BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028399
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Query: 37 IVWAILRPTKPRFILQDATVYVFNV-SNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYA 95
I + LRP + + ++ A+V F + +N + + + F I S NP + + Y + +
Sbjct: 57 ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRIST 116
Query: 96 TYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKI 155
+H+Q + +K P + E + + V N V ++ +NA L ++S G I + I
Sbjct: 117 AHHNQSVAHKNISPFKQRPKNETRIETQLVSHN-VALSKFNARDLRAEKSKGTIEMEVYI 175
Query: 156 DGRVRWKVGTFITGKYHLYVRC-PAYIN 182
RV +K F + + L C P IN
Sbjct: 176 TARVSYKTWIFRSRRRTLKAVCTPVMIN 203
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 19/204 (9%)
Query: 18 RRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISS 77
R L FI +T L +W LR KP+ +Q+ + + ++ +
Sbjct: 12 RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNFMVRC 71
Query: 78 RNPNDRIGIYYDKLDL-YATYHSQQITYKT-------SLPTTYQGHKEINVWSPYVYGNA 129
NPN GIYYD + L ++T ++ +I ++P YQGHK+ +G
Sbjct: 72 DNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKK----KAKKWGQV 127
Query: 130 VPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCPAYINFGD---- 185
P+ + S + L K +VR+K+ + T +Y + V +N GD
Sbjct: 128 KPLNNQTVLRAVLPNGSAVFRLDLKT--QVRFKIVFWKTKRYGVEVGADVEVN-GDGVKA 184
Query: 186 RQAGTAVGNNAVKYQLVQSCSVSV 209
++ G + + + L S +SV
Sbjct: 185 QKKGIKMKKSDSSFPLRSSFPISV 208
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Query: 41 ILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQ 100
++R +F + DA + F++ + N L S + +S RN IGI+YD+ + Y +Q
Sbjct: 1 MVRSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQ 60
Query: 101 QITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNA-VSLTQDQSSGIIPLMFKIDGRV 159
++ +P Y G K + G + + N DQ +G+ + K+
Sbjct: 61 RLGA-VPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINF 119
Query: 160 RWKVGTFITGKYHLYVRC 177
R V +T VRC
Sbjct: 120 RVMVLHLVTWPMKPVVRC 137
>sp|P27022|GLYC_HRSV3 Major surface glycoprotein G OS=Human respiratory syncytial virus A
(strain rsb1734) GN=G PE=3 SV=1
Length = 297
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 15 KIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVT 74
+I I+A I+ LI++ I I A + T I+QDAT + N + P LT + Q+
Sbjct: 40 QITLSILAMIISTSLIIVAIIFIASANHKITSTTTIIQDATNQIKNTT-PTYLTQNPQLG 98
Query: 75 ISSRNPNDRIGIYYDKLD 92
IS NP+D + LD
Sbjct: 99 ISPSNPSDITSLITTILD 116
>sp|Q9ZA11|ALDH_RHORT Aldehyde dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170
/ NCIB 8255) GN=Rru_A0931 PE=3 SV=2
Length = 506
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 109 PTTYQGHKEINVWSPYVYGNAVPVAPY----NAVSLTQDQSSGIIPLMFKIDGRVRWKVG 164
PT ++G+ + ++ ++G V V + A+ L D G+ ++ DG ++ G
Sbjct: 387 PTVFKGNNSMRIFQEEIFGPVVAVTTFKDEDEALHLANDTHYGLGSGVWTRDGNRAFRFG 446
Query: 165 TFI------TGKYHLYVRCPAYINFGD-RQAGTAVGNNAV---KYQLVQSCSVS 208
I T YHLY PA+ FG +Q+G N+ + YQ ++ VS
Sbjct: 447 RGIKAGRVWTNCYHLY---PAHAAFGGYKQSGIGRENHHMMLDHYQQTKNLLVS 497
>sp|P46368|DHA2_CUPNH Acetaldehyde dehydrogenase 2 OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=acoD PE=1 SV=1
Length = 506
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 109 PTTYQGHKEINVWSPYVYGNAVPVAPY----NAVSLTQDQSSGIIPLMFKIDGRVRWKVG 164
PT + GH ++ ++ ++G V V + A+++ D G+ ++ DG +++G
Sbjct: 387 PTVFAGHNKMRIFQEEIFGPVVSVTTFKDEEEALAIANDTLYGLGAGVWTRDGARAFRMG 446
Query: 165 TFI------TGKYHLYVRCPAYINFGD-RQAGTAVGNNAV---KYQLVQSCSVS 208
I T YH Y PA+ FG +Q+G N+ + YQ ++ VS
Sbjct: 447 RGIQAGRVWTNCYHAY---PAHAAFGGYKQSGIGRENHRMMLDHYQQTKNLLVS 497
>sp|Q9RYG9|ALDH_DEIRA Aldehyde dehydrogenase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=aldA PE=3 SV=1
Length = 515
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 109 PTTYQGHKEINVWSPYVYGNAVPVAPY----NAVSLTQDQSSGIIPLMFKIDGRVRWKVG 164
PT ++GH ++ ++ ++G + A + A+ L D G+ ++ D +++G
Sbjct: 396 PTIFKGHNKMRIFQEEIFGPVLAAATFKDEAEALELANDTLYGLGAGLWTRDISRAYRMG 455
Query: 165 TFI------TGKYHLYVRCPAYINFGD-RQAGTAVGNNAV---KYQLVQSCSVS 208
I T YH+Y PA+ FG +Q+G N+ + YQ ++ VS
Sbjct: 456 RGIQAGRVWTNCYHVY---PAHAAFGGYKQSGIGRENHRMMLDHYQQTKNLLVS 506
>sp|Q9RJZ6|ALDH_STRCO Probable aldehyde dehydrogenase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=SCO1174 PE=3 SV=1
Length = 507
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 109 PTTYQGHKEINVWSPYVYGNAVPVAPY----NAVSLTQDQSSGIIPLMFKIDGRVRWKVG 164
PT ++GH + ++ ++G V V + +AV D G+ ++ D ++ G
Sbjct: 388 PTIFEGHNRMRIFQEEIFGPVVSVTSFDDFDDAVKTANDTLYGLGAGVWTRDMNTAYRAG 447
Query: 165 TFI------TGKYHLYVRCPAYINFGD-RQAGTAVGNNAVKYQLVQS-----CSVS 208
I T YH Y PA+ FG +Q+G N+ + + Q CS S
Sbjct: 448 RAIQAGRVWTNCYHAY---PAHAAFGGYKQSGIGRENHKMMLEHYQQTKNILCSYS 500
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,599,195
Number of Sequences: 539616
Number of extensions: 3047325
Number of successful extensions: 8738
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8730
Number of HSP's gapped (non-prelim): 18
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)