Query 028397
Match_columns 209
No_of_seqs 253 out of 1504
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.1E-29 7.3E-34 205.9 12.1 114 95-208 8-122 (216)
2 3q3j_B RHO-related GTP-binding 99.9 1.2E-23 3.9E-28 170.3 14.2 114 95-209 22-137 (214)
3 2a5j_A RAS-related protein RAB 99.9 1.9E-23 6.4E-28 165.2 14.8 109 98-206 19-128 (191)
4 3c5c_A RAS-like protein 12; GD 99.9 3E-23 1E-27 164.0 14.6 109 98-208 19-132 (187)
5 2ew1_A RAS-related protein RAB 99.9 2.9E-23 9.9E-28 166.8 14.7 110 98-207 24-134 (201)
6 2hup_A RAS-related protein RAB 99.9 1.2E-23 4.2E-28 168.2 12.5 111 98-208 27-139 (201)
7 2gf9_A RAS-related protein RAB 99.9 8.9E-23 3E-27 160.9 17.0 104 99-202 21-125 (189)
8 1gwn_A RHO-related GTP-binding 99.9 5.1E-23 1.7E-27 165.7 14.3 111 98-209 26-138 (205)
9 2fu5_C RAS-related protein RAB 99.9 3.6E-23 1.2E-27 161.7 12.8 108 99-206 7-115 (183)
10 1ek0_A Protein (GTP-binding pr 99.9 1E-22 3.6E-27 156.2 15.2 108 99-206 2-110 (170)
11 3tw8_B RAS-related protein RAB 99.9 1.3E-22 4.6E-27 157.3 15.9 112 98-209 7-119 (181)
12 3reg_A RHO-like small GTPase; 99.9 1E-22 3.5E-27 161.2 15.5 113 96-209 19-133 (194)
13 1r2q_A RAS-related protein RAB 99.9 1E-22 3.6E-27 156.2 15.0 111 97-207 3-114 (170)
14 2q3h_A RAS homolog gene family 99.9 9.4E-23 3.2E-27 162.0 15.1 112 97-209 17-130 (201)
15 2hxs_A RAB-26, RAS-related pro 99.9 2.9E-23 9.8E-28 161.2 11.6 103 98-200 4-108 (178)
16 1m7b_A RND3/RHOE small GTP-bin 99.9 1E-22 3.5E-27 160.1 14.5 111 98-209 5-117 (184)
17 2y8e_A RAB-protein 6, GH09086P 99.9 7.9E-23 2.7E-27 158.3 13.7 109 95-203 9-118 (179)
18 3ihw_A Centg3; RAS, centaurin, 99.9 6.3E-23 2.2E-27 162.1 13.3 98 97-201 17-115 (184)
19 1z08_A RAS-related protein RAB 99.9 7.5E-23 2.6E-27 157.4 13.4 104 98-201 4-108 (170)
20 2j0v_A RAC-like GTP-binding pr 99.9 1.4E-22 4.8E-27 162.4 14.9 111 98-209 7-119 (212)
21 2il1_A RAB12; G-protein, GDP, 99.9 6.2E-23 2.1E-27 162.7 12.4 110 98-207 24-134 (192)
22 2efe_B Small GTP-binding prote 99.9 2.1E-22 7.3E-27 156.6 15.2 110 97-206 9-119 (181)
23 2oil_A CATX-8, RAS-related pro 99.9 1.9E-22 6.4E-27 159.3 15.1 109 98-206 23-132 (193)
24 2atx_A Small GTP binding prote 99.9 1.8E-22 6E-27 159.6 14.9 111 98-209 16-128 (194)
25 1z06_A RAS-related protein RAB 99.9 9.3E-23 3.2E-27 160.7 13.1 110 99-208 19-132 (189)
26 2g6b_A RAS-related protein RAB 99.9 2.7E-22 9.1E-27 155.9 15.5 109 98-206 8-118 (180)
27 1z0j_A RAB-22, RAS-related pro 99.9 3.1E-22 1.1E-26 153.7 15.7 111 98-208 4-115 (170)
28 2bcg_Y Protein YP2, GTP-bindin 99.9 2.6E-22 8.7E-27 160.3 15.7 108 99-206 7-115 (206)
29 1z2a_A RAS-related protein RAB 99.9 1.2E-22 4.3E-27 155.7 13.3 110 99-208 4-114 (168)
30 2bme_A RAB4A, RAS-related prot 99.9 2.3E-22 8E-27 157.2 14.8 110 98-207 8-118 (186)
31 1z0f_A RAB14, member RAS oncog 99.9 1.8E-22 6.2E-27 156.3 14.0 109 98-206 13-122 (179)
32 3tkl_A RAS-related protein RAB 99.9 3E-22 1E-26 157.9 15.1 110 98-207 14-124 (196)
33 3t5g_A GTP-binding protein RHE 99.9 4.8E-22 1.7E-26 155.0 16.2 102 98-200 4-106 (181)
34 3cpj_B GTP-binding protein YPT 99.9 2.7E-22 9.1E-27 162.7 15.1 109 98-206 11-120 (223)
35 2p5s_A RAS and EF-hand domain 99.9 8.5E-23 2.9E-27 162.6 11.8 105 98-202 26-131 (199)
36 3kkq_A RAS-related protein M-R 99.9 2.5E-22 8.6E-27 156.9 14.2 103 97-200 15-118 (183)
37 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.7E-22 9.2E-27 155.5 14.0 105 97-201 4-109 (177)
38 1x3s_A RAS-related protein RAB 99.9 2.4E-22 8.2E-27 158.1 13.8 105 97-201 12-117 (195)
39 3cbq_A GTP-binding protein REM 99.9 7.8E-23 2.7E-27 163.1 11.0 111 98-208 21-135 (195)
40 2iwr_A Centaurin gamma 1; ANK 99.9 2.4E-22 8.2E-27 156.3 13.3 97 98-200 5-101 (178)
41 3gj0_A GTP-binding nuclear pro 99.9 9.2E-23 3.1E-27 164.9 11.0 115 95-209 10-125 (221)
42 3dz8_A RAS-related protein RAB 99.9 1.1E-23 3.9E-28 166.5 5.5 110 98-207 21-131 (191)
43 1g16_A RAS-related protein SEC 99.9 1.9E-22 6.5E-27 154.9 12.2 107 100-206 3-110 (170)
44 1mh1_A RAC1; GTP-binding, GTPa 99.9 6.7E-22 2.3E-26 154.2 15.5 111 98-209 3-115 (186)
45 1zbd_A Rabphilin-3A; G protein 99.9 6.5E-22 2.2E-26 157.4 15.5 110 99-208 7-118 (203)
46 4gzl_A RAS-related C3 botulinu 99.9 4.2E-22 1.4E-26 159.6 14.5 113 96-209 26-140 (204)
47 2fg5_A RAB-22B, RAS-related pr 99.9 4.1E-22 1.4E-26 157.7 14.3 110 98-207 21-131 (192)
48 2gco_A H9, RHO-related GTP-bin 99.9 7.5E-22 2.6E-26 157.5 15.7 111 98-209 23-135 (201)
49 3oes_A GTPase rhebl1; small GT 99.9 4E-22 1.4E-26 158.9 13.9 102 98-200 22-124 (201)
50 2o52_A RAS-related protein RAB 99.9 2.1E-22 7.2E-27 160.8 12.1 109 98-206 23-132 (200)
51 3l0i_B RAS-related protein RAB 99.9 4.4E-23 1.5E-27 164.2 8.1 110 98-207 31-141 (199)
52 2j1l_A RHO-related GTP-binding 99.9 3.8E-22 1.3E-26 161.0 13.2 112 97-209 31-144 (214)
53 2fn4_A P23, RAS-related protei 99.9 9.6E-22 3.3E-26 152.4 15.0 102 98-200 7-109 (181)
54 2fv8_A H6, RHO-related GTP-bin 99.9 8.1E-22 2.8E-26 158.0 14.8 111 98-209 23-135 (207)
55 1c1y_A RAS-related protein RAP 99.9 6.3E-22 2.2E-26 151.6 13.4 109 99-208 2-113 (167)
56 2g3y_A GTP-binding protein GEM 99.9 3.2E-22 1.1E-26 162.6 12.4 112 97-208 34-150 (211)
57 2nzj_A GTP-binding protein REM 99.9 5.3E-22 1.8E-26 153.4 13.0 102 99-200 3-106 (175)
58 3q85_A GTP-binding protein REM 99.9 5.8E-22 2E-26 152.5 12.8 109 100-208 2-114 (169)
59 2a9k_A RAS-related protein RAL 99.9 7.2E-22 2.5E-26 153.9 13.2 111 97-208 15-128 (187)
60 1ky3_A GTP-binding protein YPT 99.9 4.6E-22 1.6E-26 154.4 11.5 104 98-201 6-111 (182)
61 1vg8_A RAS-related protein RAB 99.9 8.9E-22 3E-26 156.6 13.4 104 98-201 6-110 (207)
62 3bc1_A RAS-related protein RAB 99.9 1.3E-21 4.6E-26 153.1 13.9 111 98-208 9-132 (195)
63 3cph_A RAS-related protein SEC 99.9 1.2E-21 4.2E-26 156.5 13.9 108 99-206 19-127 (213)
64 3clv_A RAB5 protein, putative; 99.9 1.4E-21 4.8E-26 153.7 13.8 104 99-202 6-147 (208)
65 3bwd_D RAC-like GTP-binding pr 99.9 3.4E-22 1.2E-26 155.6 9.9 111 98-209 6-118 (182)
66 2bov_A RAla, RAS-related prote 99.9 1.7E-21 5.8E-26 154.7 14.1 111 97-208 11-124 (206)
67 2cjw_A GTP-binding protein GEM 99.9 1.9E-21 6.4E-26 154.7 14.1 110 99-208 5-119 (192)
68 2yc2_C IFT27, small RAB-relate 99.9 2.3E-22 7.9E-27 159.7 8.8 105 98-202 18-127 (208)
69 3q72_A GTP-binding protein RAD 99.9 1.4E-21 4.9E-26 149.9 12.7 108 100-208 2-111 (166)
70 1kao_A RAP2A; GTP-binding prot 99.9 2.8E-21 9.5E-26 147.5 14.0 109 99-208 2-113 (167)
71 2f7s_A C25KG, RAS-related prot 99.9 3.2E-22 1.1E-26 160.9 8.9 111 98-208 23-146 (217)
72 3t1o_A Gliding protein MGLA; G 99.9 1.9E-22 6.5E-27 158.6 7.4 113 96-209 10-141 (198)
73 1u8z_A RAS-related protein RAL 99.9 2.3E-21 8E-26 148.1 12.9 109 99-208 3-114 (168)
74 2zej_A Dardarin, leucine-rich 99.9 2.3E-22 7.7E-27 158.4 7.1 110 100-209 2-118 (184)
75 3con_A GTPase NRAS; structural 99.9 5E-21 1.7E-25 150.5 14.7 110 98-208 19-131 (190)
76 4dsu_A GTPase KRAS, isoform 2B 99.9 8.4E-21 2.9E-25 148.3 14.7 102 99-201 3-105 (189)
77 2h17_A ADP-ribosylation factor 99.9 2.7E-21 9.3E-26 151.5 11.4 107 98-208 19-127 (181)
78 2h57_A ADP-ribosylation factor 99.9 5.1E-21 1.7E-25 150.9 13.0 98 99-200 20-119 (190)
79 1oix_A RAS-related protein RAB 99.9 1.3E-20 4.6E-25 149.5 15.5 104 99-202 28-132 (191)
80 1zd9_A ADP-ribosylation factor 99.9 1.8E-21 6.1E-26 153.6 10.2 99 98-200 20-119 (188)
81 2ce2_X GTPase HRAS; signaling 99.9 1.1E-20 3.6E-25 143.9 13.4 109 99-208 2-113 (166)
82 2atv_A RERG, RAS-like estrogen 99.9 6.8E-21 2.3E-25 151.0 12.8 109 98-208 26-137 (196)
83 1f6b_A SAR1; gtpases, N-termin 99.8 6.3E-21 2.1E-25 152.2 12.4 99 98-200 23-121 (198)
84 2erx_A GTP-binding protein DI- 99.8 7.6E-21 2.6E-25 146.0 12.3 102 99-201 2-104 (172)
85 4bas_A ADP-ribosylation factor 99.8 4.2E-21 1.4E-25 151.6 11.1 100 97-200 14-115 (199)
86 1m2o_B GTP-binding protein SAR 99.8 1.5E-20 5.2E-25 148.9 13.9 107 98-208 21-129 (190)
87 2f9l_A RAB11B, member RAS onco 99.8 2.3E-20 8E-25 148.5 14.4 104 99-202 4-108 (199)
88 1r8s_A ADP-ribosylation factor 99.8 6.2E-21 2.1E-25 146.0 10.5 96 101-200 1-96 (164)
89 3llu_A RAS-related GTP-binding 99.8 6.2E-21 2.1E-25 151.6 10.7 111 97-209 17-135 (196)
90 4djt_A GTP-binding nuclear pro 99.8 5E-21 1.7E-25 154.0 9.9 107 97-203 8-116 (218)
91 1upt_A ARL1, ADP-ribosylation 99.8 1.6E-20 5.3E-25 144.5 12.1 98 99-200 6-103 (171)
92 1zj6_A ADP-ribosylation factor 99.8 9.5E-21 3.2E-25 148.9 11.0 106 99-208 15-122 (187)
93 2gf0_A GTP-binding protein DI- 99.8 1.3E-20 4.4E-25 148.8 11.0 103 98-201 6-109 (199)
94 1fzq_A ADP-ribosylation factor 99.8 9.7E-21 3.3E-25 148.8 9.9 98 99-200 15-112 (181)
95 2b6h_A ADP-ribosylation factor 99.8 1.9E-20 6.6E-25 148.5 11.3 99 98-200 27-125 (192)
96 1ksh_A ARF-like protein 2; sma 99.8 5.7E-20 1.9E-24 144.0 12.9 107 98-208 16-124 (186)
97 2wkq_A NPH1-1, RAS-related C3 99.8 1.5E-19 5.1E-24 153.7 15.1 109 100-209 155-265 (332)
98 2x77_A ADP-ribosylation factor 99.8 3.7E-20 1.2E-24 145.6 10.4 98 99-200 21-118 (189)
99 3th5_A RAS-related C3 botulinu 99.7 8.6E-22 2.9E-26 157.1 0.0 111 97-208 27-139 (204)
100 1moz_A ARL1, ADP-ribosylation 99.8 4.2E-20 1.4E-24 144.0 9.3 107 98-208 16-124 (183)
101 3r7w_B Gtpase2, GTP-binding pr 99.8 3.5E-20 1.2E-24 159.8 8.7 103 102-209 1-112 (331)
102 3c5h_A Glucocorticoid receptor 99.8 2.2E-20 7.7E-25 155.4 5.1 111 98-208 17-203 (255)
103 2fh5_B SR-beta, signal recogni 99.8 4.1E-19 1.4E-23 142.4 10.0 100 98-199 5-108 (214)
104 3r7w_A Gtpase1, GTP-binding pr 99.8 8.7E-19 3E-23 149.7 11.8 108 99-209 2-121 (307)
105 3lvq_E ARF-GAP with SH3 domain 99.8 1.1E-18 3.7E-23 157.6 12.0 100 97-200 319-418 (497)
106 3o47_A ADP-ribosylation factor 99.8 8.4E-19 2.9E-23 151.2 9.9 99 98-200 163-261 (329)
107 2wji_A Ferrous iron transport 99.7 3.4E-17 1.2E-21 126.4 12.9 97 99-200 2-107 (165)
108 2lkc_A Translation initiation 99.7 2E-17 7E-22 127.9 11.1 91 98-190 6-100 (178)
109 2gj8_A MNME, tRNA modification 99.7 3E-17 1E-21 128.0 10.3 101 99-202 3-113 (172)
110 2wjg_A FEOB, ferrous iron tran 99.7 8.2E-17 2.8E-21 125.9 11.7 98 98-200 5-111 (188)
111 3dpu_A RAB family protein; roc 99.7 2.5E-18 8.6E-23 156.9 1.8 110 97-209 38-156 (535)
112 1nrj_B SR-beta, signal recogni 99.7 1.5E-17 5E-22 133.6 5.8 94 98-200 10-112 (218)
113 2ged_A SR-beta, signal recogni 99.7 2.5E-17 8.5E-22 129.6 6.9 93 99-200 47-148 (193)
114 2qu8_A Putative nucleolar GTP- 99.7 3.6E-16 1.2E-20 127.0 11.1 108 98-208 27-147 (228)
115 2dyk_A GTP-binding protein; GT 99.6 5.9E-16 2E-20 117.6 8.8 85 101-187 2-95 (161)
116 1svi_A GTP-binding protein YSX 99.6 4.5E-16 1.5E-20 122.3 6.8 94 99-195 22-131 (195)
117 2cxx_A Probable GTP-binding pr 99.6 1.3E-16 4.5E-21 124.5 2.8 90 101-196 2-105 (190)
118 3a1s_A Iron(II) transport prot 99.6 2.3E-14 7.7E-19 119.5 13.1 98 98-200 3-109 (258)
119 3iby_A Ferrous iron transport 99.6 8.5E-15 2.9E-19 122.0 9.7 94 101-196 2-108 (256)
120 3pqc_A Probable GTP-binding pr 99.5 1.3E-14 4.4E-19 113.4 8.3 97 98-197 21-132 (195)
121 3k53_A Ferrous iron transport 99.5 4.9E-14 1.7E-18 117.7 11.7 98 99-201 2-108 (271)
122 3i8s_A Ferrous iron transport 99.5 3.2E-14 1.1E-18 119.5 10.6 97 99-197 2-111 (274)
123 3iev_A GTP-binding protein ERA 99.5 1.9E-14 6.4E-19 122.8 9.2 102 98-200 8-121 (308)
124 3b1v_A Ferrous iron uptake tra 99.5 1.7E-14 5.8E-19 121.3 8.8 94 100-199 3-105 (272)
125 1wf3_A GTP-binding protein; GT 99.5 3.2E-14 1.1E-18 121.3 10.1 106 98-208 5-122 (301)
126 3def_A T7I23.11 protein; chlor 99.5 1.7E-14 5.7E-19 120.1 7.6 100 99-201 35-146 (262)
127 3lxx_A GTPase IMAP family memb 99.5 5.7E-14 1.9E-18 114.9 9.7 87 98-186 27-127 (239)
128 3gee_A MNME, tRNA modification 99.5 3E-14 1E-18 128.5 8.7 94 99-194 232-335 (476)
129 2xtp_A GTPase IMAP family memb 99.5 2.4E-13 8.1E-18 112.4 12.2 98 98-197 20-132 (260)
130 1h65_A Chloroplast outer envel 99.5 5.5E-14 1.9E-18 117.4 8.2 102 99-201 38-149 (270)
131 4fid_A G protein alpha subunit 99.5 6.1E-14 2.1E-18 121.5 8.5 67 130-200 147-223 (340)
132 2xtz_A Guanine nucleotide-bind 99.5 1.1E-13 3.9E-18 120.4 9.9 63 146-208 181-255 (354)
133 2hjg_A GTP-binding protein ENG 99.5 2.4E-14 8.2E-19 127.6 5.3 99 99-200 174-285 (436)
134 3lxw_A GTPase IMAP family memb 99.5 1.3E-13 4.3E-18 114.1 8.9 83 99-183 20-117 (247)
135 3ohm_A Guanine nucleotide-bind 99.5 4.2E-13 1.4E-17 115.7 12.2 67 130-200 153-229 (327)
136 1mky_A Probable GTP-binding pr 99.5 1.4E-13 4.9E-18 122.6 9.4 93 101-195 2-107 (439)
137 4dhe_A Probable GTP-binding pr 99.4 3.4E-14 1.2E-18 114.0 4.2 100 99-199 28-142 (223)
138 2hjg_A GTP-binding protein ENG 99.4 6.2E-14 2.1E-18 124.9 4.4 97 100-198 3-107 (436)
139 1cip_A Protein (guanine nucleo 99.4 5.3E-13 1.8E-17 116.2 9.6 74 131-208 180-265 (353)
140 2e87_A Hypothetical protein PH 99.4 1.8E-12 6.1E-17 112.6 12.3 108 99-208 166-285 (357)
141 1lnz_A SPO0B-associated GTP-bi 99.4 2.8E-13 9.6E-18 117.5 6.8 98 101-201 159-269 (342)
142 3qq5_A Small GTP-binding prote 99.4 4.7E-13 1.6E-17 119.1 7.5 99 98-200 32-139 (423)
143 4dcu_A GTP-binding protein ENG 99.4 1.1E-13 3.9E-18 123.9 2.8 101 98-200 21-129 (456)
144 1xzp_A Probable tRNA modificat 99.4 4.3E-13 1.5E-17 121.2 5.8 90 100-191 243-343 (482)
145 2qtf_A Protein HFLX, GTP-bindi 99.4 2.5E-12 8.5E-17 112.3 10.3 99 100-201 178-289 (364)
146 3geh_A MNME, tRNA modification 99.4 5.2E-13 1.8E-17 120.1 6.1 98 99-199 223-330 (462)
147 4dcu_A GTP-binding protein ENG 99.4 7.6E-13 2.6E-17 118.5 6.9 99 98-199 193-304 (456)
148 2qag_A Septin-2, protein NEDD5 99.4 4.8E-13 1.7E-17 116.6 5.4 99 99-197 36-171 (361)
149 3t5d_A Septin-7; GTP-binding p 99.4 1.8E-12 6.3E-17 108.4 8.6 101 99-199 7-143 (274)
150 3sjy_A Translation initiation 99.3 7.7E-12 2.6E-16 110.3 12.2 110 97-206 5-133 (403)
151 3p26_A Elongation factor 1 alp 99.3 2E-12 7E-17 116.6 6.0 92 98-189 31-152 (483)
152 1jny_A EF-1-alpha, elongation 99.3 4.9E-12 1.7E-16 112.7 6.6 100 99-199 5-134 (435)
153 2c78_A Elongation factor TU-A; 99.3 5.8E-12 2E-16 111.1 6.9 102 98-200 9-126 (405)
154 1jal_A YCHF protein; nucleotid 99.2 1.2E-11 4E-16 108.0 8.2 96 100-197 2-132 (363)
155 1r5b_A Eukaryotic peptide chai 99.2 5.7E-12 2E-16 113.3 6.2 96 98-197 41-173 (467)
156 3j2k_7 ERF3, eukaryotic polype 99.2 3.6E-11 1.2E-15 107.3 11.3 85 98-184 15-131 (439)
157 1mky_A Probable GTP-binding pr 99.2 1.9E-11 6.4E-16 108.9 9.2 89 99-189 179-281 (439)
158 3izy_P Translation initiation 99.2 1.2E-12 4E-17 119.7 1.3 93 100-193 4-97 (537)
159 1g7s_A Translation initiation 99.2 8.8E-12 3E-16 115.2 6.8 95 98-192 3-117 (594)
160 1ega_A Protein (GTP-binding pr 99.2 1.5E-11 5.1E-16 104.5 7.6 95 98-198 6-112 (301)
161 1wb1_A Translation elongation 99.2 2.2E-11 7.4E-16 110.0 8.8 92 98-191 17-119 (482)
162 1zun_B Sulfate adenylate trans 99.2 2.8E-11 9.7E-16 107.7 9.2 102 98-200 22-155 (434)
163 1azs_C GS-alpha; complex (lyas 99.2 4.9E-11 1.7E-15 105.4 9.6 74 131-208 204-289 (402)
164 2aka_B Dynamin-1; fusion prote 99.2 1.8E-11 6.1E-16 102.6 6.3 102 98-199 24-190 (299)
165 1wxq_A GTP-binding protein; st 99.2 8E-11 2.8E-15 103.9 10.4 99 101-199 1-140 (397)
166 1s0u_A EIF-2-gamma, translatio 99.2 8.2E-11 2.8E-15 103.8 10.3 95 99-193 7-130 (408)
167 1d2e_A Elongation factor TU (E 99.2 2.7E-11 9.3E-16 106.6 7.2 100 99-199 2-116 (397)
168 3cb4_D GTP-binding protein LEP 99.2 2.3E-11 7.8E-16 112.5 6.8 99 100-198 4-121 (599)
169 1n0u_A EF-2, elongation factor 99.2 6.8E-11 2.3E-15 113.3 10.1 99 99-197 18-147 (842)
170 3tr5_A RF-3, peptide chain rel 99.2 1.6E-11 5.4E-16 112.1 5.5 96 99-194 12-128 (528)
171 1f60_A Elongation factor EEF1A 99.2 9.3E-12 3.2E-16 111.7 3.5 83 98-184 5-121 (458)
172 2ohf_A Protein OLA1, GTP-bindi 99.2 2.1E-11 7.1E-16 107.5 5.6 92 99-190 21-135 (396)
173 1pui_A ENGB, probable GTP-bind 99.2 1.6E-11 5.4E-16 97.5 4.4 94 99-195 25-134 (210)
174 1kk1_A EIF2gamma; initiation o 99.2 1.9E-10 6.7E-15 101.4 11.3 97 97-193 7-132 (410)
175 2ywe_A GTP-binding protein LEP 99.1 8.4E-11 2.9E-15 108.7 8.2 100 99-198 5-123 (600)
176 3izq_1 HBS1P, elongation facto 99.1 6.2E-11 2.1E-15 109.9 7.1 87 98-184 165-281 (611)
177 2elf_A Protein translation elo 99.1 6.3E-11 2.1E-15 103.6 6.6 89 102-201 23-111 (370)
178 1zo1_I IF2, translation initia 99.1 2.6E-11 8.7E-16 110.0 4.0 90 99-190 3-96 (501)
179 2h5e_A Peptide chain release f 99.1 9.8E-11 3.4E-15 106.9 7.0 88 99-186 12-120 (529)
180 1u0l_A Probable GTPase ENGC; p 99.1 2.7E-11 9.3E-16 102.9 2.3 79 115-199 32-113 (301)
181 1dar_A EF-G, elongation factor 99.1 1.7E-10 5.7E-15 108.4 7.7 94 98-195 10-124 (691)
182 2j69_A Bacterial dynamin-like 99.1 1.5E-10 5.3E-15 108.7 7.0 101 99-200 68-229 (695)
183 1zcb_A G alpha I/13; GTP-bindi 99.0 7.4E-10 2.5E-14 96.6 9.9 94 111-208 158-273 (362)
184 2qag_C Septin-7; cell cycle, c 99.0 4.1E-10 1.4E-14 100.0 8.4 103 97-199 28-166 (418)
185 3t34_A Dynamin-related protein 99.0 3.3E-10 1.1E-14 98.2 7.5 99 101-201 35-200 (360)
186 2qnr_A Septin-2, protein NEDD5 99.0 1.2E-10 4.3E-15 98.9 4.2 76 98-173 16-115 (301)
187 3avx_A Elongation factor TS, e 99.0 1.2E-10 4E-15 113.9 4.4 103 97-200 293-410 (1289)
188 2qpt_A EH domain-containing pr 99.0 1.4E-10 4.9E-15 106.2 4.2 102 99-200 64-217 (550)
189 2xex_A Elongation factor G; GT 99.0 5.2E-10 1.8E-14 105.1 7.3 98 99-199 9-125 (693)
190 2rdo_7 EF-G, elongation factor 99.0 1.2E-09 4.1E-14 102.8 9.0 97 99-195 9-129 (704)
191 2dy1_A Elongation factor G; tr 99.0 6.2E-10 2.1E-14 104.1 6.8 101 99-200 8-125 (665)
192 2dby_A GTP-binding protein; GD 98.9 1.8E-09 6.3E-14 94.3 8.6 81 101-183 2-111 (368)
193 1jwy_B Dynamin A GTPase domain 98.9 5.6E-10 1.9E-14 94.3 5.1 28 98-125 22-49 (315)
194 3mca_A HBS1, elongation factor 98.9 2E-10 7E-15 106.1 1.3 87 98-184 175-291 (592)
195 1udx_A The GTP-binding protein 98.9 4.3E-09 1.5E-13 93.4 8.3 99 101-201 158-264 (416)
196 2x2e_A Dynamin-1; nitration, h 98.8 2.4E-09 8.4E-14 92.6 4.2 29 98-126 29-57 (353)
197 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 9.5E-08 3.3E-12 84.1 7.2 85 99-183 19-127 (392)
198 4a9a_A Ribosome-interacting GT 98.5 3.5E-07 1.2E-11 80.0 8.8 84 100-185 72-163 (376)
199 2hf9_A Probable hydrogenase ni 98.3 1.3E-08 4.3E-13 81.6 -3.7 38 100-137 38-76 (226)
200 3cnl_A YLQF, putative uncharac 98.2 4.6E-07 1.6E-11 75.4 3.0 57 101-160 100-156 (262)
201 1bif_A 6-phosphofructo-2-kinas 98.2 3.1E-08 1.1E-12 88.8 -5.8 102 99-201 38-149 (469)
202 2wsm_A Hydrogenase expression/ 98.1 1.3E-06 4.6E-11 69.4 3.9 83 100-185 30-143 (221)
203 3p32_A Probable GTPase RV1496/ 98.0 1.1E-06 3.7E-11 76.0 1.1 23 100-122 79-101 (355)
204 1puj_A YLQF, conserved hypothe 98.0 5.2E-06 1.8E-10 69.7 4.8 59 99-160 119-177 (282)
205 3vqt_A RF-3, peptide chain rel 97.9 1.5E-05 5.1E-10 72.9 6.2 100 100-200 31-151 (548)
206 1yrb_A ATP(GTP)binding protein 97.8 4.8E-05 1.6E-09 61.9 7.1 24 98-121 12-35 (262)
207 3zvr_A Dynamin-1; hydrolase, D 97.8 7.3E-05 2.5E-09 70.8 9.0 29 97-125 48-76 (772)
208 2www_A Methylmalonic aciduria 97.8 2E-06 6.9E-11 74.3 -1.7 23 100-122 74-96 (349)
209 2yv5_A YJEQ protein; hydrolase 97.7 7.1E-05 2.4E-09 63.2 6.6 43 157-199 65-108 (302)
210 2p67_A LAO/AO transport system 97.5 2E-05 6.8E-10 67.7 1.3 37 147-186 148-184 (341)
211 4fn5_A EF-G 1, elongation fact 97.4 0.00039 1.3E-08 65.3 8.0 100 100-199 13-136 (709)
212 3ec1_A YQEH GTPase; atnos1, at 97.3 0.0003 1E-08 61.1 5.9 55 100-159 162-223 (369)
213 3j25_A Tetracycline resistance 97.2 5.8E-05 2E-09 70.1 0.8 94 102-195 4-114 (638)
214 2qm8_A GTPase/ATPase; G protei 97.2 0.00023 7.8E-09 61.0 3.7 22 100-121 55-76 (337)
215 3h2y_A GTPase family protein; 97.1 0.00069 2.4E-08 58.8 6.1 58 100-160 160-223 (368)
216 2qag_B Septin-6, protein NEDD5 97.1 0.0022 7.5E-08 56.8 9.2 60 100-159 42-106 (427)
217 3l82_B F-box only protein 4; T 97.0 0.00031 1.1E-08 56.8 3.0 42 155-197 109-150 (227)
218 1f5n_A Interferon-induced guan 97.0 0.00058 2E-08 63.0 4.9 61 98-160 36-103 (592)
219 3l2o_B F-box only protein 4; s 96.6 0.00076 2.6E-08 57.0 1.9 34 155-188 194-227 (312)
220 2j37_W Signal recognition part 96.4 0.0024 8.2E-08 57.7 4.4 87 100-186 101-228 (504)
221 3sop_A Neuronal-specific septi 96.4 0.0018 6.1E-08 53.8 3.1 25 100-124 2-26 (270)
222 1kgd_A CASK, peripheral plasma 96.1 0.0028 9.7E-08 48.8 2.9 22 101-122 6-27 (180)
223 1ye8_A Protein THEP1, hypothet 96.1 0.0032 1.1E-07 48.9 3.2 23 101-123 1-23 (178)
224 1lvg_A Guanylate kinase, GMP k 96.0 0.0034 1.2E-07 49.3 2.8 22 101-122 5-26 (198)
225 1ex7_A Guanylate kinase; subst 95.9 0.0046 1.6E-07 48.6 3.1 21 103-123 4-24 (186)
226 3ney_A 55 kDa erythrocyte memb 95.8 0.0058 2E-07 48.5 3.4 24 99-122 18-41 (197)
227 3q5d_A Atlastin-1; G protein, 95.8 0.0096 3.3E-07 53.0 5.1 65 97-161 64-153 (447)
228 3a00_A Guanylate kinase, GMP k 95.7 0.0054 1.8E-07 47.4 2.8 20 103-122 4-23 (186)
229 4gp7_A Metallophosphoesterase; 95.7 0.0053 1.8E-07 46.9 2.7 19 102-120 11-29 (171)
230 3tr0_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 47.3 3.0 22 102-123 9-30 (205)
231 1s96_A Guanylate kinase, GMP k 95.6 0.0062 2.1E-07 48.9 3.0 23 101-123 17-39 (219)
232 1zp6_A Hypothetical protein AT 95.6 0.0066 2.3E-07 46.6 3.0 23 101-123 10-32 (191)
233 3tau_A Guanylate kinase, GMP k 95.5 0.007 2.4E-07 47.7 3.0 23 101-123 9-31 (208)
234 1tq4_A IIGP1, interferon-induc 95.5 0.0084 2.9E-07 52.8 3.6 22 102-123 71-92 (413)
235 1znw_A Guanylate kinase, GMP k 95.5 0.0076 2.6E-07 47.3 2.9 22 102-123 22-43 (207)
236 1z6g_A Guanylate kinase; struc 95.4 0.0077 2.6E-07 48.0 2.9 22 101-122 24-45 (218)
237 2qor_A Guanylate kinase; phosp 95.4 0.0085 2.9E-07 46.9 3.0 22 101-122 13-34 (204)
238 3kb2_A SPBC2 prophage-derived 95.3 0.0097 3.3E-07 44.5 2.8 21 102-122 3-23 (173)
239 3c8u_A Fructokinase; YP_612366 95.2 0.01 3.5E-07 46.6 2.9 24 99-122 21-44 (208)
240 3lw7_A Adenylate kinase relate 95.2 0.012 4E-07 43.9 3.0 20 101-120 2-21 (179)
241 2j41_A Guanylate kinase; GMP, 95.2 0.011 3.8E-07 45.7 2.9 23 101-123 7-29 (207)
242 1htw_A HI0065; nucleotide-bind 95.1 0.012 4E-07 44.9 2.9 23 102-124 35-57 (158)
243 2cdn_A Adenylate kinase; phosp 95.1 0.015 5.3E-07 45.1 3.7 24 99-122 19-42 (201)
244 1jbk_A CLPB protein; beta barr 95.1 0.013 4.3E-07 44.1 3.0 22 102-123 45-66 (195)
245 1ly1_A Polynucleotide kinase; 95.1 0.013 4.5E-07 44.1 3.1 22 101-122 3-24 (181)
246 3fb4_A Adenylate kinase; psych 95.0 0.014 4.6E-07 45.8 3.2 22 101-122 1-22 (216)
247 2jaq_A Deoxyguanosine kinase; 95.0 0.015 5E-07 44.8 3.2 21 102-122 2-22 (205)
248 1kag_A SKI, shikimate kinase I 95.0 0.014 4.7E-07 44.0 3.0 22 101-122 5-26 (173)
249 3dl0_A Adenylate kinase; phosp 95.0 0.015 5.1E-07 45.7 3.3 22 101-122 1-22 (216)
250 1kht_A Adenylate kinase; phosp 95.0 0.015 5.1E-07 44.3 3.2 22 101-122 4-25 (192)
251 2bdt_A BH3686; alpha-beta prot 94.9 0.014 4.7E-07 44.9 2.9 21 102-122 4-24 (189)
252 2bbw_A Adenylate kinase 4, AK4 94.9 0.017 5.7E-07 46.6 3.3 21 101-121 28-48 (246)
253 1nks_A Adenylate kinase; therm 94.9 0.016 5.3E-07 44.2 3.0 21 102-122 3-23 (194)
254 3t61_A Gluconokinase; PSI-biol 94.9 0.015 5.1E-07 45.2 2.9 22 101-122 19-40 (202)
255 3ec2_A DNA replication protein 94.8 0.013 4.3E-07 44.8 2.4 22 101-122 39-60 (180)
256 2ehv_A Hypothetical protein PH 94.8 0.016 5.4E-07 46.1 3.1 20 102-121 32-51 (251)
257 4eun_A Thermoresistant glucoki 94.8 0.016 5.3E-07 45.2 3.0 23 100-122 29-51 (200)
258 4ido_A Atlastin-1; GTPase, GTP 94.8 0.044 1.5E-06 48.8 6.2 63 99-161 66-153 (457)
259 3vaa_A Shikimate kinase, SK; s 94.8 0.017 5.9E-07 44.9 3.2 22 101-122 26-47 (199)
260 2i3b_A HCR-ntpase, human cance 94.8 0.015 5.2E-07 45.5 2.9 21 102-122 3-23 (189)
261 1qhx_A CPT, protein (chloramph 94.8 0.017 5.7E-07 43.7 2.9 22 101-122 4-25 (178)
262 3tif_A Uncharacterized ABC tra 94.8 0.016 5.4E-07 46.9 3.0 22 102-123 33-54 (235)
263 2rcn_A Probable GTPase ENGC; Y 94.7 0.017 5.9E-07 49.9 3.2 24 102-125 217-240 (358)
264 1knq_A Gluconate kinase; ALFA/ 94.7 0.024 8.1E-07 42.8 3.6 22 101-122 9-30 (175)
265 4a74_A DNA repair and recombin 94.6 0.016 5.6E-07 45.4 2.7 23 101-123 26-48 (231)
266 1np6_A Molybdopterin-guanine d 94.6 0.02 6.8E-07 44.3 3.0 22 101-122 7-28 (174)
267 3cm0_A Adenylate kinase; ATP-b 94.6 0.026 9E-07 42.9 3.7 23 100-122 4-26 (186)
268 2pcj_A ABC transporter, lipopr 94.6 0.018 6.2E-07 46.1 2.8 22 102-123 32-53 (224)
269 1zcb_A G alpha I/13; GTP-bindi 94.6 0.021 7.2E-07 49.3 3.4 24 98-121 31-54 (362)
270 2plr_A DTMP kinase, probable t 94.6 0.024 8.1E-07 43.9 3.4 23 100-122 4-26 (213)
271 3asz_A Uridine kinase; cytidin 94.6 0.02 6.9E-07 44.6 3.1 23 100-122 6-28 (211)
272 1ukz_A Uridylate kinase; trans 94.6 0.03 1E-06 43.3 4.0 21 101-121 16-36 (203)
273 2vp4_A Deoxynucleoside kinase; 94.6 0.023 7.8E-07 45.4 3.4 25 99-123 19-43 (230)
274 2if2_A Dephospho-COA kinase; a 94.5 0.02 7E-07 44.4 2.9 22 101-122 2-23 (204)
275 1tev_A UMP-CMP kinase; ploop, 94.5 0.026 8.8E-07 43.0 3.5 23 100-122 3-25 (196)
276 2onk_A Molybdate/tungstate ABC 94.5 0.022 7.5E-07 46.3 3.2 22 102-123 26-47 (240)
277 3sr0_A Adenylate kinase; phosp 94.4 0.023 7.9E-07 45.1 3.1 22 101-122 1-22 (206)
278 2cbz_A Multidrug resistance-as 94.4 0.023 7.9E-07 45.9 3.2 22 102-123 33-54 (237)
279 1b0u_A Histidine permease; ABC 94.4 0.021 7.3E-07 46.9 3.0 22 102-123 34-55 (262)
280 3trf_A Shikimate kinase, SK; a 94.4 0.024 8.4E-07 43.1 3.2 22 101-122 6-27 (185)
281 3fvq_A Fe(3+) IONS import ATP- 94.4 0.052 1.8E-06 46.9 5.5 23 102-124 32-54 (359)
282 1e4v_A Adenylate kinase; trans 94.4 0.022 7.4E-07 44.8 2.9 22 101-122 1-22 (214)
283 1mv5_A LMRA, multidrug resista 94.4 0.024 8.2E-07 46.0 3.2 22 102-123 30-51 (243)
284 2ff7_A Alpha-hemolysin translo 94.4 0.024 8.1E-07 46.2 3.2 22 102-123 37-58 (247)
285 2rhm_A Putative kinase; P-loop 94.4 0.021 7.1E-07 43.6 2.7 22 101-122 6-27 (193)
286 1sgw_A Putative ABC transporte 94.4 0.023 7.9E-07 45.4 3.0 22 102-123 37-58 (214)
287 3lnc_A Guanylate kinase, GMP k 94.4 0.015 5E-07 46.4 1.8 21 101-121 28-48 (231)
288 3uie_A Adenylyl-sulfate kinase 94.4 0.023 7.8E-07 44.2 2.9 23 100-122 25-47 (200)
289 1cke_A CK, MSSA, protein (cyti 94.4 0.025 8.5E-07 44.5 3.1 22 101-122 6-27 (227)
290 2p65_A Hypothetical protein PF 94.3 0.017 5.9E-07 43.3 2.1 23 101-123 44-66 (187)
291 2yv5_A YJEQ protein; hydrolase 94.3 0.024 8E-07 47.6 3.1 23 101-124 166-188 (302)
292 2eyu_A Twitching motility prot 94.3 0.023 7.9E-07 46.7 2.9 22 101-122 26-47 (261)
293 3gfo_A Cobalt import ATP-bindi 94.3 0.024 8.1E-07 47.1 3.0 22 102-123 36-57 (275)
294 1g6h_A High-affinity branched- 94.3 0.024 8.1E-07 46.4 3.0 22 102-123 35-56 (257)
295 4g1u_C Hemin import ATP-bindin 94.2 0.026 8.8E-07 46.6 3.1 22 102-123 39-60 (266)
296 2pze_A Cystic fibrosis transme 94.2 0.028 9.6E-07 45.2 3.2 22 102-123 36-57 (229)
297 1u0l_A Probable GTPase ENGC; p 94.2 0.023 7.9E-07 47.5 2.8 25 101-125 170-194 (301)
298 3tlx_A Adenylate kinase 2; str 94.2 0.029 9.9E-07 45.3 3.3 23 100-122 29-51 (243)
299 2d2e_A SUFC protein; ABC-ATPas 94.2 0.027 9.2E-07 45.9 3.1 22 102-123 31-52 (250)
300 1ji0_A ABC transporter; ATP bi 94.2 0.026 8.8E-07 45.7 3.0 22 102-123 34-55 (240)
301 2olj_A Amino acid ABC transpor 94.2 0.026 8.9E-07 46.5 3.0 22 102-123 52-73 (263)
302 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.028 9.5E-07 43.9 3.1 21 102-122 25-45 (235)
303 2zu0_C Probable ATP-dependent 94.2 0.028 9.6E-07 46.3 3.2 22 102-123 48-69 (267)
304 2qi9_C Vitamin B12 import ATP- 94.2 0.027 9.2E-07 46.0 3.0 22 102-123 28-49 (249)
305 2pt5_A Shikimate kinase, SK; a 94.1 0.033 1.1E-06 41.6 3.3 21 102-122 2-22 (168)
306 2ghi_A Transport protein; mult 94.1 0.029 1E-06 46.0 3.2 22 102-123 48-69 (260)
307 2v54_A DTMP kinase, thymidylat 94.1 0.031 1.1E-06 43.1 3.2 24 100-123 4-27 (204)
308 2v9p_A Replication protein E1; 94.1 0.028 9.5E-07 47.5 3.1 22 101-122 127-148 (305)
309 2ixe_A Antigen peptide transpo 94.1 0.03 1E-06 46.3 3.2 22 102-123 47-68 (271)
310 3bos_A Putative DNA replicatio 94.1 0.028 9.6E-07 44.1 2.9 23 100-122 52-74 (242)
311 1jjv_A Dephospho-COA kinase; P 94.1 0.037 1.3E-06 43.0 3.5 22 101-122 3-24 (206)
312 1aky_A Adenylate kinase; ATP:A 94.1 0.031 1.1E-06 44.0 3.2 23 100-122 4-26 (220)
313 1lw7_A Transcriptional regulat 94.1 0.023 7.7E-07 48.7 2.5 23 100-122 170-192 (365)
314 2ihy_A ABC transporter, ATP-bi 94.1 0.031 1.1E-06 46.5 3.2 22 102-123 49-70 (279)
315 1vpl_A ABC transporter, ATP-bi 94.1 0.029 9.8E-07 46.0 3.0 22 102-123 43-64 (256)
316 1njg_A DNA polymerase III subu 94.0 0.029 1E-06 43.5 2.9 21 102-122 47-67 (250)
317 1via_A Shikimate kinase; struc 94.0 0.031 1.1E-06 42.3 2.9 21 102-122 6-26 (175)
318 2chg_A Replication factor C sm 94.0 0.031 1.1E-06 42.9 2.9 20 103-122 41-60 (226)
319 2nq2_C Hypothetical ABC transp 93.9 0.031 1.1E-06 45.7 3.0 22 102-123 33-54 (253)
320 2qt1_A Nicotinamide riboside k 93.9 0.046 1.6E-06 42.5 3.8 24 100-123 21-44 (207)
321 2yz2_A Putative ABC transporte 93.9 0.031 1.1E-06 46.0 3.0 22 102-123 35-56 (266)
322 1zd8_A GTP:AMP phosphotransfer 93.9 0.034 1.2E-06 44.0 3.1 22 101-122 8-29 (227)
323 1ixz_A ATP-dependent metallopr 93.9 0.032 1.1E-06 44.9 2.9 20 103-122 52-71 (254)
324 2xb4_A Adenylate kinase; ATP-b 93.9 0.039 1.3E-06 43.8 3.4 21 102-122 2-22 (223)
325 3b85_A Phosphate starvation-in 93.9 0.026 8.9E-07 44.8 2.3 22 102-123 24-45 (208)
326 2f1r_A Molybdopterin-guanine d 93.9 0.015 5.1E-07 44.9 0.8 21 102-122 4-24 (171)
327 2pjz_A Hypothetical protein ST 93.9 0.036 1.2E-06 45.7 3.2 22 102-123 32-53 (263)
328 3iij_A Coilin-interacting nucl 93.8 0.035 1.2E-06 42.2 2.9 23 100-122 11-33 (180)
329 1y63_A LMAJ004144AAA protein; 93.8 0.042 1.4E-06 42.1 3.4 24 100-123 10-33 (184)
330 1t9h_A YLOQ, probable GTPase E 93.8 0.011 3.7E-07 50.1 0.0 24 101-124 174-197 (307)
331 2cvh_A DNA repair and recombin 93.8 0.036 1.2E-06 43.1 3.1 21 102-122 22-42 (220)
332 3aez_A Pantothenate kinase; tr 93.8 0.033 1.1E-06 47.0 3.0 24 99-122 89-112 (312)
333 2z0h_A DTMP kinase, thymidylat 93.8 0.039 1.3E-06 42.2 3.1 21 102-122 2-22 (197)
334 2pbr_A DTMP kinase, thymidylat 93.8 0.04 1.4E-06 41.9 3.2 21 102-122 2-22 (195)
335 1gvn_B Zeta; postsegregational 93.7 0.033 1.1E-06 46.3 2.8 22 101-122 34-55 (287)
336 2wwf_A Thymidilate kinase, put 93.7 0.052 1.8E-06 42.1 3.8 23 100-122 10-32 (212)
337 2yvu_A Probable adenylyl-sulfa 93.7 0.054 1.9E-06 41.3 3.8 23 100-122 13-35 (186)
338 1zak_A Adenylate kinase; ATP:A 93.7 0.032 1.1E-06 44.0 2.5 22 101-122 6-27 (222)
339 1uj2_A Uridine-cytidine kinase 93.7 0.042 1.4E-06 44.4 3.3 24 99-122 21-44 (252)
340 1gtv_A TMK, thymidylate kinase 93.7 0.013 4.6E-07 45.6 0.3 21 102-122 2-22 (214)
341 1n0w_A DNA repair protein RAD5 93.7 0.04 1.4E-06 43.5 3.1 22 102-123 26-47 (243)
342 2kjq_A DNAA-related protein; s 93.6 0.026 8.8E-07 42.3 1.8 22 101-122 37-58 (149)
343 1ak2_A Adenylate kinase isoenz 93.6 0.044 1.5E-06 43.7 3.3 22 101-122 17-38 (233)
344 1nn5_A Similar to deoxythymidy 93.5 0.044 1.5E-06 42.5 3.1 23 100-122 9-31 (215)
345 1xjc_A MOBB protein homolog; s 93.5 0.047 1.6E-06 42.1 3.1 22 101-122 5-26 (169)
346 3be4_A Adenylate kinase; malar 93.5 0.041 1.4E-06 43.3 2.9 23 100-122 5-27 (217)
347 1qf9_A UMP/CMP kinase, protein 93.5 0.056 1.9E-06 40.9 3.6 22 101-122 7-28 (194)
348 2w58_A DNAI, primosome compone 93.5 0.042 1.4E-06 42.4 2.9 22 101-122 55-76 (202)
349 3umf_A Adenylate kinase; rossm 93.5 0.052 1.8E-06 43.5 3.5 24 99-122 27-51 (217)
350 2ze6_A Isopentenyl transferase 93.5 0.041 1.4E-06 44.7 2.9 21 102-122 3-23 (253)
351 3n70_A Transport activator; si 93.5 0.086 3E-06 38.8 4.5 24 101-124 25-48 (145)
352 1rj9_A FTSY, signal recognitio 93.4 0.04 1.4E-06 46.4 2.9 21 101-121 103-123 (304)
353 2c95_A Adenylate kinase 1; tra 93.4 0.044 1.5E-06 41.9 2.9 22 101-122 10-31 (196)
354 1azs_C GS-alpha; complex (lyas 93.4 0.048 1.7E-06 47.8 3.4 24 98-121 38-61 (402)
355 2bwj_A Adenylate kinase 5; pho 93.4 0.046 1.6E-06 41.9 2.9 22 101-122 13-34 (199)
356 1e6c_A Shikimate kinase; phosp 93.4 0.048 1.6E-06 40.8 3.0 21 102-122 4-24 (173)
357 2bbs_A Cystic fibrosis transme 93.4 0.043 1.5E-06 45.9 2.9 22 102-123 66-87 (290)
358 2x8a_A Nuclear valosin-contain 93.3 0.045 1.5E-06 45.1 2.9 20 103-122 47-66 (274)
359 2jeo_A Uridine-cytidine kinase 93.3 0.045 1.5E-06 44.0 2.9 23 100-122 25-47 (245)
360 1cr0_A DNA primase/helicase; R 93.3 0.04 1.4E-06 45.4 2.7 21 102-122 37-57 (296)
361 3b9q_A Chloroplast SRP recepto 93.3 0.047 1.6E-06 45.9 3.0 23 100-122 100-122 (302)
362 1iy2_A ATP-dependent metallopr 93.2 0.047 1.6E-06 44.7 2.9 21 103-123 76-96 (278)
363 2vli_A Antibiotic resistance p 93.2 0.035 1.2E-06 42.0 2.0 22 101-122 6-27 (183)
364 1odf_A YGR205W, hypothetical 3 93.2 0.067 2.3E-06 44.6 3.9 22 100-121 31-52 (290)
365 1rz3_A Hypothetical protein rb 93.2 0.046 1.6E-06 42.6 2.7 23 100-122 22-44 (201)
366 1lv7_A FTSH; alpha/beta domain 93.2 0.05 1.7E-06 43.8 3.0 21 102-122 47-67 (257)
367 1uf9_A TT1252 protein; P-loop, 93.2 0.059 2E-06 41.4 3.3 24 100-123 8-31 (203)
368 3nh6_A ATP-binding cassette SU 93.1 0.032 1.1E-06 47.1 1.8 21 102-122 82-102 (306)
369 1z47_A CYSA, putative ABC-tran 93.1 0.052 1.8E-06 46.8 3.1 23 102-124 43-65 (355)
370 2qen_A Walker-type ATPase; unk 93.1 0.05 1.7E-06 45.2 2.9 22 102-123 33-54 (350)
371 3e70_C DPA, signal recognition 93.1 0.051 1.7E-06 46.3 2.9 23 100-122 129-151 (328)
372 1in4_A RUVB, holliday junction 93.1 0.05 1.7E-06 46.0 2.9 21 102-122 53-73 (334)
373 2it1_A 362AA long hypothetical 93.0 0.054 1.9E-06 46.8 3.2 23 102-124 31-53 (362)
374 3jvv_A Twitching mobility prot 93.0 0.051 1.7E-06 46.8 2.9 21 102-122 125-145 (356)
375 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.057 1.9E-06 43.9 3.1 22 101-122 5-26 (260)
376 2yyz_A Sugar ABC transporter, 93.0 0.055 1.9E-06 46.7 3.1 22 102-123 31-52 (359)
377 2dr3_A UPF0273 protein PH0284; 93.0 0.054 1.8E-06 42.8 2.9 21 102-122 25-45 (247)
378 3kta_A Chromosome segregation 92.9 0.058 2E-06 40.9 2.9 21 102-122 28-48 (182)
379 3rlf_A Maltose/maltodextrin im 92.9 0.059 2E-06 46.9 3.2 23 102-124 31-53 (381)
380 1g29_1 MALK, maltose transport 92.9 0.058 2E-06 46.8 3.1 23 102-124 31-53 (372)
381 2pez_A Bifunctional 3'-phospho 92.9 0.072 2.4E-06 40.4 3.3 23 100-122 5-27 (179)
382 2fna_A Conserved hypothetical 92.9 0.051 1.7E-06 45.1 2.7 21 102-122 32-52 (357)
383 1v43_A Sugar-binding transport 92.8 0.06 2.1E-06 46.7 3.2 22 102-123 39-60 (372)
384 2p5t_B PEZT; postsegregational 92.8 0.06 2.1E-06 43.6 3.0 23 100-122 32-54 (253)
385 2iyv_A Shikimate kinase, SK; t 92.8 0.063 2.2E-06 40.8 2.9 21 102-122 4-24 (184)
386 2gza_A Type IV secretion syste 92.8 0.056 1.9E-06 46.4 2.9 23 101-123 176-198 (361)
387 2qby_A CDC6 homolog 1, cell di 92.8 0.054 1.9E-06 45.5 2.7 22 101-122 46-67 (386)
388 2qz4_A Paraplegin; AAA+, SPG7, 92.7 0.062 2.1E-06 43.0 2.9 21 102-122 41-61 (262)
389 4eaq_A DTMP kinase, thymidylat 92.7 0.065 2.2E-06 43.0 3.0 23 100-122 26-48 (229)
390 3h4m_A Proteasome-activating n 92.7 0.06 2.1E-06 43.8 2.8 22 102-123 53-74 (285)
391 2ewv_A Twitching motility prot 92.7 0.063 2.2E-06 46.3 3.1 22 101-122 137-158 (372)
392 3tui_C Methionine import ATP-b 92.7 0.066 2.3E-06 46.4 3.2 22 102-123 56-77 (366)
393 1sq5_A Pantothenate kinase; P- 92.6 0.058 2E-06 45.1 2.7 23 100-122 80-102 (308)
394 4e22_A Cytidylate kinase; P-lo 92.6 0.076 2.6E-06 43.0 3.3 22 100-121 27-48 (252)
395 1vht_A Dephospho-COA kinase; s 92.6 0.082 2.8E-06 41.4 3.4 23 100-122 4-26 (218)
396 1m7g_A Adenylylsulfate kinase; 92.6 0.067 2.3E-06 41.9 2.9 22 101-122 26-47 (211)
397 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.061 2.1E-06 45.7 2.8 23 101-123 172-194 (330)
398 3b9p_A CG5977-PA, isoform A; A 92.5 0.068 2.3E-06 43.8 2.9 22 101-122 55-76 (297)
399 2obl_A ESCN; ATPase, hydrolase 92.5 0.068 2.3E-06 45.8 2.9 24 101-124 72-95 (347)
400 1nlf_A Regulatory protein REPA 92.5 0.067 2.3E-06 43.8 2.8 22 101-122 31-52 (279)
401 3szr_A Interferon-induced GTP- 92.4 0.051 1.7E-06 50.0 2.2 23 102-124 47-69 (608)
402 1p5z_B DCK, deoxycytidine kina 92.3 0.055 1.9E-06 43.9 2.1 23 100-122 24-46 (263)
403 2og2_A Putative signal recogni 92.3 0.073 2.5E-06 45.9 3.0 23 100-122 157-179 (359)
404 3tqc_A Pantothenate kinase; bi 92.3 0.074 2.5E-06 45.2 2.9 22 100-121 92-113 (321)
405 1ofh_A ATP-dependent HSL prote 92.3 0.076 2.6E-06 43.4 2.9 21 102-122 52-72 (310)
406 1l8q_A Chromosomal replication 92.3 0.072 2.5E-06 44.4 2.8 22 101-122 38-59 (324)
407 1fnn_A CDC6P, cell division co 92.2 0.075 2.6E-06 44.9 2.9 22 102-123 46-67 (389)
408 3d31_A Sulfate/molybdate ABC t 92.2 0.051 1.7E-06 46.7 1.8 23 102-124 28-50 (348)
409 3syl_A Protein CBBX; photosynt 92.2 0.072 2.5E-06 43.8 2.7 21 101-121 68-88 (309)
410 3gd7_A Fusion complex of cysti 92.2 0.074 2.5E-06 46.4 2.9 21 102-122 49-69 (390)
411 1ltq_A Polynucleotide kinase; 92.1 0.087 3E-06 43.3 3.1 22 101-122 3-24 (301)
412 2yhs_A FTSY, cell division pro 92.1 0.079 2.7E-06 47.8 2.9 23 100-122 293-315 (503)
413 1zuh_A Shikimate kinase; alpha 92.0 0.095 3.3E-06 39.2 3.0 22 101-122 8-29 (168)
414 1p9r_A General secretion pathw 92.0 0.082 2.8E-06 46.5 2.9 21 102-122 169-189 (418)
415 2qmh_A HPR kinase/phosphorylas 91.9 0.099 3.4E-06 41.6 3.1 24 100-123 34-57 (205)
416 3t15_A Ribulose bisphosphate c 91.9 0.084 2.9E-06 43.8 2.8 22 101-122 37-58 (293)
417 1d2n_A N-ethylmaleimide-sensit 91.8 0.091 3.1E-06 42.6 2.9 23 100-122 64-86 (272)
418 3nwj_A ATSK2; P loop, shikimat 91.8 0.09 3.1E-06 42.9 2.8 22 101-122 49-70 (250)
419 1nij_A Hypothetical protein YJ 91.8 0.068 2.3E-06 45.0 2.1 22 102-123 6-27 (318)
420 2dpy_A FLII, flagellum-specifi 91.7 0.09 3.1E-06 46.5 2.9 24 101-124 158-181 (438)
421 2v1u_A Cell division control p 91.7 0.08 2.7E-06 44.5 2.5 22 101-122 45-66 (387)
422 2zts_A Putative uncharacterize 91.7 0.11 3.7E-06 41.1 3.1 20 102-121 32-51 (251)
423 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.081 2.8E-06 47.1 2.5 23 101-123 139-161 (460)
424 3zvl_A Bifunctional polynucleo 91.6 0.31 1.1E-05 42.5 6.3 23 100-122 258-280 (416)
425 1oxx_K GLCV, glucose, ABC tran 91.5 0.051 1.7E-06 46.8 1.1 23 102-124 33-55 (353)
426 1sxj_E Activator 1 40 kDa subu 91.5 0.083 2.8E-06 44.3 2.4 20 103-122 39-58 (354)
427 4fcw_A Chaperone protein CLPB; 91.4 0.11 3.6E-06 42.8 2.9 22 101-122 48-69 (311)
428 3cf0_A Transitional endoplasmi 91.4 0.1 3.5E-06 43.3 2.8 22 101-122 50-71 (301)
429 3h2y_A GTPase family protein; 91.4 0.042 1.4E-06 47.4 0.4 47 157-208 55-101 (368)
430 3r20_A Cytidylate kinase; stru 91.3 0.13 4.4E-06 41.7 3.2 22 100-121 9-30 (233)
431 1sxj_D Activator 1 41 kDa subu 91.3 0.11 3.7E-06 43.4 2.9 21 103-123 61-81 (353)
432 1q3t_A Cytidylate kinase; nucl 91.3 0.13 4.4E-06 41.0 3.2 25 98-122 14-38 (236)
433 2bjv_A PSP operon transcriptio 91.3 0.19 6.5E-06 40.5 4.3 23 101-123 30-52 (265)
434 2oap_1 GSPE-2, type II secreti 91.3 0.1 3.6E-06 47.0 2.9 22 102-123 262-283 (511)
435 1sxj_C Activator 1 40 kDa subu 91.2 0.11 3.8E-06 43.7 2.8 21 103-123 49-69 (340)
436 3uk6_A RUVB-like 2; hexameric 91.2 0.1 3.6E-06 43.9 2.7 22 101-122 71-92 (368)
437 2r8r_A Sensor protein; KDPD, P 91.1 0.14 4.9E-06 41.4 3.3 22 100-121 6-27 (228)
438 2f6r_A COA synthase, bifunctio 91.1 0.13 4.6E-06 42.3 3.3 22 100-121 75-96 (281)
439 2qby_B CDC6 homolog 3, cell di 91.1 0.11 3.7E-06 43.9 2.7 21 102-122 47-67 (384)
440 3co5_A Putative two-component 91.1 0.071 2.4E-06 39.2 1.4 23 101-123 28-50 (143)
441 3b60_A Lipid A export ATP-bind 91.1 0.11 3.9E-06 47.3 3.0 22 102-123 371-392 (582)
442 1f2t_A RAD50 ABC-ATPase; DNA d 91.0 0.15 5E-06 38.0 3.1 19 103-121 26-44 (149)
443 2px0_A Flagellar biosynthesis 91.0 0.12 4.1E-06 43.2 2.8 21 101-121 106-126 (296)
444 3b5x_A Lipid A export ATP-bind 90.9 0.13 4.5E-06 46.8 3.3 22 102-123 371-392 (582)
445 3pfi_A Holliday junction ATP-d 90.9 0.13 4.3E-06 43.0 2.9 21 102-122 57-77 (338)
446 1c9k_A COBU, adenosylcobinamid 90.9 0.14 5E-06 39.8 3.0 21 103-123 2-22 (180)
447 3cwq_A Para family chromosome 90.9 0.68 2.3E-05 36.1 7.0 51 147-200 67-118 (209)
448 3pxg_A Negative regulator of g 90.8 0.12 4.2E-06 45.8 2.9 22 101-122 202-223 (468)
449 3qf7_A RAD50; ABC-ATPase, ATPa 90.8 0.58 2E-05 40.1 7.1 19 103-121 26-44 (365)
450 1pzn_A RAD51, DNA repair and r 90.8 0.13 4.3E-06 44.0 2.8 23 101-123 132-154 (349)
451 1yqt_A RNAse L inhibitor; ATP- 90.7 0.15 5.1E-06 46.2 3.4 24 101-124 48-71 (538)
452 1xwi_A SKD1 protein; VPS4B, AA 90.6 0.14 4.7E-06 43.1 2.9 23 101-123 46-68 (322)
453 3eie_A Vacuolar protein sortin 90.6 0.14 4.8E-06 42.8 2.9 22 101-122 52-73 (322)
454 3a8t_A Adenylate isopentenyltr 90.5 0.16 5.5E-06 43.5 3.2 21 102-122 42-62 (339)
455 3exa_A TRNA delta(2)-isopenten 90.5 0.16 5.4E-06 43.2 3.1 22 102-123 5-26 (322)
456 3tqf_A HPR(Ser) kinase; transf 90.5 0.16 5.6E-06 39.5 3.0 23 101-123 17-39 (181)
457 1svm_A Large T antigen; AAA+ f 90.5 0.14 4.9E-06 44.4 2.9 22 101-122 170-191 (377)
458 2r62_A Cell division protease 90.5 0.068 2.3E-06 43.1 0.8 20 103-122 47-66 (268)
459 1tue_A Replication protein E1; 90.5 0.11 3.9E-06 41.5 2.1 21 102-122 60-80 (212)
460 1vma_A Cell division protein F 90.3 0.16 5.3E-06 42.8 2.9 21 101-121 105-125 (306)
461 3crm_A TRNA delta(2)-isopenten 90.3 0.16 5.4E-06 43.2 3.0 22 101-122 6-27 (323)
462 3lda_A DNA repair protein RAD5 90.3 0.15 5E-06 44.6 2.8 20 102-121 180-199 (400)
463 1um8_A ATP-dependent CLP prote 90.2 0.16 5.3E-06 43.4 2.9 22 101-122 73-94 (376)
464 1z6t_A APAF-1, apoptotic prote 90.2 0.17 5.8E-06 45.6 3.3 22 102-123 149-170 (591)
465 1hqc_A RUVB; extended AAA-ATPa 90.2 0.11 3.9E-06 42.8 1.9 22 101-122 39-60 (324)
466 3euj_A Chromosome partition pr 90.1 0.16 5.4E-06 45.6 2.9 21 102-122 31-51 (483)
467 3d3q_A TRNA delta(2)-isopenten 90.1 0.17 5.9E-06 43.3 3.1 22 101-122 8-29 (340)
468 2ocp_A DGK, deoxyguanosine kin 90.1 0.19 6.4E-06 40.1 3.1 22 101-122 3-24 (241)
469 2yl4_A ATP-binding cassette SU 90.0 0.12 4.2E-06 47.2 2.2 22 102-123 372-393 (595)
470 1iqp_A RFCS; clamp loader, ext 90.0 0.17 5.9E-06 41.5 2.9 21 103-123 49-69 (327)
471 3ake_A Cytidylate kinase; CMP 90.0 0.18 6.3E-06 38.6 2.9 21 102-122 4-24 (208)
472 2qgz_A Helicase loader, putati 89.9 0.17 5.9E-06 42.3 2.9 23 100-122 152-174 (308)
473 1tf7_A KAIC; homohexamer, hexa 89.9 0.16 5.5E-06 45.6 2.8 19 103-121 42-60 (525)
474 1jr3_A DNA polymerase III subu 89.8 0.18 6.2E-06 42.3 2.9 21 102-122 40-60 (373)
475 4f4c_A Multidrug resistance pr 89.7 0.16 5.3E-06 50.9 2.9 21 102-122 1107-1127(1321)
476 3foz_A TRNA delta(2)-isopenten 89.7 0.2 6.9E-06 42.4 3.2 21 102-122 12-32 (316)
477 3d8b_A Fidgetin-like protein 1 89.6 0.18 6.3E-06 42.9 2.9 23 100-122 117-139 (357)
478 3qf4_B Uncharacterized ABC tra 89.6 0.15 5E-06 46.8 2.4 22 102-123 383-404 (598)
479 4edh_A DTMP kinase, thymidylat 89.6 0.2 6.7E-06 39.8 2.9 22 100-121 6-27 (213)
480 1w5s_A Origin recognition comp 89.6 0.14 4.9E-06 43.5 2.2 22 102-123 52-75 (412)
481 2h92_A Cytidylate kinase; ross 89.5 0.2 6.9E-06 39.0 2.9 23 100-122 3-25 (219)
482 3ozx_A RNAse L inhibitor; ATP 89.5 0.19 6.4E-06 45.6 3.0 22 102-123 27-48 (538)
483 2r44_A Uncharacterized protein 89.5 0.12 4.1E-06 43.1 1.6 21 102-122 48-68 (331)
484 4f4c_A Multidrug resistance pr 89.5 0.29 9.9E-06 49.0 4.6 21 102-122 446-466 (1321)
485 2qp9_X Vacuolar protein sortin 89.5 0.19 6.6E-06 42.8 2.9 22 101-122 85-106 (355)
486 1sxj_B Activator 1 37 kDa subu 89.4 0.2 6.8E-06 41.1 2.9 21 103-123 45-65 (323)
487 3j16_B RLI1P; ribosome recycli 89.4 0.2 7E-06 46.1 3.2 23 101-123 104-126 (608)
488 3hws_A ATP-dependent CLP prote 89.4 0.2 6.8E-06 42.5 2.9 22 101-122 52-73 (363)
489 1sky_E F1-ATPase, F1-ATP synth 89.3 0.23 7.8E-06 44.4 3.3 23 101-123 152-174 (473)
490 2chq_A Replication factor C sm 89.3 0.2 6.9E-06 40.9 2.8 20 103-122 41-60 (319)
491 4a82_A Cystic fibrosis transme 89.3 0.13 4.5E-06 46.8 1.8 21 102-122 369-389 (578)
492 2grj_A Dephospho-COA kinase; T 89.3 0.27 9.4E-06 38.3 3.4 25 99-123 11-35 (192)
493 4dzz_A Plasmid partitioning pr 89.3 0.053 1.8E-06 41.7 -0.7 50 147-200 75-124 (206)
494 3v9p_A DTMP kinase, thymidylat 89.2 0.16 5.5E-06 40.8 2.1 23 100-122 25-47 (227)
495 2z4s_A Chromosomal replication 89.2 0.2 6.7E-06 44.1 2.8 22 101-122 131-152 (440)
496 3vfd_A Spastin; ATPase, microt 89.2 0.21 7.2E-06 42.9 2.9 22 101-122 149-170 (389)
497 3pvs_A Replication-associated 89.1 0.21 7.1E-06 44.2 2.9 22 101-122 51-72 (447)
498 3bh0_A DNAB-like replicative h 89.1 0.23 8E-06 41.6 3.1 21 102-122 70-90 (315)
499 3qf4_A ABC transporter, ATP-bi 89.1 0.16 5.6E-06 46.4 2.3 21 102-122 371-391 (587)
500 1g8p_A Magnesium-chelatase 38 88.9 0.12 4.2E-06 43.1 1.2 21 102-122 47-67 (350)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=2.1e-29 Score=205.91 Aligned_cols=114 Identities=20% Similarity=0.469 Sum_probs=94.0
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCc
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~ 173 (209)
+.+.+.|||+|||++|||||||++||+++.|. .+.+|+|.++..+.+.+++..++++||||+|+|+|..+++.||++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 34567899999999999999999999999999 88899999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 174 ~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
++++|||+++++||+++..|+.++++.....+|+|
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~pii 122 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM 122 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 99999999999999999999999988754444444
No 2
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.91 E-value=1.2e-23 Score=170.26 Aligned_cols=114 Identities=22% Similarity=0.391 Sum_probs=98.0
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCc
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~ 173 (209)
......+||+++|+++||||||+++|.++.|. .+.+|++.++ .+.+.+++..+.++||||+|+++|..++..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 34456899999999999999999999999998 7788888776 467788889999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCceEEc
Q 028397 174 AILFMFDLTSRCTLNS-IVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 174 ~illvfDit~~~Sf~~-i~~wl~~i~~~~~~~~~iIl 209 (209)
++|+|||+++++||++ +..|+.++.+..++.|++||
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 137 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999999999 68999999998776666654
No 3
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=1.9e-23 Score=165.19 Aligned_cols=109 Identities=20% Similarity=0.429 Sum_probs=96.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+++||++|++.+..++..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45899999999999999999999999998 67788899988889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
+|||++++++|+++..|+.++.+......+
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p 128 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMV 128 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999887543333
No 4
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=164.03 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=92.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|+++.|. .+.+|++.++ ...+.+++..+.++||||+|++.|..+ ..|++++|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45799999999999999999999999988 7778888776 456788999999999999999999886 67999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhC----CCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWN----QGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~----~~~~~iI 208 (209)
+|||+++++||+++..|+.++.+.. .+.|++|
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 132 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL 132 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 9999999999999999999998763 3444444
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.9e-23 Score=166.77 Aligned_cols=110 Identities=21% Similarity=0.431 Sum_probs=101.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999999998 78889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|||+++++||+++..|+.++.+.....+++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi 134 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVIT 134 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 9999999999999999999999886544443
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=168.23 Aligned_cols=111 Identities=26% Similarity=0.473 Sum_probs=93.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.|. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999998 77789999998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
+|||+++++||+++..|++++.+.... .|++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 139 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999999999999988643 44443
No 7
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.90 E-value=8.9e-23 Score=160.85 Aligned_cols=104 Identities=23% Similarity=0.520 Sum_probs=98.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|+++||||||+++|.++.+. .+.++.+.++..+.+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 4799999999999999999999999998 778899999888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
|||++++++|+.+..|+.++.+...
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~ 125 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSW 125 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988753
No 8
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=5.1e-23 Score=165.69 Aligned_cols=111 Identities=24% Similarity=0.436 Sum_probs=99.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.|. .+.+|++.++ .+.+.+++..+.++||||+|++.|..++..+++++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 35799999999999999999999999998 6778888776 466788888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++ ..|+.++++..++.|++|+
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv 138 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 138 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 99999999999999 7999999988766666553
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.90 E-value=3.6e-23 Score=161.73 Aligned_cols=108 Identities=21% Similarity=0.464 Sum_probs=76.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|+++||||||+++|.++.+. .+.++++.++..+.+.+++..+.+++||++|++.|..++..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 4799999999999999999999999988 788899999988899999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
|||+++++||+++..|+.++.+.....++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 115 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVE 115 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999887543333
No 10
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1e-22 Score=156.17 Aligned_cols=108 Identities=24% Similarity=0.474 Sum_probs=99.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4789999999999999999999999988 778899999888889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
|||+++++||+++..|+.++.+.....++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 110 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDII 110 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999887544333
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=157.30 Aligned_cols=112 Identities=18% Similarity=0.419 Sum_probs=102.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999988 78889999999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+|||++++++|+++..|+.++.+..++.|++||
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv 119 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILV 119 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999999999999999988776666553
No 12
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.90 E-value=1e-22 Score=161.16 Aligned_cols=113 Identities=19% Similarity=0.404 Sum_probs=100.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 96 ~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
.....+||+++|++|||||||+++|.++.+. .+.+|++.++. ..+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456899999999999999999999999998 77788887765 567889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 175 ILFMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 175 illvfDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
+++|||+++++||+++ ..|+..+.+..++.|++|+
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv 133 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 133 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999999998 7899999988776666553
No 13
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=1e-22 Score=156.17 Aligned_cols=111 Identities=22% Similarity=0.490 Sum_probs=100.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
+...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 346899999999999999999999999988 6778889998888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
++|||+++++||+++..|+.++.+......++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i 114 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVI 114 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 99999999999999999999998875444443
No 14
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=9.4e-23 Score=162.01 Aligned_cols=112 Identities=22% Similarity=0.370 Sum_probs=92.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|++|||||||+++|.++.|. .+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 345799999999999999999999999988 6777877554 56778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 176 llvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
++|||+++++||+++. .|++++....++.|++|+
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv 130 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILV 130 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999999997 799999988766666553
No 15
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.90 E-value=2.9e-23 Score=161.16 Aligned_cols=103 Identities=25% Similarity=0.491 Sum_probs=96.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECC-eEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~-~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++..+.+.+++ ..+.+++|||+|++.+..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 45799999999999999999999999998 7778999999889999876 689999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
++|||+++++||+++..|+.++.+.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~ 108 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKV 108 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 16
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.89 E-value=1e-22 Score=160.06 Aligned_cols=111 Identities=24% Similarity=0.436 Sum_probs=98.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.|. .+.+|.+.++ .+.+.+++..+.+.+||++|++.|..++..+++++|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 35799999999999999999999999998 6778888765 466788889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++ ..|+.++++..++.|++++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 117 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 117 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 99999999999999 7999999988766666553
No 17
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.89 E-value=7.9e-23 Score=158.33 Aligned_cols=109 Identities=19% Similarity=0.485 Sum_probs=99.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCc
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~ 173 (209)
..+...+||+++|+.|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+|||+|++.+..++..+++++|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 34456899999999999999999999999988 77889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCC
Q 028397 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQG 203 (209)
Q Consensus 174 ~illvfDit~~~Sf~~i~~wl~~i~~~~~~ 203 (209)
++++|||++++++|+++..|+.++......
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 118 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGS 118 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999876443
No 18
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.89 E-value=6.3e-23 Score=162.07 Aligned_cols=98 Identities=19% Similarity=0.355 Sum_probs=87.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|++|||||||+++|+++.|. .+.+| +.++ .+.+.+++..+.++||||+|++.|. +++++|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 456899999999999999999999999998 56555 4444 4888999999999999999999886 88999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
++|||+++++||+++..|+.++....
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~ 115 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFR 115 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998874
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.89 E-value=7.5e-23 Score=157.45 Aligned_cols=104 Identities=30% Similarity=0.591 Sum_probs=90.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999998 77889999988888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+|||+++++||+++..|++++.+..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~ 108 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML 108 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 20
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.89 E-value=1.4e-22 Score=162.43 Aligned_cols=111 Identities=20% Similarity=0.431 Sum_probs=97.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.|. .+.+|++.++ ...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 35799999999999999999999999998 7777888655 466788899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++. .|+.++....++.|++|+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 119 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLV 119 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999999997 899999988766666553
No 21
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=6.2e-23 Score=162.67 Aligned_cols=110 Identities=21% Similarity=0.433 Sum_probs=94.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+.|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999999988 77888999999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|||+++++||+++..|++.+........++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~pi 134 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAEL 134 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 9999999999999999999998886544333
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=2.1e-22 Score=156.60 Aligned_cols=110 Identities=26% Similarity=0.496 Sum_probs=100.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
+...+||+++|+++||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 456799999999999999999999999998 6778899999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
++|||++++.+|+++..|+.++.+.....++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 119 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMV 119 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999988643333
No 23
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=159.29 Aligned_cols=109 Identities=26% Similarity=0.432 Sum_probs=99.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999998 77788899998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
+|||++++.+|+++..|+.++........+
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p 132 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIV 132 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCe
Confidence 999999999999999999999887543333
No 24
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.8e-22 Score=159.58 Aligned_cols=111 Identities=15% Similarity=0.345 Sum_probs=99.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.|. .+.+|++.++ .+.+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 46799999999999999999999999988 6777887665 567788888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++. .|+.++.+..++.|++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 128 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 128 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999999998 899999988766666553
No 25
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=9.3e-23 Score=160.75 Aligned_cols=110 Identities=22% Similarity=0.500 Sum_probs=100.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc-cccccccccCcEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~-~~~~~~~~~a~~il 176 (209)
..+||+++|+++||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+|||+|++++. .++..+++++|++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 5799999999999999999999999998 778899999998999999999999999999999998 88999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
+|||+++++||+++..|+.++.+.. .+.+++|
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil 132 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL 132 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999999998873 3444443
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.7e-22 Score=155.93 Aligned_cols=109 Identities=27% Similarity=0.545 Sum_probs=91.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++....+.+++..+.+++||++|++.+..++..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 46899999999999999999999999985 5678899999888888999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
++|||++++++|+++..|+.++........+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 118 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 118 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999887643333
No 27
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.89 E-value=3.1e-22 Score=153.72 Aligned_cols=111 Identities=26% Similarity=0.468 Sum_probs=101.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.|.++..+.+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999988 77889999988888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
+|||++++++|+++..|++++.......++++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ii 115 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 99999999999999999999998854444443
No 28
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=2.6e-22 Score=160.26 Aligned_cols=108 Identities=19% Similarity=0.466 Sum_probs=100.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+|||+|++.|..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 4799999999999999999999999998 788899999998899999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
|||+++++||+.+..|+.++........+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 115 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVL 115 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999887644333
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.89 E-value=1.2e-22 Score=155.69 Aligned_cols=110 Identities=17% Similarity=0.359 Sum_probs=101.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999999999998 778899999998999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
|||+++++||+++..|+.++....++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piil 114 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTAL 114 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999999999999999999987765555554
No 30
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.89 E-value=2.3e-22 Score=157.25 Aligned_cols=110 Identities=23% Similarity=0.433 Sum_probs=100.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999999998 77889999998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|||++++++|+++..|+.++.......+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 118 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVI 118 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 9999999999999999999998875443333
No 31
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.89 E-value=1.8e-22 Score=156.31 Aligned_cols=109 Identities=22% Similarity=0.451 Sum_probs=99.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999988 67788899988889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
+|||++++++|+++..|+.++........+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 122 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTV 122 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999887643333
No 32
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=157.89 Aligned_cols=110 Identities=20% Similarity=0.439 Sum_probs=101.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 35799999999999999999999999998 77889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|||++++++|+++..|+.++........++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ 124 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNK 124 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 9999999999999999999998886544443
No 33
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=4.8e-22 Score=155.00 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=95.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++ .+.+.+++..+.+++||++|++.|..++..+++++|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 45799999999999999999999999988 7778888776 678889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||+++++||+.+..|+.++.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~ 106 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDM 106 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999776
No 34
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.7e-22 Score=162.73 Aligned_cols=109 Identities=27% Similarity=0.477 Sum_probs=93.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++..+.+.+++..+.++||||+|+++|..++..+++++|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 35799999999999999999999999998 77889999999889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
+|||+++++||+++..|+.++.......++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~p 120 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVA 120 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCe
Confidence 999999999999999999999887543333
No 35
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=8.5e-23 Score=162.58 Aligned_cols=105 Identities=27% Similarity=0.460 Sum_probs=89.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.|. .+.++.|.++..+.+.+++..+.++||||+|++.+..++..+++++|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45799999999999999999999999988 77789999998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
+|||++++++|+++..|++++.....
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~ 131 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAH 131 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC-
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988754
No 36
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.89 E-value=2.5e-22 Score=156.89 Aligned_cols=103 Identities=11% Similarity=0.175 Sum_probs=95.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++.++ ...+.+++..+.+++||++|++.+..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456899999999999999999999999988 7777888776 67888999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
++|||+++++||+++..|+.++.+.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRV 118 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
No 37
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=2.7e-22 Score=155.50 Aligned_cols=105 Identities=25% Similarity=0.461 Sum_probs=95.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 346799999999999999999999999988 7788999999889999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
++|||+++.++|+++..|++++....
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYA 109 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998763
No 38
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.4e-22 Score=158.09 Aligned_cols=105 Identities=25% Similarity=0.532 Sum_probs=98.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|+++||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.||||+|++.+..++..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 356799999999999999999999999998 7888999999889999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|+|||++++++|+++..|+.++.+..
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~ 117 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYC 117 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.88 E-value=7.8e-23 Score=163.13 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=95.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc-ccccccccCcEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~-~~~~~~~~a~~i 175 (209)
...+||+++|++|||||||+++|.+..+. .+.++++.++..+.+.+++..+.+.+|||+|++.+.. ++..|++++|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 34799999999999999999999876655 5567778888888889999999999999999998775 888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
|+|||+++++||+++..|+.++..... ..|+++
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 135 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999988753 444444
No 40
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=2.4e-22 Score=156.33 Aligned_cols=97 Identities=18% Similarity=0.313 Sum_probs=86.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|++|||||||+++|.++.|..+.+|++.. +.+.+.+++..+.+++|||+|+++ ..|++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 45799999999999999999999999998777788754 467888999999999999999987 468899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|||+++++||+++..|++.+...
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~ 101 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSL 101 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999987776554
No 41
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.88 E-value=9.2e-23 Score=164.89 Aligned_cols=115 Identities=23% Similarity=0.384 Sum_probs=104.6
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCc
Q 028397 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 95 ~~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~ 173 (209)
......+||+++|++|||||||+++|+.+.+. .+.++.|.++....+.+++..+.+.+|||+|++.+..++..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34456899999999999999999999988887 67789999999899999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 174 ~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
++++|||+++++||+++..|+.++.+..++.|++|+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv 125 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 125 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999999999999999999998766666553
No 42
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-23 Score=166.46 Aligned_cols=110 Identities=21% Similarity=0.478 Sum_probs=100.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.|||++|++.+..++..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35799999999999999999999999988 77788898999899999998999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|||++++++|+++..|+.++.......+++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 131 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQV 131 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 9999999999999999999999886444443
No 43
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=1.9e-22 Score=154.95 Aligned_cols=107 Identities=23% Similarity=0.522 Sum_probs=92.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 589999999999999999999999998 7788999998888889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 179 FDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
||++++++|+++..|+..+.+......+
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p 110 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQ 110 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999887643333
No 44
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.88 E-value=6.7e-22 Score=154.21 Aligned_cols=111 Identities=22% Similarity=0.445 Sum_probs=98.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
+..+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+++|||+|++.|..++..+++++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 46799999999999999999999999988 6677777554 567788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++. .|+..+.+..++.|++|+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 115 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999999998 799999988766665553
No 45
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.88 E-value=6.5e-22 Score=157.35 Aligned_cols=110 Identities=23% Similarity=0.517 Sum_probs=100.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 4799999999999999999999999998 778899999988889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCC-CceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQG-PNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~-~~~iI 208 (209)
|||++++++|+++..|+.++...... .|++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999999999999999887643 34433
No 46
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=4.2e-22 Score=159.61 Aligned_cols=113 Identities=20% Similarity=0.416 Sum_probs=96.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 96 ~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
.....+||+++|++|||||||+++|.++.+. .+.++++ +.....+.+++..+.+++|||+|++.|..++..+++++|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3456899999999999999999999999998 6666776 4456777889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 175 ILFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 175 illvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
+++|||+++++||+++. .|+..+.+..++.|++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 140 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999997 899999988766666553
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4.1e-22 Score=157.75 Aligned_cols=110 Identities=25% Similarity=0.487 Sum_probs=100.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++.|.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 35799999999999999999999999988 78889999998888888989999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|||++++++|+++..|+.++.+......++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 131 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVM 131 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 9999999999999999999998886433333
No 48
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.88 E-value=7.5e-22 Score=157.48 Aligned_cols=111 Identities=21% Similarity=0.423 Sum_probs=99.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+|||+|+++|..++..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 46899999999999999999999999998 77788887765 45788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
+|||++++++|+++ ..|+..+.+..++.|++|+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 135 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 135 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999 6899999888666665553
No 49
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=158.91 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=89.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|.+.++ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 45899999999999999999999999998 6777888776 677777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||+++++||+.+..|+.++.+.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~ 124 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEG 124 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=160.76 Aligned_cols=109 Identities=24% Similarity=0.442 Sum_probs=90.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++..+.+.+++..+.+.||||+|++.+..++..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35799999999999999999999999998 77889999998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
+|||+++++||+++..|+.++........+
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 132 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIV 132 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999887543333
No 51
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=4.4e-23 Score=164.22 Aligned_cols=110 Identities=20% Similarity=0.439 Sum_probs=97.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++.++....+.+++..+.+.||||+|++.+..++..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999999988 67788899999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCceE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQGPNLM 207 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~~~~~i 207 (209)
+|||+++++||+++..|+.++........++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ 141 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNK 141 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCE
Confidence 9999999999999999999998876544443
No 52
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.88 E-value=3.8e-22 Score=161.00 Aligned_cols=112 Identities=25% Similarity=0.443 Sum_probs=79.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+++|||+|++.|..++..+++++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 345799999999999999999999999988 6667776544 56778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 176 llvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
++|||+++++||+++. .|+.++.+..++.|++|+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 144 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV 144 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999999997 799999988766666553
No 53
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.88 E-value=9.6e-22 Score=152.44 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=93.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++. +.+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999988 77778887765 77888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||++++++|+++..|+.++.+.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~ 109 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRV 109 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999543
No 54
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=8.1e-22 Score=157.98 Aligned_cols=111 Identities=21% Similarity=0.434 Sum_probs=94.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 46799999999999999999999999998 66778877665 44788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSI-VGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i-~~wl~~i~~~~~~~~~iIl 209 (209)
+|||++++++|+++ ..|+..+.+..++.|++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 135 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILV 135 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999 6899999888666666553
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.88 E-value=6.3e-22 Score=151.59 Aligned_cols=109 Identities=15% Similarity=0.241 Sum_probs=95.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.+|++..+ .+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988 6777887665 4667788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
|||+++++||+++..|+.++.+. ..+.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 113 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 113 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEE
Confidence 99999999999999999999876 23444443
No 56
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.2e-22 Score=162.56 Aligned_cols=112 Identities=15% Similarity=0.259 Sum_probs=92.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcC-CccccccccccCc
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAV 173 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~--~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~-~~~~~~~~~~~a~ 173 (209)
....+||+++|++|||||||+++|++.. |....+++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3457999999999999999999999644 455566788898889999999999999999999987 5667888999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 174 AILFMFDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 174 ~illvfDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
++|+|||+++++||+++..|+.++.+. ..+.|++|
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piil 150 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 999999999999999999999998764 23444444
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.88 E-value=5.3e-22 Score=153.35 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=85.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcC--CccccccccccCcEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~--~~~~~~~~~~~a~~il 176 (209)
..+||+++|++|||||||+++|.++.+....++.|.++..+.+.+++..+.+.+||++|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 46899999999999999999999998886667888888888899999999999999999998 6777888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||+++++||+++..|+.++.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~ 106 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRT 106 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 58
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=5.8e-22 Score=152.53 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=83.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc-ccccccccCcEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF 177 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~-~~~~~~~~a~~ill 177 (209)
.+||+++|++|||||||+++|.+..+. .+.++.+.++..+.+.+++..+.+.+||++|++.+.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 589999999999999999999988877 5666677888888999999999999999999999876 78888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
|||+++++||+++..|+.++.+... +.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 114 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 9999999999999999999988754 444444
No 59
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.87 E-value=7.2e-22 Score=153.92 Aligned_cols=111 Identities=13% Similarity=0.243 Sum_probs=96.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 456899999999999999999999999988 6667777655 46678899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
++|||++++++|+.+..|+.++.+... ..|++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 128 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLL 128 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999988743 444444
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=4.6e-22 Score=154.41 Aligned_cols=104 Identities=23% Similarity=0.417 Sum_probs=83.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.++ +..+.+.+||++|++.+..++..+++++|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 35799999999999999999999999988 778889999888888887 6678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
++|||++++++|+++..|+.++....
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~ 111 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHA 111 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
No 61
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=8.9e-22 Score=156.63 Aligned_cols=104 Identities=27% Similarity=0.442 Sum_probs=97.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 35799999999999999999999999988 77889999999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+|||++++++|+++..|+.++....
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~ 110 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQA 110 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999997764
No 62
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=1.3e-21 Score=153.14 Aligned_cols=111 Identities=23% Similarity=0.483 Sum_probs=98.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeE-EEEEEECCe---------EEEEEEEecCCCcCCccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~-~~~~~~~~~---------~~~l~i~D~~G~e~~~~~~~ 166 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++.++. .+.+.+++. .+.+.+||++|++.+..++.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999988 77889998887 677777766 89999999999999999999
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
.+++++|++|+|||++++.+|+++..|+.++.... ...|+++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 132 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEE
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999999999999999999999998875 3444444
No 63
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=156.47 Aligned_cols=108 Identities=22% Similarity=0.508 Sum_probs=99.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|+++||||||+++|+++.+. .+.++++.++....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4699999999999999999999999988 788899999988899999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
|||++++.+|+++..|+.++........+
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 127 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQ 127 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999887654333
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.87 E-value=1.4e-21 Score=153.75 Aligned_cols=104 Identities=24% Similarity=0.463 Sum_probs=95.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeE------------------------------
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------ 147 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~------------------------------ 147 (209)
..+||+++|+++||||||+++|+++.+. .+.+|++.++..+.+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999999998 788899999988888887766
Q ss_pred -------EEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 148 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 148 -------~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
+.+.||||+|++.+..++..+++++|++++|||++++++|+++..|+.++....+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~ 147 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN 147 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC
Confidence 8999999999999999999999999999999999999999999999999988766
No 65
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.87 E-value=3.4e-22 Score=155.58 Aligned_cols=111 Identities=21% Similarity=0.448 Sum_probs=83.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.+|++..+. ..+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 34799999999999999999999999988 67777775543 34566788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 177 FMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 177 lvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
+|||+++++||+++. .|++++.+..++.|++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 118 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLV 118 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999999998 799999988766665553
No 66
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=154.66 Aligned_cols=111 Identities=13% Similarity=0.243 Sum_probs=97.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
+...+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 456799999999999999999999999988 6677777654 46778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
++|||+++++||+.+..|+.++.+... +.|++|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 124 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLL 124 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999999988753 444444
No 67
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=1.9e-21 Score=154.72 Aligned_cols=110 Identities=15% Similarity=0.275 Sum_probs=89.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcC-CccccccccccCcEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI 175 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~-~~~~~~~~~~~a~~i 175 (209)
..+||+++|++|||||||+++|++. .|....+++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 4699999999999999999999964 3455556788888888899999999999999999887 667888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 176 LFMFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 176 llvfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
++|||++|++||+++..|+..+.+.. .+.|+++
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piil 119 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEE
Confidence 99999999999999999999988753 2344444
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.87 E-value=2.3e-22 Score=159.72 Aligned_cols=105 Identities=11% Similarity=0.317 Sum_probs=69.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCC-CcccceeeeeEEEEEEECCe--EEEEEEEecCCCcCCccccccccccC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA 172 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~--~~~-~~~~t~g~~~~~~~~~~~~~--~~~l~i~D~~G~e~~~~~~~~~~~~a 172 (209)
...+||+++|++|||||||+++|.++ .+. .+.+|++.++..+.+.+++. .+.+.+|||+|++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45799999999999999999999999 887 77789998888889999887 89999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 173 ~~illvfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
|++|+|||+++++||+++..|+.++.....
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 127 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARP 127 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCS
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998865
No 69
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=1.4e-21 Score=149.86 Aligned_cols=108 Identities=15% Similarity=0.255 Sum_probs=72.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvf 179 (209)
.+||+++|++|||||||+++|.+..+....++.+.++ .+.+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999999777665556666554 567788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 180 DLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 180 Dit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
|+++++||+++..|+.++.+.. ++.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 111 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIIL 111 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999999998762 3444444
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=2.8e-21 Score=147.51 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=95.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++++.. ..+.+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988 666676644 46778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
|||++++++|+++..|+.++.+.. .+.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 113 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL 113 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999999999999998763 2344443
No 71
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.87 E-value=3.2e-22 Score=160.88 Aligned_cols=111 Identities=25% Similarity=0.544 Sum_probs=98.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCe----------EEEEEEEecCCCcCCccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP 166 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~----------~~~l~i~D~~G~e~~~~~~~ 166 (209)
...+||+++|+++||||||+++|.++.+. .+.+|++.++..+.+.+++. .+.++||||+|++.|..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 34799999999999999999999999998 77789999988888888776 89999999999999999999
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
.+++++|++|+|||++++++|+++..|+.++.... ...|++|
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piil 146 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEE
Confidence 99999999999999999999999999999987764 3444444
No 72
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.87 E-value=1.9e-22 Score=158.58 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=94.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHHHHhcCCCC-Cc-----------ccceeeeeEEEEE-EECCeEEEEEEEecCCCcCCc
Q 028397 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-----------LQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSF 162 (209)
Q Consensus 96 ~~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~-----------~~t~g~~~~~~~~-~~~~~~~~l~i~D~~G~e~~~ 162 (209)
.....+||+++|+++||||||+ +++.+.+. .+ .+|++.++..+.+ .+++..+.+++|||+|+++|.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456899999999999999999 56666666 42 3577888777666 678889999999999999999
Q ss_pred cccccccccCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 163 DHVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 163 ~~~~~~~~~a~~illvfDit------~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
.++..+++++|++|+|||++ +.++|+++..|+.+++....+.|++|+
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv 141 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ 141 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 99999999999999999999 788999999999999655555555553
No 73
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=2.3e-21 Score=148.08 Aligned_cols=109 Identities=12% Similarity=0.234 Sum_probs=92.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4699999999999999999999999988 6667777655 4567889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
|||++++++|+++..|+.++.+... +.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 114 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLL 114 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999999988743 444444
No 74
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=2.3e-22 Score=158.41 Aligned_cols=110 Identities=13% Similarity=0.378 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCC-CcccceeeeeEEEEEEE---CCeEEEEEEEecCCCcCCccccccccccCc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~--~~~-~~~~t~g~~~~~~~~~~---~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~ 173 (209)
.+||+++|++|||||||+++|++. .+. .+.+|+|.++..+.+.+ ++..+.+++|||+|+++|..+++.|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 565 57789999988776655 346789999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 174 ~illvfDit~~-~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
++++|||++++ .+|+++..|+.++....++.|+++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv 118 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILV 118 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 99999999997 6899999999999887665555553
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.86 E-value=5e-21 Score=150.52 Aligned_cols=110 Identities=12% Similarity=0.235 Sum_probs=85.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
+..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 46799999999999999999999999888 6666666544 467788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
+|||+++.++|+++..|+.++..... ..++++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~il 131 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVL 131 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 99999999999999999999987643 344443
No 76
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=8.4e-21 Score=148.29 Aligned_cols=102 Identities=13% Similarity=0.245 Sum_probs=89.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.+|++ +.....+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 5799999999999999999999999988 5556664 4555778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|||++++++|+++..|+.++....
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~ 105 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVK 105 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998863
No 77
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=2.7e-21 Score=151.47 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=90.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|+++||||||+++|.++++..+.+|.|.++ +.+.+++ +.+.+||++|++++..++..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 357999999999999999999999999876777888654 4555655 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
|||+++++||+++..|+.++.+. ..+.++++
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 127 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLI 127 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEE
Confidence 99999999999999999998764 23444443
No 78
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=150.86 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=86.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-CC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~-~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
..+||+++|++|||||||+++|.++. +. .+.+|++. ..+.+.+++ +.+.+|||+|++.+..++..+++++|+++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 47999999999999999999999988 55 66777774 445666664 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||+++++||+++..|+.++.+.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~ 119 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNH 119 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998776
No 79
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.85 E-value=1.3e-20 Score=149.49 Aligned_cols=104 Identities=25% Similarity=0.497 Sum_probs=97.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.+..+. .+.+|++.++....+.+++..+.+++||++|++++..++..++++++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 4799999999999999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
|||+++..+|+++..|+.++.+...
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~ 132 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHAD 132 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999877643
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=1.8e-21 Score=153.58 Aligned_cols=99 Identities=19% Similarity=0.351 Sum_probs=88.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++++. .+.+|++.++.. +. ...+.+.+||++|++++..++..+++++|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 35799999999999999999999999998 778888887652 33 34578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||++++++|+++..|+.++.+.
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~ 119 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDK 119 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.85 E-value=1.1e-20 Score=143.91 Aligned_cols=109 Identities=12% Similarity=0.249 Sum_probs=94.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||++++.++.+. .+.++.+..+ .+.+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 3689999999999999999999999888 5666666543 5677888999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCC--CCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQ--GPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~--~~~~iI 208 (209)
|||++++++|+++..|+.++.+... +.|+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~ii 113 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999999987743 344443
No 82
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.8e-21 Score=151.00 Aligned_cols=109 Identities=12% Similarity=0.244 Sum_probs=94.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++++. .+.+|++.++ .+.+.+++..+.+++||++|++. ..++..+++++|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 45799999999999999999999999998 6777877655 56678899999999999999998 788899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
+|||+++++||+++..|+.++.+.. ...|++|
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil 137 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 9999999999999999999998753 3444444
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=6.3e-21 Score=152.22 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=80.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|++|||||||+++|.++++..+.+|.+.+. ..+.+++ +.+++|||+|+++++.++..|++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 346899999999999999999999998887778887764 4667776 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|||+++++||+++..|+.++.+.
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~ 121 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTD 121 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999764
No 84
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.6e-21 Score=145.98 Aligned_cols=102 Identities=15% Similarity=0.266 Sum_probs=91.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||+++|.++.+. .+.++.+.++. ..+..++..+.+.+|||+|++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3689999999999999999999999988 67777776553 566778889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
|||++++++|+++..|+..+.+..
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~ 104 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIK 104 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988763
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=4.2e-21 Score=151.63 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=84.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCC--cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
....+||+++|+++||||||+++|.++.+.. +.+|++..+. .+ ++..+.++||||+|++++..++..+++++|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 3458999999999999999999999999874 4678885443 33 3456889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 175 ILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 175 illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|+|||+++++||+++..|+.++.+.
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~ 115 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKH 115 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998664
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=1.5e-20 Score=148.93 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=90.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|++|||||||+++|.++++..+.+|.+.+ ...+.+++ +.+++|||+|++.++.++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999999988777888765 35667776 889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
|||+++++||+++..|+.++.+. ..+.|+++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 129 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVI 129 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEE
Confidence 99999999999999999998764 23344443
No 87
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.84 E-value=2.3e-20 Score=148.54 Aligned_cols=104 Identities=25% Similarity=0.512 Sum_probs=94.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
..+||+++|++|||||||++++.+..+. .+.+++|.++....+.+++..+.+.+||++|++.++.++..++++++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 3699999999999999999999999988 777899989888899999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
|||+++..+|+++..|+.++.....
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~ 108 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHAD 108 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999877643
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=6.2e-21 Score=146.03 Aligned_cols=96 Identities=22% Similarity=0.329 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
+||+++|++|||||||+++|.++.|..+.||.+... ..+.. ..+.+++|||+|++.+..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999999887778888443 34444 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh
Q 028397 181 LTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 181 it~~~Sf~~i~~wl~~i~~~ 200 (209)
+++++||+++..|+.++...
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~ 96 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAE 96 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999998654
No 89
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=6.2e-21 Score=151.58 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=86.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEE--E-CCeEEEEEEEecCCCcCCcccc---ccccc
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLM--V-QGARIAFSIWDVGGDSRSFDHV---PIACK 170 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~--~-~~~~~~l~i~D~~G~e~~~~~~---~~~~~ 170 (209)
+...+||+++|+++||||||++++.+ .+... ++.+.++..+.+. + ++..+.+++|||+|+++|..+. ..|++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh-cCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 34589999999999999999997765 44421 4555554444333 3 3677999999999999998877 89999
Q ss_pred cCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 171 DAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 171 ~a~~illvfDit~~--~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
++|++|+|||++++ ++++++..|+.++.+..++.|++|+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv 135 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999998 8888888999998777766666654
No 90
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.84 E-value=5e-21 Score=153.99 Aligned_cols=107 Identities=24% Similarity=0.400 Sum_probs=93.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCCcCCccccccccccCcE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ 174 (209)
....+||+++|++|||||||+++|+++.+. .+.++.+.+.....+..+ +..+.+.+|||+|++.+..++..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 345899999999999999999999999988 667788877776666554 445999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhCCC
Q 028397 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQG 203 (209)
Q Consensus 175 illvfDit~~~Sf~~i~~wl~~i~~~~~~ 203 (209)
+|+|||++++.||+++..|+.++......
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGN 116 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999887544
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=1.6e-20 Score=144.51 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=87.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|++|||||||+++|.++.+..+.+|++... ..+.++ .+.+.+|||+|++.+..++..+++++|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 36899999999999999999999999987778887554 455555 57899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||+++++||+++..|+.++.+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~ 103 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEE 103 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTC
T ss_pred EECCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988654
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=9.5e-21 Score=148.92 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=87.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|+++||||||+++|.++++..+.+|++.+. +.+.+++ +.+++|||+|++++..++..+++++|++++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999998887777887554 4555654 8899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
||+++++||+++..|+.++.+. ..+.|+++
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 122 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLI 122 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEE
Confidence 9999999999999999999775 23444444
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.3e-20 Score=148.80 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=92.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|+++||||||+++|.++.+. .+.++++..+. ..+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34699999999999999999999999988 67777775543 56678889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+|||++++++|+++..|+..+.+..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~ 109 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIK 109 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887753
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.83 E-value=9.7e-21 Score=148.80 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=86.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|++|||||||+++|.++.+..+.+|.|.. .+.+.++ .+.+++|||+|++.+..++..+++++|++++|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4699999999999999999999998776777888854 3456666 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||+++++||+++..|+.++.+.
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~ 112 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEE 112 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTC
T ss_pred EECcCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988553
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.83 E-value=1.9e-20 Score=148.55 Aligned_cols=99 Identities=20% Similarity=0.308 Sum_probs=82.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|++|||||||+++|.++++..+.||++.. ...+..+ .+.+++|||+|++++..++..+++++|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 45799999999999999999999999988777777744 3445554 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|||+++++||+++..|+.++.+.
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~ 125 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQE 125 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998654
No 96
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.83 E-value=5.7e-20 Score=143.98 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=90.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|++|||||||+++|.+++...+.+|++.+. +.+.++ .+.+++|||+|++++..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 357999999999999999999999988447888888553 455555 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
|||+++++||+++..|+.++.+. ..+.|+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 124 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLI 124 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEE
Confidence 99999999999999999998765 23344443
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.82 E-value=1.5e-19 Score=153.65 Aligned_cols=109 Identities=22% Similarity=0.447 Sum_probs=97.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
.+||+++|+++||||||+++|+++.+. .+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++++|++++|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 589999999999999999999999998 6777777554 56778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhCCCCceEEc
Q 028397 179 FDLTSRCTLNSIV-GWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 179 fDit~~~Sf~~i~-~wl~~i~~~~~~~~~iIl 209 (209)
||+++++||+++. .|++.+....++.|++++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv 265 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILV 265 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 9999999999997 899999988766665553
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=3.7e-20 Score=145.61 Aligned_cols=98 Identities=22% Similarity=0.322 Sum_probs=87.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+||+++|+++||||||+++|.++++..+.+|++... ..+.++ .+.+++|||+|++++..++..+++++|++++|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 47999999999999999999999998887777887543 455555 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhh
Q 028397 179 FDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 179 fDit~~~Sf~~i~~wl~~i~~~ 200 (209)
||+++++||+++..|+.++.+.
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~ 118 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDE 118 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTC
T ss_pred EeCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=8.6e-22 Score=157.14 Aligned_cols=111 Identities=22% Similarity=0.445 Sum_probs=96.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~i 175 (209)
....+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+++|||+|++++..++..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 346799999999999999999999999988 6666776544 56677788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhhCCCCceEE
Q 028397 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQGPNLMI 208 (209)
Q Consensus 176 llvfDit~~~Sf~~i~-~wl~~i~~~~~~~~~iI 208 (209)
++|||+++++||+++. .|+..+....++.|++|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piil 139 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139 (204)
Confidence 9999999999999997 89999987765555444
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=4.2e-20 Score=144.00 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=87.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|++|||||||++++.++++..+.+|.+... ..+.+++ +.+.+||++|++.+..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 347999999999999999999999988876777888543 4555654 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhC--CCCceEE
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKWN--QGPNLMI 208 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~~--~~~~~iI 208 (209)
|||++++++|+++..|+.++.+.. .+.|+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 124 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLV 124 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEE
Confidence 999999999999999999997652 3444443
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.81 E-value=3.5e-20 Score=159.84 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc---ccccccccCcE
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA 174 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~----~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~---~~~~~~~~a~~ 174 (209)
||+++|++|||||||++++.++.+.. +.+|+|.++.. ++ ..++++||||+|||+|.. +++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988765542 45788888753 23 458999999999999974 46899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 175 ILFMFDLTSR--CTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 175 illvfDit~~--~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+|+|||++++ ++++.+..|++++.+..++.|++|+
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillv 112 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVL 112 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 9999999998 4445555667777777776665553
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.2e-20 Score=155.36 Aligned_cols=111 Identities=11% Similarity=0.136 Sum_probs=85.0
Q ss_pred ceeeEEEEEcCC---------CCCHHHHHHHHhc---CCCC-Ccccce-eeeeEEEEEE--------------ECCeEEE
Q 028397 98 LVSLKISLLGDC---------QIGKTSFVVKYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIA 149 (209)
Q Consensus 98 ~~~~KIvvlGd~---------~vGKTSLi~~~~~---~~~~-~~~~t~-g~~~~~~~~~--------------~~~~~~~ 149 (209)
...+||+++|++ +||||||+++|++ +.|. .+.+|+ +.++..+.+. +++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 346999999999 9999999999999 6676 666665 5665444333 5678899
Q ss_pred EEEEe-----------------------cCCCcCCccccccccc---------------------cCcEEEEEEeCCCh-
Q 028397 150 FSIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR- 184 (209)
Q Consensus 150 l~i~D-----------------------~~G~e~~~~~~~~~~~---------------------~a~~illvfDit~~- 184 (209)
++||| ++|+++|..++..||+ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 8899999999999998 89999999999999
Q ss_pred -hhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 185 -CTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 185 -~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
+||+++..|+.++.+. ..+.|++|
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piil 203 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVV 203 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEE
Confidence 9999999999999765 23444444
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=4.1e-19 Score=142.38 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=80.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCe-EEEEEEEecCCCcCCcc-ccccccccCcEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAI 175 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~-~~~l~i~D~~G~e~~~~-~~~~~~~~a~~i 175 (209)
...+||+++|++|||||||+++|+++.|....++++.++.. +.+++. .+.+++|||+|++.|.. ++..|++++|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 35799999999999999999999999998555666666553 666654 68999999999999988 888999999999
Q ss_pred EEEEeCCChh-hHHHHHH-HHHHHHh
Q 028397 176 LFMFDLTSRC-TLNSIVG-WYSEARK 199 (209)
Q Consensus 176 llvfDit~~~-Sf~~i~~-wl~~i~~ 199 (209)
++|||+++.+ ++.++.. |.+.+..
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~ 108 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLID 108 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhh
Confidence 9999999964 5777665 4444444
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=8.7e-19 Score=149.67 Aligned_cols=108 Identities=20% Similarity=0.342 Sum_probs=87.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC-----cccccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIAC 169 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~-----~~~~~~~~ 169 (209)
..+||+++|++|||||||+++|.++ .+. .+.+|++.++.. +.+++ .+.+++|||+|++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 3689999999999999999999987 333 344577776653 44444 689999999999998 78899999
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHH---HHHHhhCCCCceEEc
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWY---SEARKWNQGPNLMIL 209 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl---~~i~~~~~~~~~iIl 209 (209)
+++|++|+|||+++++||+++..|. .++....++.|++++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999999999999999999998765 455555666666553
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.1e-18 Score=157.62 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=88.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
....+||+++|+++||||||+++|.++++..+.+|.+.++. .+.+ ..+.+.||||+|++.|..++..+++++|++|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 34579999999999999999999999998877888887754 3333 4478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh
Q 028397 177 FMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 177 lvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+|||++++++|+++..|+.++.+.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~ 418 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIIND 418 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTS
T ss_pred EEEECcchhHHHHHHHHHHHHhhh
Confidence 999999999999999999998654
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.77 E-value=8.4e-19 Score=151.23 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=81.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
...+||+++|+++||||||+++|.++.+....+|++.++. .+.. ..+.++||||+|++.|..++..+++++|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999999998866678887654 3333 45789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh
Q 028397 178 MFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 178 vfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
|||++++++|+++..|+.++...
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~ 261 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAE 261 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTC
T ss_pred EEECCchHHHHHHHHHHHHHHhh
Confidence 99999999999999888887554
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=3.4e-17 Score=126.43 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=74.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc------cccccccc-
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK- 170 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~------~~~~~~~~- 170 (209)
..+||+++|++|||||||+++|.+..+. .+.++++.+.....+.+++ ..+++|||+|++.+. .+...|++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 3689999999999999999999998876 6667666666666677765 578999999999875 34466775
Q ss_pred -cCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 171 -DAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 171 -~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
++|++++|||+++.+ +...|+.++.+.
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~ 107 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLMEM 107 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHHT
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHhc
Confidence 899999999999865 445688888763
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=2e-17 Score=127.92 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=77.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~il 176 (209)
...+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++. .+.+|||+|++.|..++..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35789999999999999999999999988 66677776776677777775 4679999999999999999999999999
Q ss_pred EEEeCCC---hhhHHHH
Q 028397 177 FMFDLTS---RCTLNSI 190 (209)
Q Consensus 177 lvfDit~---~~Sf~~i 190 (209)
+|||+++ .++++.+
T Consensus 84 ~v~d~~~~~~~~~~~~l 100 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAI 100 (178)
T ss_dssp EEEETTCCCCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 9999999 5555444
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.72 E-value=3e-17 Score=127.98 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=79.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc--------ccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIA 168 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~--------~~~ 168 (209)
..+||+++|++|||||||+++|.+..+. ...+++..++....+.+++. .+.+|||+|++++.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3589999999999999999999988753 44555566777778888875 47899999998653211 246
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~ 202 (209)
++++|++++|||++++.||+ ...|++++.+...
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~ 113 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP 113 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc
Confidence 89999999999999999987 4588888887654
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=8.2e-17 Score=125.90 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=80.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc------cccccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK 170 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~------~~~~~~~~ 170 (209)
+..+||+++|++|||||||+++|.++.+. .+.+++..+.....+.+++ ..+++|||+|++.+. .+...|++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 45799999999999999999999998776 6667777777777777765 678999999999885 34666775
Q ss_pred --cCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 171 --DAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 171 --~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.++++++|+|.++ +++...|+.++.+.
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~ 111 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLMEM 111 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHTT
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHhc
Confidence 4999999999875 67778899888763
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.69 E-value=2.5e-18 Score=156.92 Aligned_cols=110 Identities=22% Similarity=0.430 Sum_probs=85.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEE------EEE--CCeEEEEEEEecCCCcCCcccccc
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVPI 167 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~------~~~--~~~~~~l~i~D~~G~e~~~~~~~~ 167 (209)
....+||+++|+++||||||++++.++.|. .+.+|+|.++..+. +.+ ++..+.+.+||++|++.|..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456899999999999999999999999998 77889998887652 222 345689999999999999999999
Q ss_pred ccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEEc
Q 028397 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMIL 209 (209)
Q Consensus 168 ~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iIl 209 (209)
+++++|++|+|||+++. +.+..|+.++..+.++.|++|+
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV 156 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVV 156 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEE
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999764 6678999999998776666653
No 112
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=1.5e-17 Score=133.60 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=80.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC----cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccccccccc--
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 171 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~----~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~-- 171 (209)
...+||+++|++|||||||+++|.++.+.. +.++++.++ ..+.+.+|||+|++.+...+..|+++
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 347899999999999999999999988763 334444433 45678999999999999999999988
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh
Q 028397 172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 172 --a~~illvfDit-~~~Sf~~i~~wl~~i~~~ 200 (209)
+|++|+|||++ ++++|+++..|+.++...
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~ 112 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 112 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhc
Confidence 89999999999 999999999999998664
No 113
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.5e-17 Score=129.56 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=75.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCc----ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccccccccc---
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--- 171 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~----~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~--- 171 (209)
..+||+++|++|||||||+++|.++.+... .++++.+ ...+.+.+|||+|++.+...+..++++
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 468999999999999999999999887532 2222222 245678999999999999888888877
Q ss_pred -CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh
Q 028397 172 -AVAILFMFDLT-SRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 172 -a~~illvfDit-~~~Sf~~i~~wl~~i~~~ 200 (209)
+|++++|||++ +.++|+++..|+.++...
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 148 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 148 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhh
Confidence 89999999999 999999999999888654
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.67 E-value=3.6e-16 Score=126.95 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=74.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCC------cC----Cccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD------SR----SFDHVP 166 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~------e~----~~~~~~ 166 (209)
...+||+++|++|||||||+++|+++.+. ...+.+..++....+..++ ..+.||||+|+ +. +..+ .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~-~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTI-T 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence 34699999999999999999999999886 3333333333333334443 67999999999 33 2222 3
Q ss_pred cccccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCceEE
Q 028397 167 IACKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~--i~~wl~~i~~~~~~~~~iI 208 (209)
.++..+|++|+|||++++.||+. ...|+..+....+..|+++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piil 147 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVI 147 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEE
Confidence 45788999999999999999863 3468888877644555554
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.64 E-value=5.9e-16 Score=117.56 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC-------cccccccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD 171 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~-------~~~~~~~~~~ 171 (209)
.||+++|++|||||||+++|.++.+. ...+++..+.....+..++. .+.+|||+|++.+ ...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999998754 44455555666677777765 6789999999874 3445667899
Q ss_pred CcEEEEEEeCCChhhH
Q 028397 172 AVAILFMFDLTSRCTL 187 (209)
Q Consensus 172 a~~illvfDit~~~Sf 187 (209)
+|++++|||+++..++
T Consensus 80 ~~~~i~v~d~~~~~~~ 95 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQ 95 (161)
T ss_dssp CSEEEEEEESSSCCCH
T ss_pred CCEEEEEEECCCcccH
Confidence 9999999999986554
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.62 E-value=4.5e-16 Score=122.35 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=68.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCC----------CcCCcccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G----------~e~~~~~~~~ 167 (209)
..+||+++|++|||||||+++|.++.|. .+.++.+.+.......+++ .+.+|||+| ++.+..++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4799999999999999999999999876 5556666555444445554 589999999 7778888888
Q ss_pred ccccC---cEEEEEEeCCChhhHHHHH--HHHH
Q 028397 168 ACKDA---VAILFMFDLTSRCTLNSIV--GWYS 195 (209)
Q Consensus 168 ~~~~a---~~illvfDit~~~Sf~~i~--~wl~ 195 (209)
|++++ |++++|||+++..++.... .|+.
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 131 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLK 131 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 88887 9999999999998887754 4543
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=1.3e-16 Score=124.55 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCC-----------CcCCccccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA 168 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G-----------~e~~~~~~~~~ 168 (209)
+||+++|++|||||||+++|.++.+. .+.+++..+. ..+.++ .+.+|||+| ++.+..++..|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999988 5666544333 333443 689999999 67778888888
Q ss_pred ccc-CcEEEEEEeCCChhhHHHH-HHHHHH
Q 028397 169 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE 196 (209)
Q Consensus 169 ~~~-a~~illvfDit~~~Sf~~i-~~wl~~ 196 (209)
+++ ++++++|||++|.++|+++ ..|..+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~ 105 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKR 105 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhcc
Confidence 988 9999999999999999998 678763
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.57 E-value=2.3e-14 Score=119.50 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=75.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc------ccccc-
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC- 169 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~------~~~~~- 169 (209)
...+||+++|++|||||||+++|.+..+. .+.+.+..+.....+..+ ...+.+|||+|++.+... ...|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 35799999999999999999999998876 555655555444444444 378999999999988753 35666
Q ss_pred -ccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 170 -KDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 170 -~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.++|++++|||.++.++. ..|..++.+.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~ 109 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM 109 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc
Confidence 589999999999997654 3577777664
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.56 E-value=8.5e-15 Score=122.01 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc----------cccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC 169 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~----------~~~~~~ 169 (209)
.||+++|++|||||||+++|.+..+. .+.+++..+.....+.+++. .+.+|||+|+..+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998776 66677777777777777775 789999999988764 556677
Q ss_pred --ccCcEEEEEEeCCChhhHHHHHHHHHH
Q 028397 170 --KDAVAILFMFDLTSRCTLNSIVGWYSE 196 (209)
Q Consensus 170 --~~a~~illvfDit~~~Sf~~i~~wl~~ 196 (209)
.++|++++|+|.++.+++..+..|+.+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~ 108 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFE 108 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHH
Confidence 899999999999998887766665543
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.54 E-value=1.3e-14 Score=113.41 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=72.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCC----------CcCCcccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 167 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G----------~e~~~~~~~~ 167 (209)
...+||+++|+.|||||||+++|.++.+..+.++.+.+........+. .+.+|||+| ++.+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 346899999999999999999999998665556666544433333333 477999999 6677788888
Q ss_pred ccccC---cEEEEEEeCCChhh--HHHHHHHHHHH
Q 028397 168 ACKDA---VAILFMFDLTSRCT--LNSIVGWYSEA 197 (209)
Q Consensus 168 ~~~~a---~~illvfDit~~~S--f~~i~~wl~~i 197 (209)
|++++ +++++|+|.++..+ +..+..|+.+.
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~ 132 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL 132 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc
Confidence 88877 99999999988643 44455666554
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.53 E-value=4.9e-14 Score=117.75 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=78.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc------cccccc--
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC-- 169 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~------~~~~~~-- 169 (209)
..+||+++|++|||||||++++.+..+. .+.++++.+.....+..++. .+.+|||+|+..+.. +...|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999999998876 66777777777777777765 489999999998876 566676
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
.++|++++|+|.++.+ ....|..++.+..
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~ 108 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME 108 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC
Confidence 6899999999999863 4445666666554
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.53 E-value=3.2e-14 Score=119.45 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=74.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc----------ccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~----------~~~ 167 (209)
..+||+++|.+|||||||+++|.+..+. .+.+.+..+.....+..++. .+.+|||+|++.+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4689999999999999999999998876 66666666666666666654 5778999999987632 233
Q ss_pred cc--ccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028397 168 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 168 ~~--~~a~~illvfDit~~~Sf~~i~~wl~~i 197 (209)
|+ .++|++++|+|.++.+++..+..|+.+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~ 111 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL 111 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc
Confidence 33 6999999999999977766555555443
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.53 E-value=1.9e-14 Score=122.84 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=78.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC--cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc----------ccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHV 165 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~----------~~~ 165 (209)
...-+|+++|.+|||||||+++|++..+.. ..+.+..+.....+..+ ....+.||||+|+..+. ...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 457899999999999999999999988762 22222222222222332 25778999999997655 556
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 166 ~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
..+++++|++++|+|.++..++++...|++.+...
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~ 121 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL 121 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc
Confidence 77889999999999999999999999999999874
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.53 E-value=1.7e-14 Score=121.33 Aligned_cols=94 Identities=20% Similarity=0.120 Sum_probs=72.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc------cccccccc--
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 170 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~------~~~~~~~~-- 170 (209)
.+||+++|++|||||||+++|.+..+. ...+.+ ++..+...++. ...+++|||+|++.+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 589999999999999999999987654 555533 33334445565 6789999999999886 35567776
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 171 DAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 171 ~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
++|++++|||.++.+++ ..|..++.+
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~ 105 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE 105 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh
Confidence 69999999999987654 457766665
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.53 E-value=3.2e-14 Score=121.26 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=74.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-ceeeeeEEEEEEECCeEEEEEEEecCCCcCC--------ccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVP 166 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~-t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~--------~~~~~ 166 (209)
....+|+++|.+|||||||+++|++.++. ...+ |+. +.....+.. ...++.||||+|+... .....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 45678999999999999999999998875 2233 332 222122222 3578999999998873 44556
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHH-HHHHhhCCCCceEE
Q 028397 167 IACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQGPNLMI 208 (209)
Q Consensus 167 ~~~~~a~~illvfDit~~~Sf~~i~~wl-~~i~~~~~~~~~iI 208 (209)
.+++++|++++|||.++..+.. ..|+ +.+++..++.|+++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~il 122 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILL 122 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEE
T ss_pred HHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEE
Confidence 7889999999999999876544 4554 56666543444443
No 126
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.52 E-value=1.7e-14 Score=120.14 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=75.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccc------
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------ 170 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~------ 170 (209)
..+||+++|+.|||||||+++|.++.+. ...+.+..+.....+..++ ..+.||||+|++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 5799999999999999999999998863 3333333344444555555 48899999999988777666654
Q ss_pred ---cCcEEEEEEeCCChhhHHHH-HHHHHHHHhhC
Q 028397 171 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWN 201 (209)
Q Consensus 171 ---~a~~illvfDit~~~Sf~~i-~~wl~~i~~~~ 201 (209)
++|++++|+|+++.. |.+. ..|++.+.+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~ 146 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTF 146 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHh
Confidence 889999999998765 5555 47888887753
No 127
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.51 E-value=5.7e-14 Score=114.90 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=63.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEECCeEEEEEEEecCCCc-----------CCcc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS-----------RSFD 163 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~~~~~~~l~i~D~~G~e-----------~~~~ 163 (209)
...+||+++|++|||||||++++.+..+. ...+ ++..++....+.+++. .+.||||+|.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHH
Confidence 45799999999999999999999998876 4444 3445555556666664 67899999943 3444
Q ss_pred ccccccccCcEEEEEEeCCChhh
Q 028397 164 HVPIACKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 164 ~~~~~~~~a~~illvfDit~~~S 186 (209)
....+++++|++|+|+|+++..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~ 127 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE 127 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH
Confidence 45556778999999999976444
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.50 E-value=3e-14 Score=128.55 Aligned_cols=94 Identities=15% Similarity=0.263 Sum_probs=56.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc--------ccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIA 168 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~--~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~--------~~~ 168 (209)
..+||+++|.+|||||||+++|.+.+. ....+.+..++....+.+++ +.+.+|||+|++.+.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 368999999999999999999998864 25566666677777778877 568999999998766443 447
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHH
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWY 194 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl 194 (209)
++++|++++|||.+++.+++++..|.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~ 335 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIR 335 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHH
T ss_pred cccCCEEEEEEECCCCcchhhhHHHH
Confidence 89999999999999999987544333
No 129
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.49 E-value=2.4e-13 Score=112.43 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=68.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-CC-Ccccc-eeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc---------
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------- 165 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~-~~-~~~~t-~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~--------- 165 (209)
...+||+++|.+|||||||++++++.. +. ...++ +..+.....+..++ ..+.||||+|+..+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 346999999999999999999999887 54 33343 44444445555655 468999999987764322
Q ss_pred --ccccccCcEEEEEEeCCChhhH-HHHHHHHHHH
Q 028397 166 --PIACKDAVAILFMFDLTSRCTL-NSIVGWYSEA 197 (209)
Q Consensus 166 --~~~~~~a~~illvfDit~~~Sf-~~i~~wl~~i 197 (209)
..+++++|++|+|||+++.... ..+..|+.++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~ 132 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEI 132 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2367899999999999963222 2334555554
No 130
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.49 E-value=5.5e-14 Score=117.40 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=71.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccccc---------cc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI---------AC 169 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~---------~~ 169 (209)
..+||+++|+.|+|||||+++|+++.+....++.+.+.....+.++.....+.||||+|++.+..+... ++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 479999999999999999999998886422222222222223333334577999999999887644332 13
Q ss_pred ccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhC
Q 028397 170 KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWN 201 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i-~~wl~~i~~~~ 201 (209)
+.+|++|+|||++.. +|... ..|+..+.+..
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~ 149 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSF 149 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHh
Confidence 479999999999764 46554 47888887663
No 131
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.48 E-value=6.1e-14 Score=121.48 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=56.3
Q ss_pred cceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHh
Q 028397 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARK 199 (209)
Q Consensus 130 ~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit----------~~~Sf~~i~~wl~~i~~ 199 (209)
+|+|+... .+.+ ..++++|||++||+.++.+|..||++++++|+|||++ +.++|++...|+.++.+
T Consensus 147 ~TiGi~~~--~~~~--~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 147 KTTGIHEY--DFVV--KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCSCEEE--EEES--SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ceeeeEEE--EEEe--eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 34565433 3333 3588999999999999999999999999999999999 88999999999999876
Q ss_pred h
Q 028397 200 W 200 (209)
Q Consensus 200 ~ 200 (209)
.
T Consensus 223 ~ 223 (340)
T 4fid_A 223 N 223 (340)
T ss_dssp C
T ss_pred h
Confidence 4
No 132
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.48 E-value=1.1e-13 Score=120.44 Aligned_cols=63 Identities=13% Similarity=0.222 Sum_probs=53.3
Q ss_pred eEEEEEEEecCCCcCCccccccccccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 146 ~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit----------~~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
..++++||||+||+.|+.++..||++++++|+|||++ +.++|+++..|++++.+. .++.|++|
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiL 255 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 255 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEE
Confidence 6799999999999999999999999999999999999 899999999999999764 24444444
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=2.4e-14 Score=127.59 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=73.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCC----------cCCccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVP 166 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~----------e~~~~~~~ 166 (209)
..+||+++|+++||||||+++|+++++. ...+.+..+.....+..++.. ++||||+|+ |.|..++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999998874 455655666666677777754 889999998 44444443
Q ss_pred -cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 167 -IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 167 -~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.+++.+|++++|||+++..++++. .|+..+.+.
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~ 285 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA 285 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc
Confidence 478899999999999999999886 588877653
No 134
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.47 E-value=1.3e-13 Score=114.09 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=56.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccccceee--eeEEEEEEECCeEEEEEEEecCCC--------cCCcccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL--NLINKTLMVQGARIAFSIWDVGGD--------SRSFDHVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~--~~~~~~~~~~~~~~~l~i~D~~G~--------e~~~~~~~~ 167 (209)
..+||+++|.+|||||||++++.+..+. ...++.+. +.....+..++ ..+.||||+|. +.+......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4799999999999999999999988866 43333332 22233444454 56889999997 333333333
Q ss_pred cc----ccCcEEEEEEeCCC
Q 028397 168 AC----KDAVAILFMFDLTS 183 (209)
Q Consensus 168 ~~----~~a~~illvfDit~ 183 (209)
++ +++|++|+|+|+++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB
T ss_pred HHHhcCCCCCEEEEEEeCCC
Confidence 33 89999999999985
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.46 E-value=4.2e-13 Score=115.68 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=54.8
Q ss_pred cceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHh
Q 028397 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARK 199 (209)
Q Consensus 130 ~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit----------~~~Sf~~i~~wl~~i~~ 199 (209)
+|+|+.. ..+.++ .+++++||++||+.++.+|..||++++++|+|||++ +.++|++...|++++.+
T Consensus 153 ~TiGi~~--~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 153 PTTGIIE--YPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CCCSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred ceeeEEE--EEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 4556443 344444 488999999999999999999999999999999655 78889999999999875
Q ss_pred h
Q 028397 200 W 200 (209)
Q Consensus 200 ~ 200 (209)
.
T Consensus 229 ~ 229 (327)
T 3ohm_A 229 Y 229 (327)
T ss_dssp S
T ss_pred h
Confidence 4
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.46 E-value=1.4e-13 Score=122.64 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC---------cccccccc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC 169 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~---------~~~~~~~~ 169 (209)
-||+++|.++||||||+++|++++.. ...+.+..+.....+.+++. .+++|||+|++.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999988753 44555555666677777776 4688999998753 33456789
Q ss_pred ccCcEEEEEEeCCChhhHHH--HHHHHH
Q 028397 170 KDAVAILFMFDLTSRCTLNS--IVGWYS 195 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~--i~~wl~ 195 (209)
+++|++|+|||.++..++.. +..|+.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~ 107 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR 107 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999998766543 334443
No 137
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.45 E-value=3.4e-14 Score=114.03 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=68.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEEC-CeEEEEEEEecCCC----------cCCccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGD----------SRSFDHVP 166 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~-~~~~~l~i~D~~G~----------e~~~~~~~ 166 (209)
..+||+++|+.|||||||+++|+++.+. ...++.+.........++ .....+.||||+|. +.+..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 4689999999999999999999998742 222222222222233343 34567899999994 34455666
Q ss_pred ccccc---CcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 167 ~~~~~---a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
.|++. +|++++|+|.++..+. .-..|+..+.+
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~ 142 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP 142 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh
Confidence 77766 7789999999986442 23456666665
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.42 E-value=6.2e-14 Score=124.91 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=62.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCc--------CCcccccccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACKD 171 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e--------~~~~~~~~~~~~ 171 (209)
..||+++|.++||||||+++|.+..+....++.|.+.......+......+.+|||+|++ .+......++++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 469999999999999999999988775334445543333333333334578999999986 466677788999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028397 172 AVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 172 a~~illvfDit~~~Sf~~i~~wl~~i~ 198 (209)
+|++|+|+|.++..++.. .|+.++.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l 107 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKIL 107 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHH
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHH
Confidence 999999999999877654 3444433
No 139
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.41 E-value=5.3e-13 Score=116.22 Aligned_cols=74 Identities=14% Similarity=0.278 Sum_probs=59.0
Q ss_pred ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 028397 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW 200 (209)
Q Consensus 131 t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~----------~~Sf~~i~~wl~~i~~~ 200 (209)
|+|++. ..+.++ .+.+++||++||+.++.+|..||++++++|+|||+++ .++|++...|++++.+.
T Consensus 180 T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 180 TTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp CCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred eeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 445443 344554 5889999999999999999999999999999999999 56799999999999764
Q ss_pred --CCCCceEE
Q 028397 201 --NQGPNLMI 208 (209)
Q Consensus 201 --~~~~~~iI 208 (209)
..+.|++|
T Consensus 256 ~~~~~~piiL 265 (353)
T 1cip_A 256 KWFTDTSIIL 265 (353)
T ss_dssp GGGTTSEEEE
T ss_pred ccccCCcEEE
Confidence 23444444
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.40 E-value=1.8e-12 Score=112.57 Aligned_cols=108 Identities=13% Similarity=0.170 Sum_probs=77.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc---------ccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA 168 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~---------~~~~~ 168 (209)
..++|+++|.+|||||||++++.+..+. ...+....+.....+..+ ...+.+|||+|...... ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4689999999999999999999988764 333322222222333333 46789999999865421 11234
Q ss_pred cccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhCCCCceEE
Q 028397 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 169 ~~~a~~illvfDit~~~--Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
...+|++++|+|+++.. ++++...|+.++....++.|+++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piil 285 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLV 285 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEE
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 45799999999999988 88999999999988654444444
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.40 E-value=2.8e-13 Score=117.47 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEECCeEEEEEEEecCCC----cCCcccccccccc--
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGD----SRSFDHVPIACKD-- 171 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~~~~~~~l~i~D~~G~----e~~~~~~~~~~~~-- 171 (209)
.+|+++|.++||||||++++.+.++. ..++ |...++ ..+.+++ ...+.|||++|+ +.+..+...|++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 36889999999999999999987654 3333 223232 3455554 247899999995 3455666777665
Q ss_pred -CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhC
Q 028397 172 -AVAILFMFDLTS---RCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 172 -a~~illvfDit~---~~Sf~~i~~wl~~i~~~~ 201 (209)
++++|+|||+++ +++++++..|+.++..+.
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~ 269 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN 269 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhh
Confidence 999999999999 899999999999999875
No 142
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.39 E-value=4.7e-13 Score=119.13 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=69.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccc-------ccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PIA 168 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~-------~~~ 168 (209)
...+||+++|+.++|||||+++|.+..+. ...+.+..+...+.+.+++. ..+.+|||+|++.+..+. ..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 34789999999999999999999998874 44444455566667777654 378999999999887663 347
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
++++|++|+|||.+..+ ....|+.++++.
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~ 139 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM 139 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc
Confidence 89999999999994443 345677777665
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.37 E-value=1.1e-13 Score=123.86 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=69.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCC--------CcCCcccccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIAC 169 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G--------~e~~~~~~~~~~ 169 (209)
+...+|+++|.+|||||||+++|.+..+....++.|.+.......++.....+++|||+| ++++......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 446799999999999999999999887764444556555555555555566899999999 667777888899
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 170 ~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
+++|++|+|+|.++. +.....|+.++.+.
T Consensus 101 ~~ad~il~VvD~~~~--~~~~d~~l~~~l~~ 129 (456)
T 4dcu_A 101 DEADVIIFMVNGREG--VTAADEEVAKILYR 129 (456)
T ss_dssp HHCSEEEEEEESSSC--SCHHHHHHHHHHTT
T ss_pred hhCCEEEEEEeCCCC--CChHHHHHHHHHHH
Confidence 999999999998764 33444455554443
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.36 E-value=4.3e-13 Score=121.17 Aligned_cols=90 Identities=18% Similarity=0.360 Sum_probs=73.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeeEEEEEEECCeEEEEEEEecCCCc-CCcc--------ccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFD--------HVPIA 168 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~--~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e-~~~~--------~~~~~ 168 (209)
.+||+++|.++||||||+++|.+.++ ....+.+..++....+.+++. .+.+|||+|++ ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998864 355666666777777888764 58899999998 6643 23467
Q ss_pred cccCcEEEEEEeCCChhhHHHHH
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIV 191 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~ 191 (209)
++++|++|+|||++++.+++..+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH
T ss_pred hhcccEEEEEecCCCCCCHHHHH
Confidence 89999999999999998987754
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.36 E-value=2.5e-12 Score=112.34 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=69.4
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC---------Cccccccc
Q 028397 100 SLK-ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA 168 (209)
Q Consensus 100 ~~K-IvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~---------~~~~~~~~ 168 (209)
.++ |+++|.+|+|||||++++.+..+. ...+....+.....+.+++ ..+.+|||+|.-. |.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 456 999999999999999999988775 4444334455667788887 4578999999622 22222 24
Q ss_pred cccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhC
Q 028397 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWN 201 (209)
Q Consensus 169 ~~~a~~illvfDit~~~--Sf~~i~~wl~~i~~~~ 201 (209)
+..+|++++|+|++++. +++.+..|.+.+....
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~ 289 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIG 289 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence 78999999999999987 7777877877776654
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.36 E-value=5.2e-13 Score=120.08 Aligned_cols=98 Identities=19% Similarity=0.353 Sum_probs=67.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc--------cccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIA 168 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~--------~~~~ 168 (209)
..+||+++|++|||||||+++|.+.++. ...+++..++....+.+++. .+.+|||+|...+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3689999999999999999999987653 55566666666666777774 5789999998765433 2346
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
++++|++++|||.+++.+++. ..|++.+..
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~ 330 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVKH 330 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHTT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhccC
Confidence 889999999999999877765 567666643
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.35 E-value=7.6e-13 Score=118.49 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=72.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-C-CcccceeeeeEEEEEEECCeEEEEEEEecCC----------CcCCcccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHV 165 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~-~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G----------~e~~~~~~ 165 (209)
...+||+++|+++||||||+++|.+.+. . ...+++..+.....+..++. .++||||+| +|.|..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4478999999999999999999997753 3 56666666666677777775 788999999 77777666
Q ss_pred cc-ccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 166 PI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 166 ~~-~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
.. +++.+|++|+|+|.++..+ +.-..|+..+.+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~ 304 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE 304 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH
Confidence 54 7789999999999998544 233456666655
No 148
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=4.8e-13 Score=116.63 Aligned_cols=99 Identities=9% Similarity=0.200 Sum_probs=64.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC-CCC-Ccc--------cceeeeeEEEEEEECCeEEEEEEEecCCC-------cCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS 161 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~-~~~-~~~--------~t~g~~~~~~~~~~~~~~~~l~i~D~~G~-------e~~ 161 (209)
..+||+++|++|+|||||++++.+. .+. .+. +|++.++....+..++..+.+++|||+|+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999996654 444 332 46666665555666777889999999999 778
Q ss_pred ccccc-------cccccCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHH
Q 028397 162 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEA 197 (209)
Q Consensus 162 ~~~~~-------~~~~~a~~i-----------llvfDit~-~~Sf~~i~-~wl~~i 197 (209)
..+.. .|+++++++ +++|++++ ..+|..+. .|+..+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 87876 777766655 58899887 77888776 566655
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.35 E-value=1.8e-12 Score=108.38 Aligned_cols=101 Identities=8% Similarity=0.118 Sum_probs=65.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-CC-Cc-------ccceeeeeEEEEEEECCeEEEEEEEecCCCcC-------Cc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RS-------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-------SF 162 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~-~~-~~-------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~-------~~ 162 (209)
..+||+++|.+|+|||||+++++... +. ++ .+|++.++....+..++..+.+.+|||+|... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 47999999999999999999976554 44 43 56778787777777778888999999999843 22
Q ss_pred ccc-------ccccc-------------cCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 163 DHV-------PIACK-------------DAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 163 ~~~-------~~~~~-------------~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
.+. ..|+. .+|+++++.+.++..-...-..|++.+..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 143 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 222 23333 27789999877653222222456666655
No 150
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.34 E-value=7.7e-12 Score=110.29 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=79.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEE----------------EEEEE---CCeEEEEEEEecCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLIN----------------KTLMV---QGARIAFSIWDVGG 157 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~----------------~~~~~---~~~~~~l~i~D~~G 157 (209)
....+||+++|..++|||||+++|.+................ ..... ......+.||||+|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 345799999999999999999999975433211100000000 00000 12237899999999
Q ss_pred CcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCce
Q 028397 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNL 206 (209)
Q Consensus 158 ~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~ 206 (209)
++.|......++..+|++|+|+|.++..++.....|+..++.....+.+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~ii 133 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLI 133 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEE
Confidence 9999998888999999999999999988888889998888776543333
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.29 E-value=2e-12 Score=116.59 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=65.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CC-Cc---------------------------ccceeeeeEEEEEEECCeE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE-RS---------------------------LQMAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~--~~-~~---------------------------~~t~g~~~~~~~~~~~~~~ 147 (209)
...+||+++|..++|||||+++|++.. +. .+ ....|+++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 357999999999999999999997551 11 00 0011333333344455556
Q ss_pred EEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHH
Q 028397 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189 (209)
Q Consensus 148 ~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~ 189 (209)
..+.||||+|+++|......+++++|++|+|+|.++.+++..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~ 152 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccc
Confidence 789999999999999999999999999999999999876644
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.26 E-value=4.9e-12 Score=112.66 Aligned_cols=100 Identities=13% Similarity=0.221 Sum_probs=71.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCC-Ccc---------------------c------ceeeeeEEEEEEECCeEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSL---------------------Q------MAGLNLINKTLMVQGARI 148 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~~~-~~~---------------------~------t~g~~~~~~~~~~~~~~~ 148 (209)
..+||+++|..++|||||+++|+.+ .+. ... . ..|.........++....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4689999999999999999999864 333 110 0 011211111223334457
Q ss_pred EEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 149 ~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
.+.||||+|+++|......+++.+|++|+|||.++ .+|+++..|..+.++
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~ 134 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTRE 134 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHH
Confidence 89999999999999888889999999999999999 899987766555443
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.26 E-value=5.8e-12 Score=111.09 Aligned_cols=102 Identities=12% Similarity=0.133 Sum_probs=75.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCc--c------cceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGN--------EQERS--L------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~--------~~~~~--~------~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
...+||+++|..++|||||+++|.+. .|..+ . .+.|.++....+.++.....+.||||+|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45799999999999999999999873 23211 0 12344443344455555578899999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
......+++.+|++|+|+|.++.... ....|+..++..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~ 126 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV 126 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc
Confidence 88888889999999999999987543 445676666654
No 154
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=1.2e-11 Score=107.99 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=67.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEECCeE---------------EEEEEEecCCCcCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS 161 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~~~~~---------------~~l~i~D~~G~e~~ 161 (209)
.+||+++|.++||||||++++.+..+. ..+| |++.+.. .+.+++.. ..+++|||+|+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 479999999999999999999988764 4444 4443332 34455432 57999999999875
Q ss_pred c----ccccc---ccccCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q 028397 162 F----DHVPI---ACKDAVAILFMFDLTS----------RCTLNSIVGWYSEA 197 (209)
Q Consensus 162 ~----~~~~~---~~~~a~~illvfDit~----------~~Sf~~i~~wl~~i 197 (209)
. .+... +++++|++++|+|+++ .+.++.+..|..++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 3 34333 4789999999999987 35677776666665
No 155
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.24 E-value=5.7e-12 Score=113.31 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=57.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC--------------------------------cccceeeeeEEEEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVG--NEQER--------------------------------SLQMAGLNLINKTLMV 143 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~--~~~~~--------------------------------~~~t~g~~~~~~~~~~ 143 (209)
...+||+++|..++|||||+++|+. +.+.+ ...|++..+ ..+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEec
Confidence 4568999999999999999999974 32210 011222211 23333
Q ss_pred CCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh---hhHHHHHHHHHHH
Q 028397 144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEA 197 (209)
Q Consensus 144 ~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~---~Sf~~i~~wl~~i 197 (209)
+ ...+.||||+|+++|......++..+|++|+|+|.++. +||++...|.+.+
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l 173 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA 173 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH
Confidence 3 36789999999999998888889999999999999986 5666544454444
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.24 E-value=3.6e-11 Score=107.30 Aligned_cols=85 Identities=9% Similarity=0.107 Sum_probs=64.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CC------------------------------CcccceeeeeEEEEEEECC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE------------------------------RSLQMAGLNLINKTLMVQG 145 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~--~~------------------------------~~~~t~g~~~~~~~~~~~~ 145 (209)
...++|+++|..++|||||+++|+... +. +..+.+.++.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 357999999999999999999995431 11 111223344443344444
Q ss_pred eEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 146 ~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
...+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 45899999999999998888899999999999999985
No 157
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.24 E-value=1.9e-11 Score=108.94 Aligned_cols=89 Identities=15% Similarity=0.277 Sum_probs=62.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc-----------c
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----------V 165 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~-----------~ 165 (209)
..+||+++|++|||||||++++.+..+. ...+.+..+.....+.++|. .+.+|||+|+.++... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999988763 44555545555567778886 4689999998543222 1
Q ss_pred -ccccccCcEEEEEEeCCChhhHHH
Q 028397 166 -PIACKDAVAILFMFDLTSRCTLNS 189 (209)
Q Consensus 166 -~~~~~~a~~illvfDit~~~Sf~~ 189 (209)
..+++.+|++++++|.++..+++.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 235778999999999998877765
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.24 E-value=1.2e-12 Score=119.69 Aligned_cols=93 Identities=9% Similarity=0.061 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illv 178 (209)
..+|+++|..++|||||+++|.+..+. .+.+++..++....+..++ ...+.||||+|++.|..++..+++.+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 578999999999999999999988877 5556555555444444422 23688999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHH
Q 028397 179 FDLTSRCTLNSIVGW 193 (209)
Q Consensus 179 fDit~~~Sf~~i~~w 193 (209)
||.++....+....|
T Consensus 83 VDa~dg~~~qt~e~l 97 (537)
T 3izy_P 83 VAADDGVMKQTVESI 97 (537)
T ss_dssp CBSSSCCCHHHHHHH
T ss_pred EECCCCccHHHHHHH
Confidence 999997665554433
No 159
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.23 E-value=8.8e-12 Score=115.21 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=70.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----cceeeeeEEEEE------------EECCeEEEEEEEecCCCcC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTL------------MVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~-----~t~g~~~~~~~~------------~~~~~~~~l~i~D~~G~e~ 160 (209)
....+|+++|..++|||||++++.+..+..+. +++|..+..... .++.....++||||+|++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 34679999999999999999999876554322 234433321110 0001123589999999999
Q ss_pred CccccccccccCcEEEEEEeCCC---hhhHHHHHH
Q 028397 161 SFDHVPIACKDAVAILFMFDLTS---RCTLNSIVG 192 (209)
Q Consensus 161 ~~~~~~~~~~~a~~illvfDit~---~~Sf~~i~~ 192 (209)
|..++..+++.+|++|+|||.++ ++|++.+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 99999999999999999999999 888887764
No 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.23 E-value=1.5e-11 Score=104.54 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=66.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-ceeeeeEEEEEEECCeEEEEEEEecCCCc---------CCcccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHV 165 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~-t~g~~~~~~~~~~~~~~~~l~i~D~~G~e---------~~~~~~ 165 (209)
....+|+++|.+|||||||++++++..+. ...+ ++. +.....+..+ ...+.+|||+|.+ .+....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 45678999999999999999999988764 2222 222 1111122223 4678999999997 344556
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028397 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 166 ~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~ 198 (209)
..+++.+|++++|+|.++ +.....|+-+..
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l 112 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKL 112 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHH
Confidence 778899999999999987 445555655443
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.22 E-value=2.2e-11 Score=109.99 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=67.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-------CC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCcccccccc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC 169 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~-------~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~ 169 (209)
+..++|+++|..++|||||++++.+.. +. +..+.+..+.....+.+++ ..+.||||+|++.|......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 568999999999999999999999776 22 2222122222222344454 6789999999999988888889
Q ss_pred ccCcEEEEEEeCCC---hhhHHHHH
Q 028397 170 KDAVAILFMFDLTS---RCTLNSIV 191 (209)
Q Consensus 170 ~~a~~illvfDit~---~~Sf~~i~ 191 (209)
..+|++|+|+|.++ +++++.+.
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~ 119 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML 119 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH
Confidence 99999999999998 67766654
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.22 E-value=2.8e-11 Score=107.66 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=68.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCc----------ccce-------------------eeeeEEEEEEECC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QERS----------LQMA-------------------GLNLINKTLMVQG 145 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~---~~~~----------~~t~-------------------g~~~~~~~~~~~~ 145 (209)
...+||+++|..++|||||+++|+++. +.+. ..++ |+........++.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456999999999999999999998654 1111 1121 1111111122333
Q ss_pred eEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 146 ~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
....+.||||+|+++|......++..+|++|+|+|.++... .....|+..+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~ 155 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL 155 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc
Confidence 45679999999999998888888999999999999998643 2334455555443
No 163
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.20 E-value=4.9e-11 Score=105.39 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=62.0
Q ss_pred ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 028397 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW 200 (209)
Q Consensus 131 t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~----------~~Sf~~i~~wl~~i~~~ 200 (209)
|+|+++ +.+.+++ ++++||||+||+.++.+|..||++++++|+|||+++ .++|+++..|++++.+.
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 566654 4556664 889999999999999999999999999999999999 99999999999999875
Q ss_pred --CCCCceEE
Q 028397 201 --NQGPNLMI 208 (209)
Q Consensus 201 --~~~~~~iI 208 (209)
.++.+++|
T Consensus 280 ~~~~~~piiL 289 (402)
T 1azs_C 280 RWLRTISVIL 289 (402)
T ss_dssp TTCSSCCEEE
T ss_pred ccCCCCeEEE
Confidence 24444444
No 164
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.19 E-value=1.8e-11 Score=102.61 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=66.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-C------cccce-----------------e--------------------
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R------SLQMA-----------------G-------------------- 133 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~------~~~t~-----------------g-------------------- 133 (209)
....||+++|+++||||||+++|.+..+. . ..|+. |
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999998873 1 11220 0
Q ss_pred ------eeeEEEEEEECC-eEEEEEEEecCCCcC-------------CccccccccccCcEEE-EEEeCCChhhHHHHHH
Q 028397 134 ------LNLINKTLMVQG-ARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVG 192 (209)
Q Consensus 134 ------~~~~~~~~~~~~-~~~~l~i~D~~G~e~-------------~~~~~~~~~~~a~~il-lvfDit~~~Sf~~i~~ 192 (209)
+......+.+.+ ....+.||||+|... +..+...|++++++++ +|+|.++..+.+....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000000111110 136799999999642 3456677888888776 6999988766655556
Q ss_pred HHHHHHh
Q 028397 193 WYSEARK 199 (209)
Q Consensus 193 wl~~i~~ 199 (209)
|+..+..
T Consensus 184 ~~~~~~~ 190 (299)
T 2aka_B 184 IAKEVDP 190 (299)
T ss_dssp HHHHHCT
T ss_pred HHHHhCC
Confidence 7766654
No 165
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=8e-11 Score=103.88 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc------ceeeeeEEEE---------------EEECC-eEEEEEEEecCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ------MAGLNLINKT---------------LMVQG-ARIAFSIWDVGG 157 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~------t~g~~~~~~~---------------~~~~~-~~~~l~i~D~~G 157 (209)
+||+++|.++||||||++++.+.... ...| +.|..+.... ..+++ ..+.++||||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999988743 3333 2232211100 11233 257899999999
Q ss_pred CcC----Cccccc---cccccCcEEEEEEeCCCh-----------hhHHHHHHHHHHHHh
Q 028397 158 DSR----SFDHVP---IACKDAVAILFMFDLTSR-----------CTLNSIVGWYSEARK 199 (209)
Q Consensus 158 ~e~----~~~~~~---~~~~~a~~illvfDit~~-----------~Sf~~i~~wl~~i~~ 199 (209)
+.. .+.+.. .+++++|++++|+|+++. +.++.+..|..++..
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~ 140 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDY 140 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHH
Confidence 854 333333 347899999999999986 678877776666643
No 166
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.18 E-value=8.2e-11 Score=103.82 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=68.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--ceeeeeEEEEEEE-------------C--C----eEEEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW 153 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~---~~~-~~~~--t~g~~~~~~~~~~-------------~--~----~~~~l~i~ 153 (209)
..+||+++|..++|||||++++.+. .+. +..+ |+...+....+.. + + ....+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4699999999999999999999843 333 3333 5555555444422 1 2 13789999
Q ss_pred ecCCCcCCccccccccccCcEEEEEEeCC----ChhhHHHHHHH
Q 028397 154 DVGGDSRSFDHVPIACKDAVAILFMFDLT----SRCTLNSIVGW 193 (209)
Q Consensus 154 D~~G~e~~~~~~~~~~~~a~~illvfDit----~~~Sf~~i~~w 193 (209)
||+|++.|.......+..+|++|+|+|.+ .+++++.+..|
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 130 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL 130 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence 99999998776666677889999999999 56777776644
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.18 E-value=2.7e-11 Score=106.62 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=70.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC-------CCCCc--c------cceeeeeEEEEEEECCeEEEEEEEecCCCcCCcc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN-------EQERS--L------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 163 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~-------~~~~~--~------~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~ 163 (209)
..+||+++|..++|||||+++|.+. .|..+ . ...|.++....+.++.....+.||||+|+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 3689999999999999999999863 12111 0 0123333323334444557889999999999988
Q ss_pred ccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 164 ~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
....+++.+|++|+|+|.++....+....| ..++.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~ 116 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ 116 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH
Confidence 888889999999999999985544433333 44444
No 168
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.18 E-value=2.3e-11 Score=112.52 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC--CC---------Ccc---cceeeeeEEEEEEE-----CCeEEEEEEEecCCCcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~--~~---------~~~---~t~g~~~~~~~~~~-----~~~~~~l~i~D~~G~e~ 160 (209)
..+|+++|..++|||||+.+|+... +. ++. .+.|+++....+.+ ++..+.++||||+|++.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4789999999999999999998621 11 111 12344444333333 56789999999999999
Q ss_pred CccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028397 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 161 ~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~ 198 (209)
|......+++.+|++|+|+|.++..+++....|+....
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~ 121 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99888899999999999999999988888888887664
No 169
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.17 E-value=6.8e-11 Score=113.27 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=74.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC------------CCCCc-----c--cceeeeeEEEEEE------------ECCeE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN------------EQERS-----L--QMAGLNLINKTLM------------VQGAR 147 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~------------~~~~~-----~--~t~g~~~~~~~~~------------~~~~~ 147 (209)
...||+++|..++|||||+++|+.. .+.++ . .|+........+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4689999999999999999999864 22111 1 1232222222232 24568
Q ss_pred EEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028397 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 148 ~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i 197 (209)
+.++||||+|+.+|......+++.+|++|+|||.++..+++....|....
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 147 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL 147 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887776544
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.17 E-value=1.6e-11 Score=112.10 Aligned_cols=96 Identities=10% Similarity=0.127 Sum_probs=71.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc------------------CCCCCccc---ceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG------------------NEQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~------------------~~~~~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
...+|+++|.+++|||||+++|+. +.+.++.+ ..|.++......++...+.++||||+|
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 357999999999999999999961 11111111 123333223333333457899999999
Q ss_pred CcCCccccccccccCcEEEEEEeCCChhhHHHHHHHH
Q 028397 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194 (209)
Q Consensus 158 ~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl 194 (209)
++.|......+++.+|++|+|+|.++..+++....|.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~ 128 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME 128 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999999999988888877664
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.17 E-value=9.3e-12 Score=111.66 Aligned_cols=83 Identities=8% Similarity=0.130 Sum_probs=63.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC--------------------------------cccceeeeeEEEEEEE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER--------------------------------SLQMAGLNLINKTLMV 143 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~--~~~~--------------------------------~~~t~g~~~~~~~~~~ 143 (209)
...++|+++|..++|||||+++|++. .+.+ .-.|+...+ . .+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~--~~ 80 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--W--KF 80 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--E--EE
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--E--EE
Confidence 45799999999999999999999864 2211 001222222 2 33
Q ss_pred CCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 144 ~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
+.....+.||||+|+++|......++..+|++|+|+|.++.
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 34456899999999999988888899999999999999976
No 172
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=107.50 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=52.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCe---------------EEEEEEEecCCCcCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSF 162 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~---------------~~~l~i~D~~G~e~~~ 162 (209)
..+||.++|.+|||||||++++.+..+. ...|.+..+.....+.+++. ...+++||++|+..+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3589999999999999999999988765 55554444444455565543 2359999999988754
Q ss_pred c-------ccccccccCcEEEEEEeCCChhhHHHH
Q 028397 163 D-------HVPIACKDAVAILFMFDLTSRCTLNSI 190 (209)
Q Consensus 163 ~-------~~~~~~~~a~~illvfDit~~~Sf~~i 190 (209)
. ....+++++|++++|+|+++.+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v 135 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHV 135 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC---------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence 3 345678999999999999987776543
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.16 E-value=1.6e-11 Score=97.46 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=58.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----------Ccccccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPI 167 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----------~~~~~~~ 167 (209)
...+|+++|++|||||||++++.+..+. .+.++.|.......+.+++ .+.+||++|... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 4679999999999999999999988755 5556666554444444444 578999999753 2222333
Q ss_pred cc---ccCcEEEEEEeCCChhhHHH--HHHHHH
Q 028397 168 AC---KDAVAILFMFDLTSRCTLNS--IVGWYS 195 (209)
Q Consensus 168 ~~---~~a~~illvfDit~~~Sf~~--i~~wl~ 195 (209)
++ ..++++++++|+++..++.. +..|+.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~ 134 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV 134 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHH
Confidence 44 47899999999998766643 445553
No 174
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.15 E-value=1.9e-10 Score=101.43 Aligned_cols=97 Identities=11% Similarity=0.156 Sum_probs=69.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--ceeeeeEEEEEEE-------------C--C----eEEEEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFS 151 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~---~~~-~~~~--t~g~~~~~~~~~~-------------~--~----~~~~l~ 151 (209)
....++|+++|..++|||||+++|.+. .+. +..+ |+...+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345799999999999999999999843 333 3333 5555554443322 1 1 137899
Q ss_pred EEecCCCcCCccccccccccCcEEEEEEeCC----ChhhHHHHHHH
Q 028397 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLT----SRCTLNSIVGW 193 (209)
Q Consensus 152 i~D~~G~e~~~~~~~~~~~~a~~illvfDit----~~~Sf~~i~~w 193 (209)
||||+|++.|.......+..+|++|+|+|.+ ..++++.+..|
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 132 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence 9999999988776666677889999999999 46677776644
No 175
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.13 E-value=8.4e-11 Score=108.69 Aligned_cols=100 Identities=11% Similarity=0.218 Sum_probs=71.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCC---------Cccc---ceeeeeEEE--EEEE---CCeEEEEEEEecCCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE---------RSLQ---MAGLNLINK--TLMV---QGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~~~---------~~~~---t~g~~~~~~--~~~~---~~~~~~l~i~D~~G~e 159 (209)
...+|+++|..++|||||+++++.. .+. ++.+ ..|+++... .+.+ ++..+.++||||+|++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3579999999999999999999752 111 1111 123332211 2222 5667999999999999
Q ss_pred CCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028397 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198 (209)
Q Consensus 160 ~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~ 198 (209)
.|......+++.+|++|+|+|.++..+++....|+....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~ 123 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH
Confidence 998888888999999999999999999999988887664
No 176
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.12 E-value=6.2e-11 Score=109.90 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=64.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-----------------------------cceeeeeEEEEEEECCeE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSL-----------------------------QMAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~-----------------------------~t~g~~~~~~~~~~~~~~ 147 (209)
...+||+++|..++|||||+++|+..... ... ...|+++......++...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45799999999999999999999866432 110 001222222222333345
Q ss_pred EEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 148 ~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
..+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 6889999999999998888999999999999999974
No 177
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.12 E-value=6.3e-11 Score=103.63 Aligned_cols=89 Identities=7% Similarity=0.038 Sum_probs=67.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDi 181 (209)
+|+++|..++|||||+++|. +...|+...+ .. ++.....+.||||+|+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~--~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITM--YN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEE--EE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeE--EE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 1222333332 22 33334569999999999998777778899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhC
Q 028397 182 TSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 182 t~~~Sf~~i~~wl~~i~~~~ 201 (209)
+...+....+|+..+....
T Consensus 93 -~~g~~~qt~e~~~~~~~~~ 111 (370)
T 2elf_A 93 -PQGLDAHTGECIIALDLLG 111 (370)
T ss_dssp -TTCCCHHHHHHHHHHHHTT
T ss_pred -CCCCcHHHHHHHHHHHHcC
Confidence 5556677778887776654
No 178
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.12 E-value=2.6e-11 Score=109.98 Aligned_cols=90 Identities=10% Similarity=0.094 Sum_probs=68.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~ill 177 (209)
+..+|+++|..++|||||++++.+..+. ...+.+..+.....+..++ ..+.||||+|++.|..++..++..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 3578999999999999999999987665 3333232222222333344 468899999999999999999999999999
Q ss_pred EEeCCC---hhhHHHH
Q 028397 178 MFDLTS---RCTLNSI 190 (209)
Q Consensus 178 vfDit~---~~Sf~~i 190 (209)
|||.++ +++++.+
T Consensus 81 VVda~~g~~~qT~e~l 96 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI 96 (501)
T ss_dssp EEETTTBSCTTTHHHH
T ss_pred EeecccCccHHHHHHH
Confidence 999988 5555544
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.10 E-value=9.8e-11 Score=106.87 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=62.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCC----------------C---cccceeeeeEEEEEEECCeEEEEEEEecCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~~~----------------~---~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G 157 (209)
...||+++|..++|||||+++|... .+. + ...+.|+++......++...+.++||||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4689999999999999999999853 110 0 001223333222333333457899999999
Q ss_pred CcCCccccccccccCcEEEEEEeCCChhh
Q 028397 158 DSRSFDHVPIACKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 158 ~e~~~~~~~~~~~~a~~illvfDit~~~S 186 (209)
++.|......+++.+|++|+|+|.++...
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 99999888889999999999999998643
No 180
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.08 E-value=2.7e-11 Score=102.91 Aligned_cols=79 Identities=11% Similarity=-0.045 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCC--CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEeCCChh-hHHHHH
Q 028397 115 SFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV 191 (209)
Q Consensus 115 SLi~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~-Sf~~i~ 191 (209)
+|+.+|+.+.|. ++.||+|..+. ..+..++ ++++||+ +++|+.+++.||+++|++|+|||+++++ +|+.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 689999999996 56789995544 3333333 7899999 9999999999999999999999999998 799999
Q ss_pred HHHHHHHh
Q 028397 192 GWYSEARK 199 (209)
Q Consensus 192 ~wl~~i~~ 199 (209)
.|+.+++.
T Consensus 106 ~~l~~~~~ 113 (301)
T 1u0l_A 106 KFLVLAEK 113 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.07 E-value=1.7e-10 Score=108.39 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=70.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCC------------C-------cccceeeeeEEEEEEECCeEEEEEEEecC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE------------R-------SLQMAGLNLINKTLMVQGARIAFSIWDVG 156 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~--~~~------------~-------~~~t~g~~~~~~~~~~~~~~~~l~i~D~~ 156 (209)
....+|+++|..++|||||+++++.. .+. + ...|++.. ...+..+ .+.++||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEECc
Confidence 45789999999999999999999842 111 0 01122222 1222333 4789999999
Q ss_pred CCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHH
Q 028397 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 157 G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~ 195 (209)
|+..|......+++.+|++|+|+|.++..+++....|..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~ 124 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ 124 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH
Confidence 999999999999999999999999999989888887765
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.06 E-value=1.5e-10 Score=108.71 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=71.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--Cccccee--------eeeEEEEEEE-CCe---------------------
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG--------LNLINKTLMV-QGA--------------------- 146 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--~~~~t~g--------~~~~~~~~~~-~~~--------------------- 146 (209)
..++|+|+|++++|||||++++.+..+. ...|++. .+... ++.+ ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~-t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKV-TIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEE-EEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeE-EEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3689999999999999999999987754 3344331 00000 1111 110
Q ss_pred ------------------------E--EEEEEEecCCCcC---CccccccccccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028397 147 ------------------------R--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 147 ------------------------~--~~l~i~D~~G~e~---~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i 197 (209)
. ..+.||||+|... .......|++++|++|+|+|.++..++.+...|.+.+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0 3589999999664 3456667889999999999999999998888887766
Q ss_pred Hhh
Q 028397 198 RKW 200 (209)
Q Consensus 198 ~~~ 200 (209)
...
T Consensus 227 ~~~ 229 (695)
T 2j69_A 227 KGR 229 (695)
T ss_dssp TTS
T ss_pred Hhh
Confidence 544
No 183
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.04 E-value=7.4e-10 Score=96.60 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=65.8
Q ss_pred CCHHHH--HHHHhcCCCC-C-------cccceeeeeEEEEEEECCeEEEEEEEecCCCcCCccccccccccCcEEEEEEe
Q 028397 111 IGKTSF--VVKYVGNEQE-R-------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (209)
Q Consensus 111 vGKTSL--i~~~~~~~~~-~-------~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfD 180 (209)
+.|.-| +.|+....|. . ..+|+|++. ..+.++ .+.+++|||+||+.++.+|..||++++++|+|||
T Consensus 158 s~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~d 233 (362)
T 1zcb_A 158 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVS 233 (362)
T ss_dssp THHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEE
Confidence 445544 6777776665 2 345778765 345555 4889999999999999999999999999999999
Q ss_pred CCC----------hhhHHHHHHHHHHHHhh--CCCCceEE
Q 028397 181 LTS----------RCTLNSIVGWYSEARKW--NQGPNLMI 208 (209)
Q Consensus 181 it~----------~~Sf~~i~~wl~~i~~~--~~~~~~iI 208 (209)
+++ .++|+++..|+..+.+. ..+.|+||
T Consensus 234 ls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piIL 273 (362)
T 1zcb_A 234 SSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 273 (362)
T ss_dssp TTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred CccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEE
Confidence 999 78999999999998764 23444444
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=4.1e-10 Score=99.98 Aligned_cols=103 Identities=9% Similarity=0.132 Sum_probs=62.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCCC-Cc--------ccceeeeeEEEEEEECCeEEEEEEEecCCCcCCc-----
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----- 162 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~--------~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~----- 162 (209)
+...++|+++|++|+|||||++.+++..+. .. .++++.+.....+..++....+++||+.|...+.
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 345789999999999999999999988763 21 2233333322223334555789999999987642
Q ss_pred --c------------------ccccccccCcEEEEEEeCCCh-hhHHHHH-HHHHHHHh
Q 028397 163 --D------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARK 199 (209)
Q Consensus 163 --~------------------~~~~~~~~a~~illvfDit~~-~Sf~~i~-~wl~~i~~ 199 (209)
. +...++.++++.+++|+++.. .+|+.+. .|+..+..
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~ 166 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 166 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc
Confidence 1 234567788888888888775 5777776 68888753
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.04 E-value=3.3e-10 Score=98.16 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Ccccce---eeee----------------------------------------
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA---GLNL---------------------------------------- 136 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~---g~~~---------------------------------------- 136 (209)
.+|+|+|+.|+|||||++++.+..|. ....+. ....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 49999999999999999999998873 211111 0000
Q ss_pred ---------EEEEEEE-CCeEEEEEEEecCCCcCC-------------ccccccccccCcEEEEEEeCCChhhHHHHHHH
Q 028397 137 ---------INKTLMV-QGARIAFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (209)
Q Consensus 137 ---------~~~~~~~-~~~~~~l~i~D~~G~e~~-------------~~~~~~~~~~a~~illvfDit~~~Sf~~i~~w 193 (209)
....+.+ ......+.+|||+|...+ ..+...|++++|++|+++|.++.+... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 0001111 111246899999999887 557788999999999999876654332 455
Q ss_pred HHHHHhhC
Q 028397 194 YSEARKWN 201 (209)
Q Consensus 194 l~~i~~~~ 201 (209)
+..++...
T Consensus 193 ~~l~~~~~ 200 (360)
T 3t34_A 193 IKISREVD 200 (360)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 55555543
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.02 E-value=1.2e-10 Score=98.91 Aligned_cols=76 Identities=11% Similarity=0.185 Sum_probs=41.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC-CCC-Ccc--------cceeeeeEEEEEEECCeEEEEEEEecCCC-------cC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR 160 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~-~~~-~~~--------~t~g~~~~~~~~~~~~~~~~l~i~D~~G~-------e~ 160 (209)
...+||+++|++|+|||||++++.+. .+. .+. ++.+.+.....+..++....+++||++|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34799999999999999999998764 554 321 22222222223333566789999999998 66
Q ss_pred Cccccc-------cccccCc
Q 028397 161 SFDHVP-------IACKDAV 173 (209)
Q Consensus 161 ~~~~~~-------~~~~~a~ 173 (209)
+..+.. .|+++.+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~s 115 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDES 115 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 666665 5655543
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.02 E-value=1.2e-10 Score=113.92 Aligned_cols=103 Identities=9% Similarity=0.092 Sum_probs=71.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC-------CCCC--------cccceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN-------EQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~-------~~~~--------~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
....+||+++|..++|||||+++|.+. .+.. ...+.|+++....+.++.....+.||||+|+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 455799999999999999999999863 1111 1123454443334445555678999999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
......+++.+|++|+|+|.++....+ ...|+..++..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l 410 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV 410 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc
Confidence 888888899999999999999864433 34455666554
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.01 E-value=1.4e-10 Score=106.21 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=70.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC----Cccccee----eeeEEE------------------EE-----------
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE----RSLQMAG----LNLINK------------------TL----------- 141 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~----~~~~t~g----~~~~~~------------------~~----------- 141 (209)
...+|+|+|..|+|||||++++++..+. ...+++. +..... .+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3689999999999999999999998762 2333221 100000 00
Q ss_pred ---EECCe-EEEEEEEecCCCcC-----------CccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 142 ---MVQGA-RIAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 142 ---~~~~~-~~~l~i~D~~G~e~-----------~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.+++. ...+.||||+|... |......++..+|++|+|+|.++....++...|++.+.+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 00000 02589999999875 3355667788999999999999876777778888887654
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.99 E-value=5.2e-10 Score=105.07 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=70.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---ceeee--eEEEEEEECCeEEEEEEEecCCCc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLN--LINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~--~~~~------------~~~~---t~g~~--~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
...+|+++|..++|||||+++++. +.+. ++.+ ..+.. .....+..+ .+.++||||+|+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCCc
Confidence 468999999999999999999984 3321 1000 01111 111223333 4789999999999
Q ss_pred CCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 160 ~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
.|......+++.+|++|+|+|.++..+++....|.. +.+
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~ 125 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT 125 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH
Confidence 999988999999999999999999888888777754 444
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.97 E-value=1.2e-09 Score=102.77 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=70.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---ceeeeeEE--EEEEE-----CCeEEEEEEEe
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLIN--KTLMV-----QGARIAFSIWD 154 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~--~~~------------~~~~---t~g~~~~~--~~~~~-----~~~~~~l~i~D 154 (209)
...+|+++|..++|||||+.+|+.. .+. ++.+ ..|+.+.. ..+.. ++..+.++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 4689999999999999999999742 111 1110 11222211 12222 23458999999
Q ss_pred cCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHH
Q 028397 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 155 ~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~ 195 (209)
|+|++.|......+++.+|++|+|+|.++..+++....|..
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~ 129 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ 129 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH
Confidence 99999998888899999999999999999877776666643
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.97 E-value=6.2e-10 Score=104.12 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=72.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--------------Cccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~--------------~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~ 161 (209)
...+|+++|..|+|||||++++...... ++.+ ..++.+......+....+.++||||+|++.|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3579999999999999999999843221 1111 1133343344444444688999999999999
Q ss_pred ccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 162 ~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
......+++.+|++++|+|.++.-+.+.. .|+..+...
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~ 125 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL 125 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc
Confidence 98888999999999999999876554433 555555543
No 192
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.95 E-value=1.8e-09 Score=94.30 Aligned_cols=81 Identities=11% Similarity=0.137 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEEEECC-------------------eEEEEEEEecCCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQG-------------------ARIAFSIWDVGGD 158 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~~~~~-------------------~~~~l~i~D~~G~ 158 (209)
+||.++|.+|||||||++++.+.... ..++ |+..+.. .+.+++ ....+++|||+|+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 68999999999999999999876532 2222 2222221 122222 2467999999999
Q ss_pred cCCc----ccccc---ccccCcEEEEEEeCCC
Q 028397 159 SRSF----DHVPI---ACKDAVAILFMFDLTS 183 (209)
Q Consensus 159 e~~~----~~~~~---~~~~a~~illvfDit~ 183 (209)
.++. .+... +++++|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 8653 23332 4789999999999986
No 193
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.94 E-value=5.6e-10 Score=94.29 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
....+|+|+|+++||||||++++.+..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3457999999999999999999998886
No 194
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.91 E-value=2e-10 Score=106.07 Aligned_cols=87 Identities=10% Similarity=0.155 Sum_probs=46.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------Cccc---ceeeeeEEEEEEECCeE
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE-------------------------RSLQ---MAGLNLINKTLMVQGAR 147 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~--~~-------------------------~~~~---t~g~~~~~~~~~~~~~~ 147 (209)
...++|+++|..++|||||+++|+... .. +..+ ..|+........+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 346799999999999999999996321 00 0000 11222222222233334
Q ss_pred EEEEEEecCCCcCCccccccccccCcEEEEEEeCCCh
Q 028397 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (209)
Q Consensus 148 ~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~ 184 (209)
..+.||||+|+++|......++..+|++|+|+|.++.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 6889999999999998888899999999999999853
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.87 E-value=4.3e-09 Score=93.37 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcC----Ccccccccc---ccC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDA 172 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~----~~~~~~~~~---~~a 172 (209)
-+|.++|.+|+|||||++.+.+.... ..++.+........+.+++ ...+.+||++|... +..+...++ ..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 36899999999999999999877543 2223221222222344443 35688999999743 333433333 468
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 173 VAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 173 ~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+.++.++|++ +++++++..|..++..+.
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la 264 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYD 264 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHC
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHh
Confidence 9999999999 778999999998887764
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.80 E-value=2.4e-09 Score=92.58 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=25.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE 126 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~ 126 (209)
....+|+|+|+++||||||+++|++..|.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34579999999999999999999998873
No 197
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.56 E-value=9.5e-08 Score=84.08 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=61.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-C-CcccceeeeeEEEEEEECCeE---------------EEEEEEecCCCcC-
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSR- 160 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~-~-~~~~t~g~~~~~~~~~~~~~~---------------~~l~i~D~~G~e~- 160 (209)
...++.++|.+|||||||++.+.+... . ...|.+..+.....+.+++.. ..+.+||++|...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 358999999999999999999998776 4 555544444444456665521 4689999999543
Q ss_pred ------CccccccccccCcEEEEEEeCCC
Q 028397 161 ------SFDHVPIACKDAVAILFMFDLTS 183 (209)
Q Consensus 161 ------~~~~~~~~~~~a~~illvfDit~ 183 (209)
+......+++++|+++.|+|..+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22223345688999999999875
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.5e-07 Score=80.04 Aligned_cols=84 Identities=15% Similarity=0.288 Sum_probs=61.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCcCC----ccccc---ccccc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVP---IACKD 171 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~----~~~~~---~~~~~ 171 (209)
..+|.++|-++||||||++.+.+.... ..+|.+..+.....+.+++. ++++.||+|--.- ..+.. ...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 478999999999999999999987655 55564444445556677764 5789999996431 11222 23578
Q ss_pred CcEEEEEEeCCChh
Q 028397 172 AVAILFMFDLTSRC 185 (209)
Q Consensus 172 a~~illvfDit~~~ 185 (209)
+|++++|.|.+++.
T Consensus 150 ad~il~vvD~~~p~ 163 (376)
T 4a9a_A 150 CNLLFIILDVNKPL 163 (376)
T ss_dssp CSEEEEEEETTSHH
T ss_pred cCccccccccCccH
Confidence 99999999999874
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.35 E-value=1.3e-08 Score=81.60 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=31.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeeE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI 137 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~t~g~~~~ 137 (209)
.+||+++|++|||||||+++|+...+. .+.++++.++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 479999999999999999999988776 45566666654
No 200
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.23 E-value=4.6e-07 Score=75.41 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
++++++|.+|||||||++++.+.......++.|.+.....+.++. .+.+|||+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 799999999999999999999877654334444433323333332 578999999664
No 201
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.16 E-value=3.1e-08 Score=88.79 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=68.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcC--Ccccc--------ccc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHV--------PIA 168 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~--~~~~~--------~~~ 168 (209)
...+|+++|.+|+||||+.+++...-.....++.+++.........+.....++||..|++. .+..+ ..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999998543222334444332111111112224457899999743 23332 556
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhC
Q 028397 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (209)
Q Consensus 169 ~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~ 201 (209)
+..+++.++|+|.++. +++....|++.+++..
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 7778899999999998 7888888988887653
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.14 E-value=1.3e-06 Score=69.40 Aligned_cols=83 Identities=10% Similarity=0.051 Sum_probs=49.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeeE------------EEEEEECC------------------eEE
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI 148 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~~-~~~t~g~~~~------------~~~~~~~~------------------~~~ 148 (209)
..+|+++|.+|||||||+++|....+.. ....+..++. ...+.++. ..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 4689999999999999999998653221 1111111110 01112221 235
Q ss_pred EEEEEecCCCcCCccccccccccCcEEEEEEeCCChh
Q 028397 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185 (209)
Q Consensus 149 ~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~ 185 (209)
.+.+|||+|+-.... .+....+.+++|+|.++..
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~ 143 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD 143 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc
Confidence 788999999521111 1123578899999987653
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.01 E-value=1.1e-06 Score=76.01 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+|+++|.+|||||||++++..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999863
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.99 E-value=5.2e-06 Score=69.72 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=36.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeeEEEEEEECCeEEEEEEEecCCCcC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
..++++++|.+|||||||++++.+.......+..|.+.....+.++. .+.+|||+|-..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 46899999999999999999999776432222222221112233332 578999999643
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.88 E-value=1.5e-05 Score=72.90 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=67.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc-------------C-----CCCCccc---ceeeeeEEEEEEECCeEEEEEEEecCCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG-------------N-----EQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD 158 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~-------------~-----~~~~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~ 158 (209)
.=+|.++|-.+.|||||..+++. + .+.++.+ .-|+.+....+.+.-..+.++|.||+|+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45799999999999999999951 1 1112211 1244433333344334578999999999
Q ss_pred cCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 159 e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
..|..-....++-+|++|+|+|..+--.-+...-|.. +.++
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~ 151 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR 151 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh
Confidence 9999888888899999999999988655555556643 3433
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.78 E-value=4.8e-05 Score=61.91 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
.....+++.|.+|||||||+..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 346889999999999999999997
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.77 E-value=7.3e-05 Score=70.80 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=25.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
.....+|+|+|+.++|||||++.+++..+
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 34567999999999999999999999876
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.75 E-value=2e-06 Score=74.28 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|.++|.+|+|||||++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999985
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.67 E-value=7.1e-05 Score=63.23 Aligned_cols=43 Identities=5% Similarity=-0.130 Sum_probs=39.6
Q ss_pred CCcCCccccccccccCcEEEEEEeCCChh-hHHHHHHHHHHHHh
Q 028397 157 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARK 199 (209)
Q Consensus 157 G~e~~~~~~~~~~~~a~~illvfDit~~~-Sf~~i~~wl~~i~~ 199 (209)
.++++..+.+.+++++|++++|||+++++ ||+.+.+|+..+..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~ 108 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY 108 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 37899999999999999999999999997 99999999998876
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.53 E-value=2e-05 Score=67.67 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=24.8
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~S 186 (209)
.+.+.||||+|...... .....+|++++|+|.++.+.
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-----
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHH
Confidence 35799999999654332 24588999999999876544
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.36 E-value=0.00039 Score=65.28 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=65.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc--------CC------CCCccc---ceeeeeEEEEEEE--C-----CeEEEEEEEec
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG--------NE------QERSLQ---MAGLNLINKTLMV--Q-----GARIAFSIWDV 155 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~--------~~------~~~~~~---t~g~~~~~~~~~~--~-----~~~~~l~i~D~ 155 (209)
.=+|.++|--..|||||..+++. ++ +.++.+ .-|+.+....+.+ . ...+.++|.||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 35799999999999999999862 11 111111 1244443333332 2 23689999999
Q ss_pred CCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028397 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (209)
Q Consensus 156 ~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~ 199 (209)
+|+-.|..-....++-+|++|+|.|...--.-+...-|....+.
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~ 136 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY 136 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc
Confidence 99999988888888999999999999875444444455554443
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.30 E-value=0.0003 Score=61.07 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=36.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCC-CcccceeeeeEEEEEEECCeEEEEEEEecCCCc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~------~~~-~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e 159 (209)
..+++++|.+|||||||++.+.+. ... ...+ |.+.....+.++.. +.+.||+|-.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~ 223 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGII 223 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcC
Confidence 357999999999999999999975 222 2222 22222233444432 7899999964
No 213
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.25 E-value=5.8e-05 Score=70.15 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=66.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCC------------CCccc---ceeeeeEEEEEEECCeEEEEEEEecCCCcCCccc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG--NEQ------------ERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~--~~~------------~~~~~---t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~ 164 (209)
+|.++|--..|||||..+++. +.. .++.+ .-|+.+....+.+.-..+.++|.||+|+..|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 688999999999999999862 111 11111 1144444444445445678999999999999888
Q ss_pred cccccccCcEEEEEEeCCChhhHHHHHHHHH
Q 028397 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYS 195 (209)
Q Consensus 165 ~~~~~~~a~~illvfDit~~~Sf~~i~~wl~ 195 (209)
....++-+|++|+|+|...--.-+...-|..
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~~~ 114 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILFHA 114 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHHHH
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH
Confidence 8888899999999999987433333344443
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.16 E-value=0.00023 Score=61.04 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
...+.++|.+|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999997
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.10 E-value=0.00069 Score=58.75 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=35.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeeEEEEEEECCeEEEEEEEecCCCcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQ------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~------~~~~~t~g~~~~~~~~~~~~~~~~l~i~D~~G~e~ 160 (209)
..+++++|.+|||||||++.+.+... ....+..|.+.....+.++.. +.++||+|-..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~ 223 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIIN 223 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCc
Confidence 35899999999999999999987521 111111122222233444433 78999999643
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.08 E-value=0.0022 Score=56.83 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=34.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--ceeeeeEEEEE--EECCeEEEEEEEecCCCc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTL--MVQGARIAFSIWDVGGDS 159 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~~--t~g~~~~~~~~--~~~~~~~~l~i~D~~G~e 159 (209)
.+++.++|.+|+|||||++.+.+-.+. .... +.+.......+ ...+....+.++|+.|-.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 467999999999999999999876543 1111 11111111111 112333578899988754
No 217
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.03 E-value=0.00031 Score=56.82 Aligned_cols=42 Identities=7% Similarity=0.147 Sum_probs=27.4
Q ss_pred cCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028397 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197 (209)
Q Consensus 155 ~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i 197 (209)
.+||+.++.+|+.||.++|++|+|.|.+|++-++ .+.-+.++
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL 150 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHI 150 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHH
Confidence 4699999999999999999999999999987654 44444333
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.00 E-value=0.00058 Score=62.95 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=40.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-----cceeeeeEEEEEEE-CCeEEEEEEEecCCCcC
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSL-----QMAGLNLINKTLMV-QGARIAFSIWDVGGDSR 160 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~~~~~-~~~-----~t~g~~~~~~~~~~-~~~~~~l~i~D~~G~e~ 160 (209)
.....|+|+|.++||||||++++.+.... ... .|.|+..+ ...+ ......+.++||+|-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence 45688999999999999999999987632 211 13333221 1111 12235688999999754
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.00076 Score=57.01 Aligned_cols=34 Identities=6% Similarity=0.186 Sum_probs=29.0
Q ss_pred cCCCcCCccccccccccCcEEEEEEeCCChhhHH
Q 028397 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN 188 (209)
Q Consensus 155 ~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~ 188 (209)
.+||+.++.+|+.||.++|++|+|.|.+|++-++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle 227 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE 227 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH
Confidence 4789999999999999999999999999997654
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.40 E-value=0.0024 Score=57.73 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=50.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh------cCCCC--Cc---cc-----------ceeeeeEEEEEE-------------EC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV------GNEQE--RS---LQ-----------MAGLNLINKTLM-------------VQ 144 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~------~~~~~--~~---~~-----------t~g~~~~~~~~~-------------~~ 144 (209)
...|+++|.+||||||++..+. +.+.. .. .+ ..+++++..... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998 32211 10 00 011222210000 00
Q ss_pred CeEEEEEEEecCCCcCCcc-cccc---c--cccCcEEEEEEeCCChhh
Q 028397 145 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCT 186 (209)
Q Consensus 145 ~~~~~l~i~D~~G~e~~~~-~~~~---~--~~~a~~illvfDit~~~S 186 (209)
...+.+.|+||+|...... +... . +..+|.+++|.|.+....
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~ 228 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA 228 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence 0346789999999764321 1111 0 237899999999987543
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.38 E-value=0.0018 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+++.++|++|+|||||++.+.+-.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999999998643
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0028 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.++++|++|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 223
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.12 E-value=0.0032 Score=48.86 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.++.++|++|+|||||++.+.+-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988753
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0034 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 225
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.88 E-value=0.0046 Score=48.57 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
|+++|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999743
No 226
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.80 E-value=0.0058 Score=48.49 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..--|+++|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 345689999999999999999984
No 227
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.78 E-value=0.0096 Score=53.00 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=43.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHHHHhcC------------------CCC-C---cccceeeeeEEEEEEE---CCeEEEEE
Q 028397 97 DLVSLKISLLGDCQIGKTSFVVKYVGN------------------EQE-R---SLQMAGLNLINKTLMV---QGARIAFS 151 (209)
Q Consensus 97 ~~~~~KIvvlGd~~vGKTSLi~~~~~~------------------~~~-~---~~~t~g~~~~~~~~~~---~~~~~~l~ 151 (209)
+.+..-|.|+|..++|||+|++++++. .|. . ...|.|+-.....+.. ++....+-
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 345677899999999999999999852 333 1 1124465433222211 45678999
Q ss_pred EEecCCCcCC
Q 028397 152 IWDVGGDSRS 161 (209)
Q Consensus 152 i~D~~G~e~~ 161 (209)
+.||.|....
T Consensus 144 llDTeG~~~~ 153 (447)
T 3q5d_A 144 LMDTQGTFDS 153 (447)
T ss_dssp EEEEECCCSS
T ss_pred EEcCCccccc
Confidence 9999997543
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.71 E-value=0.0054 Score=47.39 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
++++|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999974
No 229
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.70 E-value=0.0053 Score=46.91 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 028397 102 KISLLGDCQIGKTSFVVKY 120 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~ 120 (209)
-++++|++|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999954
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.68 E-value=0.0059 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-++++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998753
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.63 E-value=0.0062 Score=48.85 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
--++++|++|+|||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999998754
No 232
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.61 E-value=0.0066 Score=46.56 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-.++++|.+|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999764
No 233
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.55 E-value=0.007 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
--|+++|++|+|||||++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999854
No 234
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.49 E-value=0.0084 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|.+|+|||||++.+.+-
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999974
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.46 E-value=0.0076 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999988753
No 236
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.44 E-value=0.0077 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.++++|++|+|||||++.+.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999998875
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.40 E-value=0.0085 Score=46.88 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|+++|.+|+|||||++.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.27 E-value=0.0097 Score=44.54 Aligned_cols=21 Identities=24% Similarity=0.048 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.21 E-value=0.01 Score=46.61 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
....|.++|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999987753
No 240
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.19 E-value=0.012 Score=43.88 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 028397 101 LKISLLGDCQIGKTSFVVKY 120 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~ 120 (209)
.-|++.|.+|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.16 E-value=0.011 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
..|+++|.+|+||||+++.+.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998754
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.13 E-value=0.012 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.+.++|+.|+|||||++-+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999988654
No 243
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.12 E-value=0.015 Score=45.08 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
....|++.|.+|+||||+.+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 244
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.08 E-value=0.013 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+++.|++|+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 245
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.08 E-value=0.013 Score=44.12 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 246
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.04 E-value=0.014 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
++|++.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.01 E-value=0.015 Score=44.82 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 248
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.00 E-value=0.014 Score=43.98 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 249
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.00 E-value=0.015 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
++|++.|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.00 E-value=0.015 Score=44.25 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.95 E-value=0.014 Score=44.86 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++++|.+|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999874
No 252
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.88 E-value=0.017 Score=46.55 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
-.|+++|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999988
No 253
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.86 E-value=0.016 Score=44.17 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.86 E-value=0.015 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 255
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.85 E-value=0.013 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.++++|++|+|||+|++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 256
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.85 E-value=0.016 Score=46.10 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028397 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~ 121 (209)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.016 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.--|+++|.+|+||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998853
No 258
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.83 E-value=0.044 Score=48.84 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=42.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh------------------cCCCC-C---cccceeeeeEEEEEEE---CCeEEEEEEE
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYV------------------GNEQE-R---SLQMAGLNLINKTLMV---QGARIAFSIW 153 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~------------------~~~~~-~---~~~t~g~~~~~~~~~~---~~~~~~l~i~ 153 (209)
.-.=|.|+|..++|||.|++.++ ...|. . ..-|.|+......+.+ ++....+-+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 34556699999999999999543 23444 1 1226677665433322 6778999999
Q ss_pred ecCCCcCC
Q 028397 154 DVGGDSRS 161 (209)
Q Consensus 154 D~~G~e~~ 161 (209)
||.|....
T Consensus 146 DTEG~~d~ 153 (457)
T 4ido_A 146 DTQGTFDS 153 (457)
T ss_dssp EECCBTCT
T ss_pred eccCCCCc
Confidence 99996543
No 259
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.82 E-value=0.017 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.81 E-value=0.015 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
++.++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998875
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.78 E-value=0.017 Score=43.73 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|++.|.+|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.78 E-value=0.016 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988754
No 263
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.72 E-value=0.017 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
.++++|.+|||||||++.+.+..-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997654
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.70 E-value=0.024 Score=42.84 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998763
No 265
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.64 E-value=0.016 Score=45.40 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
--+.++|++|+|||||++.+...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999863
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.60 E-value=0.02 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-++++|.+|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.59 E-value=0.026 Score=42.90 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|+++|.+|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 268
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.58 E-value=0.018 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 269
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.58 E-value=0.021 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
....||+++|.+|+|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 447999999999999999999864
No 270
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.57 E-value=0.024 Score=43.88 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.57 E-value=0.02 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|.++|..|+|||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 272
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.57 E-value=0.03 Score=43.30 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
..|++.|.+|+||||+.+.+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998886
No 273
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.55 E-value=0.023 Score=45.38 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...-|.+.|..|+|||||++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999988753
No 274
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.53 E-value=0.02 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+|.++|..|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998875
No 275
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.52 E-value=0.026 Score=42.98 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988753
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.50 E-value=0.022 Score=46.30 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998854
No 277
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.44 E-value=0.023 Score=45.08 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
+.|+++|++|+||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.023 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998754
No 279
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.43 E-value=0.021 Score=46.89 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.43 E-value=0.024 Score=43.11 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 281
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.43 E-value=0.052 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988653
No 282
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.42 E-value=0.022 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
++|++.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.42 E-value=0.024 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998754
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.40 E-value=0.024 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998754
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.38 E-value=0.021 Score=43.62 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.38 E-value=0.023 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.37 E-value=0.015 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=15.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
--+.++|++|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999998
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.36 E-value=0.023 Score=44.21 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..-|+++|.+|+||||+.+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999987753
No 289
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.35 E-value=0.025 Score=44.48 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+|.++|.+|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 290
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.35 E-value=0.017 Score=43.33 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-.+++.|++|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988643
No 291
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.32 E-value=0.024 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
--++++|.+|+|||||++.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999998 43
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.32 E-value=0.023 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
=.++++|+.|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999998874
No 293
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.30 E-value=0.024 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988754
No 294
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.28 E-value=0.024 Score=46.41 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 295
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.23 E-value=0.026 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998764
No 296
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.23 E-value=0.028 Score=45.18 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 297
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.22 E-value=0.023 Score=47.52 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNEQ 125 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~~ 125 (209)
-.+.++|++|+|||||++.+.+..-
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3678999999999999999986543
No 298
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.22 E-value=0.029 Score=45.29 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+|++.|.+|+||||+..++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.20 E-value=0.027 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 300
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.19 E-value=0.026 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.18 E-value=0.026 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999988754
No 302
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.18 E-value=0.028 Score=43.94 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999873
No 303
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.16 E-value=0.028 Score=46.30 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 304
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.16 E-value=0.027 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 305
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.14 E-value=0.033 Score=41.61 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.12 E-value=0.029 Score=46.03 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999998753
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.12 E-value=0.031 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...|++.|.+|+||||+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.10 E-value=0.028 Score=47.51 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
=.+.++|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4789999999999999998863
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.09 E-value=0.03 Score=46.31 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 310
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.07 E-value=0.028 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-.+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.07 E-value=0.037 Score=42.99 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
+.|.++|..|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.07 E-value=0.031 Score=43.98 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|+++|.+|+||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.06 E-value=0.023 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|+.++|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 314
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.06 E-value=0.031 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++-+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988754
No 315
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.06 E-value=0.029 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 316
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.05 E-value=0.029 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.98 E-value=0.031 Score=42.28 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
+|+++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998753
No 318
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.95 E-value=0.031 Score=42.88 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
+++.|++|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998874
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.91 E-value=0.031 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998754
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.90 E-value=0.046 Score=42.52 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...|.++|.+|+||||+.+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999764
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.89 E-value=0.031 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998754
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.89 E-value=0.034 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998863
No 323
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.88 E-value=0.032 Score=44.88 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
++++|++|+|||+|++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999875
No 324
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.87 E-value=0.039 Score=43.78 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 325
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.86 E-value=0.026 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998865
No 326
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.86 E-value=0.015 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+.++|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 327
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.85 E-value=0.036 Score=45.67 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998765
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.85 E-value=0.035 Score=42.18 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999998863
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.83 E-value=0.042 Score=42.14 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...|+++|.+|+||||+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988754
No 330
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.82 E-value=0.011 Score=50.05 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-.++++|.+|||||||++.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998654
No 331
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.81 E-value=0.036 Score=43.09 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.80 E-value=0.033 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...-|.++|++|+|||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 356789999999999999998764
No 333
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.77 E-value=0.039 Score=42.20 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 334
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.77 E-value=0.04 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.73 E-value=0.033 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|++.|.+|+||||+...+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 336
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.71 E-value=0.052 Score=42.05 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 337
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.70 E-value=0.054 Score=41.34 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|+++|.+|+||||+.+.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 338
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.70 E-value=0.032 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.69 E-value=0.042 Score=44.39 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+.|.+.|.+|+||||+.+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 340
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.68 E-value=0.013 Score=45.57 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999863
No 341
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.66 E-value=0.04 Score=43.54 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-++++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999863
No 342
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.65 E-value=0.026 Score=42.30 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--++++|++|+|||+|++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998875
No 343
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.63 E-value=0.044 Score=43.69 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|+++|.+|+||||+.+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 344
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.53 E-value=0.044 Score=42.52 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.49 E-value=0.047 Score=42.13 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 346
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.48 E-value=0.041 Score=43.33 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+|+++|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.47 E-value=0.056 Score=40.94 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 348
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.47 E-value=0.042 Score=42.43 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 349
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.47 E-value=0.052 Score=43.51 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=18.8
Q ss_pred eeeEE-EEEcCCCCCHHHHHHHHhc
Q 028397 99 VSLKI-SLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 99 ~~~KI-vvlGd~~vGKTSLi~~~~~ 122 (209)
...|| +++|++|+||+|...++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34454 5689999999999888864
No 350
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.47 E-value=0.041 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-|+++|.+|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998863
No 351
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.45 E-value=0.086 Score=38.79 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
..|++.|++|+|||++++.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999887543
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.45 E-value=0.04 Score=46.35 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
-.+.++|++|+||||++..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999999886
No 353
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.43 E-value=0.044 Score=41.86 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 354
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.41 E-value=0.048 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
...+|++++|.+.+||||+++++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 558999999999999999999875
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.40 E-value=0.046 Score=41.87 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.38 E-value=0.048 Score=40.82 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.37 E-value=0.043 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+.++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988754
No 358
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.33 E-value=0.045 Score=45.15 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
++++|++|+|||+|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999999875
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.32 E-value=0.045 Score=44.03 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|.++|+.|+|||||++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998865
No 360
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.31 E-value=0.04 Score=45.43 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 361
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.26 E-value=0.047 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.--+.++|..|+||||++..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998863
No 362
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.24 E-value=0.047 Score=44.66 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999988753
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.22 E-value=0.035 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999863
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.19 E-value=0.067 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
...|.+.|.+|+|||||++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999998664
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.19 E-value=0.046 Score=42.56 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|.++|.+|+|||||++.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 366
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.19 E-value=0.05 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 367
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.18 E-value=0.059 Score=41.35 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...|.+.|..|+||||+.+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999998764
No 368
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.13 E-value=0.032 Score=47.05 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+.++|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999988864
No 369
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.12 E-value=0.052 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+.++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988653
No 370
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.11 E-value=0.05 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-++|.|+.|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 371
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.06 E-value=0.051 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.--+.++|++|+||||++..+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 372
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.06 E-value=0.05 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998875
No 373
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.05 E-value=0.054 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988653
No 374
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.04 E-value=0.051 Score=46.80 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.++++|+.|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998864
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.02 E-value=0.057 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|++.|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 376
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.01 E-value=0.055 Score=46.71 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999998864
No 377
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.99 E-value=0.054 Score=42.79 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888863
No 378
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.92 E-value=0.058 Score=40.88 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.+++|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753
No 379
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.91 E-value=0.059 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998653
No 380
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.90 E-value=0.058 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999988653
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.88 E-value=0.072 Score=40.38 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|++.|.+|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 382
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.85 E-value=0.051 Score=45.14 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++|.|+.|+|||+|++.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999975
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.85 E-value=0.06 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+.++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999998764
No 384
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.84 E-value=0.06 Score=43.55 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|+++|.+|+||||+...+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998764
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.81 E-value=0.063 Score=40.77 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|++.|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 386
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.81 E-value=0.056 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-.++++|+.|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999853
No 387
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.76 E-value=0.054 Score=45.50 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--+++.|++|+|||+|++.+.+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999875
No 388
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.74 E-value=0.062 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-+++.|++|+|||+|++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 389
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.72 E-value=0.065 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..-|++.|.+|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 390
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.70 E-value=0.06 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.+++.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998743
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.68 E-value=0.063 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.++++|+.|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 392
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.67 E-value=0.066 Score=46.35 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999988754
No 393
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.64 E-value=0.058 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...|.++|..|+|||||++.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.62 E-value=0.076 Score=43.02 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
...|.++|.+|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999887
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.62 E-value=0.082 Score=41.40 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+.|++.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 396
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.60 E-value=0.067 Score=41.85 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.57 E-value=0.061 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-.++++|+.|+|||||++.+.+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999998854
No 398
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.49 E-value=0.068 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--+++.|++|+|||+|++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 399
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.45 E-value=0.068 Score=45.81 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-++.++|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998663
No 400
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.45 E-value=0.067 Score=43.78 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 401
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.41 E-value=0.051 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
.++++|+.|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 402
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.34 E-value=0.055 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..-|++.|..|+||||+++.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988864
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.33 E-value=0.073 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.--+.++|..|+||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45688999999999999998863
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.29 E-value=0.074 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
.+=|.++|++|+|||||++.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999998874
No 405
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.27 E-value=0.076 Score=43.43 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+++.|++|+|||++++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 406
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.27 E-value=0.072 Score=44.42 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3588999999999999998874
No 407
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.24 E-value=0.075 Score=44.89 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+++.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 408
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.21 E-value=0.051 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999988553
No 409
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.19 E-value=0.072 Score=43.80 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
..+++.|++|+|||++++.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999997554
No 410
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.18 E-value=0.074 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 578999999999999998875
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.11 E-value=0.087 Score=43.33 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999985
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.06 E-value=0.079 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.--+.|+|.+|+|||||+..+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45688999999999999998863
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.00 E-value=0.095 Score=39.17 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.|++.|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998864
No 414
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.99 E-value=0.082 Score=46.51 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-++|+|+.|+|||||++.+.+
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 415
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.89 E-value=0.099 Score=41.62 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
...|+++|++|+|||+|...+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999854
No 416
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.87 E-value=0.084 Score=43.78 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-+++.|++|+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567779999999999998874
No 417
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.82 E-value=0.091 Score=42.64 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
...+++.|++|+|||+|+..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998875
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.79 E-value=0.09 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.|+++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.76 E-value=0.068 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-++++|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3678999999999999999865
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.73 E-value=0.09 Score=46.48 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=++.++|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 388999999999999999888653
No 421
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.69 E-value=0.08 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.68 E-value=0.11 Score=41.05 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028397 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~ 121 (209)
=+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999876
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.081 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999988754
No 424
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.63 E-value=0.31 Score=42.48 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..-|+++|.+|+||||+.+++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999874
No 425
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.55 E-value=0.051 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
-+.++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988643
No 426
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.50 E-value=0.083 Score=44.32 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 427
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.43 E-value=0.11 Score=42.77 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999998864
No 428
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.40 E-value=0.1 Score=43.26 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--+++.|++|+|||+|++.+.+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3589999999999999998875
No 429
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.39 E-value=0.042 Score=47.41 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=37.4
Q ss_pred CCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCceEE
Q 028397 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQGPNLMI 208 (209)
Q Consensus 157 G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~~~~~~~iI 208 (209)
.++.|..+...++++++++++|+|++|.. ..|.+++.++..+.++++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~il 101 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLL 101 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEE
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEE
Confidence 46789999999999999999999999863 578888888765555554
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.34 E-value=0.13 Score=41.68 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
.+.|.+.|.+|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999886
No 431
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.34 E-value=0.11 Score=43.42 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988743
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.32 E-value=0.13 Score=40.96 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028397 98 LVSLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 98 ~~~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.....|.++|..|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998864
No 433
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.32 E-value=0.19 Score=40.47 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.-+++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999999999998754
No 434
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.25 E-value=0.1 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.++++|+.|+|||||++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999998753
No 435
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.20 E-value=0.11 Score=43.69 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
+++.|++|+|||++++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 436
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.17 E-value=0.1 Score=43.95 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--+++.|++|+|||+|++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998874
No 437
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.14 E-value=0.14 Score=41.36 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
.+||++.|.+|||||++...+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 6899999999999999966554
No 438
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.13 E-value=0.13 Score=42.33 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
.+.|++.|.+|+||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 439
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.12 E-value=0.11 Score=43.94 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-+++.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 440
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.11 E-value=0.071 Score=39.23 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999998877643
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.09 E-value=0.11 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
++.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999998754
No 442
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.03 E-value=0.15 Score=38.03 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028397 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~ 121 (209)
.+++|+.|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999998865
No 443
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.99 E-value=0.12 Score=43.17 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
-.++++|..|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999875
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.94 E-value=0.13 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
++.++|++|+|||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998754
No 445
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.93 E-value=0.13 Score=43.01 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+++.|++|+|||+|++.+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 446
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.91 E-value=0.14 Score=39.77 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
++|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 447
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.87 E-value=0.68 Score=36.08 Aligned_cols=51 Identities=6% Similarity=0.035 Sum_probs=36.4
Q ss_pred EEEEEEEecCCC-cCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 147 RIAFSIWDVGGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 147 ~~~l~i~D~~G~-e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.+.+.|.|+++. .. ......+..+|.+|++... +..++..+...++.+++.
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKL 118 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhc
Confidence 467889999876 33 2334456789999988874 566778888777777764
No 448
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.81 E-value=0.12 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.++++|++|+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998764
No 449
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.81 E-value=0.58 Score=40.07 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028397 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~ 121 (209)
.+++|+.|+|||||+..++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999998875
No 450
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.79 E-value=0.13 Score=44.02 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
--+.++|++|+|||+|+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999854
No 451
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.70 E-value=0.15 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~~ 124 (209)
=.+.++|+.|+|||||++-+.+-.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988643
No 452
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.64 E-value=0.14 Score=43.11 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999998753
No 453
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.55 E-value=0.14 Score=42.82 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.+++.|++|+|||+|++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999998864
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.54 E-value=0.16 Score=43.48 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-|+|+|+.|+|||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.51 E-value=0.16 Score=43.23 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-|+++|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4788999999999999999743
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.51 E-value=0.16 Score=39.54 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
.-+++.|++|+|||++...+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999998764
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.46 E-value=0.14 Score=44.36 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999998874
No 458
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.46 E-value=0.068 Score=43.13 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
+++.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998874
No 459
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.45 E-value=0.11 Score=41.48 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+++.|++|+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999887764
No 460
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.32 E-value=0.16 Score=42.78 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028397 101 LKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~ 121 (209)
--|+++|.+|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 468899999999999999876
No 461
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.30 E-value=0.16 Score=43.20 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..|+++|.+|+|||+|...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 462
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.26 E-value=0.15 Score=44.61 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028397 102 KISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~ 121 (209)
-+.++|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999886
No 463
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.24 E-value=0.16 Score=43.36 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+++.|++|+|||++++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 464
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=90.21 E-value=0.17 Score=45.58 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-|+|.|.+|+|||+|+..+...
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEcCCCCCHHHHHHHHHhc
Confidence 4789999999999999999754
No 465
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.16 E-value=0.11 Score=42.85 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+++.|++|+|||+|++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998853
No 466
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.07 E-value=0.16 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-+.++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999998864
No 467
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.07 E-value=0.17 Score=43.27 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|++.|++|+|||+|...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3589999999999999998874
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.05 E-value=0.19 Score=40.08 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-|++-|..|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 469
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.03 E-value=0.12 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
++.++|++|+|||||++-+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998754
No 470
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.00 E-value=0.17 Score=41.51 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
+++.|++|+|||++++.+...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.99 E-value=0.18 Score=38.65 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.|.+.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998864
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.91 E-value=0.17 Score=42.32 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-.+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.88 E-value=0.16 Score=45.65 Aligned_cols=19 Identities=26% Similarity=0.523 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028397 103 ISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~ 121 (209)
++++|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 474
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.77 E-value=0.18 Score=42.33 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.74 E-value=0.16 Score=50.94 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
||.++|.+|+|||||++-+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 899999999999999998863
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.74 E-value=0.2 Score=42.44 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-|+++|+.|||||+|...+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478899999999999999974
No 477
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.65 E-value=0.18 Score=42.87 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.-.+++.|++|+|||+|++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999874
No 478
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.64 E-value=0.15 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
++.++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999988743
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.63 E-value=0.2 Score=39.78 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028397 100 SLKISLLGDCQIGKTSFVVKYV 121 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~ 121 (209)
..-|++.|.+|+||||++..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999885
No 480
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.58 E-value=0.14 Score=43.51 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.1
Q ss_pred EEEE--EcCCCCCHHHHHHHHhcC
Q 028397 102 KISL--LGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvv--lGd~~vGKTSLi~~~~~~ 123 (209)
-+++ .|++|+|||+|++.+...
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHH
Confidence 4555 799999999999998753
No 481
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.53 E-value=0.2 Score=38.98 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+.|.+.|..|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 482
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.52 E-value=0.19 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028397 102 KISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+.++|+.|+|||||++-+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 483
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.52 E-value=0.12 Score=43.09 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998864
No 484
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.52 E-value=0.29 Score=49.02 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
++.++|+.|+|||||++-+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTT
T ss_pred EEEEEecCCCcHHHHHHHhcc
Confidence 789999999999999988764
No 485
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.51 E-value=0.19 Score=42.76 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.|++.|++|+|||+|++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998874
No 486
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.44 E-value=0.2 Score=41.05 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028397 103 ISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~~ 123 (209)
+++.|++|+|||+++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999988643
No 487
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.39 E-value=0.2 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
=.+.++|+.|+|||||++-+.+-
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36889999999999999998864
No 488
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.39 E-value=0.2 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..+++.|++|+|||++++.+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988763
No 489
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.34 E-value=0.23 Score=44.44 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028397 101 LKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
-+++++|++|+|||+|++.+..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 37999999999999999988754
No 490
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.31 E-value=0.2 Score=40.93 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028397 103 ISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 103 IvvlGd~~vGKTSLi~~~~~ 122 (209)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 89999999999999988864
No 491
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.30 E-value=0.13 Score=46.84 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
++.++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999987764
No 492
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.29 E-value=0.27 Score=38.28 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028397 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (209)
Q Consensus 99 ~~~KIvvlGd~~vGKTSLi~~~~~~ 123 (209)
..+.|.+.|..|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999988653
No 493
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.27 E-value=0.053 Score=41.72 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=34.5
Q ss_pred EEEEEEEecCCCcCCccccccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 028397 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200 (209)
Q Consensus 147 ~~~l~i~D~~G~e~~~~~~~~~~~~a~~illvfDit~~~Sf~~i~~wl~~i~~~ 200 (209)
.+.+.|.|+++.. .......+..+|.++++...+.. + ..+...++.+++.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEA 124 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHH
Confidence 4778899998765 33444556779999999876544 3 6666666666554
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.23 E-value=0.16 Score=40.83 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028397 100 SLKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 100 ~~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
..-|++.|.+|+||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 495
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.23 E-value=0.2 Score=44.13 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
--+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 496
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.17 E-value=0.21 Score=42.88 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.+++.|++|+|||+|++.+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 497
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.10 E-value=0.21 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028397 101 LKISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 101 ~KIvvlGd~~vGKTSLi~~~~~ 122 (209)
-.+++.|++|+|||+|++.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999998874
No 498
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.09 E-value=0.23 Score=41.56 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
=+++.|.+|+|||+|+.++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378899999999999999874
No 499
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.08 E-value=0.16 Score=46.35 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
++.++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999987764
No 500
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.94 E-value=0.12 Score=43.07 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028397 102 KISLLGDCQIGKTSFVVKYVG 122 (209)
Q Consensus 102 KIvvlGd~~vGKTSLi~~~~~ 122 (209)
.+++.|++|+|||+|++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 399999999999999998874
Done!