BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028400
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1M8G|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Nicotinamide Mononucleotide Adenylyltransferase Mutant
           R11k Complexed With Nad
          Length = 181

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 22  SIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIR--QIWVGSLPSIRPDLFRLFSG 79
           SIR    +    + L + L E  +  S     P + I    +WVG +  + P   R++SG
Sbjct: 45  SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSG 104

Query: 80  SEFV 83
           +  V
Sbjct: 105 NPLV 108


>pdb|1M8J|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Nicotinamide Mononucleotide Adenylyltransferase Mutant
           R136a Complexed With Nad
          Length = 181

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 22  SIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIR--QIWVGSLPSIRPDLFRLFSG 79
           SIR    +    + L + L E  +  S     P + I    +WVG +  + P   R++SG
Sbjct: 45  SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSG 104

Query: 80  SEFV 83
           +  V
Sbjct: 105 NPLV 108


>pdb|1M8F|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Nicotinamide Mononucleotide Adenylyltransferase Mutant
           R11a Complexed With Nad
          Length = 181

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 22  SIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIR--QIWVGSLPSIRPDLFRLFSG 79
           SIR    +    + L + L E  +  S     P + I    +WVG +  + P   R++SG
Sbjct: 45  SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSG 104

Query: 80  SEFV 83
           +  V
Sbjct: 105 NPLV 108


>pdb|1EJ2|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Nicotinamide Mononucleotide Adenylyltransferase With
           Bound Nad+
          Length = 181

 Score = 27.3 bits (59), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 22  SIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIR--QIWVGSLPSIRPDLFRLFSG 79
           SIR    +    + L + L E  +  S     P + I    +WVG +  + P   R++SG
Sbjct: 45  SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSG 104

Query: 80  SEFV 83
           +  V
Sbjct: 105 NPLV 108


>pdb|1HYB|A Chain A, Crystal Structure Of An Active Site Mutant Of
           Methanobacterium Thermoautotrophicum Nicotinamide
           Mononucleotide Adenylyltransferase
          Length = 181

 Score = 26.9 bits (58), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 22  SIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIR--QIWVGSLPSIRPDLFRLFSG 79
           SIR    +    + L + L E  +  S     P + I    +WVG +  + P   R++SG
Sbjct: 45  SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSG 104

Query: 80  SEFV 83
           +  V
Sbjct: 105 NPLV 108


>pdb|1M8K|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Nicotinamide Mononucleotide Adenylyltransferase Mutant
           H19a Complexed With Nad
 pdb|1M8K|B Chain B, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Nicotinamide Mononucleotide Adenylyltransferase Mutant
           H19a Complexed With Nad
 pdb|1M8K|C Chain C, Crystal Structure Of Methanobacterium Thermoautotrophicum
           Nicotinamide Mononucleotide Adenylyltransferase Mutant
           H19a Complexed With Nad
          Length = 181

 Score = 26.9 bits (58), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 22  SIRSFLLSASEDVQLPRELRETALNLSSLNKAPYKSIR--QIWVGSLPSIRPDLFRLFSG 79
           SIR    +    + L + L E  +  S     P + I    +WVG +  + P   R++SG
Sbjct: 45  SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSG 104

Query: 80  SEFV 83
           +  V
Sbjct: 105 NPLV 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,975,999
Number of Sequences: 62578
Number of extensions: 159468
Number of successful extensions: 331
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)