Query 028399
Match_columns 209
No_of_seqs 112 out of 835
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 2.3E-36 5E-41 246.7 24.8 183 11-209 31-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 4.1E-13 8.9E-18 96.1 8.8 98 74-177 1-99 (101)
3 smart00769 WHy Water Stress an 98.5 2.2E-06 4.8E-11 61.6 10.5 83 65-154 11-95 (100)
4 PF07092 DUF1356: Protein of u 98.4 8.5E-05 1.8E-09 61.0 18.9 102 19-126 77-180 (238)
5 COG5608 LEA14-like dessication 97.3 0.036 7.9E-07 42.5 14.8 104 45-158 31-135 (161)
6 PF12751 Vac7: Vacuolar segreg 97.2 0.00091 2E-08 58.5 6.9 85 12-103 295-381 (387)
7 PLN03160 uncharacterized prote 94.9 0.55 1.2E-05 38.5 11.0 104 9-120 32-147 (219)
8 PF14155 DUF4307: Domain of un 72.9 9.4 0.0002 27.8 4.9 63 38-110 22-86 (112)
9 TIGR02588 conserved hypothetic 72.8 5.6 0.00012 29.5 3.6 50 27-83 12-63 (122)
10 PF11837 DUF3357: Domain of un 71.1 1.3 2.9E-05 32.0 0.0 26 12-37 23-48 (106)
11 COG1580 FliL Flagellar basal b 66.4 25 0.00054 27.4 6.2 40 3-43 4-43 (159)
12 KOG3950 Gamma/delta sarcoglyca 64.7 26 0.00056 29.3 6.2 23 65-87 104-126 (292)
13 PF12505 DUF3712: Protein of u 61.8 25 0.00054 25.8 5.3 40 54-94 84-124 (125)
14 PRK05529 cell division protein 55.0 12 0.00025 31.4 2.8 44 46-90 58-128 (255)
15 PF04790 Sarcoglycan_1: Sarcog 52.3 1.4E+02 0.0031 25.1 12.4 19 65-83 82-100 (264)
16 COG5353 Uncharacterized protei 51.5 8 0.00017 29.7 1.1 32 14-45 3-34 (161)
17 PF09624 DUF2393: Protein of u 48.8 42 0.0009 25.3 4.8 61 34-103 33-95 (149)
18 PF15012 DUF4519: Domain of un 48.6 20 0.00044 22.8 2.4 13 33-45 44-56 (56)
19 PRK10893 lipopolysaccharide ex 47.7 1.4E+02 0.0031 23.8 8.8 54 43-99 37-90 (192)
20 PF04478 Mid2: Mid2 like cell 47.3 9.8 0.00021 29.4 1.1 24 26-49 59-82 (154)
21 PRK07021 fliL flagellar basal 46.7 59 0.0013 25.1 5.4 19 85-103 77-95 (162)
22 PF10907 DUF2749: Protein of u 44.8 37 0.00081 22.3 3.3 16 30-45 13-28 (66)
23 TIGR03726 strep_RK_lipo putati 43.4 16 0.00035 20.7 1.3 22 12-33 4-25 (34)
24 COG4698 Uncharacterized protei 42.8 13 0.00029 29.5 1.2 46 16-63 10-58 (197)
25 PRK13150 cytochrome c-type bio 42.5 1.6E+02 0.0035 22.9 7.1 15 128-142 131-145 (159)
26 PF06072 Herpes_US9: Alphaherp 41.9 11 0.00025 24.2 0.6 7 12-18 27-33 (60)
27 PRK13183 psbN photosystem II r 41.2 40 0.00088 20.5 2.8 23 23-45 11-33 (46)
28 CHL00020 psbN photosystem II p 39.9 46 0.001 20.0 2.9 23 23-45 8-30 (43)
29 PF07423 DUF1510: Protein of u 39.3 16 0.00034 30.0 1.2 13 12-24 8-20 (217)
30 PF00927 Transglut_C: Transglu 39.0 91 0.002 21.9 5.1 59 66-125 12-74 (107)
31 PF11606 AlcCBM31: Family 31 c 37.0 32 0.0007 23.8 2.2 24 78-101 4-28 (93)
32 PF11906 DUF3426: Protein of u 36.2 1.6E+02 0.0035 21.9 6.3 54 50-104 49-103 (149)
33 PF14927 Neurensin: Neurensin 34.9 34 0.00074 26.1 2.3 21 22-42 48-68 (140)
34 PF05399 EVI2A: Ectropic viral 33.7 29 0.00062 28.3 1.8 28 4-34 119-146 (227)
35 PF03100 CcmE: CcmE; InterPro 32.9 79 0.0017 23.5 4.0 14 75-88 75-88 (131)
36 PF09604 Potass_KdpF: F subuni 32.9 9.2 0.0002 20.2 -0.7 17 30-46 8-24 (25)
37 PF02468 PsbN: Photosystem II 32.2 40 0.00087 20.3 1.8 23 23-45 8-30 (43)
38 KOG3927 Na+/K+ ATPase, beta su 31.0 24 0.00053 30.3 1.1 50 12-62 40-92 (300)
39 PF09307 MHC2-interact: CLIP, 30.9 16 0.00035 26.8 0.0 32 12-44 24-58 (114)
40 PF06092 DUF943: Enterobacteri 30.5 26 0.00057 27.2 1.1 16 29-44 13-28 (157)
41 PRK06531 yajC preprotein trans 29.1 21 0.00046 26.1 0.3 8 38-45 16-23 (113)
42 PRK14759 potassium-transportin 28.0 14 0.00029 20.3 -0.6 18 29-46 11-28 (29)
43 PF04573 SPC22: Signal peptida 27.5 1.2E+02 0.0026 23.9 4.4 11 42-52 32-42 (175)
44 TIGR02223 ftsN cell division p 26.7 1.2E+02 0.0025 26.2 4.5 11 1-11 1-11 (298)
45 PF11770 GAPT: GRB2-binding ad 26.7 94 0.002 24.0 3.4 22 29-50 21-42 (158)
46 PF06024 DUF912: Nucleopolyhed 26.5 97 0.0021 22.0 3.4 21 24-44 68-89 (101)
47 TIGR02115 potass_kdpF K+-trans 26.0 6.7 0.00014 21.0 -2.0 16 30-45 7-22 (26)
48 PRK07718 fliL flagellar basal 26.0 70 0.0015 24.1 2.7 16 87-102 63-78 (142)
49 COG4736 CcoQ Cbb3-type cytochr 25.3 16 0.00035 23.7 -0.8 13 33-45 21-33 (60)
50 PF11395 DUF2873: Protein of u 25.2 17 0.00037 21.1 -0.6 10 33-42 23-32 (43)
51 PF05545 FixQ: Cbb3-type cytoc 24.9 16 0.00034 22.3 -0.8 8 38-45 26-33 (49)
52 PF11322 DUF3124: Protein of u 24.2 1.2E+02 0.0026 22.6 3.6 52 65-121 19-73 (125)
53 PRK14758 hypothetical protein; 24.2 64 0.0014 17.2 1.5 20 21-40 7-26 (27)
54 PF14283 DUF4366: Domain of un 23.5 94 0.002 25.5 3.2 22 28-49 169-190 (218)
55 PF09911 DUF2140: Uncharacteri 22.9 1.2E+02 0.0026 24.1 3.6 29 17-47 3-31 (187)
56 PF15145 DUF4577: Domain of un 22.7 65 0.0014 23.6 1.9 27 18-44 62-88 (128)
57 PF09865 DUF2092: Predicted pe 22.6 4.2E+02 0.0092 21.5 8.8 38 65-103 35-74 (214)
58 cd01324 cbb3_Oxidase_CcoQ Cyto 21.9 29 0.00063 21.3 -0.1 12 35-46 24-35 (48)
59 COG1589 FtsQ Cell division sep 21.6 54 0.0012 27.5 1.5 31 28-58 39-69 (269)
60 PF10856 DUF2678: Protein of u 21.2 1.8E+02 0.0039 21.5 3.9 28 12-39 25-52 (118)
61 PF05170 AsmA: AsmA family; I 21.0 3.9E+02 0.0085 24.9 7.2 68 86-159 468-535 (604)
62 PF15096 G6B: G6B family 20.8 81 0.0018 25.3 2.2 45 2-46 108-153 (224)
63 PF12751 Vac7: Vacuolar segreg 20.6 53 0.0012 29.2 1.3 8 26-33 315-322 (387)
64 PTZ00116 signal peptidase; Pro 20.5 2.2E+02 0.0047 22.8 4.6 19 44-62 36-54 (185)
65 PF01102 Glycophorin_A: Glycop 20.1 22 0.00048 26.4 -1.1 27 27-53 74-101 (122)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=246.69 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=155.2
Q ss_pred CcccceeehhHHHHHHHHHHHHHhheeeEEEEeCCCCEEEEeeeEEEEEeeCC----CCeEeEEEEEEEEEeCCCCeEEE
Q 028399 11 CKRRKIFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSN----PNVLTSSFQVTISSRNPNDRIGI 86 (209)
Q Consensus 11 ~~r~~~~~~~~~~~~~~l~l~gi~~li~~lv~rP~~P~~~v~~~~v~~~~~~~----~~~l~~~l~~~l~v~NpN~~~~i 86 (209)
.+|++|++||++++.+++++++++++++|++||||+|+|+|+++++++|++++ +..+|++++++++++|||. ++|
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~ 109 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF 109 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence 36677777777777667777778888899999999999999999999999864 2468888999999999996 899
Q ss_pred EEeceEEEEEECCeEeeccccccceeecCCceEEEeEEEEEeeeecChhhHHHHHhhhcCCeEEEEEEEEEEEEEEEEEE
Q 028399 87 YYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTF 166 (209)
Q Consensus 87 ~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~l~v~v~~~v~~k~g~~ 166 (209)
+|+++++.++|+|+.+| .+.+|+|+|++++++.+.+++......+.++ .+|.+|.++|.++|+++++.++++++|++
T Consensus 110 ~Y~~~~~~v~Y~g~~vG-~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv~~i 186 (219)
T PLN03160 110 KYSNTTTTIYYGGTVVG-EARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKILKI 186 (219)
T ss_pred EEcCeEEEEEECCEEEE-EEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEEEEE
Confidence 99999999999999999 5999999999999999999876655443332 47889999999999999999999999999
Q ss_pred EEeeEEEEEEeeEEEEecCCCCcccccCccccccccCcceeeC
Q 028399 167 ITGKYHLYVRCPAYINFGDRQAGTAVGNNAVKYQLVQSCSVSV 209 (209)
Q Consensus 167 ~~~~~~~~v~C~l~v~~~~~~~g~~~~~~~~~~~~~~~C~v~~ 209 (209)
.+++++++++|++.+++++. .++ .++|+.++
T Consensus 187 ~k~~v~~~v~C~v~V~~~~~-----------~i~-~~~C~~~~ 217 (219)
T PLN03160 187 IKKHVVVKMNCTMTVNITSQ-----------AIQ-GQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEeEEEEECCCC-----------EEe-ccEecccc
Confidence 88999999999999987321 333 57898764
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.46 E-value=4.1e-13 Score=96.06 Aligned_cols=98 Identities=29% Similarity=0.353 Sum_probs=72.6
Q ss_pred EEEEeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEEEeEEEEEeeeecChhhHHHHHhhhcCCeEEEEE
Q 028399 74 TISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMF 153 (209)
Q Consensus 74 ~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~l~v 153 (209)
+|+++|||. ++++|+++++.++|.|..+|.....|+|+|++++++.+.+.+..+...+ .+.+.++. +|..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 588999997 9999999999999999999944788999999999999888776655443 44566666 66778888
Q ss_pred EEEEEEEEEE-EEEEEeeEEEEEEe
Q 028399 154 KIDGRVRWKV-GTFITGKYHLYVRC 177 (209)
Q Consensus 154 ~v~~~v~~k~-g~~~~~~~~~~v~C 177 (209)
.+++++++++ +.....++.+.++|
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~ 99 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSC 99 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEe
Confidence 8888888884 43322345555555
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.49 E-value=2.2e-06 Score=61.56 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=63.6
Q ss_pred CeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc-ceeecCCceEEEeEEEEEeeeecChhhHHHHHhh
Q 028399 65 NVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP-TTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQD 143 (209)
Q Consensus 65 ~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d 143 (209)
..++.++.+.+.++|||. +++.|++++..++|.|..+| ++..+ ++..++++++.+.+.+.. +.. ....+..+
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~-~g~~~~~~~ipa~~~~~v~v~~~~-~~~----~~~~~~~~ 83 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELG-SGEIPDSGTLPGNGRTVLDVPVTV-NLF----LAEALIWH 83 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEE-EEEcCCCcEECCCCcEEEEEEEEe-ehh----HhHHHHHh
Confidence 458889999999999995 89999999999999999999 57775 799999999998887765 222 22344455
Q ss_pred hcCCe-EEEEEE
Q 028399 144 QSSGI-IPLMFK 154 (209)
Q Consensus 144 ~~~g~-v~l~v~ 154 (209)
+.+|. ++.+++
T Consensus 84 l~~~~~~~y~l~ 95 (100)
T smart00769 84 IANGEEIPYRLD 95 (100)
T ss_pred hccCCCccEEEE
Confidence 55553 444443
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.41 E-value=8.5e-05 Score=61.03 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHhheeeEEEEeCCCCEEEEeeeEEEEEeeCC-CCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEE
Q 028399 19 RIIAGILIFILIVLITILIVWAILRPTKPRFILQDATVYVFNVSN-PNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATY 97 (209)
Q Consensus 19 ~~~~~~~~~l~l~gi~~li~~lv~rP~~P~~~v~~~~v~~~~~~~-~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y 97 (209)
+.++++++-+++.|++++. +=|+...++-.++......++. ...+..++.-.|.+.||| +.++.-.++.+++.|
T Consensus 77 yV~~sV~~CLl~~~L~iFF----LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~ 151 (238)
T PF07092_consen 77 YVFLSVLLCLLLSGLVIFF----LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTNLSIQVLY 151 (238)
T ss_pred EeeHHHHHHHHHHHheEEE----EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEE
Confidence 3333333344444443333 3388666664444444333332 246888999999999999 799999999999999
Q ss_pred CCeEeecccccc-ceeecCCceEEEeEEEE
Q 028399 98 HSQQITYKTSLP-TTYQGHKEINVWSPYVY 126 (209)
Q Consensus 98 ~g~~lg~~~~vp-~f~q~~~~t~~~~~~~~ 126 (209)
....+| ++... .-..+|++.+.+...+.
T Consensus 152 ~~~VVG-~~~~~~~~~I~Prs~~q~~~tV~ 180 (238)
T PF07092_consen 152 MKTVVG-KGKNSNITVIGPRSSKQVNYTVK 180 (238)
T ss_pred EEeEEe-eeEecceEEecccCCceEEEEee
Confidence 999999 46554 34667777776666554
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.25 E-value=0.036 Score=42.52 Aligned_cols=104 Identities=14% Similarity=0.018 Sum_probs=72.1
Q ss_pred CCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEEEeEE
Q 028399 45 TKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPY 124 (209)
Q Consensus 45 ~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~ 124 (209)
+.|.+.--.+..-.... ....+-.++.++|||. +++-...++..++-.|..+|......++..+|++...+.+.
T Consensus 31 ~~p~ve~~ka~wGkvt~-----s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~ 104 (161)
T COG5608 31 KKPGVESMKAKWGKVTN-----SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVP 104 (161)
T ss_pred CCCCceEEEEEEEEEec-----cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEE
Confidence 56777766666655432 4457888999999995 89999999999999999999534456799999999998887
Q ss_pred EEEeeeecChhhHHHHHhhhcCCeE-EEEEEEEEE
Q 028399 125 VYGNAVPVAPYNAVSLTQDQSSGII-PLMFKIDGR 158 (209)
Q Consensus 125 ~~~~~v~l~~~~~~~l~~d~~~g~v-~l~v~v~~~ 158 (209)
+..+.-.+. +.+...+.+|.- +.++++.+.
T Consensus 105 l~~d~~~~k----e~w~~hi~ngErs~Ir~~i~~~ 135 (161)
T COG5608 105 LRLDNSKIK----EWWVTHIENGERSTIRVRIKGV 135 (161)
T ss_pred EEEehHHHH----HHHHHHhhccCcccEEEEEEEE
Confidence 766543332 233434555532 444443333
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.25 E-value=0.00091 Score=58.47 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=52.5
Q ss_pred cccceeehhHHHHHHHHH--HHHHhheeeEEEEeCCCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEe
Q 028399 12 KRRKIFRRIIAGILIFIL--IVLITILIVWAILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYD 89 (209)
Q Consensus 12 ~r~~~~~~~~~~~~~~l~--l~gi~~li~~lv~rP~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~ 89 (209)
+|+.|.|..+|+++.+++ ++|.++..++..-| |--.|+=..|.+.=. +.-..-|++++.+.||| .+.|..+
T Consensus 295 ~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~AttK---pL~~v~v~~I~NVla---S~qELmfdl~V~A~NPn-~~~V~I~ 367 (387)
T PF12751_consen 295 QRSWFSRFASCIYLSILLLLVIGFAIGFVFATTK---PLTDVQVVSIQNVLA---SEQELMFDLTVEAFNPN-WFTVTID 367 (387)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcCc---ccccceEEEeeeeee---ccceEEEeeEEEEECCC-eEEEEec
Confidence 566666665554443322 23333332333344 433444444444333 23566799999999999 6999999
Q ss_pred ceEEEEEECCeEee
Q 028399 90 KLDLYATYHSQQIT 103 (209)
Q Consensus 90 ~~~~~v~Y~g~~lg 103 (209)
+.++.|+-+-..+|
T Consensus 368 d~dldIFAKS~yvg 381 (387)
T PF12751_consen 368 DMDLDIFAKSRYVG 381 (387)
T ss_pred cceeeeEecCCccC
Confidence 99999998877776
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=94.85 E-value=0.55 Score=38.46 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=61.3
Q ss_pred cCCcccceeehhHHHHHHHHHHHHHhheeeEEEEeCC--CCEEEEeeeEEE-------EEeeC--CC-CeEeEEEEEEEE
Q 028399 9 HGCKRRKIFRRIIAGILIFILIVLITILIVWAILRPT--KPRFILQDATVY-------VFNVS--NP-NVLTSSFQVTIS 76 (209)
Q Consensus 9 ~~~~r~~~~~~~~~~~~~~l~l~gi~~li~~lv~rP~--~P~~~v~~~~v~-------~~~~~--~~-~~l~~~l~~~l~ 76 (209)
.++++.+||.|+|.+++++++++++++++++=-=.|+ --.+++.+..+. .++++ .. ..-|.|. +.+.
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 5778889999999998888888788877776667774 344555554432 12211 00 0112233 3344
Q ss_pred EeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEE
Q 028399 77 SRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINV 120 (209)
Q Consensus 77 v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~ 120 (209)
-.| ..+.++|++..+.- ..+. .+..|++.+..-+.+.
T Consensus 111 Y~~--~~~~v~Y~g~~vG~----a~~p-~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 111 YSN--TTTTIYYGGTVVGE----ARTP-PGKAKARRTMRMNVTV 147 (219)
T ss_pred EcC--eEEEEEECCEEEEE----EEcC-CcccCCCCeEEEEEEE
Confidence 433 25889998865432 3344 3556666666666654
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=72.86 E-value=9.4 Score=27.82 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=28.2
Q ss_pred eEEEEe-CCCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeec-cccccc
Q 028399 38 VWAILR-PTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITY-KTSLPT 110 (209)
Q Consensus 38 ~~lv~r-P~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~-~~~vp~ 110 (209)
.|+.+. ...|.++ .+...|++.++..+..+|+++ ++|... .+- .--...|++.++|. +..+|+
T Consensus 22 ~w~~~~~~~~~~v~---~~~~gf~vv~d~~v~v~f~Vt---r~~~~~--a~C--~VrA~~~d~aeVGrreV~vp~ 86 (112)
T PF14155_consen 22 AWFGYSQFGSPPVS---AEVIGFEVVDDSTVEVTFDVT---RDPGRP--AVC--IVRALDYDGAEVGRREVLVPP 86 (112)
T ss_pred hHhhhhhccCCCce---EEEEEEEECCCCEEEEEEEEE---ECCCCC--EEE--EEEEEeCCCCEEEEEEEEECC
Confidence 344444 3445553 444455555444333333333 236532 221 01124577788884 233454
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=72.83 E-value=5.6 Score=29.54 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=30.9
Q ss_pred HHHHHHHhheeeE--EEEeCCCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCe
Q 028399 27 FILIVLITILIVW--AILRPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDR 83 (209)
Q Consensus 27 ~l~l~gi~~li~~--lv~rP~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~ 83 (209)
.+++++++.+++| +.-+++.|.+.+......+- ....+-+-++++|-...
T Consensus 12 ~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCCc
Confidence 3334444444444 45666789998877766542 23347777888997653
No 10
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=71.09 E-value=1.3 Score=32.01 Aligned_cols=26 Identities=19% Similarity=0.398 Sum_probs=0.0
Q ss_pred cccceeehhHHHHHHHHHHHHHhhee
Q 028399 12 KRRKIFRRIIAGILIFILIVLITILI 37 (209)
Q Consensus 12 ~r~~~~~~~~~~~~~~l~l~gi~~li 37 (209)
+|||-.+++..+++.+++++.+++++
T Consensus 23 ~~rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 23 RRRRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------------
T ss_pred CcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 44554566666666666665555554
No 11
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=66.39 E-value=25 Score=27.39 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=22.6
Q ss_pred cccccccCCcccceeehhHHHHHHHHHHHHHhheeeEEEEe
Q 028399 3 EKVCDKHGCKRRKIFRRIIAGILIFILIVLITILIVWAILR 43 (209)
Q Consensus 3 ~~~~~~~~~~r~~~~~~~~~~~~~~l~l~gi~~li~~lv~r 43 (209)
+.+-++....|.+.. .+..+++.++++++..+..+|+..+
T Consensus 4 ~~~~~~~~~~~k~~~-~I~liv~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 4 EEDAGAPAKKKKKSL-WILLIVLIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred hhhcCCCccCCCcee-ehHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445566666666644 3334444455555666667777653
No 12
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=64.74 E-value=26 Score=29.29 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=17.8
Q ss_pred CeEeEEEEEEEEEeCCCCeEEEE
Q 028399 65 NVLTSSFQVTISSRNPNDRIGIY 87 (209)
Q Consensus 65 ~~l~~~l~~~l~v~NpN~~~~i~ 87 (209)
-.+...=++++.++|||..+.=+
T Consensus 104 l~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 104 LYLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred eEEEeccCeeEEccCCCCceeee
Confidence 45777788999999999876433
No 13
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=61.77 E-value=25 Score=25.81 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=26.6
Q ss_pred eEEEEEeeCCCC-eEeEEEEEEEEEeCCCCeEEEEEeceEEE
Q 028399 54 ATVYVFNVSNPN-VLTSSFQVTISSRNPNDRIGIYYDKLDLY 94 (209)
Q Consensus 54 ~~v~~~~~~~~~-~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~ 94 (209)
..+.++++..+. .-..++..++.+.||+ .+++..+++.+.
T Consensus 84 ~~I~~~~v~~~~~~~g~~~~~~~~l~NPS-~~ti~lG~v~~~ 124 (125)
T PF12505_consen 84 FTISDFDVTGGTPADGINLNATVTLPNPS-PLTIDLGNVTLN 124 (125)
T ss_pred ceEeeEEeecCCCCCcEEEEEEEEEcCCC-eEEEEeccEEEe
Confidence 334455543222 3567788889999999 588877776654
No 14
>PRK05529 cell division protein FtsQ; Provisional
Probab=54.99 E-value=12 Score=31.39 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=27.6
Q ss_pred CCEEEEeeeEEEEEeeCC--------------C-------------CeEeEEEEEEEEEeCCCCeEEEEEec
Q 028399 46 KPRFILQDATVYVFNVSN--------------P-------------NVLTSSFQVTISSRNPNDRIGIYYDK 90 (209)
Q Consensus 46 ~P~~~v~~~~v~~~~~~~--------------~-------------~~l~~~l~~~l~v~NpN~~~~i~Y~~ 90 (209)
.|.|.|..+.+++-+.-+ + ..+-.-=+++++-+.|| .+.|+-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~-tl~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPG-TIVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCC-EEEEEEEE
Confidence 489999999997543211 0 11222335667788999 47787744
No 15
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=52.34 E-value=1.4e+02 Score=25.13 Aligned_cols=19 Identities=42% Similarity=0.483 Sum_probs=12.8
Q ss_pred CeEeEEEEEEEEEeCCCCe
Q 028399 65 NVLTSSFQVTISSRNPNDR 83 (209)
Q Consensus 65 ~~l~~~l~~~l~v~NpN~~ 83 (209)
..+..+=++++.++|+|..
T Consensus 82 l~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 82 LVIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEEecCceEEEEecCCCc
Confidence 3455555677888888765
No 16
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.52 E-value=8 Score=29.74 Aligned_cols=32 Identities=31% Similarity=0.594 Sum_probs=21.6
Q ss_pred cceeehhHHHHHHHHHHHHHhheeeEEEEeCC
Q 028399 14 RKIFRRIIAGILIFILIVLITILIVWAILRPT 45 (209)
Q Consensus 14 ~~~~~~~~~~~~~~l~l~gi~~li~~lv~rP~ 45 (209)
.+....+.++++.++.+++.+++.+|.+.+|.
T Consensus 3 kk~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 3 KKHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred ceEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 35565665555556666666788888888884
No 17
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=48.77 E-value=42 Score=25.33 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=38.8
Q ss_pred hheeeEEEEeC--CCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEee
Q 028399 34 TILIVWAILRP--TKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQIT 103 (209)
Q Consensus 34 ~~li~~lv~rP--~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg 103 (209)
+.+++|.++.. +.|..++....- +.. +-.+.+..+++|-.+ ..+..=.+++.+...+...+
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~------~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY------SESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee------ccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccC
Confidence 33444444444 445555554443 332 235778899999995 68888888999988765444
No 18
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=48.55 E-value=20 Score=22.78 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.6
Q ss_pred HhheeeEEEEeCC
Q 028399 33 ITILIVWAILRPT 45 (209)
Q Consensus 33 i~~li~~lv~rP~ 45 (209)
++++++|+..||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 4566788888885
No 19
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=47.68 E-value=1.4e+02 Score=23.75 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=30.4
Q ss_pred eCCCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECC
Q 028399 43 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHS 99 (209)
Q Consensus 43 rP~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g 99 (209)
.++.|.|.+++++...++.+. .+.+.+...=.-+=|+. =...++...+.++-.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G--~l~y~l~a~~~~Hy~~~-~~t~f~~P~l~~y~~~ 90 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG--ALSYKLVAQHVEYYSDQ-AVSWFTQPVLTTFDKN 90 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC--CEEEEEEecceEEcCCC-CCEEEeCCeEEEECCC
Confidence 456799999999998887643 45555444432222442 2234444444444443
No 20
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=47.33 E-value=9.8 Score=29.38 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHHHHhheeeEEEEeCCCCEE
Q 028399 26 IFILIVLITILIVWAILRPTKPRF 49 (209)
Q Consensus 26 ~~l~l~gi~~li~~lv~rP~~P~~ 49 (209)
+..++++++++++|+..|++.-.|
T Consensus 59 Gg~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 59 GGPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred cHHHHHHHHHhheeEEEecccCcc
Confidence 345555677788888899886443
No 21
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=46.72 E-value=59 Score=25.10 Aligned_cols=19 Identities=5% Similarity=-0.165 Sum_probs=13.4
Q ss_pred EEEEeceEEEEEECCeEee
Q 028399 85 GIYYDKLDLYATYHSQQIT 103 (209)
Q Consensus 85 ~i~Y~~~~~~v~Y~g~~lg 103 (209)
.-+|=...+.+.+.+....
T Consensus 77 ~~rylkv~i~L~~~~~~~~ 95 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEATR 95 (162)
T ss_pred CceEEEEEEEEEECCHHHH
Confidence 3678888888888766443
No 22
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=44.77 E-value=37 Score=22.26 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=12.2
Q ss_pred HHHHhheeeEEEEeCC
Q 028399 30 IVLITILIVWAILRPT 45 (209)
Q Consensus 30 l~gi~~li~~lv~rP~ 45 (209)
+.+.+..+.|++++|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4444677889999998
No 23
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=43.43 E-value=16 Score=20.74 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=16.2
Q ss_pred cccceeehhHHHHHHHHHHHHH
Q 028399 12 KRRKIFRRIIAGILIFILIVLI 33 (209)
Q Consensus 12 ~r~~~~~~~~~~~~~~l~l~gi 33 (209)
|+++..+-+|++++...+++.+
T Consensus 4 RKsK~~~tLCGa~Lgt~~~~~~ 25 (34)
T TIGR03726 4 RKSKKYRTLCGAALGTAVTASV 25 (34)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 6778888999988876555443
No 24
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.80 E-value=13 Score=29.46 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=27.8
Q ss_pred eeehhHHHHHHHHHHHHHhheeeEEEEeCCCCEEEEeeeEE---EEEeeCC
Q 028399 16 IFRRIIAGILIFILIVLITILIVWAILRPTKPRFILQDATV---YVFNVSN 63 (209)
Q Consensus 16 ~~~~~~~~~~~~l~l~gi~~li~~lv~rP~~P~~~v~~~~v---~~~~~~~ 63 (209)
.++.+|.+++++..+++ ++++..++.|+.|..++.+++= ..|.+++
T Consensus 10 ~WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 10 YWKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 46666666655554443 5555667889987766666554 3455543
No 25
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=42.53 E-value=1.6e+02 Score=22.90 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=10.4
Q ss_pred eeeecChhhHHHHHh
Q 028399 128 NAVPVAPYNAVSLTQ 142 (209)
Q Consensus 128 ~~v~l~~~~~~~l~~ 142 (209)
++..+++++++.|++
T Consensus 131 dekYmPpEv~~al~~ 145 (159)
T PRK13150 131 DENYTPPEVEKAMQE 145 (159)
T ss_pred CCCCCCHHHHHHHHH
Confidence 446678888777764
No 26
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=41.89 E-value=11 Score=24.20 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=2.7
Q ss_pred cccceee
Q 028399 12 KRRKIFR 18 (209)
Q Consensus 12 ~r~~~~~ 18 (209)
+|+|.|+
T Consensus 27 ~RrRrc~ 33 (60)
T PF06072_consen 27 RRRRRCR 33 (60)
T ss_pred HHHHHHH
Confidence 3344343
No 27
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=41.22 E-value=40 Score=20.52 Aligned_cols=23 Identities=17% Similarity=0.415 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhheeeEEEEeCC
Q 028399 23 GILIFILIVLITILIVWAILRPT 45 (209)
Q Consensus 23 ~~~~~l~l~gi~~li~~lv~rP~ 45 (209)
++.+..+++++...-+|..+.|.
T Consensus 11 ~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 11 AITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHhhheeeeccCCc
Confidence 34456667788888999999983
No 28
>CHL00020 psbN photosystem II protein N
Probab=39.85 E-value=46 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhheeeEEEEeCC
Q 028399 23 GILIFILIVLITILIVWAILRPT 45 (209)
Q Consensus 23 ~~~~~l~l~gi~~li~~lv~rP~ 45 (209)
++.+..+++++...-+|..+.|.
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCCc
Confidence 34456667788889999999983
No 29
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=39.34 E-value=16 Score=29.98 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=5.5
Q ss_pred cccceeehhHHHH
Q 028399 12 KRRKIFRRIIAGI 24 (209)
Q Consensus 12 ~r~~~~~~~~~~~ 24 (209)
+|||--+.|=++|
T Consensus 8 KrRK~N~iLNiaI 20 (217)
T PF07423_consen 8 KRRKTNKILNIAI 20 (217)
T ss_pred HhhhhhhhHHHHH
Confidence 3444444443333
No 30
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=39.04 E-value=91 Score=21.86 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=33.8
Q ss_pred eEeEEEEEEEEEeCCCCeEEEE---EeceEEEEEECCeEeec-cccccceeecCCceEEEeEEE
Q 028399 66 VLTSSFQVTISSRNPNDRIGIY---YDKLDLYATYHSQQITY-KTSLPTTYQGHKEINVWSPYV 125 (209)
Q Consensus 66 ~l~~~l~~~l~v~NpN~~~~i~---Y~~~~~~v~Y~g~~lg~-~~~vp~f~q~~~~t~~~~~~~ 125 (209)
.++-++++.+++.||... .++ ..=....++|.|..... .........+|+++..+...+
T Consensus 12 ~vG~d~~v~v~~~N~~~~-~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSE-PLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS--EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEeCCcC-ccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 455579999999999752 222 12245566888875420 123455666777777666554
No 31
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=37.03 E-value=32 Score=23.82 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=18.3
Q ss_pred eCCCCeEEEEE-eceEEEEEECCeE
Q 028399 78 RNPNDRIGIYY-DKLDLYATYHSQQ 101 (209)
Q Consensus 78 ~NpN~~~~i~Y-~~~~~~v~Y~g~~ 101 (209)
.||+..++++| ++.++++++.+..
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~g 28 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDNG 28 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE---
T ss_pred CCcchhhCeeeecCceEEEEEecCC
Confidence 57888999999 6689999999883
No 32
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=36.18 E-value=1.6e+02 Score=21.91 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=36.6
Q ss_pred EEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEE-ECCeEeec
Q 028399 50 ILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYAT-YHSQQITY 104 (209)
Q Consensus 50 ~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~-Y~g~~lg~ 104 (209)
.++.+++++..+.....-.-.+.++.+++|... ....|-.++++++ -+|+.+..
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEE
Confidence 444555544443321123446888889999995 6899999999998 67777773
No 33
>PF14927 Neurensin: Neurensin
Probab=34.90 E-value=34 Score=26.07 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhheeeEEEE
Q 028399 22 AGILIFILIVLITILIVWAIL 42 (209)
Q Consensus 22 ~~~~~~l~l~gi~~li~~lv~ 42 (209)
.++.++++++|++++++-..+
T Consensus 48 ~i~g~l~Ll~Gi~~l~vgY~v 68 (140)
T PF14927_consen 48 FISGLLLLLLGIVALTVGYLV 68 (140)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 344456667777655444333
No 34
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=33.67 E-value=29 Score=28.32 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=15.0
Q ss_pred ccccccCCcccceeehhHHHHHHHHHHHHHh
Q 028399 4 KVCDKHGCKRRKIFRRIIAGILIFILIVLIT 34 (209)
Q Consensus 4 ~~~~~~~~~r~~~~~~~~~~~~~~l~l~gi~ 34 (209)
+.|+.... +..-.+|.+++++++++..+
T Consensus 119 ~~CEen~~---K~amLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 119 EICEENNN---KMAMLICLIIIAVLFLICTL 146 (227)
T ss_pred hhhhcCcc---chhHHHHHHHHHHHHHHHHH
Confidence 45665542 44555666666665555433
No 35
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=32.93 E-value=79 Score=23.49 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=5.3
Q ss_pred EEEeCCCCeEEEEE
Q 028399 75 ISSRNPNDRIGIYY 88 (209)
Q Consensus 75 l~v~NpN~~~~i~Y 88 (209)
+.+...++.+.+.|
T Consensus 75 F~i~D~~~~i~V~Y 88 (131)
T PF03100_consen 75 FTITDGGKEIPVVY 88 (131)
T ss_dssp EEEE-SS-EEEEEE
T ss_pred EEEEECCcEEEEEE
Confidence 33334444444444
No 36
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=32.87 E-value=9.2 Score=20.22 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=8.9
Q ss_pred HHHHhheeeEEEEeCCC
Q 028399 30 IVLITILIVWAILRPTK 46 (209)
Q Consensus 30 l~gi~~li~~lv~rP~~ 46 (209)
.+++.+-++|..++|++
T Consensus 8 ~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 8 AVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 33344444555677753
No 37
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.19 E-value=40 Score=20.26 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhheeeEEEEeCC
Q 028399 23 GILIFILIVLITILIVWAILRPT 45 (209)
Q Consensus 23 ~~~~~l~l~gi~~li~~lv~rP~ 45 (209)
++.+..+++++...-+|..+.|.
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCCC
Confidence 34445666777888889999873
No 38
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=31.04 E-value=24 Score=30.35 Aligned_cols=50 Identities=8% Similarity=0.209 Sum_probs=25.6
Q ss_pred cccceeehhHHHHHHHHHHHHHhheeeEE---EEeCCCCEEEEeeeEEEEEeeC
Q 028399 12 KRRKIFRRIIAGILIFILIVLITILIVWA---ILRPTKPRFILQDATVYVFNVS 62 (209)
Q Consensus 12 ~r~~~~~~~~~~~~~~l~l~gi~~li~~l---v~rP~~P~~~v~~~~v~~~~~~ 62 (209)
..+++++++..-+++-+++++++++++|. .+-|+.|++. ++..-..+.+.
T Consensus 40 T~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~ 92 (300)
T KOG3927|consen 40 TGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFR 92 (300)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeec
Confidence 33455554333333333344444444444 5889999999 55333344443
No 39
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=30.94 E-value=16 Score=26.78 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred cccceeehhHHHHH---HHHHHHHHhheeeEEEEeC
Q 028399 12 KRRKIFRRIIAGIL---IFILIVLITILIVWAILRP 44 (209)
Q Consensus 12 ~r~~~~~~~~~~~~---~~l~l~gi~~li~~lv~rP 44 (209)
+|++|.|.+.++.+ +.++++| -++.+|++|.=
T Consensus 24 ~~~s~sra~~vagltvLa~LLiAG-Qa~TaYfv~~Q 58 (114)
T PF09307_consen 24 QRGSCSRALKVAGLTVLACLLIAG-QAVTAYFVFQQ 58 (114)
T ss_dssp ------------------------------------
T ss_pred CCCCccchhHHHHHHHHHHHHHHh-HHHHHHHHHHh
Confidence 45556666655433 3333443 35567777774
No 40
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=30.45 E-value=26 Score=27.20 Aligned_cols=16 Identities=25% Similarity=0.791 Sum_probs=10.3
Q ss_pred HHHHHhheeeEEEEeC
Q 028399 29 LIVLITILIVWAILRP 44 (209)
Q Consensus 29 ~l~gi~~li~~lv~rP 44 (209)
+++++++.++|+.+||
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3333333778988998
No 41
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=29.09 E-value=21 Score=26.14 Aligned_cols=8 Identities=13% Similarity=0.409 Sum_probs=5.7
Q ss_pred eEEEEeCC
Q 028399 38 VWAILRPT 45 (209)
Q Consensus 38 ~~lv~rP~ 45 (209)
+|+.+||.
T Consensus 16 ~yf~iRPQ 23 (113)
T PRK06531 16 IFFMQRQQ 23 (113)
T ss_pred HHheechH
Confidence 45679995
No 42
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=28.02 E-value=14 Score=20.29 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=9.5
Q ss_pred HHHHHhheeeEEEEeCCC
Q 028399 29 LIVLITILIVWAILRPTK 46 (209)
Q Consensus 29 ~l~gi~~li~~lv~rP~~ 46 (209)
+.+++.+-+++..+||++
T Consensus 11 va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 11 VSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 333444444555678863
No 43
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=27.54 E-value=1.2e+02 Score=23.88 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=6.0
Q ss_pred EeCCCCEEEEe
Q 028399 42 LRPTKPRFILQ 52 (209)
Q Consensus 42 ~rP~~P~~~v~ 52 (209)
+.|..|..++.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 55655655543
No 44
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=26.73 E-value=1.2e+02 Score=26.18 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=8.1
Q ss_pred CCcccccccCC
Q 028399 1 MSEKVCDKHGC 11 (209)
Q Consensus 1 ~~~~~~~~~~~ 11 (209)
|.++|-...++
T Consensus 1 Maqrdyv~rg~ 11 (298)
T TIGR02223 1 MAQRDYVRRGR 11 (298)
T ss_pred CCccccccccC
Confidence 77777777666
No 45
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=26.66 E-value=94 Score=24.00 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=11.8
Q ss_pred HHHHHhheeeEEEEeCCCCEEE
Q 028399 29 LIVLITILIVWAILRPTKPRFI 50 (209)
Q Consensus 29 ~l~gi~~li~~lv~rP~~P~~~ 50 (209)
+|+...+.++|-.=+...-+|+
T Consensus 21 lLl~cgiGcvwhwkhr~~~~ft 42 (158)
T PF11770_consen 21 LLLLCGIGCVWHWKHRDSTRFT 42 (158)
T ss_pred HHHHHhcceEEEeeccCccccc
Confidence 3444456777876554433443
No 46
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.52 E-value=97 Score=21.99 Aligned_cols=21 Identities=33% Similarity=0.603 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhheeeEEE-EeC
Q 028399 24 ILIFILIVLITILIVWAI-LRP 44 (209)
Q Consensus 24 ~~~~l~l~gi~~li~~lv-~rP 44 (209)
++++++++.++.+|.|++ +|=
T Consensus 68 lls~v~IlVily~IyYFVILRe 89 (101)
T PF06024_consen 68 LLSFVCILVILYAIYYFVILRE 89 (101)
T ss_pred HHHHHHHHHHHhhheEEEEEec
Confidence 333444433444444554 443
No 47
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=26.02 E-value=6.7 Score=20.96 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=8.2
Q ss_pred HHHHhheeeEEEEeCC
Q 028399 30 IVLITILIVWAILRPT 45 (209)
Q Consensus 30 l~gi~~li~~lv~rP~ 45 (209)
.+++.+.++|..+||+
T Consensus 7 ~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 7 AVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHhCHH
Confidence 3333444455557775
No 48
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.96 E-value=70 Score=24.14 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=10.1
Q ss_pred EEeceEEEEEECCeEe
Q 028399 87 YYDKLDLYATYHSQQI 102 (209)
Q Consensus 87 ~Y~~~~~~v~Y~g~~l 102 (209)
+|=..++.+.+++...
T Consensus 63 ~ylk~~i~l~~~~~~~ 78 (142)
T PRK07718 63 NFIRIQFKIETDSKKA 78 (142)
T ss_pred CEEEEEEEEEECCHHH
Confidence 4556677777776543
No 49
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=16 Score=23.65 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=8.4
Q ss_pred HhheeeEEEEeCC
Q 028399 33 ITILIVWAILRPT 45 (209)
Q Consensus 33 i~~li~~lv~rP~ 45 (209)
+.+.++|.++||+
T Consensus 21 ~fiavi~~ayr~~ 33 (60)
T COG4736 21 FFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHhccc
Confidence 3445567788885
No 50
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=25.22 E-value=17 Score=21.08 Aligned_cols=10 Identities=40% Similarity=0.906 Sum_probs=5.1
Q ss_pred HhheeeEEEE
Q 028399 33 ITILIVWAIL 42 (209)
Q Consensus 33 i~~li~~lv~ 42 (209)
+..+++|.++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 3455566543
No 51
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.93 E-value=16 Score=22.28 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=4.6
Q ss_pred eEEEEeCC
Q 028399 38 VWAILRPT 45 (209)
Q Consensus 38 ~~lv~rP~ 45 (209)
++.+++|+
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 33456776
No 52
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=24.24 E-value=1.2e+02 Score=22.60 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=32.1
Q ss_pred CeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECC---eEeeccccccceeecCCceEEE
Q 028399 65 NVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHS---QQITYKTSLPTTYQGHKEINVW 121 (209)
Q Consensus 65 ~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g---~~lg~~~~vp~f~q~~~~t~~~ 121 (209)
.....+|+++|++||.+..-++...+ +-|.| ..+- +---.|.+.+|-.+..+
T Consensus 19 ~~~~~~Lt~tLSiRNtd~~~~i~i~~----v~Yydt~G~lvr-~yl~~Pi~L~Pl~t~~~ 73 (125)
T PF11322_consen 19 KHRPFNLTATLSIRNTDPTDPIYITS----VDYYDTDGKLVR-SYLDKPIYLKPLATTEF 73 (125)
T ss_pred CCceEeEEEEEEEEcCCCCCCEEEEE----EEEECCCCeEhH-HhcCCCeEcCCCceEEE
Confidence 34667899999999998777777654 34433 3333 12224566666555544
No 53
>PRK14758 hypothetical protein; Provisional
Probab=24.16 E-value=64 Score=17.17 Aligned_cols=20 Identities=15% Similarity=0.281 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhheeeEE
Q 028399 21 IAGILIFILIVLITILIVWA 40 (209)
Q Consensus 21 ~~~~~~~l~l~gi~~li~~l 40 (209)
+=+++.++++.++++.-+|+
T Consensus 7 FEliLivlIlCalia~~fy~ 26 (27)
T PRK14758 7 FEFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33455566666666665554
No 54
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=23.51 E-value=94 Score=25.48 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=11.0
Q ss_pred HHHHHHhheeeEEEEeCCCCEE
Q 028399 28 ILIVLITILIVWAILRPTKPRF 49 (209)
Q Consensus 28 l~l~gi~~li~~lv~rP~~P~~ 49 (209)
++++|..++..+-++|||...-
T Consensus 169 v~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 169 VALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHhhcceEEEEEEeccccccc
Confidence 3333333443334788875543
No 55
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=22.91 E-value=1.2e+02 Score=24.12 Aligned_cols=29 Identities=14% Similarity=0.486 Sum_probs=16.7
Q ss_pred eehhHHHHHHHHHHHHHhheeeEEEEeCCCC
Q 028399 17 FRRIIAGILIFILIVLITILIVWAILRPTKP 47 (209)
Q Consensus 17 ~~~~~~~~~~~l~l~gi~~li~~lv~rP~~P 47 (209)
++..+++++++ ++++++.++..++.|..|
T Consensus 3 WK~aF~~Lla~--~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILLAL--NLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHH--HHHHHhheeeEEEccCCC
Confidence 34455554433 333455566778888865
No 56
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.70 E-value=65 Score=23.56 Aligned_cols=27 Identities=11% Similarity=0.387 Sum_probs=17.2
Q ss_pred ehhHHHHHHHHHHHHHhheeeEEEEeC
Q 028399 18 RRIIAGILIFILIVLITILIVWAILRP 44 (209)
Q Consensus 18 ~~~~~~~~~~l~l~gi~~li~~lv~rP 44 (209)
..+.+.++++++.++++.++++++++-
T Consensus 62 lffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 62 LFFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHheeec
Confidence 344455666666666777777777654
No 57
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=22.64 E-value=4.2e+02 Score=21.52 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=31.1
Q ss_pred CeEeEEEEEEEEEeCCCCeEEEEEec--eEEEEEECCeEee
Q 028399 65 NVLTSSFQVTISSRNPNDRIGIYYDK--LDLYATYHSQQIT 103 (209)
Q Consensus 65 ~~l~~~l~~~l~v~NpN~~~~i~Y~~--~~~~v~Y~g~~lg 103 (209)
..+...-+.++.++=|| ++.+.+.. .+..++|.|..+.
T Consensus 35 qklq~~~~~~v~v~RPd-klr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPD-KLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCC-eEEEEEEcCCcceEEEECCCEEE
Confidence 46777788899999999 69999944 5788999998665
No 58
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=21.86 E-value=29 Score=21.25 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=6.2
Q ss_pred heeeEEEEeCCC
Q 028399 35 ILIVWAILRPTK 46 (209)
Q Consensus 35 ~li~~lv~rP~~ 46 (209)
+.+++.+++|+.
T Consensus 24 igiv~wa~~p~~ 35 (48)
T cd01324 24 LGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHhCCCc
Confidence 333344677853
No 59
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=21.59 E-value=54 Score=27.49 Aligned_cols=31 Identities=16% Similarity=0.593 Sum_probs=22.7
Q ss_pred HHHHHHhheeeEEEEeCCCCEEEEeeeEEEE
Q 028399 28 ILIVLITILIVWAILRPTKPRFILQDATVYV 58 (209)
Q Consensus 28 l~l~gi~~li~~lv~rP~~P~~~v~~~~v~~ 58 (209)
++++++.++++|...-++.|.|.+..+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 3334445666777888888999999999875
No 60
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=21.22 E-value=1.8e+02 Score=21.46 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=17.8
Q ss_pred cccceeehhHHHHHHHHHHHHHhheeeE
Q 028399 12 KRRKIFRRIIAGILIFILIVLITILIVW 39 (209)
Q Consensus 12 ~r~~~~~~~~~~~~~~l~l~gi~~li~~ 39 (209)
.|-|..-.+++++..+++++.++..+++
T Consensus 25 ~r~riinliiG~vT~l~VLvtii~afvf 52 (118)
T PF10856_consen 25 ARDRIINLIIGAVTSLFVLVTIISAFVF 52 (118)
T ss_pred cccEEEEeehHHHHHHHHHHHHhheEEe
Confidence 4455677777777777777666555443
No 61
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=20.95 E-value=3.9e+02 Score=24.86 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=33.9
Q ss_pred EEEeceEEEEEECCeEeeccccccceeecCCceEEEeEEEEEeeeecChhhHHHHHhhhcCCeEEEEEEEEEEE
Q 028399 86 IYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRV 159 (209)
Q Consensus 86 i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~~~~~~v~l~~~~~~~l~~d~~~g~v~l~v~v~~~v 159 (209)
+..+++.+.+ |.|..=| ++.+.. ......++....++++++.+-.......+.-.|...+++.+++++
T Consensus 468 l~l~~l~~~l-~~G~~~~-~~~ld~----~~~~~~~~~~~~~~~v~l~~Ll~~~~~~~~l~G~~~~~~~l~g~G 535 (604)
T PF05170_consen 468 LTLDPLSAKL-YGGSLSG-SASLDA----RQDPPQYSLNLNLRGVQLQPLLQDLALPDPLSGTGDLNLDLTGQG 535 (604)
T ss_pred EEEeeeeEec-CCcEEEE-EEEEec----cCCCccEEEeeeeCCcchHHHHhhhccccCceEEEEEEEEEEeCC
Confidence 3444555554 6665544 243332 112234555556666776553221122234567777776666654
No 62
>PF15096 G6B: G6B family
Probab=20.81 E-value=81 Score=25.31 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=25.2
Q ss_pred CcccccccCCcccceeehhHHHHHHHHHHHHHh-heeeEEEEeCCC
Q 028399 2 SEKVCDKHGCKRRKIFRRIIAGILIFILIVLIT-ILIVWAILRPTK 46 (209)
Q Consensus 2 ~~~~~~~~~~~r~~~~~~~~~~~~~~l~l~gi~-~li~~lv~rP~~ 46 (209)
|.++|.+.++.....--.+.+-++.+-+.+|+. +.+.|..-|...
T Consensus 108 D~a~Cr~~gpt~Gs~Ypq~LiplLG~GL~LGLgalG~~ww~rrrsp 153 (224)
T PF15096_consen 108 DRADCRAPGPTHGSVYPQLLIPLLGAGLVLGLGALGVVWWLRRRSP 153 (224)
T ss_pred ccccccCCCCCCcccchhHHHhhhcchhhhccccchheeeeeccCC
Confidence 567899877644444444445555555555553 445665554433
No 63
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=20.59 E-value=53 Score=29.25 Aligned_cols=8 Identities=0% Similarity=0.023 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 028399 26 IFILIVLI 33 (209)
Q Consensus 26 ~~l~l~gi 33 (209)
++.+++|+
T Consensus 315 ~ig~~~gF 322 (387)
T PF12751_consen 315 VIGFAIGF 322 (387)
T ss_pred HHHHHHHh
Confidence 33334443
No 64
>PTZ00116 signal peptidase; Provisional
Probab=20.54 E-value=2.2e+02 Score=22.78 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=10.7
Q ss_pred CCCCEEEEeeeEEEEEeeC
Q 028399 44 PTKPRFILQDATVYVFNVS 62 (209)
Q Consensus 44 P~~P~~~v~~~~v~~~~~~ 62 (209)
++.|...++=..+.++...
T Consensus 36 ~~~~~~~i~v~~V~~~~~~ 54 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYN 54 (185)
T ss_pred CCCceeeEEEeeccccccc
Confidence 3456566655556666543
No 65
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.06 E-value=22 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=9.5
Q ss_pred HHHHHHHhheeeEEEEeC-CCCEEEEee
Q 028399 27 FILIVLITILIVWAILRP-TKPRFILQD 53 (209)
Q Consensus 27 ~l~l~gi~~li~~lv~rP-~~P~~~v~~ 53 (209)
++-++|++++|+|++-|- |.+...++.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 333455556666665433 344444333
Done!