55667788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
||+++++||+++..|++++.+.. .+.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 111 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVL 111 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999998763 2344443
No 44
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.91 E-value=1.4e-23 Score=166.28 Aligned_cols=108 Identities=11% Similarity=0.184 Sum_probs=95.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.+++|. .+.+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 489999999999999999999999998 7778888555 46678899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
||+++++||+++..|+..+.+.. ++.|+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piil 112 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVL 112 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999887752 3344444
No 45
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=1.9e-23 Score=162.64 Aligned_cols=101 Identities=16% Similarity=0.268 Sum_probs=92.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
++||+++|++|||||||+++|..++|. .+.+|.+ +++.+.+.+++..+.++|||++|+++|..++..|++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 479999999999999999999999998 5556665 66678888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
||+++++||+++..|+..+.+..
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~ 102 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVK 102 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998763
No 46
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=2.5e-23 Score=167.18 Aligned_cols=108 Identities=24% Similarity=0.398 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.||+++|++|||||||+++|.++.|. .+.+|.+.++. +.+.+++..+.++|||++|++.|..++..+|+++|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998 67788876654 56778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++. .|++++....++.|++|+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilv 110 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLV 110 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999997 699999987766666553
No 47
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=1.2e-23 Score=171.22 Aligned_cols=104 Identities=21% Similarity=0.374 Sum_probs=97.0
Q ss_pred EcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 106 LGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 106 lGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
+|+++||||||+++|+.+.|. .+.+|+|.++..+.+.+++..++++||||+|+++|..++..||+++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999999998 7888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 185 CTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 185 ~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+||+++..|++++++..++.|++|+
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilv 105 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLC 105 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999999988766666553
No 48
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.9e-23 Score=167.28 Aligned_cols=106 Identities=21% Similarity=0.451 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|.++.|. .+.+|.+.++..+.+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998 68899999988888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
|+++++||+++..|++++.+.....++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~ 107 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVI 107 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCe
Confidence 999999999999999999987554333
No 49
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=2.6e-23 Score=166.83 Aligned_cols=109 Identities=24% Similarity=0.408 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
+||+++|+++||||||+++|+++.|. .+.+|++.++..+.+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 58999999999999999999999997 4778999988888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
||+++++||+++..|+++++...++.|++||
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv 111 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLC 111 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999999999999999887655565553
No 50
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.91 E-value=1.6e-23 Score=165.84 Aligned_cols=110 Identities=27% Similarity=0.579 Sum_probs=97.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC----------CeEEEEEEEecCCCcCCcccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~----------~~~~~l~i~D~~G~e~~~~~~~~ 167 (209)
..+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.++ +..+.++|||++|+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 3589999999999999999999999999 788899999887777664 46799999999999999999999
Q ss_pred ccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 168 ~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
+++++|++++|||+++++||+++..|++++.... ++.|++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piii 125 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVL 125 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999999999999999998763 3444444
No 51
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.3e-24 Score=162.79 Aligned_cols=109 Identities=23% Similarity=0.485 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+|.+++||-|||||+|+++|...+|. +...|+|++|.++.+++.|++++++||||+|||+|+...+.||+++.+.++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 689999999999999999999999999 7778999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh-CCCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW-NQGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~-~~~~~~iI 208 (209)
||++.+.+++++..|+.+.+.. +++..+++
T Consensus 91 yditrrstynhlsswl~dar~ltnpnt~i~l 121 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFL 121 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhccCCCceEEEE
Confidence 9999999999999999999988 44444444
No 52
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=2.3e-23 Score=161.70 Aligned_cols=109 Identities=17% Similarity=0.393 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC--CeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~--~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
+||+++|+++||||||+++|.++.|. ++.+|++.++..+.+.++ +..+++++||++|+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 59999999999999999999999998 778899999887888887 788999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
|||+++++||+++..|+.++.+..++.|++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv 112 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLV 112 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999887766666553
No 53
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.3e-25 Score=171.77 Aligned_cols=109 Identities=28% Similarity=0.574 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC---------CeEEEEEEEecCCCcCCcccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPIAC 169 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~---------~~~~~l~i~D~~G~e~~~~~~~~~~ 169 (209)
.+|.+.+||+|||||||+++|.++.|. ..+.|+|+||..|.+.++ +..+.|++|||+|||+|+++...||
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 579999999999999999999999999 899999999999988773 4679999999999999999999999
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
++|-+|+++||+|+++||-++..|+.+++.+ +.++-+++
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivl 129 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVL 129 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 9999999999999999999999999999765 55555554
No 54
>PTZ00369 Ras-like protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=166.34 Aligned_cols=102 Identities=14% Similarity=0.249 Sum_probs=94.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.+++|. .+.+|++.++ .+.+.+++..+.+++|||+|+++|..++..|++++|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 4699999999999999999999999998 7777887665 5778899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|||+++++||+++..|++++.+..
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~ 106 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVK 106 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998763
No 55
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.90 E-value=2.2e-23 Score=170.81 Aligned_cols=101 Identities=28% Similarity=0.520 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECC-eEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~-~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
+||+++|+++||||||+++|.++.|. .+.+|++.+++.+.+.+++ ..+.++||||+|++.+..++..|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 59999999999999999999999998 7888999999988888865 679999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
||+++++||+++..|++++.+..
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~ 103 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVL 103 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998874
No 56
>PLN03110 Rab GTPase; Provisional
Probab=99.90 E-value=5.8e-23 Score=168.72 Aligned_cols=109 Identities=28% Similarity=0.512 Sum_probs=100.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.|. ++.+|+|.++..+.+.+++..+.++|||++|+++|..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 3689999999999999999999999998 788999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
|||+++++||+++..|+..++...+..+++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 120 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVI 120 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeE
Confidence 999999999999999999998876543443
No 57
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.90 E-value=5.6e-23 Score=161.26 Aligned_cols=103 Identities=26% Similarity=0.480 Sum_probs=96.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|+++||||||+++|.++.|. .+.++.|.++..+.+.+++..+.++|||++|++++..++..+++++|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 5799999999999999999999999998 778899999888889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|||+++++||+++..|+.++.+..
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~ 107 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYA 107 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhc
Confidence 999999999999999999987653
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.90 E-value=4.4e-23 Score=160.90 Aligned_cols=108 Identities=25% Similarity=0.515 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|+++||||||+++|.+++|. .+.++.+.++..+.+..++..+.+++||++|++++..+++.++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 489999999999999999999999998 7889999999989999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
||+++++||+++.+|+.++.+..+..+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 111 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVI 111 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 99999999999999999998886653343
No 59
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=4e-23 Score=169.17 Aligned_cols=102 Identities=24% Similarity=0.546 Sum_probs=95.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEE-CCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
.+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+ ++..+++++|||+|++.|..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998 67789999999888887 5778999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|||++|++||+++..|+.++.+..
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~ 105 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHI 105 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998764
No 60
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=4e-23 Score=161.52 Aligned_cols=109 Identities=28% Similarity=0.523 Sum_probs=98.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|+|||||+++|..+.|. .+.++.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 689999999999999999999999998 6777888888888899999889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
||+++++||+++..|+.++...... .|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iv 113 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLL 113 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence 9999999999999999999876543 34443
No 61
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=8.1e-23 Score=161.36 Aligned_cols=107 Identities=25% Similarity=0.466 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+.+|.++.|. ++.+|. .+++...+.+++..+++++||++|+++|..+++.+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 69999999999999999999999999 555554 5666778888998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEE
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iI 208 (209)
|+++++||+++. .|+..+++..++.|+++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piil 109 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIIL 109 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 999999999995 79999987655555554
No 62
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.90 E-value=5.2e-23 Score=160.56 Aligned_cols=108 Identities=16% Similarity=0.286 Sum_probs=95.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
++||+++|++|||||||+++|+++.|. .+.+|++..+ .+.+.+++..+.+++|||+|+++|..+++.+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999999999998 6667777554 46788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
||+++++||+++..|+.++.+.. .+.|++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 111 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMIL 111 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999997652 3344444
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.90 E-value=6.2e-23 Score=159.49 Aligned_cols=108 Identities=24% Similarity=0.499 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||++++.++++. .+.++.+.++..+.+.+++..+.+++||++|++.|..+++.+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 69999999999999999999999998 77888999998888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQ-GPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~-~~~~iI 208 (209)
|+++++||+++..|+.+++.... +.|++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiv 110 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVIL 110 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 99999999999999999987653 344443
No 64
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=6e-23 Score=163.74 Aligned_cols=108 Identities=20% Similarity=0.441 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
+||+++|++|||||||+++|.+++|. .+.+|++.++.. .+..+ +..+.++||||+|+++|..+++.+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999998 777788877653 45554 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
||+++++||+++. .|+.++....++.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 111 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLV 111 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999996 699999877666666553
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=7.7e-23 Score=161.08 Aligned_cols=109 Identities=23% Similarity=0.518 Sum_probs=98.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc-cccccccccCcEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF 177 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~-~~~~~~~~~a~~ill 177 (209)
.+||+++|++|||||||+++|..+.|. .+.++.+.++..+.+.+++..+.+++||++|+++|. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 489999999999999999999999998 788899999998999999999999999999999987 578899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
|||+++++||+++..|++++.+.. .+.|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ii 114 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRIL 114 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999998764 3344444
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=6.4e-23 Score=164.92 Aligned_cols=108 Identities=27% Similarity=0.595 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
+||+++|+++||||||+++|.+++|. .+.+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 69999999999999999999999986 5677889888888889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
||+++++||+++..|+..+.+..+..+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 110 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIM 110 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 999999999999999999998865444443
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.90 E-value=9e-23 Score=160.37 Aligned_cols=109 Identities=21% Similarity=0.475 Sum_probs=99.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|+++||||||+++|.++++. .+.++.|.++..+.+.+++..+.+.+||++|++++..+...+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999998 6677889999888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC-CCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWN-QGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~-~~~~~iI 208 (209)
||+++++||+++..|++++++.. ++.|++|
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pviv 114 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIML 114 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 99999999999999999998874 3444444
No 68
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=1.2e-22 Score=159.12 Aligned_cols=102 Identities=22% Similarity=0.405 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
+||+++|++|||||||+.+|+++.|....++++.++ .+.+.+++..+.+++||++|++. ..|++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999999984445555455 47788999999999999999985 346789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 181 LTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
++|++||+++..|++++.... ++.|+++
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piil 104 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLIL 104 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999998875 3344444
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.89 E-value=1.3e-22 Score=156.75 Aligned_cols=108 Identities=14% Similarity=0.262 Sum_probs=94.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.+++|. .+.+|.+.. +.+.+.+++..+.+++||++|+++|..++..|+++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 379999999999999999999999998 677777654 456778899899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
||+++++||+++..|+.++.+.. .+.|++|
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiv 111 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVL 111 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999998763 2344443
No 70
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=9.7e-23 Score=158.65 Aligned_cols=108 Identities=19% Similarity=0.374 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~--~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
+||+++|++|||||||++++.++ .|. ++.+|+|.++..+.+.++ +..+++.+|||+|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 59999999999999999999975 677 788899999988888775 67899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
+|||+++++||+++..|++++.+...+.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il 112 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVL 112 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999999999999999988765555554
No 71
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=7.4e-23 Score=171.65 Aligned_cols=99 Identities=16% Similarity=0.308 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|++++|. .+.+|++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998 6777776 677788899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+++++||+++..|++++.+.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~ 100 (247)
T cd04143 80 SLDNRESFEEVCRLREQILET 100 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999754
No 72
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.89 E-value=1.8e-22 Score=158.76 Aligned_cols=106 Identities=20% Similarity=0.466 Sum_probs=94.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
|+++|++|||||||+++|.++.|. .+.++.+.. +...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999999998 666777655 446778899999999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 182 TSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 182 t~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
++++||+++. .|++.+.+..++.|++|+
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv 108 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILV 108 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 9999999996 699999988776666654
No 73
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=3.4e-23 Score=159.17 Aligned_cols=115 Identities=55% Similarity=0.904 Sum_probs=110.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCc
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~ 173 (209)
..+...+||-++||+.+|||||+..|+++++. ++..+.|+++..+++.+.+..+.+.|||.+||+++..+.+..++++.
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 36678999999999999999999999999998 88889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 174 ~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+++|+||+|.+++++++..||.+.+..++.++||++
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilv 130 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILV 130 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccceEEe
Confidence 999999999999999999999999999999999875
No 74
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.89 E-value=2.7e-22 Score=155.48 Aligned_cols=108 Identities=20% Similarity=0.496 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||++++.++++. .+.++.+.++..+.+.+++..+++++||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998 77889999999999999998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCC-CCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQ-GPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~-~~~~iI 208 (209)
|+++++||+++..|++++....+ +.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVL 110 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999977654 344443
No 75
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=1.6e-22 Score=162.42 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
||+++|++|||||||+++|+++.|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..||+++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6999999999999999999999998 6677777554 4567788999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC
Q 028397 181 LTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~ 201 (209)
+++++||+++..|++.+.+..
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~ 100 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVK 100 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997653
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=3.4e-22 Score=162.03 Aligned_cols=108 Identities=19% Similarity=0.400 Sum_probs=87.0
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CC-Ccccceee-eeEEEE--------EEECCeEEEEEEEecCCCcCCcc
Q 028397 100 SLKISLLGDCQIGKTSFVV-KYVGNE-----QE-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD 163 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~-~~~~~~-----~~-~~~~t~g~-~~~~~~--------~~~~~~~~~l~i~D~~G~e~~~~ 163 (209)
.+||+++|+++||||||+. ++.++. |. ++.||++. +.+... +.+++..+.++||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999996 666543 44 56788863 433322 25789999999999999986 3
Q ss_pred ccccccccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 164 HVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 164 ~~~~~~~~a~~illvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
+...+|+++|++|+|||+++++||+++. .|++++++..++.|++|+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilv 126 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILV 126 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 5677999999999999999999999997 699999887766555553
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=4.4e-22 Score=157.20 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=96.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
..+||+++|++|||||||+++|+++.|. ++.+|++.++..+.+.+++..+.+.+||++|++.+..++..||+++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4799999999999999999999999996 56788898888788889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
+|||+++++||+++..|+..+.... +.|+++
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~~-~~p~ii 113 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFMLG-EIPCLF 113 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccCC-CCeEEE
Confidence 9999999999999999999875432 334443
No 78
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.88 E-value=3e-22 Score=165.29 Aligned_cols=104 Identities=22% Similarity=0.410 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
+||+++|+++||||||+++|.+++|.++.+|++.++..+.+ ..+.+.||||+|++.|..++..||+++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999998778899988765543 46889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 181 LTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
+++++||+++..|+..+.+.... .|++|
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIl 105 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAV 105 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 99999999999988888765433 34443
No 79
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.88 E-value=5.2e-22 Score=155.48 Aligned_cols=99 Identities=14% Similarity=0.244 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|+++.|. .+.+|.+..+ .+.+..++..+.+++|||+|+++|..++..++++++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 79999999999999999999999998 6777776444 556677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+++++||+++..|++.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~ 101 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEI 101 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.88 E-value=5.3e-22 Score=154.17 Aligned_cols=104 Identities=27% Similarity=0.543 Sum_probs=97.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
++||+++|+++||||||++++.++++. .+.++.+.++..+.+.+++..+++.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999998 5888999888889999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCC
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQG 203 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~ 203 (209)
||.++++||+.+..|++.+......
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~ 105 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASP 105 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999887633
No 81
>PLN03108 Rab family protein; Provisional
Probab=99.88 E-value=4.8e-22 Score=162.52 Aligned_cols=109 Identities=20% Similarity=0.447 Sum_probs=99.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|+++||||||+++|.+++|. .+.+|++.++..+.+.+++..+.+++|||+|++.|..++..+++++|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 599999999999999999999999998 7778999999888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
||+++++||+++..|++++.+.... .|+++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piii 116 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIML 116 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999999999999999998876543 34333
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=7.3e-22 Score=153.16 Aligned_cols=108 Identities=27% Similarity=0.562 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++.+..++..+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 69999999999999999999999988 77788899988888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWN-QGPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~-~~~~~iI 208 (209)
|+++++||+.+..|++++..+. +..|+++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivv 110 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIML 110 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999999999999999998876 3344443
No 83
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.87 E-value=2.4e-21 Score=152.37 Aligned_cols=108 Identities=16% Similarity=0.355 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|.+++|. .+.++.+ +.+...+.+++..+.+++|||+|++.|..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 59999999999999999999999998 5666665 445567788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++. .|++.++...++.|++|+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv 110 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLV 110 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 999999999996 799999877665665553
No 84
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.87 E-value=1.5e-21 Score=158.57 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc--------ccccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD 171 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--------~~~~~~~ 171 (209)
+||+++|+++||||||+++|.+++|. .+.||++.+++...+.+++..+.++||||+|.+.+... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 59999999999999999999999998 78888888887777888999999999999998765322 3345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 172 a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+|++|+|||+++++||+++..|++++.+..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~ 110 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETR 110 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998763
No 85
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=1.3e-21 Score=152.24 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|+++.+. .+.+|++ +.+.+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 59999999999999999999999998 5556665 455677788888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+++++||+++..|+..+.+.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~ 100 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRV 100 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 86
>PLN03118 Rab family protein; Provisional
Probab=99.87 E-value=2.4e-21 Score=158.12 Aligned_cols=103 Identities=29% Similarity=0.562 Sum_probs=94.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|++|||||||+++|.++.+..+.++.+.++..+.+.+++..+.+.||||+|+++|..++..+++++|++++|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999998887788999998888888999899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhhC
Q 028397 179 FDLTSRCTLNSIVG-WYSEARKWN 201 (209)
Q Consensus 179 fDit~~~Sf~~i~~-wl~~i~~~~ 201 (209)
||+++++||+++.. |...+..+.
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~ 116 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYS 116 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999975 777776553
No 87
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=2.1e-21 Score=158.78 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=102.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 96 ~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
.+...+||+++|++|||||||+++++.+.+. .+.+|.+.++..+.+..++..+.+++||++|++.|..++..+++++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 3445799999999999999999999999998 888999999988888889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 175 illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
+++|||+++++||+++..|+.++.+..++.++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~l 118 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVL 118 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999999999999999999999987765555443
No 88
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.87 E-value=2.6e-21 Score=152.24 Aligned_cols=108 Identities=20% Similarity=0.427 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.||+++|++|||||||+++|.++.|. .+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 69999999999999999999999998 67777775554 56788899999999999999999999989999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++. .|+.++++..++.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv 111 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILV 111 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 999999999996 699999887666665543
No 89
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.87 E-value=3e-21 Score=149.86 Aligned_cols=100 Identities=13% Similarity=0.225 Sum_probs=90.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|+++||||||+++|+++.+. .+.++++.. ..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 489999999999999999999999988 666677644 456677899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||+++++||+++..|+.++.+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~ 102 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRV 102 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.87 E-value=3.1e-21 Score=150.90 Aligned_cols=101 Identities=25% Similarity=0.432 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||++++.++.+. .+.++.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 59999999999999999999999988 67778898888888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC
Q 028397 180 DLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|++++++|+++..|.+++....
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~ 102 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQA 102 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999886653
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.86 E-value=3.8e-21 Score=148.44 Aligned_cols=106 Identities=28% Similarity=0.543 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|+++.+. .+.++++.++....+.+++..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 69999999999999999999999998 66667777777778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 180 DLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
|++++++|+.+..|+++++...+...+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~p 107 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNIS 107 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCe
Confidence 999999999999999999887654433
No 92
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-23 Score=163.25 Aligned_cols=111 Identities=17% Similarity=0.371 Sum_probs=105.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+|++++|.++|||||+|++||.+-|. +|..|+|.++...++.++++.+.+.+||++||++|..+...||++|++.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 4799999999999999999999999999 888899999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
||+-||+.||+.+..|++++.+.....|.+++
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhccCCeEEe
Confidence 99999999999999999999998877766653
No 93
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.86 E-value=5.9e-21 Score=148.13 Aligned_cols=101 Identities=27% Similarity=0.566 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..+...+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 69999999999999999999999998 67888998888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC
Q 028397 180 DLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|+++++||+.+..|++.+.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~ 102 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYS 102 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhC
Confidence 9999999999999999998874
No 94
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.86 E-value=5e-21 Score=149.58 Aligned_cols=106 Identities=16% Similarity=0.336 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC-CccccccccccCcEEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~-~~~~~~~~~~~a~~illvf 179 (209)
||+++|++|||||||+++|+++.|. ++.++++..+ .+.+.+++..+.+++||++|++. +......+++++|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 7999999999999999999999988 6666665443 56678899999999999999996 3456778899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC---CCCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWN---QGPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~---~~~~~iI 208 (209)
|+++++||+++..|+..+.+.. .+.|+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piil 111 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVIL 111 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999998764 2455544
No 95
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.86 E-value=2.9e-21 Score=151.80 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=89.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
|+++|++|||||||+++|.++.+. .+.||+|.+. ..+++..+++++||++|+++|..++..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 799999999999999999999888 7788888753 34556678999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 182 TSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
+++++|++++.|+.++.+..++.|+++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piil 104 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVV 104 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 999999999999999976555555554
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=1.4e-20 Score=147.07 Aligned_cols=108 Identities=22% Similarity=0.460 Sum_probs=98.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||++++.++.+. .+.++++.++..+.+.+++..+.+.+||++|++.|...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4699999999999999999999998888 677888988888889999999999999999999999998999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
|||+++++||+++..|+++++......++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ 114 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVI 114 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCe
Confidence 99999999999999999999887654333
No 97
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.85 E-value=4.1e-21 Score=152.47 Aligned_cols=106 Identities=18% Similarity=0.304 Sum_probs=90.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|+++||||||+++|..++|..+.||+|.++.. +.. ..+.+++||++|++.+..++..||+++|++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4699999999999999999999988888778899987653 333 458899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
||++++++|+++..|+.++.+. .++.|++|
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piil 119 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILV 119 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEE
Confidence 9999999999999999888543 23444444
No 98
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.85 E-value=1.3e-20 Score=147.99 Aligned_cols=100 Identities=20% Similarity=0.282 Sum_probs=91.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.++.|. .+.++++.. ..+.+.+++..+.+++||++|+++|..++..++++++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 379999999999999999999999998 666777644 467788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||++++++|+++..|.+.+.+.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~ 101 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRI 101 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.85 E-value=3.2e-21 Score=152.19 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=89.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|+++||||||+++|..+++..+.||+|.++. .+.. ..+++++||++|++++..+++.+|+++|++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999888877888887764 3333 468899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
||++++.+|+++..|+.++.+. .++.|++|
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piil 115 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLV 115 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEE
Confidence 9999999999999888777543 23444444
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=4.1e-21 Score=150.10 Aligned_cols=95 Identities=21% Similarity=0.335 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
+||+++|+++||||||++++..++|..+.||+|.++. .+.. ..+.+++||++|++++..++..||+++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 5899999999999999999999999877888887754 3333 46889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 028397 181 LTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~ 199 (209)
+++++||+++..|+.++..
T Consensus 77 ~~~~~s~~~~~~~~~~~~~ 95 (159)
T cd04150 77 SNDRERIGEAREELQRMLN 95 (159)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999998887753
No 101
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.85 E-value=1.1e-20 Score=155.81 Aligned_cols=106 Identities=13% Similarity=0.235 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccc-cCcEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF 177 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~-~a~~ill 177 (209)
+||+++|++|||||||+++|..++|. .+.++.+.+++.+.+.+++..+.+.+||++|++ ..+...+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 69999999999999999999999985 444555557888899999999999999999998 334556667 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
|||++|++||+++..|+.++.+.. .+.|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piil 111 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIIL 111 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999998764 3444444
No 102
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.85 E-value=4e-21 Score=155.95 Aligned_cols=109 Identities=15% Similarity=0.242 Sum_probs=98.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|.+|||||+|+.+|..++|. +|.||+. +.+.+.+.+++..+.++|+||+|+++|..+...|++++|+|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 4689999999999999999999999999 6677776 7888999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-CCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW-NQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~-~~~~~~iI 208 (209)
||+++|+.||+.+..++++|.+. ....+|+|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~Piv 112 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPII 112 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEE
Confidence 99999999999999999999543 33443443
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=8e-21 Score=151.82 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=91.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEE-CCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||++++..++|..+.+|.|.++....+.+ ++..+++++|||+|++++..++..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999999866788888877666665 4567999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|||.++.++|+.+..|+.++.+.
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~ 104 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRF 104 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988765
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=1.4e-20 Score=147.57 Aligned_cols=107 Identities=19% Similarity=0.325 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
+||+++|+++||||||+++|.+++|....+++..++ .....+++..+++++|||+|++.+...+..+++++|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999999984455444333 3445667888999999999999988888888999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhCCCCceEE
Q 028397 181 LTSRCTLNSIV-GWYSEARKWNQGPNLMI 208 (209)
Q Consensus 181 it~~~Sf~~i~-~wl~~i~~~~~~~~~iI 208 (209)
+++++||+++. .|++.++...+..|++|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pvii 108 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIIL 108 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999986 79999987766555554
No 105
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=5.5e-21 Score=152.88 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=89.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|+++||||||+++|..++|..+.||+|.++. .+. ...+.+++||++|+++++.++..||+++|++|+|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999988877889887754 333 3468899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
||++++++|+++..|+.++.+. .++.|++|
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piil 123 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEE
Confidence 9999999999999888887542 23444444
No 106
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.84 E-value=1.7e-20 Score=138.98 Aligned_cols=108 Identities=25% Similarity=0.521 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~---~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
||+|+|+.|||||||+++|+++.+. .+.++.+.++......++.....+.+||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 8999999999999999999999886 2333445555555667777777899999999999988888889999999999
Q ss_pred EeCCChhhHHHHH---HHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSIV---GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i~---~wl~~i~~~~~~~~~iIl 209 (209)
||+++++||+++. +|+..++...++.|++++
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv 114 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILV 114 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEE
Confidence 9999999999985 577777777777665553
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.84 E-value=6.4e-20 Score=143.31 Aligned_cols=108 Identities=19% Similarity=0.454 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||+++|.++.+. .+.++.. +.....+..++..+.+++||++|++++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 59999999999999999999999997 6666665 444566778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++. .|+..+.....+.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv 110 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILV 110 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 999999999876 699999887766666553
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=1.5e-20 Score=150.31 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=85.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|+++||||||++++..++|..+.||+|.++. .+.. ..+.+++||++|++.++.++..||+++|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 368999999999999999999999988877788887764 3333 458899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh
Q 028397 179 FDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~ 199 (209)
||++++++|+++..|+.++.+
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~ 112 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLS 112 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHh
Confidence 999999999999988887743
No 109
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.84 E-value=4e-20 Score=141.25 Aligned_cols=108 Identities=24% Similarity=0.565 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|+++||||||++++.++.+. .+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998 66789999999999999988999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC-CCCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWN-QGPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~-~~~~~iI 208 (209)
|.+++++++.+..|+..+.... ...|+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 110 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIIL 110 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 9999999999999999998886 3444443
No 110
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.83 E-value=1.3e-19 Score=145.25 Aligned_cols=108 Identities=21% Similarity=0.386 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.||+++|+.|+|||||+++|..+.|. .+.++.+..+. ..+.+++..+.+.+||++|++.+....+.+++++++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 69999999999999999999999888 56666665544 46778888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 180 DLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 180 Dit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
|+++++||+++. .|++.+++..++.|++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilv 111 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILV 111 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999997 699999887776666654
No 111
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=6.1e-20 Score=148.45 Aligned_cols=99 Identities=13% Similarity=0.268 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
||+++|++|||||||+++|++++|. .+.++++ ++..+.+.+++..+.+++||++|++.|..++..++.++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999999998 5556664 5666778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC
Q 028397 181 LTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~ 201 (209)
++++++|+++..|+..+.+..
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~ 100 (198)
T cd04147 80 VDDPESFEEVERLREEILEVK 100 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 112
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.83 E-value=5.1e-20 Score=150.12 Aligned_cols=109 Identities=25% Similarity=0.362 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.++.|. .+.+|++.++........+..+++.+|||+||++|+.+++.|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 499999999999999999999999999 7777888888878777777799999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 179 FDLTS-RCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 179 fDit~-~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
||+++ ..+++....|++++...++. .++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iil 116 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILL 116 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEE
Confidence 99999 56666667999999998854 44443
No 113
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.83 E-value=4.5e-20 Score=145.36 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=84.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
||+++|+++||||||+++|.++.+..+.+|+|.++. .+.. ..+.+++||++|++++..++..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 789999999999999999999988777888887764 3333 468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh
Q 028397 182 TSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~ 200 (209)
+++++|+++..|+.++.+.
T Consensus 77 s~~~s~~~~~~~~~~~~~~ 95 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTE 95 (169)
T ss_pred CcHHHHHHHHHHHHHHhcC
Confidence 9999999999999998754
No 114
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=2.6e-19 Score=138.56 Aligned_cols=99 Identities=13% Similarity=0.247 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+||+++|++|||||||++++..++|. .+.++++.. ..+...+++..+.+++||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 59999999999999999999999998 666666644 4566788889999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+++++||+++..|+..+.+.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~ 100 (164)
T cd04139 80 SITDMESFTATAEFREQILRV 100 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=2e-19 Score=141.98 Aligned_cols=107 Identities=24% Similarity=0.341 Sum_probs=88.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|+++||||||+++|.++.+..+.+|.|..+ +.+.++ .+.+++||++|++.++.++..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 346899999999999999999999886667778888554 345555 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
|||++++++|+++..|+.++.+. ..+.|++|
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ii 120 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLI 120 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 99999999999999999888543 23444444
No 116
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.81 E-value=3.1e-19 Score=137.46 Aligned_cols=106 Identities=16% Similarity=0.323 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
||+++|++|||||||++++.++.+. .+.++.+ +...+.+.+++..+.+++||++|++.+..++..+++++|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 7999999999999999999998887 6666666 5666778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 181 LTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
++++++++++..|+..+..... ..|+++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 109 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVL 109 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999987754 444443
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=2e-19 Score=141.65 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=86.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
+|+++|+++||||||+++|.++ +. .+.+|.|... +.+..+ .+++++||++|++.++.++..||+++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999999977 66 7888888653 344443 5889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 181 LTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
++++++|+++..|+.++.+.. .+.|++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~pili 105 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILV 105 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence 999999999999999997652 2344444
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.80 E-value=4.9e-19 Score=137.17 Aligned_cols=96 Identities=19% Similarity=0.319 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
||+++|++|||||||+++|.++++..+.+|.+.++. .+.. +..+.+.+||++|++.+..++..+++++|++++|||.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999998866788886653 3443 3468999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh
Q 028397 182 TSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~ 200 (209)
++..+|+++..|+.++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~ 96 (160)
T cd04156 78 SDEARLDESQKELKHILKN 96 (160)
T ss_pred CcHHHHHHHHHHHHHHHhc
Confidence 9999999999999988654
No 119
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=1.2e-18 Score=137.93 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++||++|+++|..++..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 69999999999999999999999998 6777776554 466778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+++.++|+.+..|+..+.+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~ 101 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDM 101 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999888765
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.79 E-value=7.5e-19 Score=139.13 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=85.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.+||+++|+++||||||++++..+++..+.+|.+.++. .+.++ .+++.+||++|++.+...+..+++++|++++||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999999999877788887654 33443 588999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|++++++|..+..|+.++.+.
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~ 111 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAH 111 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhc
Confidence 999999999999888887544
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=7.9e-19 Score=135.95 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=81.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-C-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~-~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
+|+++|+++||||||+++|.++.+ . .+.||+|..+. .+. ...+++++||++|++++..++..+++++|++++||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998864 4 66788886543 222 34688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|++++.+|+.+..|+.++.+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~ 97 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNH 97 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcC
Confidence 999999999999999988653
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.78 E-value=1.1e-18 Score=135.41 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
||+++|+++||||||++++..+.+..+.+|++.++. .+. +..+++++|||+|++.+..++..+++++|++++|||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 799999999999999999998888877788887654 333 3457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHH
Q 028397 182 TSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 182 t~~~Sf~~i~~wl~~i~ 198 (209)
+++.+|.....|+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (158)
T cd04151 77 TDRDRLGTAKEELHAML 93 (158)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999998877666553
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=3.8e-18 Score=132.04 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=84.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
||+++|++|||||||+++++++++..+.++.+.+.. .+.++ .+.+.+||++|++.+...+..+++++|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 799999999999999999999987677788887654 34443 57899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh
Q 028397 182 TSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~ 200 (209)
+++++|.++..|+..+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~ 95 (158)
T cd00878 77 SDRERIEEAKEELHKLLNE 95 (158)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999888664
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=1e-17 Score=134.08 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=83.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|.+|||||||++++.++.+..+.+|.+.... .+.++ .+++.+||++|++.++.++..|+.++|++++|
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 469999999999999999999999887766677665433 33444 47889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh
Q 028397 179 FDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~ 199 (209)
+|++++++|++...|+.++.+
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~ 112 (184)
T smart00178 92 VDAYDKERFAESKRELDALLS 112 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHc
Confidence 999999999999999888764
No 125
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9.5e-18 Score=132.91 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=102.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+|++++||.|.|||+++++...++|. .+.+|+|.+.....+.-+...+++..|||+|||.+-.+..-||-++.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45899999999999999999999999999 89999999988766666656799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
++||++++-++.++.+|..++.+.+.+.|+++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~ 119 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVL 119 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeee
Confidence 99999999999999999999999988866654
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.74 E-value=1.8e-17 Score=132.35 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=85.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|++|||||||++++.++++..+.+|.+... ..+.+++ +.+.+||++|++.+..++..+++++|++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988877777777654 3455554 6789999999999988889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||+++.++|++...|+.++.+.
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~ 115 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSD 115 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988654
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.73 E-value=2.8e-17 Score=125.64 Aligned_cols=94 Identities=22% Similarity=0.424 Sum_probs=83.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
.|+++|++|||||||++++.+++|. ++.+|.+.++.. +..++ +.+.+||++|++.+..++..+++++|++++|||
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999999999999 888888877653 33433 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 028397 181 LTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~ 199 (209)
+++.++|..+..|+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~ 95 (159)
T cd04159 77 AADRTALEAAKNELHDLLE 95 (159)
T ss_pred CCCHHHHHHHHHHHHHHHc
Confidence 9999999999888888754
No 128
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.3e-17 Score=131.77 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=91.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 96 ~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
...++.+|+++|-.++||||+++++..+++....||+|.++.. +.+. ++.+++||.+||++++.+|+.||++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 3457899999999999999999999999999889999988664 4444 78999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|+|.|.+|++-+.++++-+..+....
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~ 114 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEP 114 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCc
Confidence 99999999999999998888876654
No 129
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.73 E-value=2.9e-17 Score=130.68 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=88.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|..++|||||++++..+++....||.|.+.. .+.++ ++.+.+||.+|++.++.+|+.||.++|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccceeEE
Confidence 4689999999999999999999998887788899997764 45554 4678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|.|.+|.+.+++....+.++...
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~ 110 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLND 110 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTS
T ss_pred EEecccceeecccccchhhhcch
Confidence 99999999999999888887653
No 130
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.72 E-value=3.9e-17 Score=127.32 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------C-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~------~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
+|+++|++|||||||++++.+... . .+.+|++.++. .+.++ ...+.+||++|++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999975422 2 44567777664 34444 5789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 175 ILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 175 illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+++|||.++.++++.+..|+.++.+.
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~ 102 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRN 102 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999988654
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=2.1e-16 Score=119.83 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=95.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|.+|+|||||++++..+.+. .+.++++.++....+..++..+.+.+||++|++.+..++..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999999977 7778888888887788888779999999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhhCC-CCceEE
Q 028397 179 FDLTSR-CTLNSIV-GWYSEARKWNQ-GPNLMI 208 (209)
Q Consensus 179 fDit~~-~Sf~~i~-~wl~~i~~~~~-~~~~iI 208 (209)
+|++.. .++++.. .|+..+.+... ..|+++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~iv 113 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIIL 113 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEE
Confidence 999998 8888876 88888877654 444443
No 132
>PTZ00099 rab6; Provisional
Probab=99.67 E-value=3.6e-16 Score=124.73 Aligned_cols=86 Identities=17% Similarity=0.427 Sum_probs=76.9
Q ss_pred CCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 123 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 123 ~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+.|. ++.+|+|.++..+.+.+++..+++.||||+|+++|..++..||++||++|+|||+++++||+++..|+.++.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 5677 788999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred C-CCceEE
Q 028397 202 Q-GPNLMI 208 (209)
Q Consensus 202 ~-~~~~iI 208 (209)
. +.|++|
T Consensus 83 ~~~~piil 90 (176)
T PTZ00099 83 GKDVIIAL 90 (176)
T ss_pred CCCCeEEE
Confidence 3 333333
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=6.2e-16 Score=121.30 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=83.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|++|||||||++++.+..+..+.++.|.++. .+..++ ..+.+||++|++.+...+..+++++|++++|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999999877766778886543 445554 6789999999999888888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||+++..+|.....|+..+.+.
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~ 110 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEE 110 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999888777543
No 134
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.66 E-value=9.5e-16 Score=118.99 Aligned_cols=97 Identities=22% Similarity=0.319 Sum_probs=85.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+++|+++|..++|||+++++|.+.......||.|++.. ++.++ .+++++||.+||...+..|+.||..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik--tl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK--TLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE--EEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 3489999999999999999999997776677889997754 55554 5889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHH
Q 028397 178 MFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~ 198 (209)
|+|.+|+..|++...-++++.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL 110 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELL 110 (185)
T ss_pred EEECchHHHHHHHHHHHHHHH
Confidence 999999999999887777764
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.65 E-value=7.7e-16 Score=121.42 Aligned_cols=96 Identities=15% Similarity=0.263 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CC-Cccc------ceeeeeEEEEEEE-----CCeEEEEEEEecCCCcCCc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~-------~~-~~~~------t~g~~~~~~~~~~-----~~~~~~l~i~D~~G~e~~~ 162 (209)
+|+++|+.+||||||+++|++.. +. .+.+ +.|.++..+.+.+ ++..+.+++|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998732 22 2223 2355555544433 6778999999999999999
Q ss_pred cccccccccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028397 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 163 ~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i 197 (209)
.++..+++++|++|+|||+++..+++....|....
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~ 116 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL 116 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH
Confidence 99999999999999999999988888887776443
No 136
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=1.5e-15 Score=123.81 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccC-cEEEEEEe
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD 180 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a-~~illvfD 180 (209)
+|+++|+++||||||+++|.++++....+++..++........+....+.+||++|+++++.....+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999999885555554444332222224567899999999999998888899999 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHH
Q 028397 181 LTSR-CTLNSIVGWYSEAR 198 (209)
Q Consensus 181 it~~-~Sf~~i~~wl~~i~ 198 (209)
.++. +++..+..|+.++.
T Consensus 82 ~~~~~~~~~~~~~~l~~il 100 (203)
T cd04105 82 SATFQKNLKDVAEFLYDIL 100 (203)
T ss_pred CccchhHHHHHHHHHHHHH
Confidence 9998 78998888777664
No 137
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.7e-15 Score=115.00 Aligned_cols=97 Identities=19% Similarity=0.302 Sum_probs=86.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
++++|+++|-.++||||+++.++-++.....||+|+++... ++ +++++++||.+||++.+.+|+.||.+..++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetV--ty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV--TY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEE--Ee--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 48999999999999999999999998888899999876533 33 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh
Q 028397 179 FDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~ 199 (209)
.|..+++..++++.-+..|-.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~ 112 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIIN 112 (180)
T ss_pred EeccchhhHHHHHHHHHHHhC
Confidence 999999999998866666543
No 138
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.62 E-value=5.1e-18 Score=134.19 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=95.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCe-EEEEEEEecCCCcCCccccccccccCcEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~-~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
...+|+.|+|+-|||||+++++|+...|. .|..|+|.++.-+.+..+.. .+++++||.+||++|-.+...||+.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 44799999999999999999999999999 88889999998888877654 48999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.+|||+|+..+|+.+..|.+++...
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk 127 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSK 127 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCc
Confidence 9999999999999999999998654
No 139
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.59 E-value=1.2e-14 Score=113.41 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCc----CCccccccccc---cCc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACK---DAV 173 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e----~~~~~~~~~~~---~a~ 173 (209)
.|+++|.++||||||++++.+.+.. ...+....+.....+.+++ ...+.+|||+|+. .+..+...+++ .+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999976543 2212111111111233333 2578999999974 23334445544 599
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhC
Q 028397 174 AILFMFDLTSR-CTLNSIVGWYSEARKWN 201 (209)
Q Consensus 174 ~illvfDit~~-~Sf~~i~~wl~~i~~~~ 201 (209)
++++|||.++. ++++++..|++++.+..
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~ 109 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYN 109 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999 89999999999998764
No 140
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.58 E-value=1.5e-14 Score=111.28 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=83.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeeEEEEEEE-CCeEEEEEEEecCCCcCC-ccccccccccCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRS-FDHVPIACKDAV 173 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~---~~~~t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~~-~~~~~~~~~~a~ 173 (209)
+.+|++++|-.+||||+++.++..++.. ++.||+. |++.-.++- +|..-.+.++||+|...+ ..+-+.|++-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4689999999999999999999987765 4455554 555555544 467778999999998887 678888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 174 AILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 174 ~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|++|||..|++||+.+...-.+|.+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~ 113 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKH 113 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999988766666655
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.58 E-value=4.1e-15 Score=119.70 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCC-Cc------------ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG--NEQE-RS------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 165 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~--~~~~-~~------------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~ 165 (209)
-+|+++|+.+||||||+++|+. +.|. .+ ..+.|.++..+...++...+.+++|||+|+++|..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 5665 22 1345666666666676777899999999999999999
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 166 ~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
..+++++|++++|||+++. .+.....|+..+..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~ 115 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE 115 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH
Confidence 9999999999999999874 34444555665544
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.58 E-value=1.1e-14 Score=112.54 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=65.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC---CCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~---~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
-|+++|+++||||||+++|.+. .+. ++.+++..+.....+.+++ ...+++|||+|+++|......++.++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999963 343 3333333333334455542 4589999999999987766677889999999
Q ss_pred EEeCCC---hhhHHHHH
Q 028397 178 MFDLTS---RCTLNSIV 191 (209)
Q Consensus 178 vfDit~---~~Sf~~i~ 191 (209)
|||+++ .++++.+.
T Consensus 81 V~d~~~~~~~~~~~~~~ 97 (164)
T cd04171 81 VVAADEGIMPQTREHLE 97 (164)
T ss_pred EEECCCCccHhHHHHHH
Confidence 999987 55655443
No 143
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.57 E-value=3e-14 Score=111.09 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccc---------ccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP---------IAC 169 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~---------~~~ 169 (209)
+|+++|+++||||||+++|.++.+. ...+ |.+... ..+ +...+.++||||+|+........ ...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV--GHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE--EEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 7999999999999999999998875 3222 222221 122 22357899999999853211000 011
Q ss_pred ccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCceEE
Q 028397 170 KDAVAILFMFDLTSRCTL--NSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf--~~i~~wl~~i~~~~~~~~~iI 208 (209)
..+|++++|||.++.++| +....|++.+++...+.++++
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvil 118 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIV 118 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEE
Confidence 236899999999998764 677789999987654445444
No 144
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.56 E-value=2.5e-15 Score=114.48 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCc-----CCccccccccccCcEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAI 175 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e-----~~~~~~~~~~~~a~~i 175 (209)
+||+++|+++||||||+++|.++.+. +.+|.+.++. + .+|||+|+. .|..+.. .++++|++
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 38999999999999999999988763 3445554432 1 589999983 3444433 47899999
Q ss_pred EEEEeCCChhhHHHHHHHHHH
Q 028397 176 LFMFDLTSRCTLNSIVGWYSE 196 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~ 196 (209)
++|||++++.||.. ..|.+.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~ 86 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASI 86 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHh
Confidence 99999999999876 356543
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.55 E-value=4.7e-14 Score=105.36 Aligned_cols=88 Identities=26% Similarity=0.556 Sum_probs=77.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-C-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCC
Q 028397 105 LLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 182 (209)
Q Consensus 105 vlGd~~vGKTSLi~~~~~~~~-~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit 182 (209)
++|.+|+|||||++++.+... . ...++. .++........+....+.+||++|+..+......+++++|++++|||.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999887 4 444455 7887777777788899999999999988888788899999999999999
Q ss_pred ChhhHHHHHHH
Q 028397 183 SRCTLNSIVGW 193 (209)
Q Consensus 183 ~~~Sf~~i~~w 193 (209)
+..+++.+..|
T Consensus 80 ~~~~~~~~~~~ 90 (157)
T cd00882 80 DRESFENVKEW 90 (157)
T ss_pred CHHHHHHHHHH
Confidence 99999999988
No 146
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.55 E-value=4.8e-14 Score=107.29 Aligned_cols=99 Identities=20% Similarity=0.326 Sum_probs=85.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..++||.++|-.++|||+|++++.......-.||.|++. +.+..++ .+.|++||.+||...+..|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 458999999999999999999998766667778999664 4556654 6899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~ 199 (209)
|.|.+|+.-|+++..-+-++.+
T Consensus 92 VIDS~D~krfeE~~~el~ELle 113 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLE 113 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhh
Confidence 9999999999999866666543
No 147
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.55 E-value=2.8e-14 Score=115.43 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=73.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC---------cccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC 169 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~---------~~~~~~~~ 169 (209)
.++|+++|++|||||||++++.++++. ...+....+.....+.+++. ..+.+|||+|.... .... ..+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 579999999999999999999998754 33222223333444555443 37889999997321 1111 125
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
.++|++++|+|.+++.+++.+..|.+.+....
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~ 150 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELG 150 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcC
Confidence 78999999999999999999988888887664
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.52 E-value=8.1e-14 Score=108.36 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=65.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.|+++|++++|||||+++|..+++. .+.++...++....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4899999999999999999999887 333333323322333333 24678999999999999888888899999999999
Q ss_pred eCCCh
Q 028397 180 DLTSR 184 (209)
Q Consensus 180 Dit~~ 184 (209)
|.++.
T Consensus 82 d~~~~ 86 (168)
T cd01887 82 AADDG 86 (168)
T ss_pred ECCCC
Confidence 99984
No 149
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.51 E-value=1.4e-13 Score=124.27 Aligned_cols=97 Identities=15% Similarity=0.288 Sum_probs=78.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc--------cccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIA 168 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~--~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--------~~~~ 168 (209)
..+||+++|+++||||||+++|.+... ....+.+..++....+.+++. .+.+|||+|+..+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998764 355566667777778888775 4689999999765432 2457
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
++++|++++|||.+++.+++.. |+.++..
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK 308 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh
Confidence 8999999999999999998876 8877754
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.48 E-value=1.6e-13 Score=120.65 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=75.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC---------Ccccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIAC 169 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~---------~~~~~~~~~ 169 (209)
.++|+++|.++||||||+++|.+.++. ...+....+...+.+.+++. ..+.+|||+|..+ |.... .++
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 489999999999999999999998765 44333334556667777432 4788999999722 22222 247
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
.+||++++|||.+++.+++.+..|.+.+....
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~ 298 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELG 298 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhc
Confidence 89999999999999999999887877776654
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.46 E-value=4.6e-13 Score=102.94 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=69.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc------ccccccc--cCcEE
Q 028397 105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIACK--DAVAI 175 (209)
Q Consensus 105 vlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~------~~~~~~~--~a~~i 175 (209)
++|+.|||||||++++.+..+. .+.+.+..+.....+.+++ ..+.+|||+|++.+.. +...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999988755 5566666666666777776 4689999999988765 3556665 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
++|+|.++.++. ..|..++.+.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~ 100 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL 100 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc
Confidence 999999986553 3455555443
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.45 E-value=1e-12 Score=100.50 Aligned_cols=93 Identities=17% Similarity=0.289 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc--------cccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK 170 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--------~~~~~~ 170 (209)
+||+++|++|+|||||++++.+..+. ...+.+..++....+..+ ..++.+|||+|...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 334444445544455554 357899999998765432 234567
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHH
Q 028397 171 DAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 171 ~a~~illvfDit~~~Sf~~i~~wl~ 195 (209)
.+|++++|+|++++.+..+.+.|..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~ 104 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL 104 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh
Confidence 9999999999999999888776554
No 153
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.44 E-value=2.2e-13 Score=123.49 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=87.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 96 ~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
...+.++|+++||.||||||||..+...+|++..|..-..+.. -..+....+...|.|+...+.-+......+++||++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I-PadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI-PADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc-CCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 3456899999999999999999999999999666644322211 122334456688999987777666667778999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhhC---CCCceEE
Q 028397 176 LFMFDLTSRCTLNSIV-GWYSEARKWN---QGPNLMI 208 (209)
Q Consensus 176 llvfDit~~~Sf~~i~-~wl~~i~~~~---~~~~~iI 208 (209)
.++|++++++|++.++ +|++.+++.. ...|+|+
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVIL 120 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVIL 120 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEE
Confidence 9999999999999997 8999999886 4455554
No 154
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.42 E-value=1.3e-12 Score=118.32 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=74.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc--------ccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 169 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~--~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--------~~~~~ 169 (209)
.+||+++|.++||||||+++|.+.+. ....+.+..++....+.+++ ..+.+|||+|.+.+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 58999999999999999999998775 34455555566667777776 45789999998765442 23468
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHH
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~ 195 (209)
+++|++++|||.+++.++++...|..
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~ 318 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE 318 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh
Confidence 89999999999999999887766654
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=6.1e-13 Score=121.20 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC--------Ccccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIAC 169 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~--------~~~~~~~~~ 169 (209)
..||+++|.++||||||+++|.++.+. ...+.+..+.....+..++. .+.+|||+|++. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 369999999999999999999988754 33344444444455556654 578999999873 233455678
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
+++|++|+|||+++..++.. ..|.+.+++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~ 144 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR 144 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH
Confidence 99999999999999877643 344544543
No 156
>PRK04213 GTP-binding protein; Provisional
Probab=99.41 E-value=8.8e-14 Score=112.15 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=55.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCC-----------CcCCccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVP 166 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G-----------~e~~~~~~~ 166 (209)
..+||+++|.++||||||++++.++.+. .+.+.+. +....+.++ .+.+|||+| ++.++.++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 4689999999999999999999998876 4555443 333334333 589999999 566776666
Q ss_pred cccc-cCc---EEEEEEeCC
Q 028397 167 IACK-DAV---AILFMFDLT 182 (209)
Q Consensus 167 ~~~~-~a~---~illvfDit 182 (209)
.|+. +++ ++++|.|.+
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~ 101 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGK 101 (201)
T ss_pred HHHHhhhhhheEEEEEEeCc
Confidence 7765 444 555555544
No 157
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.41 E-value=1.6e-13 Score=105.11 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=86.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
.++.+.++|-..+|||||++....++|. .-.||.|++.+ .++...+.+.+||.+||.+|+.+|..||++.+++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3678999999999999999999999998 77889998754 455678999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|.|..+++.++..+.-+..+...
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k 117 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDK 117 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcc
Confidence 99999999988888777766543
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.41 E-value=1.3e-12 Score=102.15 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Ccccc---ccccccCcEEE
Q 028397 105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHV---PIACKDAVAIL 176 (209)
Q Consensus 105 vlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~---~~~~~~a~~il 176 (209)
++|++|||||||++++.+.++. ...+.+..+.....+.+++ ...+.+|||+|... .+.+. ..+++++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999988753 2222111222223344441 35679999999742 22332 23467899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHhhC
Q 028397 177 FMFDLTSR------CTLNSIVGWYSEARKWN 201 (209)
Q Consensus 177 lvfDit~~------~Sf~~i~~wl~~i~~~~ 201 (209)
+|+|.++. .+++++..|..++....
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYD 110 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhh
Confidence 99999998 68999999999887653
No 159
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.38 E-value=1.7e-12 Score=121.10 Aligned_cols=98 Identities=13% Similarity=0.235 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC-------CCC-Ccccc------eeeeeEEEEEEE-----CCeEEEEEEEecCCCcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN-------EQE-RSLQM------AGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~-------~~~-~~~~t------~g~~~~~~~~~~-----~~~~~~l~i~D~~G~e~~ 161 (209)
-+++++|..++|||||+.+|+.. .+. .+.++ .|+++....+.+ ++..+.++||||+|++.|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 37999999999999999999864 233 22222 377766655544 577799999999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~ 198 (209)
......+++.+|++|+|||.++..+++....|...+.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~ 120 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE 120 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH
Confidence 9999999999999999999999888888777765543
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=1.9e-12 Score=117.99 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=75.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCc----------CCcccc-
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHV- 165 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e----------~~~~~~- 165 (209)
...||+++|.++||||||+++|++.++. ...+.+..+.....+.+++.. +.+|||+|.. .|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 3589999999999999999999998763 555666667766777787765 4689999963 232222
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 166 ~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
..+++++|++++|||.++..|++++. |+..+..
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~ 320 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE 320 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH
Confidence 23578999999999999999998874 5555554
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.37 E-value=2.7e-12 Score=112.44 Aligned_cols=99 Identities=12% Similarity=0.220 Sum_probs=68.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc--ceeeeeEEEEEEECCeEEEEEEEecCCCcC-Cccccc-------c
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I 167 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~--t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~-~~~~~~-------~ 167 (209)
.+.+||+++|+++||||||+++|+++.+....+ .+..+.....+..++ .++.||||+|+.. +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456899999999999999999999888752112 111233334555555 4679999999853 333322 2
Q ss_pred ccccCcEEEEEEeCCChhhHHHHH-HHHHHHHhh
Q 028397 168 ACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKW 200 (209)
Q Consensus 168 ~~~~a~~illvfDit~~~Sf~~i~-~wl~~i~~~ 200 (209)
++.++|++++|+|.++ +|+++. .|++.++..
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~ 159 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL 159 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc
Confidence 4679999999999654 677775 466666654
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.37 E-value=3.7e-12 Score=114.58 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC--ccccc------ccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVP------IACKD 171 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~--~~~~~------~~~~~ 171 (209)
.+|+++|.++||||||++++.+.++. ...+....+.....+.+++. ..+.+|||+|..+. ..++. ..+++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999987764 44444444555556666543 25679999998432 22222 23689
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 172 AVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 172 a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|++|+|+|.+++.+++++..|...+...
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el 305 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEI 305 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence 99999999999999999886555544443
No 163
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=5.3e-12 Score=113.56 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC--------Cccccccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACK 170 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~--------~~~~~~~~~~ 170 (209)
.||+++|.+|||||||++++.+.+.. ...+.+..+.....+.+++ ..+.+|||+|++. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999988753 3344444455555666666 6789999999987 2223455678
Q ss_pred cCcEEEEEEeCCChhhHH--HHHHHHHH
Q 028397 171 DAVAILFMFDLTSRCTLN--SIVGWYSE 196 (209)
Q Consensus 171 ~a~~illvfDit~~~Sf~--~i~~wl~~ 196 (209)
++|++|+|+|.++..+.. .+.+|+.+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~ 107 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK 107 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999998854433 34456554
No 164
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.35 E-value=4.3e-12 Score=103.83 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc------------------ccceeeeeEEEEEEE-----CCeEEEEEEEecCCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERS------------------LQMAGLNLINKTLMV-----QGARIAFSIWDVGGD 158 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~------------------~~t~g~~~~~~~~~~-----~~~~~~l~i~D~~G~ 158 (209)
+|+++|..++|||||+.+++...+... ....|.++....+.+ ++..+.+++|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987544311 012233333333322 456799999999999
Q ss_pred cCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 159 e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
+.|......++..+|++++|+|.++..+++. ..|+..+..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~ 121 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL 121 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH
Confidence 9998888888999999999999998877643 456565544
No 165
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.33 E-value=9.8e-12 Score=108.69 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Cccccccc---cccC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDA 172 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~~~~---~~~a 172 (209)
..|.+||.++||||||++++.+.+.. ..++.+..+...-.+.++ ...++.+||++|.-+ ...+...| +..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 47899999999999999999976544 333322222222334442 234688999999742 22344444 4578
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 173 ~~illvfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
+++++|+|+++.++|++++.|.+++..+.+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~ 267 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSP 267 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999998899999999999988754
No 166
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.33 E-value=6.8e-12 Score=99.67 Aligned_cols=90 Identities=13% Similarity=0.215 Sum_probs=62.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCc----------CCccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVP 166 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e----------~~~~~~~ 166 (209)
....+|+++|++|+|||||++++++..+. .+.++.|.+.....+..++ .+.+|||+|.. .+..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 45789999999999999999999988754 4444444433322333333 68999999953 2333344
Q ss_pred ccccc---CcEEEEEEeCCChhhHHHH
Q 028397 167 IACKD---AVAILFMFDLTSRCTLNSI 190 (209)
Q Consensus 167 ~~~~~---a~~illvfDit~~~Sf~~i 190 (209)
.|++. ++++++|+|.+++-+..+.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 55554 5799999999987666555
No 167
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.32 E-value=1.2e-11 Score=107.91 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Cccccccccc---c
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---D 171 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~~~~~~---~ 171 (209)
...|.++|.++||||||++++.+.+.. ..++.+..+...-.+.+++ ..++.|||++|..+ ...+...|++ .
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 358999999999999999999987643 3333111222222344443 36789999999753 2245555544 6
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC
Q 028397 172 AVAILFMFDLTSR---CTLNSIVGWYSEARKWN 201 (209)
Q Consensus 172 a~~illvfDit~~---~Sf~~i~~wl~~i~~~~ 201 (209)
++++++|+|+++. ++++++..|.+++..+.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS 268 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence 9999999999987 78999999999998774
No 168
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.32 E-value=2.1e-11 Score=94.36 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=66.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc----------c-cc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------H-VP 166 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~----------~-~~ 166 (209)
.+||+++|++|+|||||++++.+..+. ...+.+..+.....+..++.. +.+|||+|...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 479999999999999999999987643 333433334434455555544 67999999754311 1 12
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~ 198 (209)
.++.++|++++|+|.+++.+++... ++..+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~ 110 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL 110 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH
Confidence 2467899999999999988876643 344443
No 169
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.32 E-value=1e-11 Score=95.06 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=60.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc--------ccccccccCc
Q 028397 104 SLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV 173 (209)
Q Consensus 104 vvlGd~~vGKTSLi~~~~~~~~--~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~--------~~~~~~~~a~ 173 (209)
+++|.+|||||||++++.+... ....+.+..+.....+..++ ..+.+|||+|.+.+.. ....+++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998753 23333333344444555544 6789999999988654 3345678899
Q ss_pred EEEEEEeCCChhhHHH
Q 028397 174 AILFMFDLTSRCTLNS 189 (209)
Q Consensus 174 ~illvfDit~~~Sf~~ 189 (209)
++++|+|..+..++..
T Consensus 79 ~ii~v~d~~~~~~~~~ 94 (157)
T cd01894 79 VILFVVDGREGLTPAD 94 (157)
T ss_pred EEEEEEeccccCCccH
Confidence 9999999987655544
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.32 E-value=7.8e-12 Score=98.66 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcc-cce--------------eeeeEEEEEEECCeEEEEEEEecCCCcCCccccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QMA--------------GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~-~t~--------------g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~ 166 (209)
+|+++|+.|+|||||++.+.+....... .+. +.........++.....+.+|||+|+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999988776222 111 1111111122222356899999999999888888
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
.+++.+|++++|+|.++..+.+. ..++..+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~ 112 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE 112 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH
Confidence 89999999999999998765543 344555544
No 171
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.31 E-value=1.1e-11 Score=91.58 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-cceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~-~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
+|++++|+.|||||+|+.+|..+.|. .+. +|.+ +......+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 59999999999999999999888886 333 3444 344556678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
||.++++||+++ |.+.+...++.++++
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~ 80 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPI 80 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcE
Confidence 999999999887 998887765554443
No 172
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.30 E-value=1.7e-11 Score=104.58 Aligned_cols=61 Identities=13% Similarity=0.303 Sum_probs=50.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-C----------cccceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~----------~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
..+||+++|++|+|||||++++++..+. . ..+|++.+.....+..+|..+++.+|||+|-.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg 74 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG 74 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence 3689999999999999999999998876 3 23466677777777778889999999999943
No 173
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.9e-12 Score=101.60 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=81.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC------CC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccc
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE------QE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA 168 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~------~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~ 168 (209)
....+.++++|..++|||+|+....... .. .-.+|.|.+.. ++.++ ...+.+||.+||+..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 3457899999999999999999876432 11 34567787766 44444 4678999999999999999999
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|..+|++++++|.+|++-|++.+.-++.+...
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~ 121 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVEN 121 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998777766443
No 174
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.28 E-value=1.3e-11 Score=99.17 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCC-Cc-----ccceeeeeEEEEEE----------ECCeEEEEEEEecCCCcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN----EQE-RS-----LQMAGLNLINKTLM----------VQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~----~~~-~~-----~~t~g~~~~~~~~~----------~~~~~~~l~i~D~~G~e~ 160 (209)
++|+++|+.++|||||+++|++. .+. .. ..|.+..+....+. .++....+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999972 222 11 12444444444333 124468899999999865
Q ss_pred CccccccccccCcEEEEEEeCCChhhHHHHHHH
Q 028397 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (209)
Q Consensus 161 ~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~w 193 (209)
+..........+|++++|+|.++..+.+....|
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~ 113 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL 113 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH
Confidence 422222234567899999999985554444333
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.28 E-value=3.1e-11 Score=92.44 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=57.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-C-cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc--------cccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIAC 169 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~-~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~--------~~~~~~ 169 (209)
..+|+++|..|+|||||++++.+.++. . ..+...... ...........+.+|||+|...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece--EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 579999999999999999999987654 1 111111111 1112233457889999999765432 223457
Q ss_pred ccCcEEEEEEeCCCh
Q 028397 170 KDAVAILFMFDLTSR 184 (209)
Q Consensus 170 ~~a~~illvfDit~~ 184 (209)
..+|++++|+|.++.
T Consensus 81 ~~~d~i~~v~d~~~~ 95 (168)
T cd04163 81 KDVDLVLFVVDASEP 95 (168)
T ss_pred HhCCEEEEEEECCCc
Confidence 889999999999987
No 176
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.26 E-value=2.7e-11 Score=96.78 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=61.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCc----------CCcccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e----------~~~~~~~~ 167 (209)
...||+++|++|||||||+++++++++. .+.++.|.+........ ...+.||||+|.. .+..+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 5789999999999999999999998765 55555554332222222 3679999999953 33444555
Q ss_pred ccccC---cEEEEEEeCCChhhHH
Q 028397 168 ACKDA---VAILFMFDLTSRCTLN 188 (209)
Q Consensus 168 ~~~~a---~~illvfDit~~~Sf~ 188 (209)
|++.+ +++++++|.+++.+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~ 123 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKEL 123 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHH
Confidence 66654 6788889988765543
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.25 E-value=6.3e-11 Score=106.31 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=71.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc-----------
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----------- 165 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~----------- 165 (209)
..+||+++|.++||||||++++++.+.. ...+.+..+.....+..++. .+.+|||+|..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4689999999999999999999987643 33443444444455555654 67899999986654332
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 166 ~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
..+++.+|++++|+|.++..+++... ++..+.+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~ 281 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE 281 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH
Confidence 23678999999999999988877764 4444444
No 178
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.24 E-value=3.1e-11 Score=102.33 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--Cc-ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc-cc-------cccccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE--RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DH-------VPIACK 170 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~--~~-~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~-~~-------~~~~~~ 170 (209)
+|+++|.+|||||||++++.+..+. .. ..|+.... +.+..++ ..++.+|||+|..... .+ ...++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i--~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI--SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE--EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998764 22 22443222 2222222 3568999999986432 11 234578
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 171 ~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
++|++++|+|.++..+++ ..+++.+...
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~ 106 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL 106 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhc
Confidence 999999999999988775 4555555543
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.23 E-value=9.8e-11 Score=109.15 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=71.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
....+|+++|..++|||||+++|.+.++. .+.+.+..++....+..++.. .+.||||+|++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34578999999999999999999998887 444434444444455554332 7899999999999999988999999999
Q ss_pred EEEeCCC---hhhHHHH
Q 028397 177 FMFDLTS---RCTLNSI 190 (209)
Q Consensus 177 lvfDit~---~~Sf~~i 190 (209)
+|||.++ +++++.+
T Consensus 164 LVVda~dgv~~qT~e~i 180 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI 180 (587)
T ss_pred EEEECCCCCCHhHHHHH
Confidence 9999987 4555443
No 180
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.23 E-value=5.7e-11 Score=98.74 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEE-CCeEEEEEEEecCCCcCCcc-----ccccccccCcEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFD-----HVPIACKDAVAI 175 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~-----~~~~~~~~a~~i 175 (209)
||+++|.+++||||+.+-...+-.+......|.+.....-.+ ....+.+++||++||..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 899999999999999988887655422222222222222233 23457899999999986543 356678999999
Q ss_pred EEEEeCCChhhHHH---HHHHHHHHHhhCCCCceEE
Q 028397 176 LFMFDLTSRCTLNS---IVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 176 llvfDit~~~Sf~~---i~~wl~~i~~~~~~~~~iI 208 (209)
|+|||+.+.+-.+. +...++.+.+++++..+.+
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~v 116 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFV 116 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEE
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999996554444 4466677778888776654
No 181
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.21 E-value=1.3e-10 Score=96.74 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc----c---ccccccccCc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKDAV 173 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~----~---~~~~~~~~a~ 173 (209)
+|+++|.+++|||||++++.+.... ...+....+.....+.+++ ..+++||++|+.... . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999987644 3333222333344455554 578999999985433 1 2234689999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHH
Q 028397 174 AILFMFDLTSRC-TLNSIVGWYSEA 197 (209)
Q Consensus 174 ~illvfDit~~~-Sf~~i~~wl~~i 197 (209)
++++|+|.++++ ..+.+.+.+++.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~ 104 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGV 104 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHc
Confidence 999999999866 455555555543
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=1.6e-10 Score=103.91 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEECCeEEEEEEEecCCCcC----Cccccccccc---
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK--- 170 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~~~~~~--- 170 (209)
..|.++|.++||||||++++.+.+.. ..++ |...++. .+.+++ ...+.+||++|... ...+...|++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 48999999999999999999987644 3333 2222222 233331 35689999999742 3335555544
Q ss_pred cCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCC
Q 028397 171 DAVAILFMFDLTSR---CTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 171 ~a~~illvfDit~~---~Sf~~i~~wl~~i~~~~~ 202 (209)
.++++++|+|+++. ++++++..|.+++..+.+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~ 270 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP 270 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch
Confidence 58999999999865 788999999999988753
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.18 E-value=1.1e-10 Score=104.84 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCc--------CCcccccccccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACKD 171 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e--------~~~~~~~~~~~~ 171 (209)
||+++|.++||||||++++.++... ...+.+..+.....+..++. .+.+|||+|.+ .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 6899999999999999999987743 33343333444455556654 58999999963 334455667899
Q ss_pred CcEEEEEEeCCChhhHHH--HHHHHH
Q 028397 172 AVAILFMFDLTSRCTLNS--IVGWYS 195 (209)
Q Consensus 172 a~~illvfDit~~~Sf~~--i~~wl~ 195 (209)
+|++++|+|.++.-+... +..|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~ 104 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLR 104 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999987544433 334544
No 184
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.7e-11 Score=93.76 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=83.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
...+|+++|-.|.|||+++.++.-++...+.||+|++.. ++. .++.++++||.+||-..+..|+.||.+.+++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve--~v~--yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE--TVP--YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc--ccc--cccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 578999999999999999999999999989999998765 333 3789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHH
Q 028397 179 FDLTSRCTLNSIV-GWYSEAR 198 (209)
Q Consensus 179 fDit~~~Sf~~i~-~wl~~i~ 198 (209)
.|.+|++...-.. ..+..+.
T Consensus 93 VDssd~dris~a~~el~~mL~ 113 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQ 113 (182)
T ss_pred EeccchhhhhhhHHHHHHHhc
Confidence 9999998877665 3444443
No 185
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.17 E-value=7.6e-11 Score=98.37 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--------------CCcc---cceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQ--------------ERSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~--------------~~~~---~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~ 164 (209)
+|.++|..++|||||+.+++...- .++. ...|..+......++....++++|||+|+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 478999999999999999975310 0111 12233444444455555688999999999999888
Q ss_pred cccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 165 ~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
...+++.+|++++|+|.++..+. ....|+..+++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~ 115 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL 115 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc
Confidence 88899999999999999986543 345566666554
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.17 E-value=9.7e-11 Score=111.67 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----------Ccccc-c
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-P 166 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~-~ 166 (209)
..||+++|.++||||||++++.+.+.. ...+.+..+.....+.+++.. +.+|||+|..+ |..+. .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence 489999999999999999999998753 445545556666667777765 55899999642 21111 2
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
.+++.+|++++|+|.++..+++.+. ++..+.+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~ 559 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD 559 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3468899999999999999988875 4445544
No 187
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.17 E-value=3.5e-11 Score=94.19 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=55.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc----ccccccCcEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF 177 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~----~~~~~~a~~ill 177 (209)
||+++|.++||||||++++.+ .+....++.+.++ ++. .+|||+|+......+ ...++++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~-~~~~~~~~~~v~~-------~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG-NYTLARKTQAVEF-------NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC-CCccCccceEEEE-------CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999764 4432223333322 222 269999973222111 123689999999
Q ss_pred EEeCCChhhHHHHHHHHHHH
Q 028397 178 MFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i 197 (209)
|||.++.+++ +..|+.++
T Consensus 71 v~d~~~~~s~--~~~~~~~~ 88 (158)
T PRK15467 71 VHGANDPESR--LPAGLLDI 88 (158)
T ss_pred EEeCCCcccc--cCHHHHhc
Confidence 9999999887 34566654
No 188
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.16 E-value=1.3e-10 Score=108.41 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cc----ccceeeeeEEEEEE------------ECCeEEEEEEEecCCCcCCcc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS----LQMAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSFD 163 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~----~~t~g~~~~~~~~~------------~~~~~~~l~i~D~~G~e~~~~ 163 (209)
--|+++|..++|||||+++|.+..+. .. .+++|..+...... ++.....+.||||+|++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 45899999999999999999988775 21 22345443322110 001112388999999999999
Q ss_pred ccccccccCcEEEEEEeCCC---hhhHHHHHHH
Q 028397 164 HVPIACKDAVAILFMFDLTS---RCTLNSIVGW 193 (209)
Q Consensus 164 ~~~~~~~~a~~illvfDit~---~~Sf~~i~~w 193 (209)
++..+++.+|++++|||+++ +++++.+..+
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l 117 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL 117 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH
Confidence 99999999999999999997 7787776533
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.16 E-value=1.3e-10 Score=110.36 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=72.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
...+|+++|..++|||||+.++....+. .... |.....+...+..++....+.||||+|++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4578999999999999999999988776 3332 222223333344455678999999999999999999999999999
Q ss_pred EEEEeCCC---hhhHHHHH
Q 028397 176 LFMFDLTS---RCTLNSIV 191 (209)
Q Consensus 176 llvfDit~---~~Sf~~i~ 191 (209)
|+|+|.++ +++++.+.
T Consensus 323 ILVVDA~dGv~~QT~E~I~ 341 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAIN 341 (742)
T ss_pred EEEEECcCCCChhhHHHHH
Confidence 99999987 56665554
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.16 E-value=1.9e-10 Score=107.28 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc---CCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG---NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~---~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
+.|+++|..++|||||+++|.+ +.+. ++...+..++....+..++ ..+.|||++|++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 3589999999999999999986 3444 4444555566555666665 78899999999999887778889999999
Q ss_pred EEEeCCC---hhhHHHHH
Q 028397 177 FMFDLTS---RCTLNSIV 191 (209)
Q Consensus 177 lvfDit~---~~Sf~~i~ 191 (209)
+|+|.++ +++++.+.
T Consensus 79 LVVDa~~G~~~qT~ehl~ 96 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA 96 (581)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 9999998 67776664
No 191
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.15 E-value=1.3e-10 Score=89.21 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----------Cccccccccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK 170 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~~~~~~ 170 (209)
+|+++|+.|+|||||++.+.++.+. ...++.+.+.....+..++ .+.+||++|... +......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999977666 5555656554444444443 889999998433 3344444554
Q ss_pred ---cCcEEEEEEeCCChh--hHHHHHHHHHHH
Q 028397 171 ---DAVAILFMFDLTSRC--TLNSIVGWYSEA 197 (209)
Q Consensus 171 ---~a~~illvfDit~~~--Sf~~i~~wl~~i 197 (209)
+.+++++++|.++.. ....+..|+...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~ 109 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL 109 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc
Confidence 357889999998763 333445666554
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.14 E-value=2.2e-10 Score=109.31 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=66.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC--------ccccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIA 168 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~--------~~~~~~~ 168 (209)
...+|+++|.++||||||++++++.... ...+.+..+........++ ..+.+|||+|.+.. ......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999999987654 3333333333333334444 46788999998742 2334456
Q ss_pred cccCcEEEEEEeCCChhhHHHHH-HHHHHHHh
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIV-GWYSEARK 199 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~-~wl~~i~~ 199 (209)
++.+|++|+|+|.++. +.... .|.+.+++
T Consensus 352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~ 381 (712)
T PRK09518 352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR 381 (712)
T ss_pred HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh
Confidence 8899999999999864 22332 45555554
No 193
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.14 E-value=4.7e-10 Score=107.36 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=71.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
......|+++|..++|||||+++|..+.+. .....+..+.....+.+++ ..+.||||+|++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 345678999999999999999999988776 4333333333334455554 5688999999999999999889999999
Q ss_pred EEEEeCCC---hhhHHHH
Q 028397 176 LFMFDLTS---RCTLNSI 190 (209)
Q Consensus 176 llvfDit~---~~Sf~~i 190 (209)
|||||.++ +++++.+
T Consensus 365 ILVVdAddGv~~qT~e~i 382 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI 382 (787)
T ss_pred EEEEECCCCCCHhHHHHH
Confidence 99999988 5565544
No 194
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.14 E-value=7.2e-10 Score=81.83 Aligned_cols=91 Identities=10% Similarity=0.187 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc---------ccccccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIACK 170 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~---------~~~~~~~ 170 (209)
+|+++|.+|+|||||++.+.+.... ...+..........+.+++..+ .++||+|-..-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986442 3223222222334556666655 6999999754211 1122247
Q ss_pred cCcEEEEEEeCCCh--hhHHHHHHHH
Q 028397 171 DAVAILFMFDLTSR--CTLNSIVGWY 194 (209)
Q Consensus 171 ~a~~illvfDit~~--~Sf~~i~~wl 194 (209)
.+|++++|+|.+++ ++..++.+|+
T Consensus 79 ~~d~ii~vv~~~~~~~~~~~~~~~~l 104 (116)
T PF01926_consen 79 KSDLIIYVVDASNPITEDDKNILREL 104 (116)
T ss_dssp TESEEEEEEETTSHSHHHHHHHHHHH
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999998774 2334444444
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=2.4e-10 Score=90.58 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=80.8
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC---------Cc----ccceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE---------RS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~---------~~----~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
.......||++.|+.++|||+++.++.+.... .+ ..|+..|+.... + +....+.+++|+||++|
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~-~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--L-DEDTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--E-cCcceEEEecCCCcHHH
Confidence 34567899999999999999999999977642 11 124455554332 2 23467889999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
+-+|..+++++.+.+++.|.+....| +....++.+...++
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~ 121 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP 121 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC
Confidence 99999999999999999999999999 66666666665554
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.13 E-value=4.2e-10 Score=84.95 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=64.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccc-------cccccCcEE
Q 028397 105 LLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IACKDAVAI 175 (209)
Q Consensus 105 vlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~-------~~~~~a~~i 175 (209)
++|..|+|||||++++.+.... ...+....+........+. ...+.+||++|...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976554 2222222223323333322 56899999999887654443 477899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHh
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
++|+|.++..+..... |......
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~ 102 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE 102 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh
Confidence 9999999988877776 4444443
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.12 E-value=2.2e-10 Score=107.13 Aligned_cols=97 Identities=12% Similarity=0.223 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CC-----C----Ccc---cceeeeeEEEEEEE-----CCeEEEEEEEecCCCcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN--EQ-----E----RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~--~~-----~----~~~---~t~g~~~~~~~~~~-----~~~~~~l~i~D~~G~e~~ 161 (209)
-+++++|..++|||||+.+|+.. .+ . ++. .+.|+++....+.+ ++..+.++||||+|++.|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 47999999999999999999852 11 1 111 13355555444433 566899999999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i 197 (209)
...+..+++.+|++|+|+|.++..+.+....|....
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~ 123 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL 123 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 988889999999999999999977777666665543
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.12 E-value=4.2e-10 Score=105.26 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=77.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc--CCCCCc-------------ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~--~~~~~~-------------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~ 164 (209)
.-+|+++|..++|||||+.+|.. +.|... ..+.|+++..+...++...+++++|||+|+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999996 444321 124577777777777777899999999999999999
Q ss_pred cccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 165 ~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+..+++.+|++|+|+|.++....+ ...++..+...
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~ 119 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY 119 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc
Confidence 999999999999999998753332 33444444443
No 199
>PRK00089 era GTPase Era; Reviewed
Probab=99.09 E-value=6.3e-10 Score=95.10 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=56.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-ceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc--------cccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~-t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~--------~~~~ 167 (209)
+.-.|+++|.+|||||||++++++..+. ...+ |+.... ..+... ....+.+|||+|...... ....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i--~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI--RGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE--EEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 4567999999999999999999988764 2222 322211 111112 237899999999765332 2233
Q ss_pred ccccCcEEEEEEeCCC
Q 028397 168 ACKDAVAILFMFDLTS 183 (209)
Q Consensus 168 ~~~~a~~illvfDit~ 183 (209)
.+.++|++++|+|.++
T Consensus 81 ~~~~~D~il~vvd~~~ 96 (292)
T PRK00089 81 SLKDVDLVLFVVDADE 96 (292)
T ss_pred HHhcCCEEEEEEeCCC
Confidence 5678999999999998
No 200
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.08 E-value=6.2e-10 Score=94.48 Aligned_cols=98 Identities=9% Similarity=0.127 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-C-C----------------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE-Q-E----------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~-~-~----------------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
-+|+++|..++|||||+++++... . . ++.+ ..|.++......++...+++++|||+|++
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 368999999999999999997421 0 0 1111 11444445555666667899999999999
Q ss_pred CCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 160 ~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
+|......+++.+|++++|+|.++... .....|+.....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~ 121 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL 121 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh
Confidence 888777778899999999999987533 223345544443
No 201
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.07 E-value=6.6e-10 Score=89.93 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccccceee-eeEEEEEEEC-CeEEEEEEEecCCCcCCccccccc-----ccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL-NLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIA-----CKD 171 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~-~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~-----~~~ 171 (209)
.+||+++|++|+|||||++.+.+..+. ....+++. +.......+. .....+.+||++|..........| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 379999999999999999999987665 33334441 1110110111 112368999999986543322233 677
Q ss_pred CcEEEEEEeCCChhhHHHHH-HHHHHHHhh
Q 028397 172 AVAILFMFDLTSRCTLNSIV-GWYSEARKW 200 (209)
Q Consensus 172 a~~illvfDit~~~Sf~~i~-~wl~~i~~~ 200 (209)
+|+++++.| ++|.+.. .|++.+++.
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~ 106 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM 106 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh
Confidence 899888743 3455554 677777765
No 202
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.05 E-value=9.4e-10 Score=102.68 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=68.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----cceeeeeEEEEEEE--CCeEE----------EEEEEecCCCcCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLMV--QGARI----------AFSIWDVGGDSRS 161 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~-----~t~g~~~~~~~~~~--~~~~~----------~l~i~D~~G~e~~ 161 (209)
....|+++|..++|||||++++.+....... +++|..+....... .+... .+.||||+|++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4567999999999999999999866543222 24454433221100 11111 2689999999999
Q ss_pred ccccccccccCcEEEEEEeCCC---hhhHHHHHHH
Q 028397 162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGW 193 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~---~~Sf~~i~~w 193 (209)
..++...+..+|++++|+|.++ +++++.+..+
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~ 119 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL 119 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH
Confidence 9988888899999999999998 8888877543
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.04 E-value=5.4e-10 Score=100.63 Aligned_cols=89 Identities=10% Similarity=0.157 Sum_probs=64.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhc--CCCC-C-----------------------------cccceeeeeEEEEEEEC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVG--NEQE-R-----------------------------SLQMAGLNLINKTLMVQ 144 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~--~~~~-~-----------------------------~~~t~g~~~~~~~~~~~ 144 (209)
....++|+++|..++|||||+.+++. +... . ....+..+... ..+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 44579999999999999999999985 2221 0 01122233333 3344
Q ss_pred CeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhH
Q 028397 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 187 (209)
Q Consensus 145 ~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf 187 (209)
...+.+.|||++|+++|.......+.++|++++|+|.++.+++
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 4467899999999998866555567899999999999998754
No 204
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.04 E-value=1.3e-09 Score=99.62 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=68.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Ccccccc---cccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPI---ACKD 171 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~~~---~~~~ 171 (209)
..+|++||.++||||||++++.+.+.. ..++.+..+...-.+.+++ ..+.|||++|... ...+... ++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 458999999999999999999977654 3334222222333444444 5789999999632 2222222 3567
Q ss_pred CcEEEEEEeCCC----hhhHHHHHHHHHHHHhhC
Q 028397 172 AVAILFMFDLTS----RCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 172 a~~illvfDit~----~~Sf~~i~~wl~~i~~~~ 201 (209)
++++|+|+|+++ ++.++.+..|..++..+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~ 270 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA 270 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence 899999999986 456777777777776654
No 205
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.03 E-value=1.4e-09 Score=101.65 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=65.5
Q ss_pred cCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc------ccccc--ccCcEEEE
Q 028397 107 GDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF 177 (209)
Q Consensus 107 Gd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~------~~~~~--~~a~~ill 177 (209)
|+++||||||++++.+..+. .+.+.+..+.....+.+++. ++++|||+|++.+... .+.|+ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998876 66777777777667777664 4789999999887654 33443 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~ 199 (209)
|+|.++.+ +..+|..++.+
T Consensus 79 VvDat~le---r~l~l~~ql~~ 97 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLE 97 (591)
T ss_pred EecCCcch---hhHHHHHHHHh
Confidence 99998743 23344444443
No 206
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.5e-10 Score=88.36 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=82.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
+.-|++++|-.++|||||++.+.+++.....||.-.... .+.+. +++++.+|.+|+..-+..|..|+..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE--~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH--Hheec--CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 356999999999999999999999988777676644322 33443 47889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|.-|.+-|.+.+.-++.+...
T Consensus 95 vda~d~er~~es~~eld~ll~~ 116 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSD 116 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhH
Confidence 9999999999999877776443
No 207
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.02 E-value=2e-09 Score=96.91 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=67.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc----------c-
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------V- 165 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~----------~- 165 (209)
..+||+++|.+++|||||++++++.+.. ...+.+..+.....+..++. .+.+|||+|......+ .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4699999999999999999999976532 44443434444344445554 4678999996543221 1
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 166 ~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
..+++.+|++|+|+|.++..+.+... ++..+.+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~ 282 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE 282 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH
Confidence 23578899999999999988877654 3344433
No 208
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.01 E-value=1.9e-09 Score=93.66 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=58.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-Cc------ccceeeeeEEEE---------------EEECC-eEEEEEEEecCCC-
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQE-RS------LQMAGLNLINKT---------------LMVQG-ARIAFSIWDVGGD- 158 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~~-~~------~~t~g~~~~~~~---------------~~~~~-~~~~l~i~D~~G~- 158 (209)
|.++|.++||||||++++.+.++. .. .|++|..+.... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999988754 22 334444332111 11233 3478999999998
Q ss_pred ---cCCccccccc---cccCcEEEEEEeCCC
Q 028397 159 ---SRSFDHVPIA---CKDAVAILFMFDLTS 183 (209)
Q Consensus 159 ---e~~~~~~~~~---~~~a~~illvfDit~ 183 (209)
+++..+...| +++||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5566666665 899999999999973
No 209
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.99 E-value=2.1e-09 Score=96.74 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=61.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------Cccc---ceeeeeEEEEEEECCeE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---------------------------RSLQ---MAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~---------------------------~~~~---t~g~~~~~~~~~~~~~~ 147 (209)
...++|+++|..++|||||+.+++...-. +..+ .-|.........++...
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45799999999999999999999832110 0000 12333222333444456
Q ss_pred EEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 148 ~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
+.+.||||+|++.|.......+..+|++++|+|.++.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~ 120 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA 120 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC
Confidence 7899999999998865444556889999999999874
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.98 E-value=4.1e-09 Score=101.08 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=68.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc----------ccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~----------~~~ 167 (209)
+.+||+++|.++||||||++++.+.... .+. .|.++..+.-.++....++++||++|...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 3579999999999999999999977654 333 444444444455555678899999999876532 122
Q ss_pred cc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 168 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 168 ~~--~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+ .++|++++|+|.++.+. ...|..++.+.
T Consensus 80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~ 111 (772)
T PRK09554 80 YILSGDADLLINVVDASNLER---NLYLTLQLLEL 111 (772)
T ss_pred HHhccCCCEEEEEecCCcchh---hHHHHHHHHHc
Confidence 33 47999999999998654 33466666554
No 211
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.96 E-value=3.1e-09 Score=87.90 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--C----------Cccc---ceeeeeEEE--EEEEC--------CeEEEEEEEecC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQ--E----------RSLQ---MAGLNLINK--TLMVQ--------GARIAFSIWDVG 156 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~--~----------~~~~---t~g~~~~~~--~~~~~--------~~~~~l~i~D~~ 156 (209)
.|+++|..+.|||||+.+++...- . +..+ ..|+..... .+.++ +..+.+++|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999974321 1 0000 112222211 22222 457899999999
Q ss_pred CCcCCccccccccccCcEEEEEEeCCChhhHHHHHHH
Q 028397 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (209)
Q Consensus 157 G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~w 193 (209)
|++.|......+++.+|++++|||+++..+.+....|
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l 118 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL 118 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999999999988776654333
No 212
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.95 E-value=4.6e-09 Score=93.64 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-ce-eeeeEEEEEEECCeEEEEEEEecCCCcCCc----cccc---cccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MA-GLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVP---IACK 170 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~-t~-g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~----~~~~---~~~~ 170 (209)
..|.++|-++||||||++++.+.+.. ..+| |+ ...+. .+..++ ...+.++|++|..+-. .+.. ..+.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 37999999999999999999976644 3333 22 22222 333332 2358899999975311 1111 2367
Q ss_pred cCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhC
Q 028397 171 DAVAILFMFDLT---SRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 171 ~a~~illvfDit---~~~Sf~~i~~wl~~i~~~~ 201 (209)
.++++++|+|++ +.+.++++..|++++..+.
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~ 270 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYS 270 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence 899999999998 6678899999999998874
No 213
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.94 E-value=2.1e-09 Score=87.63 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=55.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-C--------------------------ccc---ceeeeeEEEEEEECCeEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-R--------------------------SLQ---MAGLNLINKTLMVQGARIAFS 151 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~--------------------------~~~---t~g~~~~~~~~~~~~~~~~l~ 151 (209)
+|+++|..++|||||+.+++...-. . ..+ .-|.........+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999743211 1 000 012222212222222345778
Q ss_pred EEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 152 i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
+|||+|+++|.......++.+|++|+|+|.++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 999999988765555667899999999999875
No 214
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.94 E-value=2.7e-09 Score=99.76 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCc-------------ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~--~~~~~~-------------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~ 166 (209)
+|+++|..++|||||+.+++. +.+... ....|+++..+...++...++++||||+|++.|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999985 334311 11336666666666666678999999999999988888
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
.+++.+|++++|+|.++. .+.....|+..+...+
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~ 116 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELG 116 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCC
Confidence 899999999999999863 3445567777776654
No 215
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.94 E-value=1.3e-09 Score=87.27 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEE-CCeEEEEEEEecCCCcCCcccccc---ccccCcEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAIL 176 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~---~~~~a~~il 176 (209)
--|+++|++|+|||+|..++.++.+..+...+..+. .+.+ +...-.+.+.|++|+++.+..... +..++.+||
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 358999999999999999999997775544442221 1222 233456889999999998764333 478899999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhh---CCCCceEE
Q 028397 177 FMFDLTS-RCTLNSIVGWYSEARKW---NQGPNLMI 208 (209)
Q Consensus 177 lvfDit~-~~Sf~~i~~wl~~i~~~---~~~~~~iI 208 (209)
+|.|.+. ...+.++.+++-++... .++.++|+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piL 116 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPIL 116 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEE
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEE
Confidence 9999874 55666666666555332 23455544
No 216
>PRK13351 elongation factor G; Reviewed
Probab=98.92 E-value=2.1e-09 Score=102.19 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=71.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------------CC-Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNE-------------QE-RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~-------------~~-~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
...+|+++|..++|||||+.+|+... +. ++.+ ..+..+......+......+++|||+|+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 35799999999999999999998421 11 1111 1122222222233334678999999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
......+++.+|++++|+|.++..+++....|. .+..
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~ 123 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR 123 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh
Confidence 888889999999999999999988877666563 3443
No 217
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.90 E-value=3.7e-09 Score=89.43 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=62.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-Ccc------cc----------eeeeeEEEEEEECCeEEEEEEEecCCCcCCccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSL------QM----------AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~------~t----------~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~ 164 (209)
+|+++|.+|+|||||+++++...-. ... .+ .+.........+....+++++|||+|...|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 4899999999999999998743211 000 00 011111122222223467899999999888777
Q ss_pred cccccccCcEEEEEEeCCChhhHHHHHHH
Q 028397 165 VPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (209)
Q Consensus 165 ~~~~~~~a~~illvfDit~~~Sf~~i~~w 193 (209)
...+++.+|++++|+|.++.........|
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~ 109 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW 109 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH
Confidence 78889999999999999987665544444
No 218
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.89 E-value=1.3e-08 Score=90.87 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc------ceeeeeEEEEE---------------EECC-eEEEEEEEecCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ------MAGLNLINKTL---------------MVQG-ARIAFSIWDVGG 157 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~------t~g~~~~~~~~---------------~~~~-~~~~l~i~D~~G 157 (209)
+||.++|.++||||||++++.+.++. ..++ +.|..+....+ ..++ ..+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988776 3333 33332211000 0122 337899999999
Q ss_pred C----cCCccccccc---cccCcEEEEEEeCC
Q 028397 158 D----SRSFDHVPIA---CKDAVAILFMFDLT 182 (209)
Q Consensus 158 ~----e~~~~~~~~~---~~~a~~illvfDit 182 (209)
. +....+...| ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 4455566667 88999999999997
No 219
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.86 E-value=3.3e-08 Score=77.47 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc------ccccccc--cc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIAC--KD 171 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~------~~~~~~~--~~ 171 (209)
++|+++|.++||||||++++.+.+.. .+.|-+..+.....+.+++ ..+.+.|++|.-... .+...|+ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999998866 6666555566666677766 567899999953322 2333443 58
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 172 AVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 172 a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.|+++.|.|.++.+.-. +...++.+.
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~ 104 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLEL 104 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHc
Confidence 99999999999854322 344455444
No 220
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.85 E-value=8.9e-09 Score=83.67 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---C-Ccc--cceeeeeEEEEEE-----------------------EC--C----
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQ---E-RSL--QMAGLNLINKTLM-----------------------VQ--G---- 145 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~---~-~~~--~t~g~~~~~~~~~-----------------------~~--~---- 145 (209)
++|.++|..|+|||||+..+..-.. . +.. .++...+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4689999999999999999864311 1 100 0111111100000 00 1
Q ss_pred eEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh----hhHHHHHHH
Q 028397 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGW 193 (209)
Q Consensus 146 ~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~----~Sf~~i~~w 193 (209)
....+.||||+|++.|.......+.++|++++|+|.+++ ++++.+..|
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~ 132 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL 132 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH
Confidence 126789999999998876666667788999999999873 455555444
No 221
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.85 E-value=1.4e-08 Score=87.61 Aligned_cols=85 Identities=24% Similarity=0.263 Sum_probs=55.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc-------cc
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI 167 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~-------~~ 167 (209)
+...++|+++|.+||||||+++++++.+.. ...++.+..........+| .++.++||+|........ ..
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 456899999999999999999999987642 2222222222212223344 678999999987543221 11
Q ss_pred cc--ccCcEEEEEEeCCC
Q 028397 168 AC--KDAVAILFMFDLTS 183 (209)
Q Consensus 168 ~~--~~a~~illvfDit~ 183 (209)
|. .+.|++|+|.+++.
T Consensus 113 ~l~~~g~DvVLyV~rLD~ 130 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDA 130 (313)
T ss_pred HhhcCCCCEEEEEeccCc
Confidence 11 26899999976653
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.84 E-value=8.5e-09 Score=95.22 Aligned_cols=100 Identities=10% Similarity=0.100 Sum_probs=70.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCC--------------C--Cccc---ceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQ--------------E--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~--~~~--------------~--~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
..-+|+++|..++|||||+.+++. +.. . ++.+ ..|+.+......++...+++++|||+|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999963 110 0 1111 224445545555555568899999999
Q ss_pred CcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 158 ~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
++.|......+++.+|++|+|+|.++.-.- ....++...+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~ 129 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL 129 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh
Confidence 999988777788999999999999875322 23455554444
No 223
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.81 E-value=1.6e-08 Score=93.37 Aligned_cols=100 Identities=10% Similarity=0.079 Sum_probs=70.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc-CCCC-----------------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG-NEQE-----------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~-~~~~-----------------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
...+|+++|..++|||||+.+++. .... ++.+ ..|+.+......++...+.+++|||+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 467999999999999999999852 1111 1111 235555555566666678999999999
Q ss_pred CcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 158 ~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
++.|......+++.+|++|+|+|.++.- ......|++..+.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~ 130 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL 130 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh
Confidence 9988877777889999999999998741 1223455554443
No 224
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.79 E-value=5.1e-08 Score=87.35 Aligned_cols=85 Identities=21% Similarity=0.384 Sum_probs=67.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc--------ccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPI 167 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--------~~~ 167 (209)
...+|++++|.++||||||+|.+.+.+-. ...+-+.-|+-...+.++| +.+.+.||+|..+.... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 34799999999999999999999987755 6667555566667788887 56778999998765443 234
Q ss_pred ccccCcEEEEEEeCCCh
Q 028397 168 ACKDAVAILFMFDLTSR 184 (209)
Q Consensus 168 ~~~~a~~illvfDit~~ 184 (209)
...+||.+++|+|.+.+
T Consensus 293 ~i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 293 AIEEADLVLFVLDASQP 309 (454)
T ss_pred HHHhCCEEEEEEeCCCC
Confidence 57899999999999985
No 225
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.76 E-value=2e-08 Score=95.98 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=65.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC---------------CCC-C---cccceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN---------------EQE-R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~---------------~~~-~---~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
...+|+++|..++|||||+.+|+.. .+. + ...|+..........+++..+.+.+|||+|+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3579999999999999999999742 121 1 11134333333444567778999999999999
Q ss_pred CCccccccccccCcEEEEEEeCCCh
Q 028397 160 RSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 160 ~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
+|.......++.+|++|+|+|.++.
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCC
Confidence 9988888889999999999999874
No 226
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.69 E-value=1.3e-07 Score=76.18 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--cceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc--------c---cc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------H---VP 166 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~--~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~--------~---~~ 166 (209)
.+|+++|.+|||||||++.+++.+.. ... +....+.......+++ ..+.+.||+|-..... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987643 221 1111122222334444 4688999999654321 1 11
Q ss_pred cccccCcEEEEEEeCCC
Q 028397 167 IACKDAVAILFMFDLTS 183 (209)
Q Consensus 167 ~~~~~a~~illvfDit~ 183 (209)
....+.|++|+|.|+.+
T Consensus 79 ~~~~g~~~illVi~~~~ 95 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR 95 (196)
T ss_pred hcCCCCEEEEEEEECCC
Confidence 22467899999999886
No 227
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.69 E-value=1.4e-07 Score=79.32 Aligned_cols=84 Identities=24% Similarity=0.275 Sum_probs=53.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc---c-------c
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H-------V 165 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~---~-------~ 165 (209)
...++|+++|.+|||||||++.+.+.... ...+.............++ .++.+|||+|-..... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 44799999999999999999999987653 2221111122222233344 5689999999765421 1 1
Q ss_pred ccccc--cCcEEEEEEeCCC
Q 028397 166 PIACK--DAVAILFMFDLTS 183 (209)
Q Consensus 166 ~~~~~--~a~~illvfDit~ 183 (209)
..|+. ..+++++|..++.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHhccCCCEEEEEEcCCC
Confidence 22332 5788888876654
No 228
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.68 E-value=3.3e-08 Score=88.66 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=57.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCccc------ceeeeeEE----------------EEEEECC------eEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ------MAGLNLIN----------------KTLMVQG------ARIAF 150 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~------t~g~~~~~----------------~~~~~~~------~~~~l 150 (209)
..++|+++|..++|||||+..+.+.....+.. |+...+.. .....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 57899999999999999999996432211111 12211110 0000011 14678
Q ss_pred EEEecCCCcCCccccccccccCcEEEEEEeCCC
Q 028397 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 151 ~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~ 183 (209)
.+||++|+++|..........+|++++|+|.++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 999999999987776666778899999999995
No 229
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.67 E-value=1.2e-07 Score=89.06 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=60.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc---CCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVG---NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~---~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
-|.++|..++|||||+++|.+ +.+. +....+.++.....+...+ ...+.||||+|+++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 478999999999999999985 3333 2212222222222232322 2347899999999987666666889999999
Q ss_pred EEeCCC---hhhHHHHH
Q 028397 178 MFDLTS---RCTLNSIV 191 (209)
Q Consensus 178 vfDit~---~~Sf~~i~ 191 (209)
|+|.++ +++.+.+.
T Consensus 81 VVda~eg~~~qT~ehl~ 97 (614)
T PRK10512 81 VVACDDGVMAQTREHLA 97 (614)
T ss_pred EEECCCCCcHHHHHHHH
Confidence 999987 66666553
No 230
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.63 E-value=7.6e-08 Score=79.13 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=55.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---------------------------CCCccc---ceeeeeEEEEEEECCeEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE---------------------------QERSLQ---MAGLNLINKTLMVQGARIAFS 151 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~---------------------------~~~~~~---t~g~~~~~~~~~~~~~~~~l~ 151 (209)
.|+++|..++|||||+.+++... +.++.+ .-|.........+.....++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 47899999999999999986311 001111 112222222333333457899
Q ss_pred EEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 152 i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
+|||+|+..|.......+..+|++++|+|.++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999887765555556789999999999984
No 231
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.62 E-value=1.6e-07 Score=83.86 Aligned_cols=87 Identities=10% Similarity=0.168 Sum_probs=60.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC-----C--C----C-Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN-----E--Q----E-RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~-----~--~----~-~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
....++|+++|..++|||||+.++.+. + + . +..+ ..|.......+.++.....+.||||+|+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 345799999999999999999999732 0 1 0 1111 1243333444555555678899999999987
Q ss_pred ccccccccccCcEEEEEEeCCC
Q 028397 162 FDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~ 183 (209)
..........+|++++|+|.++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 6444334567799999999987
No 232
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.62 E-value=2.5e-07 Score=80.37 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=43.7
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARK 199 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~----------~Sf~~i~~wl~~i~~ 199 (209)
.+.+.+||++||...+..|..||.+++++++|.|+++. +.+++....++.+.+
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999974 455555555555543
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.58 E-value=1.6e-07 Score=79.94 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~--~~~~------------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~ 164 (209)
+|.++|..++|||||+++++. +.-. ++.+ ..|.........+.-...++.+|||+|...|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 478999999999999999973 1100 1111 1133332222333233578899999999888877
Q ss_pred cccccccCcEEEEEEeCCCh
Q 028397 165 VPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 165 ~~~~~~~a~~illvfDit~~ 184 (209)
...+++.+|++++|.|.++.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g 100 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAG 100 (270)
T ss_pred HHHHHHHcCEEEEEEECCCC
Confidence 88889999999999999774
No 234
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.58 E-value=2.4e-07 Score=75.07 Aligned_cols=85 Identities=11% Similarity=0.170 Sum_probs=60.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-------CC-----Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNE-------QE-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~-------~~-----~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~ 164 (209)
.++|.++|-.++|||||+.++.... .. +..+ .-|.........+......+.+.||+|...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999997531 00 1111 2233343344444445567889999999887666
Q ss_pred cccccccCcEEEEEEeCCCh
Q 028397 165 VPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 165 ~~~~~~~a~~illvfDit~~ 184 (209)
....+..+|++++|.|.+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG 101 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC
Confidence 66667889999999998764
No 235
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.58 E-value=9.7e-08 Score=76.43 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=67.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-Cc-------------c-----cceeeeeEEEEEEECCeEEEEEEEecCCCcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS-------------L-----QMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~-------------~-----~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
..+|+++|..++|||||+.++....-. .. . .....+.....+..+.....+.++|++|+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 578999999999999999999854321 00 0 0111222222222125567899999999998
Q ss_pred CccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 161 ~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|........+.+|++|+|.|..+.-.-+ ....+..+...+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~~ 122 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRELG 122 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHTT
T ss_pred eeecccceecccccceeeeecccccccc-cccccccccccc
Confidence 8777777788999999999998653322 233444444443
No 236
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.57 E-value=6.3e-07 Score=82.09 Aligned_cols=105 Identities=10% Similarity=0.180 Sum_probs=83.6
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccC
Q 028397 94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (209)
Q Consensus 94 ~~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a 172 (209)
.+.+.+-+++.++|+.++|||.|++.|.++.+. .+..+....+....+.+.|+.-.+.+-|..-. ....+...- ..+
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 444566899999999999999999999999888 66667777777777777888888888888755 333333333 678
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 173 VAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 173 ~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|++.++||++++.||+.+...++.-...
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~ 524 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL 524 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc
Confidence 9999999999999999998777666554
No 237
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.55 E-value=7e-08 Score=79.54 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=70.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-C---cccceeeeeEEEEEEECCeEEEEEEEecCCCcCC-----ccccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK 170 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~---~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~-----~~~~~~~~~ 170 (209)
.-||+++|-+|+||||+-.-+..+... + .-.|+.++.. .+.+- .++.|++||++|||.+ ....+..++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs--h~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS--HVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh--hhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 469999999999999987766644322 1 1123333221 22222 3578999999999953 335566789
Q ss_pred cCcEEEEEEeCCChhhHHHHH---HHHHHHHhhCCCCceEE
Q 028397 171 DAVAILFMFDLTSRCTLNSIV---GWYSEARKWNQGPNLMI 208 (209)
Q Consensus 171 ~a~~illvfDit~~~Sf~~i~---~wl~~i~~~~~~~~~iI 208 (209)
+.++.+++||+...+=-..+. +-++.+.++.+.+.+++
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~ 121 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFC 121 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEE
Confidence 999999999999885544444 45566677777766654
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=98.54 E-value=4.1e-07 Score=81.34 Aligned_cols=87 Identities=10% Similarity=0.179 Sum_probs=61.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC-------CCC-----Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGN-------EQE-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~-------~~~-----~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~ 162 (209)
...++|+++|-.++|||||+.++++. .+. +..+ ..|.........+......+.|+||+|+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45799999999999999999999852 110 1111 22444333344444445678999999998876
Q ss_pred cccccccccCcEEEEEEeCCCh
Q 028397 163 DHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 163 ~~~~~~~~~a~~illvfDit~~ 184 (209)
.....-...+|++++|+|.++.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCC
Confidence 5444556788999999999874
No 239
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.52 E-value=2.3e-07 Score=71.05 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
+++++|.+|||||||++++.+.++.......|.+.....+.+++ .+.||||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999888753333344444445556654 5789999984
No 240
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.52 E-value=2.3e-07 Score=83.43 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=58.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc------cceeeeeEEEEE----------------EEC--C----eEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL------QMAGLNLINKTL----------------MVQ--G----ARI 148 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~------~t~g~~~~~~~~----------------~~~--~----~~~ 148 (209)
....++|+++|..++|||||+..+.+....... -|+...+....+ .++ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 345799999999999999999988542111111 122222111000 011 1 136
Q ss_pred EEEEEecCCCcCCccccccccccCcEEEEEEeCCC----hhhHHHHH
Q 028397 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIV 191 (209)
Q Consensus 149 ~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~----~~Sf~~i~ 191 (209)
.+.||||+|++.|....-.....+|++++|+|.++ .++++.+.
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~ 132 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM 132 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH
Confidence 78999999998775433333345699999999994 45555444
No 241
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.52 E-value=5.8e-07 Score=80.43 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc---------ccccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIAC 169 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~---------~~~~~~~ 169 (209)
..|+++|-++||||||.||+++.+.. +..|-+.-|-........+.. +.+.||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999988766 445533223333445555554 8899999987533 2234456
Q ss_pred ccCcEEEEEEeCCC
Q 028397 170 KDAVAILFMFDLTS 183 (209)
Q Consensus 170 ~~a~~illvfDit~ 183 (209)
..||++|||+|...
T Consensus 82 ~eADvilfvVD~~~ 95 (444)
T COG1160 82 EEADVILFVVDGRE 95 (444)
T ss_pred HhCCEEEEEEeCCC
Confidence 78999999999876
No 242
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.51 E-value=7.4e-07 Score=76.29 Aligned_cols=92 Identities=13% Similarity=0.249 Sum_probs=62.4
Q ss_pred CCCCCCCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc---
Q 028397 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQER---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--- 163 (209)
Q Consensus 90 ~~~~~~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~---~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~--- 163 (209)
.+.++..+.+.+.|+++|.++||||+|.|++++.+... ...|+--+. .-.+......+.|+||+|.-.-..
T Consensus 62 esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i---lgi~ts~eTQlvf~DTPGlvs~~~~r~ 138 (379)
T KOG1423|consen 62 ESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI---LGIITSGETQLVFYDTPGLVSKKMHRR 138 (379)
T ss_pred cCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee---eEEEecCceEEEEecCCcccccchhhh
Confidence 34455667789999999999999999999999887651 122332111 111234567899999999532111
Q ss_pred ---------ccccccccCcEEEEEEeCCCh
Q 028397 164 ---------HVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 164 ---------~~~~~~~~a~~illvfDit~~ 184 (209)
--......||++++++|+++.
T Consensus 139 ~~l~~s~lq~~~~a~q~AD~vvVv~Das~t 168 (379)
T KOG1423|consen 139 HHLMMSVLQNPRDAAQNADCVVVVVDASAT 168 (379)
T ss_pred HHHHHHhhhCHHHHHhhCCEEEEEEeccCC
Confidence 112335679999999999974
No 243
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.51 E-value=3.2e-07 Score=87.46 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=67.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~--~~~------------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~ 162 (209)
--+|.++|-.++|||||++++... ... ++.+ ..|+........+.-...++.+|||+|+.+|.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 458999999999999999999731 110 0000 11222222222232235788999999999988
Q ss_pred cccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 163 ~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.....+++.+|++++|+|.++....+...-| ..+++.
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~ 126 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY 126 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc
Confidence 7788889999999999999986665544333 344443
No 244
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.50 E-value=5.4e-07 Score=79.13 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=43.6
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARK 199 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~----------~Sf~~i~~wl~~i~~ 199 (209)
.+.+.+||++||...+..|..||.+++++++|.|+++- ..+++....++.+.+
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999999973 456666666666654
No 245
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.50 E-value=9.6e-08 Score=86.84 Aligned_cols=100 Identities=22% Similarity=0.389 Sum_probs=82.9
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
.....++|+-++|+.++|||+|+++|+.+.|.....+.|..|. +++.++++...+-+.|.+|.. ...|....|+
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k-kE~vv~gqs~lLlirdeg~~~-----~aQft~wvda 98 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK-KEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDA 98 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCCcCccce-eeEEeeccceEeeeecccCCc-----hhhhhhhccc
Confidence 3446789999999999999999999999999966677776654 777888999999999988833 3457788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 175 ILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 175 illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+||||.+.+.++|+.++.+..++..+
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~ 124 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSY 124 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccc
Confidence 99999999999999998776665433
No 246
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.50 E-value=4.7e-07 Score=74.95 Aligned_cols=97 Identities=10% Similarity=0.146 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccc------------------------ceeeeeEE---------------EEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ------------------------MAGLNLIN---------------KTLM 142 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~------------------------t~g~~~~~---------------~~~~ 142 (209)
||+++|+.++|||||+.+|..+.|..... ..|.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999877752100 01111100 0111
Q ss_pred ECCeEEEEEEEecCCCcCCcccccccc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 143 VQGARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 143 ~~~~~~~l~i~D~~G~e~~~~~~~~~~--~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
.....+.+.|++|+++|.......+ ..+|++++|.|.+...+ ..-..++..+....
T Consensus 81 --~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~ 138 (224)
T cd04165 81 --KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALN 138 (224)
T ss_pred --eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcC
Confidence 1235688999999998754333333 36899999999876533 22234444444443
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.48 E-value=1.9e-07 Score=78.72 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=65.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeeEEE-EEEECCeEEEEEEEecCCCcC-------Ccccccc
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINK-TLMVQGARIAFSIWDVGGDSR-------SFDHVPI 167 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~-~~~t~g~~~~~~-~~~~~~~~~~l~i~D~~G~e~-------~~~~~~~ 167 (209)
....++++++|..|+|||||+|.+++++..+ ..-..+.+.... ...+++ -.+.+||++|-++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 3457899999999999999999999776552 111122221111 112233 4588999999876 5555667
Q ss_pred ccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 168 ~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
++...|.++.+.|..|+.==-. .+++.++.-.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~ 145 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL 145 (296)
T ss_pred HhhhccEEEEeccCCCccccCC-HHHHHHHHHh
Confidence 7889999999999888732111 2445555433
No 248
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.47 E-value=1.4e-06 Score=75.12 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=67.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Cc---ccccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SF---DHVPIACKD 171 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~---~~~~~~~~~ 171 (209)
...++++|.++||||||++.+.+-+.. ..++.+..+.-.-.+.++| .++|+.|++|.-. -+ ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 468999999999999999999987776 5555443333334455555 6788999986422 11 123345689
Q ss_pred CcEEEEEEeCCChhh-HHHHHHHHHHH
Q 028397 172 AVAILFMFDLTSRCT-LNSIVGWYSEA 197 (209)
Q Consensus 172 a~~illvfDit~~~S-f~~i~~wl~~i 197 (209)
||.+++|.|+....+ .+.+.+-+++.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~ 167 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDV 167 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhc
Confidence 999999999997766 55555555553
No 249
>PLN03126 Elongation factor Tu; Provisional
Probab=98.44 E-value=8.9e-07 Score=80.99 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=66.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC------CCC-C-----c---ccceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE-R-----S---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~------~~~-~-----~---~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
....++|+++|..++|||||+.+++.. ... . . ....|+........++.....+.++|++|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 355789999999999999999999851 111 0 0 112233333333333334557889999999988
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
......-...+|++++|+|.++-..- ...+++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~g 196 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQVG 196 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC
Confidence 66555556789999999998864322 2234444454443
No 250
>PRK12736 elongation factor Tu; Reviewed
Probab=98.42 E-value=1.1e-06 Score=78.59 Aligned_cols=87 Identities=10% Similarity=0.162 Sum_probs=60.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC-------CC-----Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~-------~~-----~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
....++|+++|..++|||||+.++.+.. +. +..+ ..|.........++.....+.++||+|+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3457999999999999999999998521 10 0001 2244433334445445567889999999887
Q ss_pred ccccccccccCcEEEEEEeCCC
Q 028397 162 FDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~ 183 (209)
....-.-...+|++++|+|.++
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 6544444567899999999986
No 251
>COG1159 Era GTPase [General function prediction only]
Probab=98.40 E-value=1.8e-06 Score=73.66 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=59.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-ceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc--------ccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP 166 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~-t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~--------~~~ 166 (209)
.+.--|.++|-++||||||+|++++.... ...+ |+-... +.+... .+..+.+.||+|-.+-+. ...
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I--~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhe--eEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 45667999999999999999999988765 3333 443222 122222 267889999999765322 234
Q ss_pred cccccCcEEEEEEeCCCh
Q 028397 167 IACKDAVAILFMFDLTSR 184 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~ 184 (209)
..+.++|+++||.|.+..
T Consensus 81 ~sl~dvDlilfvvd~~~~ 98 (298)
T COG1159 81 SALKDVDLILFVVDADEG 98 (298)
T ss_pred HHhccCcEEEEEEecccc
Confidence 457889999999998874
No 252
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.39 E-value=9.8e-07 Score=68.37 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=40.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
..+++++|.++||||||++++.++......++.|.+.....+..++ .+.+|||+|
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 5788999999999999999999766545556666544333333333 689999998
No 253
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.37 E-value=3.7e-06 Score=72.57 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccccce--eeeeEEEEEEECCeEEEEEEEecCCCcC--Ccccccc------c
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPI------A 168 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~--g~~~~~~~~~~~~~~~~l~i~D~~G~e~--~~~~~~~------~ 168 (209)
...|+|.|-++||||||++.+.+-+-. ..+|.+ ++.+. .+. .....+|+.||+|.-. ...+++. .
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HFE--RGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--eee--cCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 578999999999999999999988877 666622 43322 232 3346789999999532 1111111 1
Q ss_pred cc-cCcEEEEEEeCCChhh--HHHHHHHHHHHHhhCC
Q 028397 169 CK-DAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQ 202 (209)
Q Consensus 169 ~~-~a~~illvfDit~~~S--f~~i~~wl~~i~~~~~ 202 (209)
++ =+++|+|+||.+..+- .+.=...+++|+..-.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~ 280 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK 280 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence 11 2589999999987654 4555688999988766
No 254
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.35 E-value=1.9e-06 Score=70.57 Aligned_cols=80 Identities=23% Similarity=0.208 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--cceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc--------cc---c
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV---P 166 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~--~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~--------~~---~ 166 (209)
++|+++|..|+||||+++.+++.... ... ....-.+......++|. .+.++||+|-..... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987754 221 11112233334466774 467999999533211 11 1
Q ss_pred cccccCcEEEEEEeCC
Q 028397 167 IACKDAVAILFMFDLT 182 (209)
Q Consensus 167 ~~~~~a~~illvfDit 182 (209)
....+.|+||+|..++
T Consensus 79 ~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HTTT-ESEEEEEEETT
T ss_pred hccCCCeEEEEEEecC
Confidence 2345789999999988
No 255
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.34 E-value=2.3e-06 Score=77.74 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=65.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC--------------------------C-Cccc---ceeeeeEEEEEEECCe
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ--------------------------E-RSLQ---MAGLNLINKTLMVQGA 146 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~--------------------------~-~~~~---t~g~~~~~~~~~~~~~ 146 (209)
....+.++++|..++|||||+-+++...- . +..+ ..|+........+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34578999999999999999988863110 0 1111 1133333334445556
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHH
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 188 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~ 188 (209)
...+.+.|++|+++|.......+..+|++|+|+|.++ .+|+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e 124 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFE 124 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Ccee
Confidence 6789999999999998888888899999999999987 4454
No 256
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.34 E-value=2.4e-06 Score=73.17 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=42.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-Cc----------ccceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS----------LQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~----------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
..++|+|+|++|+|||||++.+++.... .. ..+..+......+.-++..+.|.|+||+|-
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 3689999999999999999999987655 21 012334443444555788999999999984
No 257
>CHL00071 tufA elongation factor Tu
Probab=98.34 E-value=2.6e-06 Score=76.47 Aligned_cols=88 Identities=10% Similarity=0.161 Sum_probs=60.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------C-----c---ccceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-------R-----S---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-------~-----~---~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
....++|+++|-.++|||||++++++..-. . . ...-|.........+......+.+.||+|+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 455799999999999999999999863110 0 0 001233333333334444567789999998877
Q ss_pred ccccccccccCcEEEEEEeCCCh
Q 028397 162 FDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~ 184 (209)
.......+..+|++++|.|.+..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCC
Confidence 65555566789999999998763
No 258
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=9.6e-07 Score=71.94 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccc---cCcEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM 178 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~---~a~~illv 178 (209)
.|+++|..++|||+|..++.++.+..+.+.+..+.. .+.++... ..+.|.+|+++.+.-...|+. .+-+++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 589999999999999999999987755555544433 23333333 788999999987766666666 78999999
Q ss_pred EeCC-ChhhHHHHHHHHHHHH-hh--CCCCceEE
Q 028397 179 FDLT-SRCTLNSIVGWYSEAR-KW--NQGPNLMI 208 (209)
Q Consensus 179 fDit-~~~Sf~~i~~wl~~i~-~~--~~~~~~iI 208 (209)
.|.. ...-...+..++-++. .. ..+.++++
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 9764 2333444545544443 33 35555554
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.7e-06 Score=78.02 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=68.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC-Ccc--------cccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFD--------HVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~-~~~--------~~~~ 167 (209)
..++|+++|.++||||||+|.+.+.+-. ...+-+.-|.....++++| +++.+.||+|-.+ -.. ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4689999999999999999999988765 4444333344445566776 4566799999755 111 1233
Q ss_pred ccccCcEEEEEEeC--CChhhHHHHHHHHHHHH
Q 028397 168 ACKDAVAILFMFDL--TSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 168 ~~~~a~~illvfDi--t~~~Sf~~i~~wl~~i~ 198 (209)
-.+.+|++++|+|. ++-++-..+.+.++...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~ 377 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEG 377 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhc
Confidence 46789999999999 55555555556666553
No 260
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.31 E-value=1.6e-06 Score=68.44 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=41.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
..++++++|.++||||||++++.+..+....+..+.+.....+.++ ..+.+|||+|-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3579999999999999999999988775333333333444444554 35789999983
No 261
>PTZ00258 GTP-binding protein; Provisional
Probab=98.30 E-value=5.3e-06 Score=73.95 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=56.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCe---------------EEEEEEEecCCCcCC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS 161 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~---------------~~~l~i~D~~G~e~~ 161 (209)
...+||.++|-++||||||++.+.+.... ..+|.+..+...-.+.+.+. ...+++.|++|-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34679999999999999999999876655 44453333333333443322 235899999995431
Q ss_pred ----ccccccc---cccCcEEEEEEeCC
Q 028397 162 ----FDHVPIA---CKDAVAILFMFDLT 182 (209)
Q Consensus 162 ----~~~~~~~---~~~a~~illvfDit 182 (209)
..+...+ ++++|++++|.|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1222222 56799999999973
No 262
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.29 E-value=1e-06 Score=68.01 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCc----CCccccccccccCcEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACKDAVAILF 177 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e----~~~~~~~~~~~~a~~ill 177 (209)
||+++|..|+|||||++++.+.+. .+..|..+++.... .||+|.- .|....-....+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~~~~------------IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYYDNT------------IDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEecccE------------EECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 899999999999999999987655 34445555544332 4666621 111112222357788888
Q ss_pred EEeCCChhh
Q 028397 178 MFDLTSRCT 186 (209)
Q Consensus 178 vfDit~~~S 186 (209)
+.|.+++.+
T Consensus 70 l~dat~~~~ 78 (143)
T PF10662_consen 70 LQDATEPRS 78 (143)
T ss_pred EecCCCCCc
Confidence 887776543
No 263
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.27 E-value=5.9e-06 Score=75.35 Aligned_cols=99 Identities=20% Similarity=0.370 Sum_probs=73.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEEC--CeEEEEEEEecCCCcCCcccccccccc----Cc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKD----AV 173 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~--~~~~~l~i~D~~G~e~~~~~~~~~~~~----a~ 173 (209)
.-.|+|+|+.++|||||+.+|.+.+ +..++.|.+|....+.-+ +....+.+|...|...+..+.+..+.. --
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 4689999999999999999987543 345677777765544332 234678999999877777766655543 25
Q ss_pred EEEEEEeCCChhhH-HHHHHHHHHHHhh
Q 028397 174 AILFMFDLTSRCTL-NSIVGWYSEARKW 200 (209)
Q Consensus 174 ~illvfDit~~~Sf-~~i~~wl~~i~~~ 200 (209)
.+|||.|++.+.++ +.+.+|+.-++++
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~ 130 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREH 130 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHH
Confidence 78889999999885 4688999888765
No 264
>PRK00049 elongation factor Tu; Reviewed
Probab=98.25 E-value=5.4e-06 Score=74.18 Aligned_cols=102 Identities=9% Similarity=0.102 Sum_probs=66.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------C-----Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ-------E-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~-------~-----~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~ 162 (209)
...++|+++|-.++|||||+.++..... . +..+ .-|.........+......+.+.||+|+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5579999999999999999999986211 0 0011 22333333344444445677899999998876
Q ss_pred cccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 163 ~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.........+|++++|.|.++.-. .....++..+...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~ 126 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV 126 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc
Confidence 555556789999999999876422 2223344444443
No 265
>PRK12740 elongation factor G; Reviewed
Probab=98.21 E-value=2.4e-06 Score=81.18 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=60.7
Q ss_pred EcCCCCCHHHHHHHHhcCCC--------C------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccc
Q 028397 106 LGDCQIGKTSFVVKYVGNEQ--------E------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA 168 (209)
Q Consensus 106 lGd~~vGKTSLi~~~~~~~~--------~------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~ 168 (209)
+|..++|||||+.++....- . +..+ .-|+.+......+....+.+.+|||+|+..|......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 58899999999999953210 0 1100 11222222222333345789999999999887777788
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHH
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWY 194 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl 194 (209)
++.+|++++|+|.++..+++....|.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~ 106 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWR 106 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHH
Confidence 89999999999999877766555443
No 266
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.20 E-value=5.1e-06 Score=76.04 Aligned_cols=87 Identities=14% Similarity=0.210 Sum_probs=57.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--C---------------------------ccc---ceeeeeEEEEEEECC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--R---------------------------SLQ---MAGLNLINKTLMVQG 145 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~---------------------------~~~---t~g~~~~~~~~~~~~ 145 (209)
...++|+++|-.++|||||+.+++...-. . ..+ .-|+........+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45699999999999999999999743211 1 000 012222222222333
Q ss_pred eEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 146 ~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
....+.|+||+|++.|......-...+|++++|+|.+..
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 456788999999988854444446899999999998753
No 267
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.20 E-value=8.5e-06 Score=76.51 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-CC-Ccc--cceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc-------c---c
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNE-QE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------H---V 165 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~-~~-~~~--~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~-------~---~ 165 (209)
.++|+++|.+||||||+++.+++.. |. ... .|+.. .......++ ..+.++||+|-..... + .
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 6899999999999999999999876 43 221 23332 112223444 5689999999775321 1 1
Q ss_pred ccccc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 166 PIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 166 ~~~~~--~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
..++. ..|++|+|..++......+-..+++.|.+.
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~l 230 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDV 230 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHH
Confidence 12333 589999999887544432333556665544
No 268
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=1.7e-05 Score=71.17 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=64.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----------Cccc-c
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDH-V 165 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~-~ 165 (209)
..+||+++|-++||||||++++.+.+-. ...+-+..|.....++.++++ +.+.||+|-.+ |.-. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999988765 555544445555667777765 56799999653 2111 1
Q ss_pred ccccccCcEEEEEEeCCChhhHHH
Q 028397 166 PIACKDAVAILFMFDLTSRCTLNS 189 (209)
Q Consensus 166 ~~~~~~a~~illvfDit~~~Sf~~ 189 (209)
......+|++++|.|.+..-+-+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHH
Confidence 223567899999999998755443
No 269
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.19 E-value=3.1e-06 Score=75.96 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--C---------------------------ccc---ceeeeeEEEEEEECCeEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--R---------------------------SLQ---MAGLNLINKTLMVQGARI 148 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~---------------------------~~~---t~g~~~~~~~~~~~~~~~ 148 (209)
++|+++|..++|||||+.+++...-. . ..+ .-|+........+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999632110 0 000 012222222222333445
Q ss_pred EEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 149 ~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
++.|+||+|+++|......-+..+|++++|+|.+..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 788999999998865444567899999999998754
No 270
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.18 E-value=2.1e-05 Score=69.51 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCe---------------EEEEEEEecCCCcCC---
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS--- 161 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~---------------~~~l~i~D~~G~e~~--- 161 (209)
++|.++|-++||||||++.+.+.... ..+|.+..+...-.+.+.+. ...+++.|++|-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987754 44443332222223333332 135899999996431
Q ss_pred -ccccccc---cccCcEEEEEEeCC
Q 028397 162 -FDHVPIA---CKDAVAILFMFDLT 182 (209)
Q Consensus 162 -~~~~~~~---~~~a~~illvfDit 182 (209)
..+...+ ++.+|++++|.|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222222 57899999999984
No 271
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.16 E-value=6.7e-06 Score=70.11 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=53.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCe---------------EEEEEEEecCCCcCC----c
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS----F 162 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~---------------~~~l~i~D~~G~e~~----~ 162 (209)
|.++|.++||||||++.+.+.... ..+|.+..+...-.+.+.+. ...+++.|++|--.- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 468999999999999999987765 44553333333334444432 235899999995431 1
Q ss_pred cccccc---cccCcEEEEEEeCC
Q 028397 163 DHVPIA---CKDAVAILFMFDLT 182 (209)
Q Consensus 163 ~~~~~~---~~~a~~illvfDit 182 (209)
.+...| ++++|+++.|.|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 222233 46799999999863
No 272
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.15 E-value=5.5e-06 Score=78.30 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=56.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-C-c-----------ccc-------------------eeeeeEEEEEEECCe
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R-S-----------LQM-------------------AGLNLINKTLMVQGA 146 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~-~-----------~~t-------------------~g~~~~~~~~~~~~~ 146 (209)
..++|+++|..++|||||+.+++...-. . . .-+ -|.........+...
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 4578999999999999999999853211 1 0 000 011111111222233
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
..++.|+||+|++.|..........+|++++|+|.++.
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 45678999999988754444456789999999998754
No 273
>PLN03127 Elongation factor Tu; Provisional
Probab=98.14 E-value=1.8e-05 Score=71.92 Aligned_cols=88 Identities=9% Similarity=0.161 Sum_probs=59.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC------CCC------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~------~~~------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
....++|+++|-.++|||||+.++.+- ... +..+ .-|.........+......+.+.||+|+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 345789999999999999999999621 110 0000 1233333334445445567899999999887
Q ss_pred ccccccccccCcEEEEEEeCCCh
Q 028397 162 FDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~ 184 (209)
......-...+|++++|.|.++.
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 55444445679999999998754
No 274
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.13 E-value=1.8e-05 Score=61.51 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=41.3
Q ss_pred EEEEEecCCCcC----CccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCC
Q 028397 149 AFSIWDVGGDSR----SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQG 203 (209)
Q Consensus 149 ~l~i~D~~G~e~----~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~~ 203 (209)
.+.|.|++|-.. ...+...|+..+|++|+|.+.++..+-.....|.+........
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 578999998743 3356788889999999999999876656666676666655443
No 275
>PRK12739 elongation factor G; Reviewed
Probab=98.10 E-value=6.6e-06 Score=78.55 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=60.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CC------C------Cc-----ccceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQ------E------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~~------~------~~-----~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
...+|.++|-.++|||||+++++.. .. . ++ ...+.++.....+..+ ..++.++||+|+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCHH
Confidence 3578999999999999999999742 10 0 11 1111222222333343 4678999999998
Q ss_pred CCccccccccccCcEEEEEEeCCChhh
Q 028397 160 RSFDHVPIACKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 160 ~~~~~~~~~~~~a~~illvfDit~~~S 186 (209)
.|.......++.+|++++|+|.++.-.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~ 111 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVE 111 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCC
Confidence 887777788899999999999987543
No 276
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.07 E-value=6.5e-06 Score=72.87 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=48.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccccceeee---eEEEEEEECCeEEEEEEEecCCCcCCccccccc-----c
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLN---LINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----C 169 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~---~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~-----~ 169 (209)
..++|.|.|++|+|||||||.+.+-.-. +....+|.. .....+.. ...-.+.+||.+|-.....-...| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4789999999999999999999753322 222333321 11111111 122248899999965433222222 4
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHH-HHHHhh
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWY-SEARKW 200 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl-~~i~~~ 200 (209)
...|.||++.+ +.|....-|+ .++++.
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~ 140 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQRM 140 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHHT
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHHc
Confidence 56799998876 3455554433 334443
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.07 E-value=1.8e-05 Score=71.87 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=62.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------Cccc---ceeeeeEEEEEEECCe
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN--EQE-------------------------RSLQ---MAGLNLINKTLMVQGA 146 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~--~~~-------------------------~~~~---t~g~~~~~~~~~~~~~ 146 (209)
....++|+++|..++|||||+.+++.. ... +..+ ..|.........+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 345789999999999999999998751 100 1111 1133333333344555
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
...+.|.|++|+++|......-...+|++++|.|.++-
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 67899999999999876666667899999999998763
No 278
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.07 E-value=2e-05 Score=68.27 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEEC--CeEEEEEEEecCCCcCCccccccccccC----c
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDA----V 173 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~--~~~~~l~i~D~~G~e~~~~~~~~~~~~a----~ 173 (209)
.-.|+|+||.++|||||+.++-+.+ .+.+-.|.+|....+.-+ +...++.+|-..|.-....+....+... .
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 4679999999999999999998766 344556666654444432 3347888999988776665555444332 4
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHHHhhC
Q 028397 174 AILFMFDLTSRC-TLNSIVGWYSEARKWN 201 (209)
Q Consensus 174 ~illvfDit~~~-Sf~~i~~wl~~i~~~~ 201 (209)
.+|++.|++++. -++.+++|..-++++.
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehi 158 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHI 158 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 778889999994 4677899998887763
No 279
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.06 E-value=1.3e-05 Score=62.19 Aligned_cols=55 Identities=13% Similarity=0.261 Sum_probs=36.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
.++|+++|.+|||||||++++.+.......++.|.......+..+. .+.+.||+|
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 5789999999999999999999876543223333222222223322 267899988
No 280
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.04 E-value=1.8e-05 Score=67.39 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=41.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
..++++++|.++||||||++++.+.......+..|.+.....+.++. .+.++||+|.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 46899999999999999999999876543233334333334445543 4689999997
No 281
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.00 E-value=1.7e-05 Score=63.05 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=38.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
..++++++|-++||||||++++.+.......+..|.......+.++. .+.++||+|
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 35899999999999999999999876542223333333333444432 478999998
No 282
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.97 E-value=2.7e-05 Score=66.75 Aligned_cols=58 Identities=12% Similarity=0.290 Sum_probs=41.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
..++++++|.++||||||++.+.+.+.....+..|.+.....+.+++ .+.++||+|--
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 46899999999999999999999877543333334333333444443 47799999974
No 283
>PRK00007 elongation factor G; Reviewed
Probab=97.92 E-value=2.8e-05 Score=74.33 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=60.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~--~~~~------------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~ 162 (209)
-.+|.++|-.++|||||+++++. +... ++.+ .-|+........+.-....+++.||+|...|.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 46999999999999999999973 2110 1111 11222222222222234678899999988776
Q ss_pred cccccccccCcEEEEEEeCCChhhHHHHHHH
Q 028397 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (209)
Q Consensus 163 ~~~~~~~~~a~~illvfDit~~~Sf~~i~~w 193 (209)
......++.+|++++|.|.+..-.-+...-|
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~~~ 120 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQSETVW 120 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhhHHHH
Confidence 5555667889999999998765444443333
No 284
>COG2262 HflX GTPases [General function prediction only]
Probab=97.90 E-value=0.00012 Score=64.92 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=70.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC--ccccccc------c
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPIA------C 169 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~--~~~~~~~------~ 169 (209)
....|.++|=.++|||||+|.+.+.... ++.-..-.+...+.+.+.+ .-.+-+-||.|--+- ..+...| .
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 3568999999999999999999966544 3333334455567777764 345678899984321 1122222 3
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
..||.++.|.|.+++...+.+..-.+-+.+.
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el 300 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEI 300 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHc
Confidence 6799999999999998877777666666655
No 285
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.88 E-value=8.8e-05 Score=69.52 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=62.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc------cccccccc-
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK- 170 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~------~~~~~~~~- 170 (209)
+..+|.++|+++||||||.|++.+.... .+.|-+.++-..-.+..++. ++++.|.+|--... ...+.|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3567999999999999999999988776 76665555544445555554 48899999854322 23344443
Q ss_pred -cCcEEEEEEeCCChhh
Q 028397 171 -DAVAILFMFDLTSRCT 186 (209)
Q Consensus 171 -~a~~illvfDit~~~S 186 (209)
+.|+++-|.|.+|.+-
T Consensus 80 ~~~D~ivnVvDAtnLeR 96 (653)
T COG0370 80 GKPDLIVNVVDATNLER 96 (653)
T ss_pred CCCCEEEEEcccchHHH
Confidence 5699999999998754
No 286
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.88 E-value=8.4e-05 Score=65.15 Aligned_cols=80 Identities=16% Similarity=0.327 Sum_probs=57.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-C----------cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~----------~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~ 166 (209)
...+.|+++|++|.|||||++.+++.... + ..+++.+......+.-++..+.|++.||+|-..+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~----- 95 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF----- 95 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc-----
Confidence 35799999999999999999999976433 1 1234455555556666889999999999995543
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHH
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSE 196 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl~~ 196 (209)
++|..+|+-+..++++
T Consensus 96 --------------idNs~~we~I~~yI~~ 111 (373)
T COG5019 96 --------------IDNSKCWEPIVDYIDD 111 (373)
T ss_pred --------------ccccccHHHHHHHHHH
Confidence 3555667666655544
No 287
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.87 E-value=4.1e-05 Score=62.02 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=57.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeeEEEEEEECCeEEEEEEEecCCC----------cCCcccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~-~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~----------e~~~~~~~~ 167 (209)
...-|+++|-++|||||||+.+++.+- .....|-|-+-...-+.+++. +.+.|.+|- +.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 456899999999999999999999763 344445554433334455554 778999883 334455556
Q ss_pred cccc---CcEEEEEEeCCChhh
Q 028397 168 ACKD---AVAILFMFDLTSRCT 186 (209)
Q Consensus 168 ~~~~---a~~illvfDit~~~S 186 (209)
|++. -.+++++.|....-.
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~ 121 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPK 121 (200)
T ss_pred HHhhchhheEEEEEEECCCCCc
Confidence 6543 467778888866533
No 288
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.82 E-value=0.00012 Score=60.61 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=51.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~-~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
....|+++|.+|+|||+|++.+....-.. .....|. + .+ ......++.+.||+|.- ..+. ...+.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 45789999999999999999988642211 1111221 1 11 11235667899999853 2222 23578999999
Q ss_pred EEeCCChh
Q 028397 178 MFDLTSRC 185 (209)
Q Consensus 178 vfDit~~~ 185 (209)
+.|.+...
T Consensus 110 viDa~~~~ 117 (225)
T cd01882 110 LIDASFGF 117 (225)
T ss_pred EEecCcCC
Confidence 99987543
No 289
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=9.2e-05 Score=65.13 Aligned_cols=62 Identities=11% Similarity=0.308 Sum_probs=46.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCc----------ccceeeeeEEEEEEECCeEEEEEEEecCCCcC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~----------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
..|.++++|++|.|||||++.++...+... ..+..++.....+.-+|..+.|++.||+|-..
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 469999999999999999999887655421 11444554444555578999999999999554
No 290
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.80 E-value=8.6e-05 Score=71.43 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=64.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC------------Cccc---ceeeeeEE----EEEEECCeEEEEEEEecCCCcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE------------RSLQ---MAGLNLIN----KTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~------------~~~~---t~g~~~~~----~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
.-+|+++|..++|||||+.+++...-. ++.+ .-|+.+.. ..+..++....+.+.||+|+..
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 457999999999999999999742110 1111 00121111 1223355678899999999999
Q ss_pred CccccccccccCcEEEEEEeCCChhhHHHHHHHHH
Q 028397 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 161 ~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~ 195 (209)
|.......++.+|++|+|.|....-.-+.-..|..
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~ 134 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ 134 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH
Confidence 88777778899999999999876543333334443
No 291
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.78 E-value=4.8e-05 Score=60.86 Aligned_cols=54 Identities=13% Similarity=0.317 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--------cccceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~--------~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
..++++|.+|||||||++.+.+..... ..+..|.+.....+.++. .+.++||+|
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 579999999999999999999754311 111113333333444443 478999998
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=97.78 E-value=8.4e-05 Score=72.47 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=64.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------------CCccc---ceeeeeEE--EEEEEC--------CeEEEEEEEe
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQ------------ERSLQ---MAGLNLIN--KTLMVQ--------GARIAFSIWD 154 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~------------~~~~~---t~g~~~~~--~~~~~~--------~~~~~l~i~D 154 (209)
.-+|+++|..++|||||+.+++...- .++.+ ..|+.+.. ..+..+ +....+.+.|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 34899999999999999999985211 01111 01222111 122222 2367899999
Q ss_pred cCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 155 ~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+|+.+|.......++.+|++|+|.|.++.-.-+.-.-| ..+.+.
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~ 143 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE 143 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc
Confidence 999999877777778999999999998875333332333 444443
No 293
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.74 E-value=8e-05 Score=73.66 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCHHHHHHHHhcCCCCCcc-----cceeeeeEEEEEEECC-e----------E-----EEEEEEecCCCcCCcccccccc
Q 028397 111 IGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLMVQG-A----------R-----IAFSIWDVGGDSRSFDHVPIAC 169 (209)
Q Consensus 111 vGKTSLi~~~~~~~~~~~~-----~t~g~~~~~~~~~~~~-~----------~-----~~l~i~D~~G~e~~~~~~~~~~ 169 (209)
|+||||+..+.+....+.. +.+|.. .+..+. . . -.+.||||+|++.|..+....+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~----~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~ 547 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGAT----EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGG 547 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceE----EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhc
Confidence 5699999999877665211 123332 222221 0 1 1389999999999988888888
Q ss_pred ccCcEEEEEEeCCC---hhhHHHHHH
Q 028397 170 KDAVAILFMFDLTS---RCTLNSIVG 192 (209)
Q Consensus 170 ~~a~~illvfDit~---~~Sf~~i~~ 192 (209)
..+|++++|+|+++ +++++.+..
T Consensus 548 ~~aDivlLVVDa~~Gi~~qT~e~I~~ 573 (1049)
T PRK14845 548 SLADLAVLVVDINEGFKPQTIEAINI 573 (1049)
T ss_pred ccCCEEEEEEECcccCCHhHHHHHHH
Confidence 99999999999997 777777653
No 294
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.68 E-value=0.00011 Score=64.19 Aligned_cols=58 Identities=12% Similarity=0.277 Sum_probs=43.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
....++.++|-++|||||||+++.+..-....+.-|.+-....+.++.. +.++||+|-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 4458899999999999999999998876533333355544455555543 889999994
No 295
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.63 E-value=0.00012 Score=71.42 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=64.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------------CCccc---ceeeeeEE--EEEEE--------------CCeEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQ------------ERSLQ---MAGLNLIN--KTLMV--------------QGARI 148 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~------------~~~~~---t~g~~~~~--~~~~~--------------~~~~~ 148 (209)
.-+|+++|..++|||||+.+++...- .++.+ ..|+.+.. ..+.. ++..+
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 45899999999999999999974321 01111 11222221 11221 22367
Q ss_pred EEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHH
Q 028397 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 149 ~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~ 195 (209)
.+++.||+|+..|.......++.+|++|+|.|.++--.-+...-|..
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~ 145 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ 145 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH
Confidence 88999999999997777777899999999999987644443344443
No 296
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.63 E-value=0.00031 Score=58.08 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=53.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCC-C-c--ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc------cccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-R-S--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPI 167 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~--~~~-~-~--~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~------~~~~ 167 (209)
-.=|.++|..++|||+|++++.+. .|. . . ..|.|+......+.. +....+.+.||.|...... ..-.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 456889999999999999999998 776 2 2 225565544333222 3457899999999764322 1122
Q ss_pred cccc--CcEEEEEEeCCCh
Q 028397 168 ACKD--AVAILFMFDLTSR 184 (209)
Q Consensus 168 ~~~~--a~~illvfDit~~ 184 (209)
.+.. ++++|+..+-+..
T Consensus 86 ~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHhCEEEEeccCccc
Confidence 2233 6777766555443
No 297
>PRK13768 GTPase; Provisional
Probab=97.60 E-value=9.5e-05 Score=62.29 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=27.9
Q ss_pred EEEEEecCCCcCC---cccccccccc-----CcEEEEEEeCCChhhHHH
Q 028397 149 AFSIWDVGGDSRS---FDHVPIACKD-----AVAILFMFDLTSRCTLNS 189 (209)
Q Consensus 149 ~l~i~D~~G~e~~---~~~~~~~~~~-----a~~illvfDit~~~Sf~~ 189 (209)
.+.+||++|+.+. +.....+++. ++++++++|.+...+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d 146 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSD 146 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHH
Confidence 6889999998763 3333333332 899999999976544433
No 298
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.60 E-value=0.00086 Score=56.47 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC------Cc-ccccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR------SF-DHVPIACKD 171 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~------~~-~~~~~~~~~ 171 (209)
.-+|+++|-++||||||+..+...... ..+..+..+...-.++++|.+ +++.|.+|.-+ -+ ...-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence 578999999999999999999876665 444544455556677777765 67789876422 11 122234578
Q ss_pred CcEEEEEEeCCChhhHHH-HHHHHHHH
Q 028397 172 AVAILFMFDLTSRCTLNS-IVGWYSEA 197 (209)
Q Consensus 172 a~~illvfDit~~~Sf~~-i~~wl~~i 197 (209)
||.+++|.|.+..+--.+ +++-++.+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 999999999998766554 34566665
No 299
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.58 E-value=0.00035 Score=58.34 Aligned_cols=61 Identities=13% Similarity=0.320 Sum_probs=47.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC----------CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE----------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~----------~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
.|+|+|+|.+|.|||||++.+...... .+..|+.+...+..+.-++...+|++.||+|-..
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 789999999999999999998754332 1222556666667777789999999999999543
No 300
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.47 E-value=0.00039 Score=53.84 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=35.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
....++++|.++||||||++.+.+..-. ...+.+..+. ..+.++ ..+.+.||+|
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 3578999999999999999999976532 2222111111 122332 2478899998
No 301
>PRK12289 GTPase RsgA; Reviewed
Probab=97.41 E-value=0.00029 Score=62.25 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
-++|+|.+|||||||+|.+..+.-
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 379999999999999999996543
No 302
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.38 E-value=0.0016 Score=56.37 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=66.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Ccccccccc---ccCc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAV 173 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~~~~~---~~a~ 173 (209)
.+-+||-+++|||||++.+...+-. ..++.+...-..-++.+++.. .+.+=|.+|.-+ -+.+-..|+ ..++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4568999999999999999876544 333322111111244444433 388889887543 233444443 4689
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhh
Q 028397 174 AILFMFDLTSR---CTLNSIVGWYSEARKW 200 (209)
Q Consensus 174 ~illvfDit~~---~Sf~~i~~wl~~i~~~ 200 (209)
..++|.|++.. +-++.++....|+..+
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y 306 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELY 306 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999998 8888888887887666
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.37 E-value=0.0015 Score=58.76 Aligned_cols=103 Identities=14% Similarity=0.228 Sum_probs=65.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC----CCC-------------C-----cccceeeee---EEEEEEE-CCeEEEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN----EQE-------------R-----SLQMAGLNL---INKTLMV-QGARIAFSIW 153 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~----~~~-------------~-----~~~t~g~~~---~~~~~~~-~~~~~~l~i~ 153 (209)
.+-|.++|..++|||||+++|++. ... + +..|+..-| ....+.. ++....+.+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999976 222 0 111222222 2222322 5777889999
Q ss_pred ecCCCcCC-----cc--c----------------------cccccc-cCcEEEEEE-eCC----ChhhHHHHH-HHHHHH
Q 028397 154 DVGGDSRS-----FD--H----------------------VPIACK-DAVAILFMF-DLT----SRCTLNSIV-GWYSEA 197 (209)
Q Consensus 154 D~~G~e~~-----~~--~----------------------~~~~~~-~a~~illvf-Dit----~~~Sf~~i~-~wl~~i 197 (209)
||+|-..- .. - ++..+. .++..|+|. |-+ .++.+.+.. +|++++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99985321 10 0 223344 788888887 553 245566664 789998
Q ss_pred HhhCC
Q 028397 198 RKWNQ 202 (209)
Q Consensus 198 ~~~~~ 202 (209)
++.+.
T Consensus 177 k~~~k 181 (492)
T TIGR02836 177 KELNK 181 (492)
T ss_pred HhcCC
Confidence 87654
No 304
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00059 Score=60.79 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=61.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------ccc---ceeeeeEEEEEEECCe
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN--EQER-------------------------SLQ---MAGLNLINKTLMVQGA 146 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~--~~~~-------------------------~~~---t~g~~~~~~~~~~~~~ 146 (209)
....++++++|.-.+|||||+-+++.. .+.. ... .-|+.+......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 345799999999999999999998641 1110 000 1144444444455556
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
.+.+.|.|++|+..|-.-.-.-..+||+.+||.|..+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~ 121 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG 121 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC
Confidence 67899999999877755444445789999999998876
No 305
>PRK12288 GTPase RsgA; Reviewed
Probab=97.33 E-value=0.00026 Score=62.38 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--Ccccc---eee--eeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t---~g~--~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
-++++|.+|||||||+|.+....-. ...+. .|- ......+.+++. ..+.||+|-..+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 3789999999999999999976543 22211 111 111223344322 248899986654
No 306
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00086 Score=56.40 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=59.3
Q ss_pred EEEEEcCCCC--CHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC--CeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 102 KISLLGDCQI--GKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 102 KIvvlGd~~v--GKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~--~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
-++|+|-+|| ||-+|++++....|. +..+....+++.+++.-. ...+.+.|.-... +.+-... .......+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lpn~-~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLPNA-EIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccCCc-ccccceeeEE
Confidence 4688999999 999999999998888 444444444554444221 1223333332221 2221111 1123457999
Q ss_pred EEEeCCChhhHHHHHHHHH
Q 028397 177 FMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~ 195 (209)
++||++....+..++.|++
T Consensus 84 mvfdlse~s~l~alqdwl~ 102 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLP 102 (418)
T ss_pred EEEeccchhhhHHHHhhcc
Confidence 9999999999999999998
No 307
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.32 E-value=0.00024 Score=55.92 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
--++++|.+|||||||+|.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999763
No 308
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.32 E-value=0.00028 Score=62.01 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=33.9
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
...+.++|++||..-+.-|.+++.+++++|||.++++-
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY 231 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY 231 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence 47889999999988888888899999999999999854
No 309
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.32 E-value=0.00083 Score=59.56 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-C-CcccceeeeeEEEEEEECCe---------------EEEEEEEecCCCcC---
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR--- 160 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~-~-~~~~t~g~~~~~~~~~~~~~---------------~~~l~i~D~~G~e~--- 160 (209)
+|+-++|.++||||||.+.+.+... . .++|...++...-.+.+.+. ...+++.|.+|--.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998876 5 44452222222233444332 24678999998543
Q ss_pred -Ccccccc---ccccCcEEEEEEeCC
Q 028397 161 -SFDHVPI---ACKDAVAILFMFDLT 182 (209)
Q Consensus 161 -~~~~~~~---~~~~a~~illvfDit 182 (209)
-..+... ..+++|+++.|.|..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222222 357899999999884
No 310
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.28 E-value=0.00058 Score=57.27 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
-.++++|.+|||||||++.+.+..-
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4789999999999999999997643
No 311
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.24 E-value=0.00054 Score=57.43 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=37.8
Q ss_pred cCCccccccccccCcEEEEEEeCCChh-hHHHHHHHHHHHHh
Q 028397 159 SRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARK 199 (209)
Q Consensus 159 e~~~~~~~~~~~~a~~illvfDit~~~-Sf~~i~~wl~~i~~ 199 (209)
++|..+.+.+++++|++++|||+++++ ||+.+.+|+..+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~ 65 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA 65 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 788899999999999999999999887 99999999987764
No 312
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.16 E-value=0.00052 Score=58.86 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--Ccccc---ee--eeeEEEEEEECCeEEEEEEEecCCCcCCc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t---~g--~~~~~~~~~~~~~~~~l~i~D~~G~e~~~ 162 (209)
-.++++|.+|||||||++.+.+.... ...+. .| .......+.+++. ..++||+|...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 57999999999999999999976543 11111 11 1111223333321 2489999987653
No 313
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.0012 Score=56.41 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=45.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----cceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~-----~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
-.|+|+.+|+.|.|||||+..+++-.|..+. |++.....+..+.-.+..++|.|.||.|-.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 3789999999999999999999999887322 233333333333346788999999999843
No 314
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0026 Score=50.17 Aligned_cols=56 Identities=30% Similarity=0.535 Sum_probs=40.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~ 156 (209)
..+||.+-|.+||||||++.++.+.--...+.--| +++..+.-+|..+-+.|.|.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEcc
Confidence 36899999999999999999987432222122223 556677778888888888887
No 315
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0026 Score=59.82 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=68.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCc----------ccc------eeeeeEEEEEEE-----CCeEEEEEEEecC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS----------LQM------AGLNLINKTLMV-----QGARIAFSIWDVG 156 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~----------~~t------~g~~~~~~~~~~-----~~~~~~l~i~D~~ 156 (209)
.....+.++|.-+.|||+|+..++....++. ..+ -|..+...-+++ +++.+-+++.||+
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4467899999999999999999986543311 111 133333222222 5788999999999
Q ss_pred CCcCCccccccccccCcEEEEEEeCCChhhHHH
Q 028397 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189 (209)
Q Consensus 157 G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~ 189 (209)
|+-.|..-....++.+|++++++|+..--+++.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt 238 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT 238 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH
Confidence 999998888888999999999999987766543
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.09 E-value=0.0028 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
..-.++++|+.|+||||+++.+.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 34589999999999999999999765
No 317
>PRK13796 GTPase YqeH; Provisional
Probab=97.04 E-value=0.0013 Score=58.29 Aligned_cols=56 Identities=13% Similarity=0.278 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-C----cccceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-R----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~----~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
.++.++|.++||||||++++...... . ..+.-|.+.....+.+++. ..++||+|-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999999854311 1 1111122222234444432 3689999973
No 318
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.01 E-value=0.0017 Score=57.42 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC------C-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~------~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
.++.++|.++||||||++++..... . ...| |.+.....+.+++ .+.++||+|-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999997432 1 2222 2122222334422 246999999653
No 319
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.00 E-value=0.0013 Score=52.08 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEec
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~ 155 (209)
||++-|++|+|||||+++++..--....+.-| |++..+.-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999988432112233344 33444445566666666665
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0041 Score=54.90 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=57.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEE----------C----CeEEEEEEEecCCCc---
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMV----------Q----GARIAFSIWDVGGDS--- 159 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~----------~----~~~~~l~i~D~~G~e--- 159 (209)
.+++-++|-++||||||.+.+...... .++| |+..+.....+.. . -....+++.|++|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999988765 6666 3333322211111 1 124678999998743
Q ss_pred -CCccccccc---cccCcEEEEEEeCC
Q 028397 160 -RSFDHVPIA---CKDAVAILFMFDLT 182 (209)
Q Consensus 160 -~~~~~~~~~---~~~a~~illvfDit 182 (209)
+=+.+-..| ++.+|+++-|.|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 334455555 57899999999886
No 321
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.92 E-value=0.0067 Score=53.06 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-ce-eeeeEEEEEEECCeEEEEEEEecCCCcC----Ccccccccc---cc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MA-GLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KD 171 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~-t~-g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~~~~~---~~ 171 (209)
-|-+||-+++|||||++.+..-+-. ..+| |+ -.+.. .+.+ ...-.+.+=|.+|.-+ -..+-..|+ ..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG--vV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG--VVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc--EEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 3458999999999999999876655 4444 33 22222 2233 2233577888887432 222333343 46
Q ss_pred CcEEEEEEeCCChh---hHHHHHHHHHHHHhhC
Q 028397 172 AVAILFMFDLTSRC---TLNSIVGWYSEARKWN 201 (209)
Q Consensus 172 a~~illvfDit~~~---Sf~~i~~wl~~i~~~~ 201 (209)
+.+++.|.|++..+ -.++.+....|+..|+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~ 270 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS 270 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhh
Confidence 78999999998765 3777777777877774
No 322
>PRK00098 GTPase RsgA; Reviewed
Probab=96.91 E-value=0.0012 Score=56.99 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
...++++|.+|||||||++.+.+..-
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 34689999999999999999986543
No 323
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.88 E-value=0.005 Score=53.80 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=59.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC---------------CeEEEEEEEecCCCcC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------------GARIAFSIWDVGGDSR 160 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~---------------~~~~~l~i~D~~G~e~ 160 (209)
+..++|+-+||-++||||||.+.+.+.... .+.|...+|-..-.+.+. .....|+++|++|.-+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 346799999999999999999999988777 666633333332333331 2457899999997532
Q ss_pred ----Cccccccc---cccCcEEEEEEeCCC
Q 028397 161 ----SFDHVPIA---CKDAVAILFMFDLTS 183 (209)
Q Consensus 161 ----~~~~~~~~---~~~a~~illvfDit~ 183 (209)
-..+-..| ++.+|+++=|.++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23344444 467899888876643
No 324
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0046 Score=56.69 Aligned_cols=91 Identities=10% Similarity=0.046 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~-t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.=|.++|----|||||+-.+.......... -+.-.+...++..+ +..-.+.|.||+|++.|..|+..=..=+|+++||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 347899999999999999998776652111 11112222344443 1345789999999999999988777778999999
Q ss_pred EeCCC---hhhHHHHH
Q 028397 179 FDLTS---RCTLNSIV 191 (209)
Q Consensus 179 fDit~---~~Sf~~i~ 191 (209)
.|++| ++|.+.+.
T Consensus 86 Va~dDGv~pQTiEAI~ 101 (509)
T COG0532 86 VAADDGVMPQTIEAIN 101 (509)
T ss_pred EEccCCcchhHHHHHH
Confidence 99987 66666554
No 325
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.0044 Score=54.84 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC----cccceeeeeEEEEEE------ECCe------------------------
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLM------VQGA------------------------ 146 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~----~~~t~g~~~~~~~~~------~~~~------------------------ 146 (209)
-=|+++|.-+.||||||+.+.+++|+. ..||+. ++..... ++|.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 348899999999999999999999872 222221 1111111 1111
Q ss_pred ---------EEEEEEEecCCCcC-----------CccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 147 ---------RIAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 147 ---------~~~l~i~D~~G~e~-----------~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
--+++|.||+|.-. |....+=|...+|.|+++||.-..+--++.+..+..++.+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 11688999998421 2233444567899999999877665555556666666544
No 326
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.80 E-value=0.0053 Score=43.93 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=51.9
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 103 ISLLG-DCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 103 IvvlG-d~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
|.+.| .+|+|||++...+..---....+..-+ ..|.. +.+.+.|+++.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~-------d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLI-------DLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE-------eCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 45666 679999998877653211111122222 22222 77889999876432 233566789999999874
Q ss_pred CChhhHHHHHHHHH
Q 028397 182 TSRCTLNSIVGWYS 195 (209)
Q Consensus 182 t~~~Sf~~i~~wl~ 195 (209)
+..+++.+..+++
T Consensus 72 -~~~s~~~~~~~~~ 84 (104)
T cd02042 72 -SPLDLDGLEKLLE 84 (104)
T ss_pred -CHHHHHHHHHHHH
Confidence 5668888887776
No 327
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.79 E-value=0.00076 Score=50.92 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLI 137 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~ 137 (209)
|+.++|..|+|||+|.+.+.++..- +..|..+++.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~ 37 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFN 37 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hcccceeecc
Confidence 7899999999999999999865432 3334444443
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.56 E-value=0.013 Score=46.85 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=51.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEe--cC-CCcCCccccccccccCcEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD--VG-GDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D--~~-G~e~~~~~~~~~~~~a~~il 176 (209)
.-.+.++|+.|+|||||++-+.+-.. ++.| .+.+++..+.+..-+ .+ |+.+--.+......+.+.++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34788999999999999998876432 2223 122333332221111 22 33233345555666676665
Q ss_pred EE--EeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FM--FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lv--fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+= ++--|..+-+.+.+|+.++.+.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHc
Confidence 52 2233566667777777777543
No 329
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.52 E-value=0.0024 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
--.+++|.+|||||||+|++..+
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 36789999999999999999863
No 330
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.012 Score=54.34 Aligned_cols=96 Identities=14% Similarity=0.241 Sum_probs=65.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-----------CCCcc---cceeeeeEEEEEEE---CCeEEEEEEEecCCCcCCccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE-----------QERSL---QMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~-----------~~~~~---~t~g~~~~~~~~~~---~~~~~~l~i~D~~G~e~~~~~ 164 (209)
++.++---.=|||||..|++.-. +.+.. ..-|+++..++..+ +|+.+.|++.||+|+-.|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 34455555679999999997321 11111 12366665554433 577899999999999999888
Q ss_pred cccccccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028397 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 165 ~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i 197 (209)
....+.-++++|++.|...----+.+..++..+
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAf 174 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAF 174 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHH
Confidence 888888999999999988754444444444333
No 331
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.40 E-value=0.0097 Score=54.45 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=56.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC---C-Ccc--cce--eeeeEEE--------EE---EEC-C-----------
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ---E-RSL--QMA--GLNLINK--------TL---MVQ-G----------- 145 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~---~-~~~--~t~--g~~~~~~--------~~---~~~-~----------- 145 (209)
....+.|.++|--..|||||+..+.+-.- . +.. -|+ |+..... .. ..+ +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 34578999999999999999999985322 2 110 021 2221100 00 010 0
Q ss_pred ----eEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 146 ----ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 146 ----~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
....+.|.|++|++.|-.....-...+|++++|.|.++.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 023678999999998865544556789999999999863
No 332
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.39 E-value=0.0029 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
+|+|.|.+||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 333
>PRK08118 topology modulation protein; Reviewed
Probab=96.34 E-value=0.0032 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-||+|+|.+|+|||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998753
No 334
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.33 E-value=0.013 Score=53.34 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=67.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CC------Cccc------ceeeeeEEEEEEE-----CCeEEEEEEEecCCC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE------RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGD 158 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~--~~------~~~~------t~g~~~~~~~~~~-----~~~~~~l~i~D~~G~ 158 (209)
..+|.|+ ---.=|||||..|++... .. +... .-|+++....+.+ +|+.+.|++.||+|+
T Consensus 9 IRNFsII--AHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 9 IRNFSII--AHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred ccceEEE--EEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3344443 334579999999997421 11 1111 2255555444443 578899999999999
Q ss_pred cCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 159 e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
-.|.--....+..+.+.|++.|.+.--.-+.+...|..+.+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~ 127 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN 127 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc
Confidence 98877666777889999999999986555666666655554
No 335
>PRK07261 topology modulation protein; Provisional
Probab=96.15 E-value=0.0046 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.||+++|.+|+|||||...+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 336
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.0067 Score=54.70 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--C--------------CCC-----CcccceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG--N--------------EQE-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~--~--------------~~~-----~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
-...+|--+.+|||||..++.- + .+. +-...-|+.+.+-.+.++...+.+++.||+|++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3456788899999999998852 1 110 001123666666666777778889999999999
Q ss_pred CCccccccccccCcEEEEEEeCCC
Q 028397 160 RSFDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 160 ~~~~~~~~~~~~a~~illvfDit~ 183 (209)
.|..-+-..+..+|..++|.|...
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAK 116 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAK 116 (528)
T ss_pred ccchhHHHHHHhhheeeEEEeccc
Confidence 988766666788999999999865
No 337
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.14 E-value=0.0045 Score=46.60 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028397 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~ 121 (209)
|+++|.+|+|||||+.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999997
No 338
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.005 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.||+++|.+|+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 339
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.019 Score=55.08 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=71.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--C------------CCCccc---ceeeeeEEEEEEECCe-EEEEEEEecCCCcC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--E------------QERSLQ---MAGLNLINKTLMVQGA-RIAFSIWDVGGDSR 160 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~------------~~~~~~---t~g~~~~~~~~~~~~~-~~~l~i~D~~G~e~ 160 (209)
..-+|-++|--..|||||..+++.. . +.+..+ .-|+.+....+.+.-. .+.+++.||+|+-.
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 3567899999999999999998731 1 111111 2255555544444323 68999999999999
Q ss_pred CccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 161 ~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
|.......++-.|++++|+|...--..+.-.-|.+..+.
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~ 127 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY 127 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc
Confidence 988888888999999999999876555555566555443
No 340
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.04 E-value=0.0038 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 341
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.03 E-value=0.0091 Score=54.69 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=42.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
.+.|-+||=++|||||+||.+++.+-.....|-|-+=.-.++.+.. .+.+.||+|.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 5889999999999999999999998876556666543334555543 4678999984
No 342
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.018 Score=53.24 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEE-CCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
-=|-++|--.=|||||+..|.+.... ...- |..+--+ ++.+ +| -.+.|.||+|+..|..|+..=-.-+|+++
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF--~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAF--TVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceE--EEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 34678999999999999999887665 2111 2232223 3334 44 56789999999999999887777789999
Q ss_pred EEEeCCC---hhhHHHHH
Q 028397 177 FMFDLTS---RCTLNSIV 191 (209)
Q Consensus 177 lvfDit~---~~Sf~~i~ 191 (209)
+|....| ++|.+.|+
T Consensus 230 LVVAadDGVmpQT~EaIk 247 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLEAIK 247 (683)
T ss_pred EEEEccCCccHhHHHHHH
Confidence 9998776 67766655
No 343
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.0043 Score=55.46 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=58.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 182 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit 182 (209)
|.++|..|+|||||++-+.+-. .|..| .+.+||+.+ |-...|+|+.+....+.+.+.|==.+...
T Consensus 352 vFliG~NGsGKST~~~LLtGL~----~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLY----QPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred EEEECCCCCcHHHHHHHHhccc----CCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 6789999999999999887543 24444 345566554 34445778888777776666555555666
Q ss_pred ChhhHHHHHHHHHHHHh
Q 028397 183 SRCTLNSIVGWYSEARK 199 (209)
Q Consensus 183 ~~~Sf~~i~~wl~~i~~ 199 (209)
+..|-+.+..|++.+.-
T Consensus 417 ~~as~q~i~~~LqrLel 433 (546)
T COG4615 417 GKASPQLIEKWLQRLEL 433 (546)
T ss_pred cCCChHHHHHHHHHHHH
Confidence 77888999999998753
No 344
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.066 Score=48.78 Aligned_cols=104 Identities=14% Similarity=0.275 Sum_probs=59.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCc-----cc--cee----------------eeeEEEEEEEC------------
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERS-----LQ--MAG----------------LNLINKTLMVQ------------ 144 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~-----~~--t~g----------------~~~~~~~~~~~------------ 144 (209)
.-+|+++|+.|||||||+.-+++.--+.. .. .+| .+|..+.+.++
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 56899999999999999998875322100 00 001 01111111111
Q ss_pred --CeEEEEEEEecCCCcCCc-cccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCC
Q 028397 145 --GARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGP 204 (209)
Q Consensus 145 --~~~~~l~i~D~~G~e~~~-~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~~~ 204 (209)
..--.+.|-|..|....+ .+...++...|++|+ =..||--..++|...-+.|+.++...
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL-DEPTNNLDIESIDALaEAIney~GgV 754 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL-DEPTNNLDIESIDALAEAINEYNGGV 754 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe-cCCCCCcchhhHHHHHHHHHhccCcE
Confidence 122467888887766544 355566677777665 34455445556666666677776543
No 345
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.79 E-value=0.029 Score=42.61 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=52.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCC
Q 028397 104 SLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 104 vvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~ 183 (209)
+.-|.+|+|||++...+...--.....+.-+|.. .......+.+.+.|+++.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 4567899999998776653211111112222211 0111122778999998643 333445678999999998764
Q ss_pred hhhHHHHHHHHHHHHhh
Q 028397 184 RCTLNSIVGWYSEARKW 200 (209)
Q Consensus 184 ~~Sf~~i~~wl~~i~~~ 200 (209)
..++..+...++++.+.
T Consensus 78 ~~s~~~~~~~l~~l~~~ 94 (139)
T cd02038 78 PTSITDAYALIKKLAKQ 94 (139)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 55666666556666444
No 346
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.018 Score=48.46 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEE--EECCeEEEEEEEecCCCcCCccc---cccccccCcEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTL--MVQGARIAFSIWDVGGDSRSFDH---VPIACKDAVAI 175 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~--~~~~~~~~l~i~D~~G~e~~~~~---~~~~~~~a~~i 175 (209)
-+|+++|-..+||||+-+-...+-.+ ..|.-.+...+.. ++.+.-+.+++||.+||-.+-.- -...+++..+.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP--neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP--NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC--CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45999999999999986554433222 1233333222211 22345588999999999764321 13347889999
Q ss_pred EEEEeCCC
Q 028397 176 LFMFDLTS 183 (209)
Q Consensus 176 llvfDit~ 183 (209)
++|.|..+
T Consensus 106 ifvIDaQd 113 (347)
T KOG3887|consen 106 IFVIDAQD 113 (347)
T ss_pred EEEEechH
Confidence 99998655
No 347
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.76 E-value=0.081 Score=36.22 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=47.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc-cccccccCcEEEEEEeC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL 181 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~-~~~~~~~a~~illvfDi 181 (209)
+++.|..|+|||++...+...--. .|. +...++ .+.+.|+++.-..... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999887633111 111 122222 6788998876543321 13445678888888865
Q ss_pred CChhhHHHHHHHH
Q 028397 182 TSRCTLNSIVGWY 194 (209)
Q Consensus 182 t~~~Sf~~i~~wl 194 (209)
. ..+...+....
T Consensus 69 ~-~~~~~~~~~~~ 80 (99)
T cd01983 69 E-ALAVLGARRLT 80 (99)
T ss_pred c-hhhHHHHHHHH
Confidence 4 34455554443
No 348
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.75 E-value=0.01 Score=43.03 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE 126 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~ 126 (209)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999866554
No 349
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.75 E-value=0.025 Score=57.36 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cc----ccceeee-eEEEEEEECCeEEEEEEEecCCCc--------CCccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS----LQMAGLN-LINKTLMVQGARIAFSIWDVGGDS--------RSFDHVP 166 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~----~~t~g~~-~~~~~~~~~~~~~~l~i~D~~G~e--------~~~~~~~ 166 (209)
-=.+|||++|+||||++.+- +-+|+ .. ..+.+.. .......+.++ -.++||+|.- .....|.
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHH
Confidence 34689999999999999987 44554 21 1111110 00011122222 3478999832 1122233
Q ss_pred ccc---------ccCcEEEEEEeCCChhh-----H----HHHHHHHHHHHhhCC
Q 028397 167 IAC---------KDAVAILFMFDLTSRCT-----L----NSIVGWYSEARKWNQ 202 (209)
Q Consensus 167 ~~~---------~~a~~illvfDit~~~S-----f----~~i~~wl~~i~~~~~ 202 (209)
.++ +..||+|++.|+.+--+ . ..+...++++.+.-.
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg 241 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG 241 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 332 45799999999875421 1 245567777776633
No 350
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=95.74 E-value=0.0093 Score=54.59 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=64.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC----cccccccc-----
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPIAC----- 169 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~----~~~~~~~~----- 169 (209)
.-.++++|-++||||||++........ .+++.+.-.++.-. ++..-...++.||+|.-.- +....+..
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 356889999999999999888877666 55553322222111 2233356788899885321 11111110
Q ss_pred ccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCceEE
Q 028397 170 KDAVAILFMFDLTSRCTL--NSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf--~~i~~wl~~i~~~~~~~~~iI 208 (209)
.=-.++|++-|++..+-+ .+-...++.|+-.-.+.+.|+
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~Il 286 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTIL 286 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEE
Confidence 012578888899876654 344478888887755554443
No 351
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.74 E-value=0.009 Score=43.94 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999844
No 352
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.066 Score=49.79 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=62.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc--------------------CCCC-C---cc------cceeeeeEEEEEEECCeE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVG--------------------NEQE-R---SL------QMAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~--------------------~~~~-~---~~------~t~g~~~~~~~~~~~~~~ 147 (209)
...+.++++|.-.+|||||+-+++. +.+. . .. ..-|+....++..++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 4578999999999999999998863 1111 0 01 112555556666667777
Q ss_pred EEEEEEecCCCcCCccccccccccCcEEEEEEeCCC
Q 028397 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 148 ~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~ 183 (209)
..+.|.|++|+..|..-.-.=...||+.+||.|.+-
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 889999999988876644444568999999999763
No 353
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.65 E-value=0.016 Score=47.10 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...-|+++|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999999754
No 354
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.62 E-value=0.0098 Score=44.78 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
|+++|++|+|||+|++.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998873
No 355
>PRK06217 hypothetical protein; Validated
Probab=95.59 E-value=0.011 Score=46.93 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.||+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 356
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.56 E-value=0.0094 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.--++|.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998763
No 357
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.55 E-value=0.01 Score=43.90 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+++.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998653
No 358
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.51 E-value=0.012 Score=43.95 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.++++|..|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999988754
No 359
>PF05729 NACHT: NACHT domain
Probab=95.49 E-value=0.011 Score=45.02 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
++|.|++|+|||+++..++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998854
No 360
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.47 E-value=0.015 Score=38.91 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|.+.|.+|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998754
No 361
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.40 E-value=0.037 Score=42.23 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999865
No 362
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.40 E-value=0.015 Score=44.32 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 363
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.37 E-value=0.015 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.++++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 364
>PF13173 AAA_14: AAA domain
Probab=95.36 E-value=0.013 Score=43.77 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
-+++.|+.+||||+|+.++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 368899999999999999986544
No 365
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.34 E-value=0.014 Score=45.85 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-++++|.+|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988653
No 366
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.31 E-value=0.016 Score=42.63 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
--+++.|++|+|||+|++.+.+.-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998653
No 367
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.30 E-value=0.016 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
No 368
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.29 E-value=0.02 Score=37.80 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028397 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~ 121 (209)
-.++.|+.|+|||||+..+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38899999999999998765
No 369
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.27 E-value=0.016 Score=42.38 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|++.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.25 E-value=0.017 Score=47.70 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
=.++++|++|+|||||+..+-.-+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3689999999999999999875543
No 371
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=95.24 E-value=0.024 Score=48.22 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=33.0
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCC
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~ 183 (209)
.++++++|++||..-+.-|-+++.+..++|+|...++
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 4679999999999989999999999999999987764
No 372
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.21 E-value=0.019 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
++|.++|+.|+|||||++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999988753
No 373
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.19 E-value=0.018 Score=46.23 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=|+++|++|||||||+++++..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999864
No 374
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.08 E-value=0.02 Score=47.98 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
..++++|+|.+|+|||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3589999999999999999988754
No 375
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.042 Score=51.28 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=45.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+-+.|+|++|.||||||..++..--......+.-. ...+.|+.-.+++.++. .....+... .+-||.+|+.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP----iTvvsgK~RRiTflEcp--~Dl~~miDv-aKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP----ITVVSGKTRRITFLECP--SDLHQMIDV-AKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc----eEEeecceeEEEEEeCh--HHHHHHHhH-HHhhheeEEE
Confidence 4577889999999999999998743221222211111 11234666777888876 222222221 2446777777
Q ss_pred EeCC
Q 028397 179 FDLT 182 (209)
Q Consensus 179 fDit 182 (209)
.|-+
T Consensus 141 Idgn 144 (1077)
T COG5192 141 IDGN 144 (1077)
T ss_pred eccc
Confidence 6654
No 376
>PRK13695 putative NTPase; Provisional
Probab=95.02 E-value=0.022 Score=44.79 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
+||.+.|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999864
No 377
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=94.98 E-value=0.076 Score=48.47 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=62.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCCc-------------ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN--EQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~--~~~~~-------------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~ 166 (209)
+|.++---.=|||||+..+... .|.+. ...-|+.+-.|...++-..++++|.||+|+-.|-.-..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 5667766778999999999853 23311 01236777777777766779999999999999988777
Q ss_pred cccccCcEEEEEEeCCC
Q 028397 167 IACKDAVAILFMFDLTS 183 (209)
Q Consensus 167 ~~~~~a~~illvfDit~ 183 (209)
..+.=.|+++++.|..+
T Consensus 87 Rvl~MVDgvlLlVDA~E 103 (603)
T COG1217 87 RVLSMVDGVLLLVDASE 103 (603)
T ss_pred hhhhhcceEEEEEEccc
Confidence 77888999999999765
No 378
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.98 E-value=0.035 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.=|+.++|++|+|||||++-+.+-
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348899999999999999988743
No 379
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.96 E-value=0.02 Score=43.86 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-|.|+|..++|||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999974
No 380
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.95 E-value=0.021 Score=47.35 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-+.++|++|+|||||++-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998864
No 381
>PRK03839 putative kinase; Provisional
Probab=94.94 E-value=0.023 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
+|+++|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 382
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.94 E-value=0.049 Score=45.09 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028397 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~ 121 (209)
..++|++|+|||||+..|-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 5789999999999999884
No 383
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.93 E-value=0.1 Score=44.28 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc--ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~--~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
-|++.|..|+||||+++.++..-.... .-++. |. .++.+.+ ...+++-. .....|.......++..-=+|++-
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp--~E~~~~~-~~q~~v~~-~~~~~~~~~l~~~lR~~PD~i~vg 156 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DP--VEYQIPG-INQVQVNE-KAGLTFARGLRAILRQDPDIIMVG 156 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CC--ceecCCC-ceEEEeCC-cCCcCHHHHHHHHhccCCCEEEec
Confidence 389999999999999998875432211 11111 10 1122222 12223222 111235555555566444455677
Q ss_pred eCCChhhHHHHH
Q 028397 180 DLTSRCTLNSIV 191 (209)
Q Consensus 180 Dit~~~Sf~~i~ 191 (209)
.+.+.+++..+.
T Consensus 157 EiR~~e~a~~~~ 168 (264)
T cd01129 157 EIRDAETAEIAV 168 (264)
T ss_pred cCCCHHHHHHHH
Confidence 888888876544
No 384
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.92 E-value=0.023 Score=44.69 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028397 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~ 121 (209)
.|+++|.+|+||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999887
No 385
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.91 E-value=0.042 Score=48.56 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
+.++|++|+||||+++.+.+=+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999986554
No 386
>PRK14530 adenylate kinase; Provisional
Probab=94.89 E-value=0.026 Score=46.03 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
.+|+++|.+|+||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999886
No 387
>PRK08233 hypothetical protein; Provisional
Probab=94.89 E-value=0.028 Score=43.97 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|.+.|.+|+|||||..++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5677889999999999999974
No 388
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.88 E-value=0.091 Score=45.97 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=57.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc--ccccc------ccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--DHVPI------ACK 170 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~--~~~~~------~~~ 170 (209)
.--|.++|-.++|||||++.+..-... +..-.-..|...+...+...+ .+-+.||.|--.-- .+... ...
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence 345889999999999999999843332 211111223333334443322 35578998832211 11111 135
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028397 171 DAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 171 ~a~~illvfDit~~~Sf~~i~~wl~~i~ 198 (209)
.+|.++-|.|+++++--+....-+.-++
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~ 284 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLN 284 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHH
Confidence 7899999999999866555444444433
No 389
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.87 E-value=0.021 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
--++|.|+.|+|||+|++.+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457888999999999999998654
No 390
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.86 E-value=0.11 Score=37.66 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=54.1
Q ss_pred EcCCCCCHHHHHHHHhcCCCCC-cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 106 LGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 106 lGd~~vGKTSLi~~~~~~~~~~-~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
=+.+|+|||++...+...--.. ...+..+|.... . ...+.+.|+++... ......+..+|.++++.+ .+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~-~~~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----F-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ-QDL 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----C-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec-CCh
Confidence 3568999999887775321111 223333332211 1 12788999987543 233445678999999886 456
Q ss_pred hhHHHHHHHHHHHHhhC
Q 028397 185 CTLNSIVGWYSEARKWN 201 (209)
Q Consensus 185 ~Sf~~i~~wl~~i~~~~ 201 (209)
.++..+..+++.+++..
T Consensus 77 ~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 77 PSIRNAKRLLELLRVLD 93 (106)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 67788888888777654
No 391
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.85 E-value=0.024 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.--|+++|++|+|||||+..+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999988754
No 392
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.84 E-value=0.026 Score=41.42 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
-.++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999987
No 393
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.83 E-value=0.087 Score=45.34 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=42.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccc--cCcEEEEEE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMF 179 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~--~a~~illvf 179 (209)
.|++.|.+|+|||++++.+-...+. .+++... +.+..+...... ..+.+.++.
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~~---------------~~d~~~~----------~L~~~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGYY---------------CVDNLPP----------SLLPKLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCCe---------------EECCcCH----------HHHHHHHHHHHhcCCCCCeEEEE
Confidence 6899999999999999999532221 1122111 111112111111 134567777
Q ss_pred eCCChhhHHHHHHHHHHHHhh
Q 028397 180 DLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~ 200 (209)
|+.+.+.++....++..+++.
T Consensus 63 D~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 63 DVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred ccCchhhHHHHHHHHHHHHHc
Confidence 888776556666777777664
No 394
>PRK14532 adenylate kinase; Provisional
Probab=94.82 E-value=0.026 Score=44.77 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
+|+++|.+|+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 395
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.77 E-value=0.027 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=|.++|++|+|||||++-+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999887543
No 396
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.64 E-value=0.029 Score=44.98 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
|.+.|++|+|||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999865
No 397
>PRK02496 adk adenylate kinase; Provisional
Probab=94.63 E-value=0.033 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++++|.+|+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 398
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.61 E-value=0.028 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
+|+++|.+|+|||++...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 399
>PRK14531 adenylate kinase; Provisional
Probab=94.60 E-value=0.033 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+|+++|.+|+||||+..++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998854
No 400
>PRK13949 shikimate kinase; Provisional
Probab=94.60 E-value=0.033 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
+|+++|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998763
No 401
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.032 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.=+++.|++|||||||++.+....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999998765
No 402
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.59 E-value=0.077 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+.++|+.|+|||||++-+.+-.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998654
No 403
>PF13479 AAA_24: AAA domain
Probab=94.58 E-value=0.027 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHH
Q 028397 99 VSLKISLLGDCQIGKTSFVVKY 120 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~ 120 (209)
..+|+++.|++|+|||+|+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 3689999999999999999998
No 404
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.52 E-value=0.036 Score=44.18 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
.-.+.++|++|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999875
No 405
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.077 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+.++|++|+|||||++.+.+-.
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58899999999999999998654
No 406
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.45 E-value=0.038 Score=44.83 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 407
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.45 E-value=0.035 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+||+++|.+|+||||+...+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999864
No 408
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.42 E-value=0.044 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..-|.+.|.+|+|||||++.+.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 46688999999999999999874
No 409
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.39 E-value=0.035 Score=45.09 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
||+|+|.+|+||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 410
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.38 E-value=0.04 Score=49.16 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=41.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
...+.+-|+|-++|||||+|+++.....-.--++-|++-.-+.+.+|. .+.|.|.+|-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence 457899999999999999999999877653334445544445555553 3667787763
No 411
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=94.38 E-value=0.038 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=0.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHH
Q 028397 99 VSLKISLLGDCQIGKTSFVVKY 120 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~ 120 (209)
..+||+++|.+++|||||++++
T Consensus 57 ~~~kiLLLG~geSGKSTi~KQ~ 78 (389)
T PF00503_consen 57 REIKILLLGSGESGKSTILKQM 78 (389)
T ss_dssp EEEEEEEEESTTSSHHHHHHHH
T ss_pred ccceEEEECCCCcchhhHHHHH
No 412
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.38 E-value=0.035 Score=48.76 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
++++|++|+|||||++-+.+-+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999976443
No 413
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.38 E-value=0.035 Score=46.39 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+++.|++|+|||++++.+.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4889999999999999999754
No 414
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.37 E-value=0.03 Score=43.30 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|+++|.+|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999987643
No 415
>PRK10646 ADP-binding protein; Provisional
Probab=94.36 E-value=0.13 Score=40.09 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-|++-||=|+|||+|++-++..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999754
No 416
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.32 E-value=0.041 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|+++|++||||+|++..++..
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 799999999999999999877
No 417
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.31 E-value=0.043 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 418
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.28 E-value=0.044 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
....|.+.|.+|+|||||++.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 419
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.27 E-value=0.039 Score=43.42 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
|+++|.+|+||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998864
No 420
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.27 E-value=0.13 Score=41.59 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|++.|+.|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987643
No 421
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.24 E-value=0.04 Score=43.91 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-+.++|.+|+|||||+.+++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 3578999999999999999873
No 422
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.24 E-value=0.039 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998865
No 423
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.23 E-value=0.045 Score=46.11 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.=|++++|++|+|||+|++.+.+.-
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4589999999999999999987653
No 424
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.22 E-value=0.046 Score=44.02 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 425
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.20 E-value=0.046 Score=45.13 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988754
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.20 E-value=0.041 Score=43.62 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
++++|++|+||++|.++++.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 427
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.19 E-value=0.048 Score=43.79 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 428
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.18 E-value=0.073 Score=50.86 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=++.++|++|+|||||++-+.+-
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998854
No 429
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.16 E-value=0.049 Score=43.98 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 430
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.12 E-value=0.045 Score=46.37 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
+.++|+.|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67899999999999999975
No 431
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.10 E-value=0.051 Score=43.92 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999864
No 432
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.08 E-value=0.16 Score=41.23 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
--+.+.|++|+|||+|+..++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh
Confidence 346789999999999999997553
No 433
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.052 Score=43.83 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 434
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.08 E-value=0.044 Score=41.35 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
+++.|++|+|||+|+..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999754
No 435
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.07 E-value=0.052 Score=43.83 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 436
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.07 E-value=0.052 Score=43.30 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.-.++++|+.|+|||||++.+++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999988753
No 437
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.047 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 438
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.05 E-value=0.051 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.||+|+|.+|+||||+...+..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988863
No 439
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.05 E-value=0.053 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999988754
No 440
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=94.05 E-value=0.25 Score=42.14 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Cc---cccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SF---DHVPIACK 170 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~---~~~~~~~~ 170 (209)
.-||-++|-++|||||++..+.+-.-+ .|.-|+-..+ .-.+.++ .-++++.|.+|.-+ -+ ...-...+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~v-pG~~~y~--gaKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTV-PGVIRYK--GAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEe-cceEecc--ccceeeecCcchhcccccCCCCccEEEEEee
Confidence 458999999999999999998855433 2211211111 0111222 35788999887432 11 12223357
Q ss_pred cCcEEEEEEeCCChhhHHHHH
Q 028397 171 DAVAILFMFDLTSRCTLNSIV 191 (209)
Q Consensus 171 ~a~~illvfDit~~~Sf~~i~ 191 (209)
.++.+++|.|+-.+-+...+-
T Consensus 136 tcnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred cccEEEEEeeccCcccHHHHH
Confidence 889999999999988876653
No 441
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.04 E-value=0.046 Score=43.11 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
|++.|..|+||||+++++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999863
No 442
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.054 Score=43.86 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998754
No 443
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.03 E-value=0.05 Score=43.29 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988754
No 444
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.02 E-value=0.052 Score=44.12 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988754
No 445
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.048 Score=44.69 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++++|++|+|||||++-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 488999999999999998764
No 446
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.054 Score=44.59 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 447
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.055 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
No 448
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.97 E-value=0.066 Score=40.27 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-|++-||=|+|||+|++.++..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998753
No 449
>PHA00729 NTP-binding motif containing protein
Probab=93.97 E-value=0.052 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
..|++.|.+|+|||+|...+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998753
No 450
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.056 Score=44.02 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998864
No 451
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.94 E-value=0.054 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+|+++|..|+||||+...+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999874
No 452
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.93 E-value=0.047 Score=39.63 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|.+-|++|+|||+|++.++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998744
No 453
>PRK14528 adenylate kinase; Provisional
Probab=93.93 E-value=0.058 Score=43.12 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
-+|+++|++|+||||+.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 454
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.057 Score=44.42 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 455
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.91 E-value=0.12 Score=45.12 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
++.++|..|+|||||++.+.+..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999998553
No 456
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.90 E-value=0.058 Score=44.22 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999865
No 457
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.90 E-value=0.059 Score=43.84 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998653
No 458
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.87 E-value=0.055 Score=41.17 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
+++.|.+|+||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 678999999999999988754
No 459
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.87 E-value=0.058 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999865
No 460
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.87 E-value=0.058 Score=44.11 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368899999999999999988654
No 461
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.87 E-value=0.059 Score=43.71 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999864
No 462
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.87 E-value=0.061 Score=43.23 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+-.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999887653
No 463
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.86 E-value=0.085 Score=49.29 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.=|+.++|++|+|||||++-+.+-
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347899999999999999998754
No 464
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.054 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+.++|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998643
No 465
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.85 E-value=0.057 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 36889999999999999998754
No 466
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.84 E-value=0.054 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-+|+++|.+|+|||||++.+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999875
No 467
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.83 E-value=0.056 Score=43.82 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...|.++|..|+|||||++++...
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999998753
No 468
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.82 E-value=0.062 Score=43.42 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+.++|+.|+|||||++-+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 469
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.81 E-value=0.057 Score=43.89 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999865
No 470
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=93.80 E-value=0.087 Score=45.67 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=36.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccccce----eeeeEEEE-EEECCeEEEEEEEecCCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA----GLNLINKT-LMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~----g~~~~~~~-~~~~~~~~~l~i~D~~G~ 158 (209)
..+.+.|+|-++||||||++........ ....++ |+...... +.+.... .+.+.||+|-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 4789999999999999999988754433 211222 32222222 3333222 3678899885
No 471
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.065 Score=42.28 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-.+.++|+.|+|||||++.+.+-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999854
No 472
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.78 E-value=0.064 Score=42.92 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+.++|+.|+|||||++-+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998753
No 473
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.78 E-value=0.057 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
..+|+|+|.+|+|||||++.+...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 569999999999999999998753
No 474
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.063 Score=44.08 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++.+.+-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999855
No 475
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.77 E-value=0.13 Score=46.11 Aligned_cols=99 Identities=11% Similarity=0.143 Sum_probs=52.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccccceee---eeE---------------EE--EEEE----------CCeEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL---NLI---------------NK--TLMV----------QGARI 148 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~---~~~---------------~~--~~~~----------~~~~~ 148 (209)
.-.|+++|+.||||||-+-.+.-.-.. .....+++ |.+ .. .+.. .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 567899999999999977765432221 11112211 110 00 1111 12356
Q ss_pred EEEEEecCCCcCCcccc----cccccc--CcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 149 AFSIWDVGGDSRSFDHV----PIACKD--AVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 149 ~l~i~D~~G~e~~~~~~----~~~~~~--a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.+.+.||+|...+.... ..|+.. ..-+.||.+.|.. .+.++..++.....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~ 338 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF 338 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC
Confidence 89999999988765422 222221 2334456676654 34555666555444
No 476
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.76 E-value=0.068 Score=41.68 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=49.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeE-------------EEEEEEecCCCc-CCccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR-------------IAFSIWDVGGDS-RSFDHVP 166 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~-------------~~l~i~D~~G~e-~~~~~~~ 166 (209)
=.+.++|+.|+|||||++-+.+...+ +.|. +.+++.. +-+ +.+.+|.+ +--.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~------v~~~g~~~~~~~~~~~~~~~i~~-~~qLS~G~~qrl~lar 95 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP----DSGE------ILVDGKEVSFASPRDARRAGIAM-VYQLSVGERQMVEIAR 95 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CCeE------EEECCEECCcCCHHHHHhcCeEE-EEecCHHHHHHHHHHH
Confidence 36889999999999999988765332 2221 1111111 111 12233222 2223445
Q ss_pred cccccCcEEEE--EEeCCChhhHHHHHHHHHHHHh
Q 028397 167 IACKDAVAILF--MFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 167 ~~~~~a~~ill--vfDit~~~Sf~~i~~wl~~i~~ 199 (209)
..+.+.+.+++ -++--|.++-+.+..++.++.+
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ 130 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRA 130 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 55667776666 3344466676777777776643
No 477
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.75 E-value=0.061 Score=43.55 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999988764
No 478
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.74 E-value=0.06 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-.+.++|+.|+|||||++-+.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999865
No 479
>PRK10908 cell division protein FtsE; Provisional
Probab=93.73 E-value=0.066 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999854
No 480
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.73 E-value=0.18 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
..-|+++|..||||||++..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999998885
No 481
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.73 E-value=0.2 Score=40.93 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
--+.+.|++|+|||+|+.+++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999743
No 482
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.72 E-value=0.064 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=.+.++|+.|+|||||++.+.+-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998653
No 483
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.72 E-value=0.068 Score=42.84 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999988653
No 484
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.71 E-value=0.069 Score=42.22 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998764
No 485
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.13 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+.++|++|+|||||++.+.+-
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999864
No 486
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.66 E-value=0.056 Score=44.55 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
|.+.|.+|+|||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 56899999999999988863
No 487
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=93.66 E-value=0.17 Score=39.35 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=|++-||=|+|||||.+-+..+
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHH
Confidence 4788899999999999988754
No 488
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.64 E-value=0.065 Score=40.99 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEE-EecC-CCcCCccccccccccCcEEEEE
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSI-WDVG-GDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i-~D~~-G~e~~~~~~~~~~~~a~~illv 178 (209)
-.+.++|+.|+|||||++-+.+... ++.| .+.+++.. .+.+ ...+ |+.+--.+......+.+.+++=
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G------~i~~~~~~-~i~~~~~lS~G~~~rv~laral~~~p~illlD 95 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE----PDEG------IVTWGSTV-KIGYFEQLSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC----CCce------EEEECCeE-EEEEEccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3568999999999999999876532 2233 22333321 1111 1123 3322233555566677665551
Q ss_pred --EeCCChhhHHHHHHHHHHH
Q 028397 179 --FDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 179 --fDit~~~Sf~~i~~wl~~i 197 (209)
+.--|..+-+.+.+++.++
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc
Confidence 1223445555555555443
No 489
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.64 E-value=0.067 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999865
No 490
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.64 E-value=0.098 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=|+.++|.+|+|||||++-+.+-
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999988754
No 491
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.64 E-value=0.061 Score=42.31 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-|++.|.+|+||||+.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999998754
No 492
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.62 E-value=0.064 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+-.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999988653
No 493
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.065 Score=43.44 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++.+.+-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998765
No 494
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.07 Score=44.08 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999865
No 495
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.59 E-value=0.069 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 496
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.59 E-value=0.069 Score=43.73 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.=.+.++|+.|+|||||++-+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999988754
No 497
>PRK06762 hypothetical protein; Provisional
Probab=93.59 E-value=0.065 Score=41.57 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.-|++.|.+|+||||+...+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988643
No 498
>PRK06547 hypothetical protein; Provisional
Probab=93.58 E-value=0.078 Score=42.05 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
....|++.|.+|+|||||...+..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356788889999999999999864
No 499
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.072 Score=44.02 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998653
No 500
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.56 E-value=0.071 Score=41.55 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
+.++|..|+|||||+.++..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998875
Done!