Query 028399
Match_columns 209
No_of_seqs 112 out of 835
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.1 2.1E-05 7.3E-10 61.0 9.7 99 45-155 43-143 (174)
2 1xo8_A AT1G01470; structural g 97.9 1.5E-05 5E-10 60.6 5.1 101 45-157 20-122 (151)
3 3but_A Uncharacterized protein 97.8 0.00028 9.5E-09 52.5 11.3 68 67-135 16-83 (136)
4 2knc_B Integrin beta-3; transm 47.6 7.1 0.00024 25.7 1.3 18 22-39 15-32 (79)
5 2k9j_B Integrin beta-3; transm 22.7 30 0.001 19.8 1.0 17 23-39 15-31 (43)
6 3p5s_A CD38 molecule; cyclic A 20.7 21 0.00071 29.2 0.0 31 17-47 8-38 (278)
7 2lk9_A Bone marrow stromal ant 19.4 25 0.00087 19.1 0.2 6 17-22 3-8 (35)
8 3ljy_A Putative adhesin; struc 18.9 3.2E+02 0.011 21.0 6.8 20 188-207 211-230 (243)
9 2l0d_A Cell surface protein; s 18.9 2.4E+02 0.0081 19.4 7.6 37 69-109 19-55 (114)
10 3p5s_A CD38 molecule; cyclic A 18.2 26 0.00088 28.7 0.0 29 11-39 6-34 (278)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.09 E-value=2.1e-05 Score=61.01 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=75.4
Q ss_pred CCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc-ceeecCCceEEEeE
Q 028399 45 TKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP-TTYQGHKEINVWSP 123 (209)
Q Consensus 45 ~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~f~q~~~~t~~~~~ 123 (209)
+.|++++.++++.+++. ..+.+.+.|+++|||. +++.+..++..+.-.|..++. +..| ++..++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l-----~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~las-G~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTR-----DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIAS-GTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECS-----SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEE-EEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEecccc-----ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEE-EecCCCceECCCCcEEEEE
Confidence 67999999999988765 3478999999999995 899999999999999999994 7665 58889999999988
Q ss_pred EEEEeeeecChhhHHHHHhhhcCC-eEEEEEEE
Q 028399 124 YVYGNAVPVAPYNAVSLTQDQSSG-IIPLMFKI 155 (209)
Q Consensus 124 ~~~~~~v~l~~~~~~~l~~d~~~g-~v~l~v~v 155 (209)
.+.... .....+.+++..+ .++.++++
T Consensus 116 pv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g 143 (174)
T 1yyc_A 116 PVKVAY-----SIAVSLMKDMCTDWDIDYQLDI 143 (174)
T ss_dssp EEEESH-----HHHHHTCCCCCSSEEECEEEEE
T ss_pred EEEEEH-----HHHHHHHHhcCCCCccceEEEE
Confidence 776532 2223334454333 45555444
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.88 E-value=1.5e-05 Score=60.59 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCEEEEeeeEEEEEeeCCCCeEeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc-ceeecCCceEEEeE
Q 028399 45 TKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP-TTYQGHKEINVWSP 123 (209)
Q Consensus 45 ~~P~~~v~~~~v~~~~~~~~~~l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp-~f~q~~~~t~~~~~ 123 (209)
+.|++++.++++.+++. ....+.+.++++|||. +++.+..++..++-.|..+++ +..+ ++..++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~las-G~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGK-GKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEE-EEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEE-EecCCCcEECCCCcEEEEE
Confidence 57899999888876544 4567999999999995 899999999999999999994 6665 58889999998887
Q ss_pred EEEEeeeecChhhHHHHHhhhc-CCeEEEEEEEEE
Q 028399 124 YVYGNAVPVAPYNAVSLTQDQS-SGIIPLMFKIDG 157 (209)
Q Consensus 124 ~~~~~~v~l~~~~~~~l~~d~~-~g~v~l~v~v~~ 157 (209)
.+.... ....++..++. .+.++.++++..
T Consensus 93 pv~v~~-----~~l~~~~~~l~~~~~i~Y~l~g~l 122 (151)
T 1xo8_A 93 PVVVPY-----SILFNLARDVGVDWDIDYELQIGL 122 (151)
T ss_dssp CCCEEH-----HHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred EEEEEH-----HHHHHHHHhcccCCcccEEEEEEE
Confidence 665432 22223333432 345666654433
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.83 E-value=0.00028 Score=52.55 Aligned_cols=68 Identities=6% Similarity=-0.059 Sum_probs=56.0
Q ss_pred EeEEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeeccccccceeecCCceEEEeEEEEEeeeecChh
Q 028399 67 LTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPY 135 (209)
Q Consensus 67 l~~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp~f~q~~~~t~~~~~~~~~~~v~l~~~ 135 (209)
-...+.+.|.++|||. +++.++.++..++..|.++|.......+..++.+++.+.+.+..+...+...
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~ 83 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW 83 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH
Confidence 4567999999999995 8999999999999999999953335789999999888888887775555443
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=47.62 E-value=7.1 Score=25.70 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhheeeE
Q 028399 22 AGILIFILIVLITILIVW 39 (209)
Q Consensus 22 ~~~~~~l~l~gi~~li~~ 39 (209)
+.+++.++++|++++++|
T Consensus 15 ~gvi~gilliGllllliw 32 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666777776666
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=22.72 E-value=30 Score=19.81 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhheeeE
Q 028399 23 GILIFILIVLITILIVW 39 (209)
Q Consensus 23 ~~~~~l~l~gi~~li~~ 39 (209)
.+++.++++|++.+++|
T Consensus 15 gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666777766665
No 6
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=20.71 E-value=21 Score=29.19 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=0.0
Q ss_pred eehhHHHHHHHHHHHHHhheeeEEEEeCCCC
Q 028399 17 FRRIIAGILIFILIVLITILIVWAILRPTKP 47 (209)
Q Consensus 17 ~~~~~~~~~~~l~l~gi~~li~~lv~rP~~P 47 (209)
.|++|+.+++++++++++++++-+.+.|+.+
T Consensus 8 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 38 (278)
T 3p5s_A 8 RKKLCWCVLLFFLVAGITGGAIGIYKWHYSG 38 (278)
T ss_dssp -------------------------------
T ss_pred ceEEeehHHHHHHHHHHHhheeeEEeccCCc
No 7
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=19.40 E-value=25 Score=19.08 Aligned_cols=6 Identities=0% Similarity=0.213 Sum_probs=1.8
Q ss_pred eehhHH
Q 028399 17 FRRIIA 22 (209)
Q Consensus 17 ~~~~~~ 22 (209)
|+...+
T Consensus 3 cKL~lg 8 (35)
T 2lk9_A 3 SKLLLG 8 (35)
T ss_dssp --CHHH
T ss_pred ceeeec
Confidence 444443
No 8
>3ljy_A Putative adhesin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: PGE; 2.41A {Parabacteroides distasonis}
Probab=18.89 E-value=3.2e+02 Score=20.98 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=13.0
Q ss_pred CcccccCccccccccCccee
Q 028399 188 AGTAVGNNAVKYQLVQSCSV 207 (209)
Q Consensus 188 ~g~~~~~~~~~~~~~~~C~v 207 (209)
.++..|++.+.+...|++.+
T Consensus 211 ~~~~~GsG~i~~~G~p~~~~ 230 (243)
T 3ljy_A 211 KANVVGKGNIRYKGPTAVQQ 230 (243)
T ss_dssp EEEEESSCEEEEESSCEEEE
T ss_pred EEEEEEEEEEEEEcCCceee
Confidence 34455667888887777644
No 9
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=18.86 E-value=2.4e+02 Score=19.44 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=25.1
Q ss_pred EEEEEEEEEeCCCCeEEEEEeceEEEEEECCeEeecccccc
Q 028399 69 SSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLP 109 (209)
Q Consensus 69 ~~l~~~l~v~NpN~~~~i~Y~~~~~~v~Y~g~~lg~~~~vp 109 (209)
-...++++++|...... ....+.++..|..++ ...++
T Consensus 19 ~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~-t~~v~ 55 (114)
T 2l0d_A 19 TVNTMTATIENQGNKDS---TSFNVSLLVDGIVVD-TQTVT 55 (114)
T ss_dssp SEEEEEEEEEECSSSCB---CCEEEEEEETTEEEE-EEEES
T ss_pred CeEEEEEEEEECCCCCC---CCEEEEEEECCEEEc-ceecc
Confidence 35678888999875332 446777888888887 35444
No 10
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=18.18 E-value=26 Score=28.66 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CcccceeehhHHHHHHHHHHHHHhheeeE
Q 028399 11 CKRRKIFRRIIAGILIFILIVLITILIVW 39 (209)
Q Consensus 11 ~~r~~~~~~~~~~~~~~l~l~gi~~li~~ 39 (209)
++|++.|.+++.+++++++++.++.+.+|
T Consensus 6 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 34 (278)
T 3p5s_A 6 TPRKKLCWCVLLFFLVAGITGGAIGIYKW 34 (278)
T ss_dssp -----------------------------
T ss_pred cCceEEeehHHHHHHHHHHHhheeeEEec
Done!