BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028400
MVSESDNPEQNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQ
IWVGSLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDIL
PKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM
LVETLLFIIRSSNHDNKSSATASKQKKNQ

High Scoring Gene Products

Symbol, full name Information P value
AT5G52980 protein from Arabidopsis thaliana 7.0e-54
DDB_G0290801
Transmembrane protein 199 		gene from Dictyostelium discoideum 5.1e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028400
        (209 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168372 - symbol:AT5G52980 "AT5G52980" species...   557  7.0e-54   1
DICTYBASE|DDB_G0290801 - symbol:DDB_G0290801 "Transmembra...   115  5.1e-05   1


>TAIR|locus:2168372 [details] [associations]
            symbol:AT5G52980 "AT5G52980" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB018116
            InterPro:IPR021013 Pfam:PF11712 eggNOG:NOG322202 EMBL:BT012520
            EMBL:BT014823 EMBL:AK227424 IPI:IPI00546350 RefSeq:NP_200110.1
            UniGene:At.29582 PaxDb:Q9LVV4 PRIDE:Q9LVV4
            EnsemblPlants:AT5G52980.1 GeneID:835377 KEGG:ath:AT5G52980
            TAIR:At5g52980 HOGENOM:HOG000238917 InParanoid:Q9LVV4 OMA:LFIIRTS
            PhylomeDB:Q9LVV4 ProtClustDB:CLSN2686149 Genevestigator:Q9LVV4
            Uniprot:Q9LVV4
        Length = 222

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 120/201 (59%), Positives = 136/201 (67%)

Query:     6 DNPE-QNSSGLIISNNDSIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIRQIWVG 64
             D P+ +N SGLI+S  + +RSFL  AS D +L  ELR  A +L S N  PYK +R IW G
Sbjct:     2 DQPDPKNGSGLILSATEPLRSFLALASGDRRLSDELRGIASDLRSKNTIPYKLLRAIWTG 61

Query:    65 SLPSIRPDLFRLFSGSEFVFTSPKPREKSXXXXXXXXXXXXXXXXDEYRELVKDILPKSS 124
             S PS RPDL  LFSGS FVFTSPKPREKS                 EY ELVKDI PK  
Sbjct:    62 SDPSTRPDLLGLFSGSNFVFTSPKPREKSEELKLRLVKLREIAERKEYAELVKDITPKKQ 121

Query:   125 ATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVET 184
               EPFSSYKDQLGFGLHV L MFTGYLVGY +FRALF+ + A+SAAGGILGLV  MLVET
Sbjct:   122 VEEPFSSYKDQLGFGLHVGLTMFTGYLVGYASFRALFNRNPALSAAGGILGLVLAMLVET 181

Query:   185 LLFIIRSSNHDNKSSATASKQ 205
             LLFII++S  D   S+ +  Q
Sbjct:   182 LLFIIKTSKDDQIQSSKSFTQ 202


>DICTYBASE|DDB_G0290801 [details] [associations]
            symbol:DDB_G0290801 "Transmembrane protein 199"
            species:44689 "Dictyostelium discoideum" [GO:0044351
            "macropinocytosis" evidence=RCA] dictyBase:DDB_G0290801
            EMBL:AAFI02000171 InterPro:IPR021013 Pfam:PF11712
            RefSeq:XP_635542.1 EnsemblProtists:DDB0189093 GeneID:8627840
            KEGG:ddi:DDB_G0290801 eggNOG:NOG322202 InParanoid:Q54FJ8
            OMA:KITEWRI ProtClustDB:CLSZ2728777 Uniprot:Q54FJ8
        Length = 251

 Score = 115 (45.5 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:   111 EYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVG--YLAFRALFSHSTAMS 168
             +Y +LVK++  K +     SS++ QL   +++++  FT  LVG  ++    L S    + 
Sbjct:   120 QYSKLVKNVAKKETDLNELSSFRSQLSIAVNILVTFFT-LLVGGIFVGHNWLNSQLYGL- 177

Query:   169 AAGGILGLVCGMLVETLLFIIRSS-NHDNKSSATASKQK 206
               G +LG++ G+ VE  LF+IRSS N   K  A  +++K
Sbjct:   178 VCGLVLGII-GVAVEIWLFVIRSSQNQMEKDKAEKTEEK 215


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       193   0.00098  110 3  11 22  0.48    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.66u 0.12s 16.78t   Elapsed:  00:00:01
  Total cpu time:  16.66u 0.12s 16.78t   Elapsed:  00:00:01
  Start:  Mon May 20 16:57:31 2013   End:  Mon May 20 16:57:32 2013

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