Query 028400
Match_columns 209
No_of_seqs 119 out of 131
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11712 Vma12: Endoplasmic re 100.0 1.3E-33 2.8E-38 227.0 13.0 125 74-198 1-142 (142)
2 TIGR02230 ATPase_gene1 F0F1-AT 95.9 0.21 4.6E-06 38.3 11.0 53 137-191 47-99 (100)
3 COG5336 Uncharacterized protei 95.2 0.34 7.4E-06 37.8 10.1 94 90-194 3-98 (116)
4 PF09527 ATPase_gene1: Putativ 94.9 0.19 4E-06 33.8 7.1 43 137-180 5-47 (55)
5 PF11712 Vma12: Endoplasmic re 90.0 3 6.6E-05 33.3 8.8 94 88-182 12-123 (142)
6 PF11241 DUF3043: Protein of u 87.8 11 0.00025 31.5 11.0 94 93-191 25-125 (170)
7 PF11286 DUF3087: Protein of u 84.9 2.6 5.6E-05 35.1 5.7 48 131-179 10-63 (165)
8 PF06645 SPC12: Microsomal sig 83.8 3.2 6.9E-05 30.1 5.2 23 138-160 11-35 (76)
9 PF14362 DUF4407: Domain of un 82.6 7.1 0.00015 34.6 8.0 47 133-180 13-61 (301)
10 PRK02935 hypothetical protein; 79.2 8.9 0.00019 29.8 6.3 48 144-193 18-65 (110)
11 PRK10457 hypothetical protein; 78.1 7.1 0.00015 28.7 5.4 24 135-158 26-49 (82)
12 PF11151 DUF2929: Protein of u 77.9 14 0.00031 25.2 6.5 38 142-181 7-44 (57)
13 COG2261 Predicted membrane pro 77.8 8.2 0.00018 28.6 5.6 45 134-179 25-69 (82)
14 PF13829 DUF4191: Domain of un 77.4 6.1 0.00013 34.5 5.6 42 137-187 30-71 (224)
15 KOG4473 Uncharacterized membra 76.0 9.5 0.00021 33.4 6.4 46 137-185 194-240 (247)
16 PF13347 MFS_2: MFS/sugar tran 72.3 6.1 0.00013 35.9 4.6 79 110-191 122-200 (428)
17 PF04246 RseC_MucC: Positive r 71.9 13 0.00027 29.2 5.8 33 148-181 80-112 (135)
18 PF11674 DUF3270: Protein of u 70.7 29 0.00063 26.1 7.1 54 101-157 4-61 (90)
19 PF03672 UPF0154: Uncharacteri 70.5 4.7 0.0001 28.5 2.6 21 142-162 3-23 (64)
20 TIGR03510 XapX XapX domain. Th 70.4 11 0.00025 25.2 4.4 37 142-179 2-38 (49)
21 PF11023 DUF2614: Protein of u 67.6 21 0.00046 28.0 6.0 45 145-191 18-62 (114)
22 PF07857 DUF1632: CEO family ( 66.9 7.8 0.00017 34.3 4.0 58 134-195 77-141 (254)
23 PF14184 YrvL: Regulatory prot 66.7 35 0.00075 27.2 7.3 48 136-183 7-57 (132)
24 PF01349 Flavi_NS4B: Flaviviru 63.3 48 0.001 29.5 8.2 79 101-179 133-234 (254)
25 PF03839 Sec62: Translocation 61.2 34 0.00074 29.8 6.8 16 137-152 113-128 (224)
26 PRK01844 hypothetical protein; 56.3 18 0.00039 26.2 3.5 22 141-162 9-30 (72)
27 TIGR02908 CoxD_Bacillus cytoch 56.0 41 0.00088 26.3 5.7 51 131-188 24-76 (110)
28 COG3086 RseC Positive regulato 55.3 55 0.0012 26.9 6.6 32 148-180 87-118 (150)
29 PRK10582 cytochrome o ubiquino 55.0 68 0.0015 24.9 6.8 57 129-191 12-69 (109)
30 PF01034 Syndecan: Syndecan do 54.8 4 8.8E-05 28.9 0.0 19 169-189 15-33 (64)
31 PF10661 EssA: WXG100 protein 53.8 71 0.0015 25.9 7.1 43 93-136 48-91 (145)
32 COG2035 Predicted membrane pro 53.5 52 0.0011 29.6 6.7 64 111-180 34-102 (276)
33 COG2733 Predicted membrane pro 51.9 45 0.00097 31.6 6.3 44 142-189 12-59 (415)
34 PF11833 DUF3353: Protein of u 51.6 35 0.00076 28.9 5.2 39 148-186 124-164 (194)
35 PF09527 ATPase_gene1: Putativ 50.6 66 0.0014 21.2 5.5 51 139-191 3-53 (55)
36 COG3162 Predicted membrane pro 49.9 58 0.0012 25.1 5.6 58 137-196 33-91 (102)
37 PRK00523 hypothetical protein; 49.0 28 0.0006 25.2 3.5 20 143-162 12-31 (72)
38 PF07274 DUF1440: Protein of u 48.3 93 0.002 25.1 6.9 43 137-183 55-97 (135)
39 COG2855 Predicted membrane pro 48.0 35 0.00075 31.6 4.9 53 142-198 99-155 (334)
40 PF06295 DUF1043: Protein of u 47.1 19 0.0004 28.4 2.7 21 142-162 2-22 (128)
41 PF12670 DUF3792: Protein of u 46.7 1.3E+02 0.0028 23.0 7.4 46 131-179 33-78 (116)
42 PRK10845 colicin V production 44.2 1.7E+02 0.0037 23.7 8.1 57 136-192 64-123 (162)
43 PF04971 Lysis_S: Lysis protei 43.9 43 0.00094 24.0 3.8 40 152-193 17-61 (68)
44 TIGR00869 sec62 protein transl 43.9 69 0.0015 28.1 5.9 17 135-151 119-135 (232)
45 PRK10862 SoxR reducing system 43.6 79 0.0017 25.6 5.9 28 152-180 91-118 (154)
46 TIGR00698 conserved hypothetic 43.3 59 0.0013 29.9 5.7 51 142-195 95-149 (335)
47 PF08566 Pam17: Mitochondrial 43.3 74 0.0016 26.7 5.8 21 135-155 39-59 (173)
48 COG2211 MelB Na+/melibiose sym 42.8 63 0.0014 31.1 6.0 62 129-193 150-211 (467)
49 PF01595 DUF21: Domain of unkn 42.6 1.7E+02 0.0037 23.2 9.8 21 139-159 61-81 (183)
50 PF04226 Transgly_assoc: Trans 42.5 42 0.00091 22.0 3.4 14 144-157 3-16 (48)
51 KOG2927 Membrane component of 42.2 41 0.00089 31.4 4.4 21 169-189 224-245 (372)
52 PF00858 ASC: Amiloride-sensit 41.9 25 0.00055 31.7 3.1 21 168-188 415-439 (439)
53 PRK00733 hppA membrane-bound p 41.4 66 0.0014 32.4 6.0 50 129-180 266-316 (666)
54 TIGR03142 cytochro_ccmI cytoch 41.3 1.5E+02 0.0032 22.7 6.9 24 95-118 40-68 (117)
55 PF12072 DUF3552: Domain of un 41.0 28 0.00062 29.3 3.0 24 139-162 3-26 (201)
56 COG5346 Predicted membrane pro 40.9 1E+02 0.0022 24.7 5.9 43 145-193 90-132 (136)
57 PHA02690 hypothetical protein; 40.8 96 0.0021 23.0 5.3 28 145-176 48-75 (90)
58 PHA00736 hypothetical protein 39.0 81 0.0017 22.6 4.6 15 167-181 58-72 (79)
59 KOG4112 Signal peptidase subun 38.9 84 0.0018 24.0 4.9 18 142-159 30-49 (101)
60 PRK04081 hypothetical protein; 38.6 1.4E+02 0.0031 25.7 6.8 78 79-167 71-150 (207)
61 PF14362 DUF4407: Domain of un 38.5 51 0.0011 29.1 4.4 16 169-184 84-99 (301)
62 KOG4812 Golgi-associated prote 38.3 16 0.00034 32.4 1.1 55 136-192 157-212 (262)
63 PF03601 Cons_hypoth698: Conse 37.8 70 0.0015 28.9 5.2 52 142-196 89-144 (305)
64 COG0053 MMT1 Predicted Co/Zn/C 37.6 2E+02 0.0043 25.8 8.1 69 122-190 68-138 (304)
65 PF01102 Glycophorin_A: Glycop 37.6 46 0.001 26.3 3.5 9 185-193 85-93 (122)
66 PF15110 TMEM141: TMEM141 prot 37.3 58 0.0012 24.7 3.8 38 143-180 32-73 (94)
67 PRK10692 hypothetical protein; 37.3 1.8E+02 0.0039 21.9 6.7 55 134-190 4-62 (92)
68 COG3105 Uncharacterized protei 37.0 38 0.00082 27.3 3.0 25 173-199 12-36 (138)
69 PF03672 UPF0154: Uncharacteri 36.3 49 0.0011 23.4 3.1 19 169-187 4-22 (64)
70 TIGR00383 corA magnesium Mg(2+ 36.3 1.2E+02 0.0025 26.7 6.4 25 135-159 256-282 (318)
71 TIGR00267 conserved hypothetic 36.2 1.6E+02 0.0035 24.1 6.8 35 137-172 118-152 (169)
72 TIGR03426 shape_MreD rod shape 35.9 1.9E+02 0.004 22.6 6.9 49 137-189 68-116 (154)
73 PF03030 H_PPase: Inorganic H+ 35.8 49 0.0011 33.4 4.2 53 127-180 287-341 (682)
74 KOG4783 Uncharacterized conser 35.7 2E+02 0.0044 22.0 8.2 24 175-198 72-95 (102)
75 PF01988 VIT1: VIT family; In 35.4 1.8E+02 0.0039 24.5 7.1 23 137-159 162-184 (213)
76 PF07332 DUF1469: Protein of u 35.1 1.9E+02 0.0042 21.7 7.2 7 201-207 107-113 (121)
77 PF06946 Phage_holin_5: Phage 35.0 1E+02 0.0022 23.4 4.8 45 136-184 35-80 (93)
78 PRK09669 putative symporter Ya 34.9 52 0.0011 30.0 4.0 41 137-180 155-195 (444)
79 PF14235 DUF4337: Domain of un 34.8 2.1E+02 0.0045 23.4 7.1 12 137-148 117-128 (157)
80 COG2261 Predicted membrane pro 34.7 98 0.0021 22.9 4.6 39 141-179 2-43 (82)
81 cd02435 CCC1 CCC1. CCC1: This 34.5 1.4E+02 0.0031 26.0 6.5 23 137-159 184-206 (241)
82 PF10550 Toxin_36: Conantokin- 34.4 18 0.00039 18.3 0.5 11 109-119 2-12 (15)
83 COG3125 CyoD Heme/copper-type 34.2 2E+02 0.0044 22.4 6.6 57 130-193 15-73 (111)
84 PF12557 Co_AT_N: Cob(I)alamin 34.1 42 0.00092 19.1 2.1 19 92-110 5-23 (24)
85 cd02432 Nodulin-21_like_1 Nodu 33.8 2E+02 0.0043 24.7 7.2 29 137-166 166-194 (218)
86 PF13974 YebO: YebO-like prote 33.7 35 0.00076 25.2 2.1 21 172-194 4-24 (80)
87 PF11990 DUF3487: Protein of u 33.7 1.5E+02 0.0032 23.3 5.8 36 137-178 33-68 (121)
88 COG0341 SecF Preprotein transl 33.4 1.5E+02 0.0033 26.9 6.7 44 131-179 230-274 (305)
89 COG1814 Uncharacterized membra 33.4 1.9E+02 0.0042 24.7 7.1 30 137-167 173-202 (229)
90 PRK10429 melibiose:sodium symp 33.2 69 0.0015 29.6 4.6 66 111-179 126-191 (473)
91 COG3763 Uncharacterized protei 33.0 66 0.0014 23.2 3.4 20 142-161 10-29 (71)
92 TIGR02901 QoxD cytochrome aa3 32.9 1.6E+02 0.0034 22.2 5.6 53 132-191 6-60 (94)
93 PF02674 Colicin_V: Colicin V 32.9 2.2E+02 0.0049 21.7 8.0 31 167-197 97-128 (146)
94 PF04120 Iron_permease: Low af 32.8 1E+02 0.0022 24.7 4.8 37 145-181 19-55 (132)
95 PF05216 UNC-50: UNC-50 family 32.0 3.1E+02 0.0067 24.1 8.1 22 104-125 33-54 (231)
96 PF06196 DUF997: Protein of un 31.7 2E+02 0.0044 20.9 7.0 38 160-198 39-78 (80)
97 COG4980 GvpP Gas vesicle prote 31.4 42 0.0009 26.4 2.3 12 169-180 12-23 (115)
98 PF15168 TRIQK: Triple QxxK/R 31.4 63 0.0014 23.7 3.1 25 131-155 47-71 (79)
99 TIGR00792 gph sugar (Glycoside 31.3 90 0.002 27.8 4.9 14 166-179 171-184 (437)
100 PRK11677 hypothetical protein; 30.8 48 0.001 26.6 2.7 19 142-160 6-24 (134)
101 PF07818 HCNGP: HCNGP-like pro 30.3 66 0.0014 24.2 3.2 25 84-108 1-25 (96)
102 PF11381 DUF3185: Protein of u 30.3 1.2E+02 0.0026 21.0 4.2 15 167-181 43-57 (59)
103 PF04156 IncA: IncA protein; 30.2 2.5E+02 0.0054 22.8 7.0 7 185-191 57-63 (191)
104 TIGR00859 ENaC sodium channel 30.1 44 0.00096 32.9 2.9 22 169-190 497-522 (595)
105 TIGR00833 actII Transport prot 30.1 1.3E+02 0.0029 31.0 6.4 23 87-109 692-714 (910)
106 PF01891 CbiM: Cobalt uptake s 29.8 2.3E+02 0.005 23.6 6.8 25 136-160 103-127 (205)
107 cd03393 PAP2_like_3 PAP2_like_ 29.0 1.7E+02 0.0036 22.2 5.4 32 152-183 93-125 (125)
108 PF09882 DUF2109: Predicted me 28.9 1.9E+02 0.004 21.3 5.2 50 144-193 2-64 (78)
109 COG3771 Predicted membrane pro 28.3 63 0.0014 24.4 2.7 23 135-160 40-63 (97)
110 COG0255 RpmC Ribosomal protein 28.2 1.7E+02 0.0037 20.8 4.9 44 93-140 13-56 (69)
111 TIGR02847 CyoD cytochrome o ub 28.1 2.6E+02 0.0057 21.0 6.7 55 131-191 3-58 (96)
112 PF10710 DUF2512: Protein of u 28.0 1.9E+02 0.0041 23.2 5.7 15 170-185 90-104 (136)
113 TIGR02586 cas_devS CRISPR-asso 27.9 1E+02 0.0023 26.2 4.3 71 46-120 58-150 (188)
114 TIGR03782 Bac_Flav_CT_J Bacter 27.8 4.6E+02 0.01 24.2 8.7 23 99-121 100-122 (322)
115 PF05808 Podoplanin: Podoplani 27.7 20 0.00044 29.8 0.0 28 169-196 131-160 (162)
116 PF14012 DUF4229: Protein of u 27.6 2.2E+02 0.0048 20.0 6.0 41 149-193 15-55 (69)
117 PF00831 Ribosomal_L29: Riboso 26.8 2E+02 0.0043 19.4 4.9 41 93-137 9-49 (58)
118 COG2181 NarI Nitrate reductase 26.6 56 0.0012 28.6 2.5 54 137-192 50-112 (228)
119 PF06210 DUF1003: Protein of u 26.3 2.6E+02 0.0056 21.5 6.0 38 144-181 7-49 (108)
120 PF06826 Asp-Al_Ex: Predicted 26.2 1.3E+02 0.0029 24.8 4.6 32 146-178 94-125 (169)
121 PRK11909 cobalt transport prot 26.0 3.1E+02 0.0066 23.8 7.0 26 136-161 104-129 (230)
122 TIGR02762 TraL_TIGR type IV co 25.9 1.6E+02 0.0035 21.9 4.7 18 142-159 22-39 (95)
123 PF14023 DUF4239: Protein of u 25.8 1.9E+02 0.0041 23.9 5.6 12 169-180 171-182 (209)
124 PRK10334 mechanosensitive chan 25.6 3.4E+02 0.0074 24.1 7.5 17 168-184 97-113 (286)
125 PF14898 DUF4491: Domain of un 25.5 1.3E+02 0.0028 22.9 4.0 42 142-184 6-54 (94)
126 PF05745 CRPA: Chlamydia 15 kD 25.3 1.4E+02 0.003 24.3 4.4 45 133-178 63-107 (150)
127 PF04956 TrbC: TrbC/VIRB2 fami 25.2 2.7E+02 0.0058 20.1 7.1 34 147-180 57-90 (99)
128 TIGR01937 nqrB NADH:ubiquinone 25.0 3.7E+02 0.0081 25.6 7.8 22 172-193 125-146 (413)
129 PRK09546 zntB zinc transporter 24.9 2E+02 0.0043 25.7 5.9 21 139-159 266-288 (324)
130 PF07178 TraL: TraL protein; 24.8 1.5E+02 0.0033 21.8 4.4 18 142-159 22-39 (95)
131 PRK11085 magnesium/nickel/coba 24.7 2.1E+02 0.0046 25.9 6.1 25 135-159 254-280 (316)
132 KOG0718 Molecular chaperone (D 24.7 4.8E+02 0.01 25.7 8.5 88 21-119 24-122 (546)
133 PHA03231 glycoprotein BALF4; P 24.5 2.1E+02 0.0046 29.7 6.5 13 109-121 639-651 (829)
134 PF04892 VanZ: VanZ like famil 24.4 2.8E+02 0.0061 20.8 5.9 46 136-187 52-97 (133)
135 cd06607 STKc_TAO Catalytic dom 24.3 59 0.0013 27.8 2.3 53 65-119 253-305 (307)
136 PF10112 Halogen_Hydrol: 5-bro 24.2 2.3E+02 0.0049 23.5 5.8 11 170-180 35-45 (199)
137 PRK09509 fieF ferrous iron eff 23.3 4.2E+02 0.0092 23.2 7.6 37 126-162 70-107 (299)
138 COG0598 CorA Mg2+ and Co2+ tra 23.1 1.5E+02 0.0033 26.5 4.8 26 136-161 261-288 (322)
139 cd03391 PAP2_containing_2_like 23.0 1.8E+02 0.0039 23.4 4.8 20 164-183 140-159 (159)
140 PF02466 Tim17: Tim17/Tim22/Ti 22.9 2.4E+02 0.0051 21.3 5.3 9 146-154 88-96 (128)
141 TIGR00012 L29 ribosomal protei 22.8 2.4E+02 0.0052 18.8 5.0 42 93-138 7-48 (55)
142 TIGR01297 CDF cation diffusion 22.7 4.5E+02 0.0098 22.2 7.5 37 126-162 49-86 (268)
143 PRK13707 conjugal transfer pil 22.6 1.3E+02 0.0029 22.8 3.7 23 137-159 23-45 (101)
144 KOG4453 Predicted ER membrane 22.6 2.2E+02 0.0047 25.4 5.4 46 137-184 194-245 (269)
145 PF01544 CorA: CorA-like Mg2+ 22.5 51 0.0011 28.0 1.6 25 136-160 233-259 (292)
146 PRK00306 50S ribosomal protein 22.5 2.7E+02 0.0058 19.2 5.0 43 93-139 11-53 (66)
147 PF03302 VSP: Giardia variant- 22.4 42 0.00092 31.3 1.1 12 147-158 383-394 (397)
148 COG0690 SecE Preprotein transl 22.3 1.6E+02 0.0034 21.0 3.8 30 133-162 39-68 (73)
149 PRK02507 proton extrusion prot 22.2 3.4E+02 0.0075 26.0 7.0 60 93-152 242-313 (422)
150 PF04632 FUSC: Fusaric acid re 22.0 1.6E+02 0.0035 28.4 5.1 21 167-187 130-150 (650)
151 COG3642 Mn2+-dependent serine/ 22.0 1.4E+02 0.0029 25.8 4.0 48 69-117 10-58 (204)
152 COG4062 MtrB Tetrahydromethano 21.9 3.8E+02 0.0083 20.7 8.1 23 94-121 34-56 (108)
153 PF11808 DUF3329: Domain of un 21.8 2.5E+02 0.0055 20.5 5.0 18 141-158 11-28 (90)
154 COG4858 Uncharacterized membra 21.8 2.9E+02 0.0062 23.9 5.8 13 149-161 141-153 (226)
155 PLN02277 H(+) -translocating i 21.7 2.3E+02 0.005 29.0 6.1 13 169-181 353-365 (730)
156 PF14476 Chloroplast_duf: Peta 21.2 3.5E+02 0.0075 24.7 6.5 25 93-117 174-201 (313)
157 PF08165 FerA: FerA (NUC095) d 21.2 84 0.0018 22.0 2.1 47 54-107 8-54 (66)
158 CHL00190 psaM photosystem I su 21.0 1.5E+02 0.0033 17.8 2.9 20 140-159 5-24 (30)
159 PF06781 UPF0233: Uncharacteri 20.9 2.7E+02 0.0059 20.7 5.0 15 167-181 67-81 (87)
160 COG1271 CydA Cytochrome bd-typ 20.9 2.4E+02 0.0052 27.2 5.8 25 96-120 32-56 (457)
161 PF07423 DUF1510: Protein of u 20.8 1.1E+02 0.0024 26.5 3.3 28 134-162 10-37 (217)
162 PF00924 MS_channel: Mechanose 20.6 1.9E+02 0.0041 23.4 4.6 13 168-180 28-40 (206)
163 PF13829 DUF4191: Domain of un 20.6 1.9E+02 0.004 25.3 4.6 20 143-162 40-59 (224)
164 COG1295 Rbn Ribonuclease BN fa 20.4 3.3E+02 0.0071 24.3 6.3 15 145-159 233-247 (303)
165 PF12349 Sterol-sensing: Stero 20.2 4.5E+02 0.0097 20.9 6.6 60 133-193 3-62 (153)
166 PF12072 DUF3552: Domain of un 20.1 97 0.0021 26.0 2.7 19 143-161 3-21 (201)
167 PRK03557 zinc transporter ZitB 20.1 6.1E+02 0.013 22.5 8.0 37 126-162 78-115 (312)
168 PRK10535 macrolide transporter 20.0 2.7E+02 0.006 27.5 6.3 30 168-198 614-643 (648)
No 1
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=100.00 E-value=1.3e-33 Score=226.99 Aligned_cols=125 Identities=26% Similarity=0.460 Sum_probs=107.2
Q ss_pred hhhcCCCeEEecCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----------C-----CCcccchhhhHH
Q 028400 74 FRLFSGSEFVFTSPKPREK-SEELKARLRQLAERAERDEYRELVKDILPKSS----------A-----TEPFSSYKDQLG 137 (209)
Q Consensus 74 ~~LL~gs~i~~p~p~~~~~-spEl~ArlekLr~~~eereY~~Mtk~v~~~~~----------~-----~~~~~~~k~ql~ 137 (209)
|+||+||+||+|+|+++|+ ||||+|||||||+++||++|++||+|+++... . ...++++++|++
T Consensus 1 ~~Ll~gs~v~~p~~~~~~~~s~E~~a~le~Lr~~~ee~eY~~mv~~~~~~~~~~~~~~~~~~~~~~t~~~~~k~~~~qls 80 (142)
T PF11712_consen 1 HELLRGSKVYFPPPPPKPRPSPELKARLERLRAEQEEREYQRMVRNVDPSQSFSQTPAFGSDEPEDTPAQELKSVKRQLS 80 (142)
T ss_pred CccccCCeEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcCcHHHHHHHHHHHHH
Confidence 7999999999999988887 99999999999999999999999999965221 1 244789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 028400 138 FGLHVVLIMFTGYLVGYLAFRALF-SHSTAMSAAGGILGLVCGMLVETLLFIIRSSNHDNKS 198 (209)
Q Consensus 138 ~v~n~lvtvfa~F~~gy~~~~~~~-~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~~~~~~ 198 (209)
+|+||++||+++|++||++++++| +.+...|++.+++|+++.+++|+++|+++.++.|..+
T Consensus 81 ~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~e~ak 142 (142)
T PF11712_consen 81 TVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKVEEAK 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999999999 7788888665555555555689999999999887643
No 2
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=95.90 E-value=0.21 Score=38.27 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRS 191 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~ 191 (209)
.++..|++.++.|.+.|+|+=+. |+..+.+-++++++|+++|+. -+|++|-|.
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD~~-~~t~~~~tl~~lllGv~~G~~-n~w~wi~re 99 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLDRH-YPSPFSWTLTMLIVGVVIGCL-NAWHWVSRE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence 57788888888888888888776 554665668889999999974 567776653
No 3
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=0.34 Score=37.82 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCC-CcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHH
Q 028400 90 REKSEELKARLRQLAERAERDEYRELVKDILPK-SSAT-EPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAM 167 (209)
Q Consensus 90 ~~~spEl~ArlekLr~~~eereY~~Mtk~v~~~-~~~~-~~~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~ 167 (209)
..|++++++|..+|.+....|. ++.... +... +..+++.+.+..-.-||-.+.-|-.+||+.=+| |+-+|
T Consensus 3 ~~rdd~ld~r~~~l~~dlaar~-----kd~~~~~~~~~a~s~k~~~~a~klssefIsGilVGa~iG~llD~~-agTsP-- 74 (116)
T COG5336 3 GKRDDSLDKRNTELLADLAARI-----KDAAEGAEKSSAESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF-AGTSP-- 74 (116)
T ss_pred CCccchHHHHHHHHHHHHHHHh-----hhhccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCc--
Confidence 3467888888888877776532 233222 1111 223444455566666777666777788887665 55344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028400 168 SAAGGILGLVCGMLVETLLFIIRSSNH 194 (209)
Q Consensus 168 ~~~~~i~glv~~l~~E~~lfiiR~~~~ 194 (209)
.|+|+++++||.+- ++-|.|....
T Consensus 75 --wglIv~lllGf~AG-~lnv~Rsag~ 98 (116)
T COG5336 75 --WGLIVFLLLGFGAG-VLNVLRSAGK 98 (116)
T ss_pred --HHHHHHHHHHHHHH-HHHHHHHhcc
Confidence 45777777777644 3455565433
No 4
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=94.94 E-value=0.19 Score=33.79 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM 180 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l 180 (209)
..+++++++++.++..||++-++. +..|.+.+.++++|++.|+
T Consensus 5 ~lg~~~~~~i~~g~~~G~~lD~~~-~t~p~~~~~g~llG~~~g~ 47 (55)
T PF09527_consen 5 QLGFTMAAPILVGFFLGYWLDKWF-GTSPWFTLIGLLLGIAAGF 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHH
Confidence 458888899999999999998884 4357666788888888875
No 5
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=89.97 E-value=3 Score=33.27 Aligned_cols=94 Identities=18% Similarity=0.106 Sum_probs=50.5
Q ss_pred CCCCCCHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc-----------cchhhhHHHH---HHHHH-HHHHHHH
Q 028400 88 KPREKSEE-LKARLRQLAERAERDEYRELVKDILPKSSATEPF-----------SSYKDQLGFG---LHVVL-IMFTGYL 151 (209)
Q Consensus 88 ~~~~~spE-l~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~-----------~~~k~ql~~v---~n~lv-tvfa~F~ 151 (209)
+|+|+-|+ =.+..+++.+...+.|-++--+=+.+-....... .+...++.-+ +-+++ .+++.|+
T Consensus 12 p~~~~~~~~s~E~~a~le~Lr~~~ee~eY~~mv~~~~~~~~~~~~~~~~~~~~~~t~~~~~k~~~~qls~v~Nilvsv~~ 91 (142)
T PF11712_consen 12 PPPPPKPRPSPELKARLERLRAEQEEREYQRMVRNVDPSQSFSQTPAFGSDEPEDTPAQELKSVKRQLSTVFNILVSVFA 91 (142)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777 5566777777777777776665555433322221 1122333322 22344 3334444
Q ss_pred HHHHhhhhhcccch-HHH-HHHHHHHHHHHHHH
Q 028400 152 VGYLAFRALFSHST-AMS-AAGGILGLVCGMLV 182 (209)
Q Consensus 152 ~gy~~~~~~~~~~~-~~~-~~~~i~glv~~l~~ 182 (209)
++++ +-|+..... .+. ..+++||+++|+++
T Consensus 92 ~~~~-~~~~~~~~~~~~~~~~Rvllgl~~al~v 123 (142)
T PF11712_consen 92 VFFA-GWYWAGYSFGGWSFPYRVLLGLFGALLV 123 (142)
T ss_pred HHHH-HHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 4444 444443233 233 88999999999874
No 6
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=87.85 E-value=11 Score=31.45 Aligned_cols=94 Identities=9% Similarity=0.110 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCCCcccchhhhH----HHHHHHHH-HHHHHHHHHHHhhhhhcccch
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILP--KSSATEPFSSYKDQL----GFGLHVVL-IMFTGYLVGYLAFRALFSHST 165 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~--~~~~~~~~~~~k~ql----~~v~n~lv-tvfa~F~~gy~~~~~~~~~~~ 165 (209)
..|.+++-..=++++.+++|++|...... +..+.++..-|-+++ ..+.++++ .++..++++++.. .+ ..
T Consensus 25 rKeak~~~R~~~r~~r~~~r~aM~~GDeryLp~RDrGP~Rr~vRD~VDsR~~i~e~fmP~alv~lv~~~v~~---~~-~~ 100 (170)
T PF11241_consen 25 RKEAKKRAREARRERRARQREAMMTGDERYLPPRDRGPVRRYVRDYVDSRRNIGEFFMPVALVLLVLSFVVP---SP-QV 100 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCcccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHcc---cH-HH
Confidence 34444444444555666788889766532 233344444432222 33444444 3333333333300 00 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400 166 AMSAAGGILGLVCGMLVETLLFIIRS 191 (209)
Q Consensus 166 ~~~~~~~i~glv~~l~~E~~lfiiR~ 191 (209)
...++-++.++++.+++|.+ ++-|.
T Consensus 101 ~~~~~~~~~~~~~~~iid~~-~l~r~ 125 (170)
T PF11241_consen 101 QLYVTLAMYVLLLLVIIDGV-ILGRR 125 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 11244455566666777876 44443
No 7
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=84.86 E-value=2.6 Score=35.10 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=26.1
Q ss_pred chhhhHHHHHHHHHHHHHHH--HHHHHhhhhhccc----chHHHHHHHHHHHHHH
Q 028400 131 SYKDQLGFGLHVVLIMFTGY--LVGYLAFRALFSH----STAMSAAGGILGLVCG 179 (209)
Q Consensus 131 ~~k~ql~~v~n~lvtvfa~F--~~gy~~~~~~~~~----~~~~~~~~~i~glv~~ 179 (209)
.||+++-.+.=.++..++.+ +||..+ -++||. |..|+++|+|+|+++.
T Consensus 10 ~YRk~~n~v~~~~v~~lai~sl~~s~ll-I~lFg~~~~~nf~~NllGVil~~~~~ 63 (165)
T PF11286_consen 10 RYRKHLNRVIVACVASLAILSLAFSQLL-IALFGGESGGNFHWNLLGVILGLLLT 63 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCceeeeHHHHHHHHHHH
Confidence 46777644433334333322 222222 233664 4446799999998875
No 8
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=83.84 E-value=3.2 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=14.8
Q ss_pred HHHHHHHHHHH--HHHHHHHhhhhh
Q 028400 138 FGLHVVLIMFT--GYLVGYLAFRAL 160 (209)
Q Consensus 138 ~v~n~lvtvfa--~F~~gy~~~~~~ 160 (209)
-..+.++++++ +|++||+..++-
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~ 35 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444 888999887763
No 9
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=82.65 E-value=7.1 Score=34.61 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHhhhhhcccchHHH-HHHHHHHHHHHH
Q 028400 133 KDQLGFGLHVVL-IMFTGYLVGYLAFRALFSHSTAMS-AAGGILGLVCGM 180 (209)
Q Consensus 133 k~ql~~v~n~lv-tvfa~F~~gy~~~~~~~~~~~~~~-~~~~i~glv~~l 180 (209)
.+..++|.=|++ .++++|.+||++..+ |+.+.... +.|++.|+++..
T Consensus 13 ~k~~~~G~~vl~ta~la~~s~~~a~~~~-~~~~~~~ai~~glvwgl~I~~ 61 (301)
T PF14362_consen 13 NKYAGIGAAVLFTALLAGLSGGYALYTV-FGGPVWAAIPFGLVWGLVIFN 61 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHH
Confidence 456778888777 577888888888776 54232222 444455555544
No 10
>PRK02935 hypothetical protein; Provisional
Probab=79.18 E-value=8.9 Score=29.79 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028400 144 LIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSN 193 (209)
Q Consensus 144 vtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~ 193 (209)
.-||.||++-|.| ..|..++.......++|.+.-++--.+||.|=..+
T Consensus 18 ~lvfiG~~vMy~G--iff~~~~~~m~ifm~~G~l~~l~S~vvYFwiGmlS 65 (110)
T PRK02935 18 SLVFIGFIVMYLG--IFFRESIIIMTIFMLLGFLAVIASTVVYFWIGMLS 65 (110)
T ss_pred HHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3577888888888 44555666667788888888776666788764433
No 11
>PRK10457 hypothetical protein; Provisional
Probab=78.08 E-value=7.1 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.276 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 028400 135 QLGFGLHVVLIMFTGYLVGYLAFR 158 (209)
Q Consensus 135 ql~~v~n~lvtvfa~F~~gy~~~~ 158 (209)
..+...|+++.++.+|+-+|.+..
T Consensus 26 ~~G~~~tiilGiiGA~iGg~l~~~ 49 (82)
T PRK10457 26 GGGFFMTIILGIVGAVVGGWISTF 49 (82)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999988887654
No 12
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=77.85 E-value=14 Score=25.24 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHH
Q 028400 142 VVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGML 181 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~ 181 (209)
++-++.-++..||.++...-. +.....++|+|+++|++
T Consensus 7 ~fWs~il~~vvgyI~ssL~~~--~~n~~~~~Ii~vi~~i~ 44 (57)
T PF11151_consen 7 FFWSFILGEVVGYIGSSLTGV--TYNFTTAAIIAVIFGII 44 (57)
T ss_pred hHHHHHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHHH
Confidence 344677788899999876533 11236677778777765
No 13
>COG2261 Predicted membrane protein [Function unknown]
Probab=77.76 E-value=8.2 Score=28.62 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Q 028400 134 DQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCG 179 (209)
Q Consensus 134 ~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~ 179 (209)
.+.+...|+++.++.+|+.+|..+.+=++. +.......+.+.+.+
T Consensus 25 ~~~G~~~nIilGIVGA~vg~~l~~~~g~~~-~~~~~~~~i~avIGA 69 (82)
T COG2261 25 GGGGIFMNIILGIVGAFVGGWLLGALGFGG-PGGNIASFIVAVIGA 69 (82)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHH
Confidence 467889999999999999888888765442 333444344333333
No 14
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=77.45 E-value=6.1 Score=34.47 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLF 187 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lf 187 (209)
.+..-|+.+++.+++.|++.+..+|. +|+|+.+|+++.++.|
T Consensus 30 ~ml~a~l~~~~v~v~ig~l~~~~~~~---------~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 30 LMLGAFLGPIAVFVLIGLLFGSWWYW---------LIIGILLGLLAAMIVL 71 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHH---------HHHHHHHHHHHHHHHH
Confidence 34444556666677777776644332 4444444444444444
No 15
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=76.00 E-value=9.5 Score=33.38 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHH-HHHHHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMS-AAGGILGLVCGMLVETL 185 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~-~~~~i~glv~~l~~E~~ 185 (209)
..+.-+++++|+-|.|||.+..+ +..+..+ ...+++|=-++|+ .+|
T Consensus 194 ~~v~~vv~~~~aL~~fG~~ga~l--g~ak~vrs~~r~vv~G~lAma-atf 240 (247)
T KOG4473|consen 194 RIVVSVVATTFALFMFGYVGAHL--GKAKVVRSSVRVVVGGWLAMA-ATF 240 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHHH-HHH
Confidence 55666788999999999999874 3344433 4444444434443 344
No 16
>PF13347 MFS_2: MFS/sugar transport protein
Probab=72.32 E-value=6.1 Score=35.89 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=38.3
Q ss_pred HHHHHhhccCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 028400 110 DEYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFII 189 (209)
Q Consensus 110 reY~~Mtk~v~~~~~~~~~~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfii 189 (209)
=-|+.|..+..+..+++..+.+++.-.+.+.+++++++.+....+++...- ...++....++|+++.+..=..++.+
T Consensus 122 i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~---~~~~~~~~~v~~iv~~v~~~i~~~~~ 198 (428)
T PF13347_consen 122 IPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT---SNGYRWMALVLAIVGLVFFLITFFFV 198 (428)
T ss_pred CchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc---chHHHHHHHHHHHHHHHHhhhhhhee
Confidence 445566656554333334455555444555555555555554444333210 01455555555555544333445667
Q ss_pred hc
Q 028400 190 RS 191 (209)
Q Consensus 190 R~ 191 (209)
|.
T Consensus 199 ke 200 (428)
T PF13347_consen 199 KE 200 (428)
T ss_pred ee
Confidence 76
No 17
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=71.94 E-value=13 Score=29.16 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHH
Q 028400 148 TGYLVGYLAFRALFSHSTAMSAAGGILGLVCGML 181 (209)
Q Consensus 148 a~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~ 181 (209)
.+|++|++++.+++. +..+.++++++|++++.+
T Consensus 80 l~li~g~~l~~~~~~-~e~~~~l~~l~~l~~~~~ 112 (135)
T PF04246_consen 80 LALIAGAVLGSYLGG-SELWAILGGLLGLALGFL 112 (135)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 467777777777776 455667777777777753
No 18
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=70.68 E-value=29 Score=26.11 Aligned_cols=54 Identities=30% Similarity=0.327 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCC--CCcccchh-hhHHHHHHHHH-HHHHHHHHHHHhh
Q 028400 101 RQLAERAERDEYRELVKDILPKSSA--TEPFSSYK-DQLGFGLHVVL-IMFTGYLVGYLAF 157 (209)
Q Consensus 101 ekLr~~~eereY~~Mtk~v~~~~~~--~~~~~~~k-~ql~~v~n~lv-tvfa~F~~gy~~~ 157 (209)
.|++.-+|+.+|++ +-.++-++ +..-.+-| +.|.+-+||-+ ++++.+.+.-+++
T Consensus 4 r~~~~~~ee~~~e~---~~~~~yQe~q~~~~~~~kL~ELlFF~nIA~FcI~tvlfsFvfLs 61 (90)
T PF11674_consen 4 RKLQDYEEEQEYEE---QQTPKYQEYQPENQSSAKLKELLFFANIAFFCIFTVLFSFVFLS 61 (90)
T ss_pred chhhhhhhhhhHHH---hcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667778887 22222111 11111112 46788888765 6666544433433
No 19
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=70.45 E-value=4.7 Score=28.54 Aligned_cols=21 Identities=19% Similarity=0.623 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcc
Q 028400 142 VVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~~ 162 (209)
++++++.|++.|||++++.|.
T Consensus 3 iilali~G~~~Gff~ar~~~~ 23 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYME 23 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777776653
No 20
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=70.35 E-value=11 Score=25.18 Aligned_cols=37 Identities=30% Similarity=0.305 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Q 028400 142 VVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCG 179 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~ 179 (209)
++++.++||++|..-+-.=.+ +|+-..++|++|++..
T Consensus 2 ~llsl~~G~~vG~~~~~l~vp-~PAPP~laGl~gi~gm 38 (49)
T TIGR03510 2 YLLSLGAGLLVGALYSLLKVP-SPAPPVLAGLVGLLGM 38 (49)
T ss_pred cHHHHHHHHHHHHHHHHhCCC-CCCCchHHHHHHHHHH
Confidence 456677777776654433343 6665566666655543
No 21
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=67.60 E-value=21 Score=28.00 Aligned_cols=45 Identities=24% Similarity=0.427 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400 145 IMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRS 191 (209)
Q Consensus 145 tvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~ 191 (209)
-+|.|++.-|.| ..|..++...+...++|++..+..-.+||-|=.
T Consensus 18 lif~g~~vmy~g--i~f~~~~~im~ifmllG~L~~l~S~~VYfwIGm 62 (114)
T PF11023_consen 18 LIFIGMIVMYIG--IFFKASPIIMVIFMLLGLLAILASTAVYFWIGM 62 (114)
T ss_pred HHHHHHHHHhhh--hhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355666666654 345556656677788887776655566676543
No 22
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=66.90 E-value=7.8 Score=34.29 Aligned_cols=58 Identities=24% Similarity=0.472 Sum_probs=30.0
Q ss_pred hhHHHHHHHHH----HHHHHHHH---HHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 028400 134 DQLGFGLHVVL----IMFTGYLV---GYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSNHD 195 (209)
Q Consensus 134 ~ql~~v~n~lv----tvfa~F~~---gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~~~ 195 (209)
+.++.++-+++ .+.+||+. |+|+.+.--+.++.++..|++++++.+. +|+.||....+
T Consensus 77 ~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~----~f~fik~~~~~ 141 (254)
T PF07857_consen 77 KTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGI----IFSFIKSEEKE 141 (254)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHH----heeeecCCCCC
Confidence 34566666665 34455553 3333322222344455666666665553 34557877743
No 23
>PF14184 YrvL: Regulatory protein YrvL
Probab=66.69 E-value=35 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchH---HHHHHHHHHHHHHHHHH
Q 028400 136 LGFGLHVVLIMFTGYLVGYLAFRALFSHSTA---MSAAGGILGLVCGMLVE 183 (209)
Q Consensus 136 l~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~---~~~~~~i~glv~~l~~E 183 (209)
...++=++..+++++.+|+.|.-.++|-... .-.+-.++..++|+..|
T Consensus 7 ~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e 57 (132)
T PF14184_consen 7 FIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFE 57 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHH
Confidence 3445556668889999999999888773322 22444444444455444
No 24
>PF01349 Flavi_NS4B: Flavivirus non-structural protein NS4B; InterPro: IPR001528 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4B protein is small and poorly conserved among the Flaviviruses. NS4B contains multiple hydrophobic potential membrane spanning regions []. NS4B may form membrane components of the viral replication complex and could be involved in membrane localisation of NS3 and NS5 (see IPR000208 from INTERPRO) [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=63.29 E-value=48 Score=29.48 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhccC--CC--CCCCC---CcccchhhhHHHHHHHHHHHHHHHH---------HH---HHhhhhhc
Q 028400 101 RQLAERAERDEYRELVKDI--LP--KSSAT---EPFSSYKDQLGFGLHVVLIMFTGYL---------VG---YLAFRALF 161 (209)
Q Consensus 101 ekLr~~~eereY~~Mtk~v--~~--~~~~~---~~~~~~k~ql~~v~n~lvtvfa~F~---------~g---y~~~~~~~ 161 (209)
+++-++.+.|-|+-|.||. ++ -.|.+ ..-..|-|+++.++=+++.+++.++ +| -.+...+.
T Consensus 133 A~~~r~Aqkr~aagi~KNp~VDG~~~~di~~~~~~~p~~EKKlg~vlli~la~~sv~l~r~~~a~~Ea~~L~saa~~~L~ 212 (254)
T PF01349_consen 133 AEATRRAQKRTAAGIMKNPVVDGIVTTDIPEGEAMPPLYEKKLGQVLLIALALASVVLNRSAWAVLEAGVLGSAALGTLW 212 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCccCCeeccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHh
Confidence 4556678889999999994 44 11211 1235677888777777776654433 23 23333333
Q ss_pred ccc--hHHH--HHHHHHHHHHH
Q 028400 162 SHS--TAMS--AAGGILGLVCG 179 (209)
Q Consensus 162 ~~~--~~~~--~~~~i~glv~~ 179 (209)
+.+ ..|+ +++++||++-|
T Consensus 213 eg~~~~~Wn~~~A~gl~~l~RG 234 (254)
T PF01349_consen 213 EGNASTFWNMPVAVGLCGLMRG 234 (254)
T ss_pred cCCCCCcccchHHHHHHHhhcc
Confidence 322 2233 77888887763
No 25
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=61.17 E-value=34 Score=29.79 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLV 152 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~ 152 (209)
.+++-++++++++.+|
T Consensus 113 l~~~~~~~~v~a~~lF 128 (224)
T PF03839_consen 113 LIGALLLVGVIAICLF 128 (224)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444455555554443
No 26
>PRK01844 hypothetical protein; Provisional
Probab=56.32 E-value=18 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcc
Q 028400 141 HVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 141 n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
-++++++.|++.|||+++..|.
T Consensus 9 l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666788888888877653
No 27
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=55.99 E-value=41 Score=26.27 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=26.0
Q ss_pred chhhhH-HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHH-HHHHHHHHHHHH
Q 028400 131 SYKDQL-GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGL-VCGMLVETLLFI 188 (209)
Q Consensus 131 ~~k~ql-~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~gl-v~~l~~E~~lfi 188 (209)
+.|+++ ++++-+++|.++.+++.+ . .++... ....|+++ ++=+++..+||+
T Consensus 24 ~~k~yviGFiLSiiLT~I~F~~V~~---~-~l~~~~---~~~~I~~lAvvQi~VqL~yFL 76 (110)
T TIGR02908 24 EMKKQIVTFALMIFLTLIAFFAVML---D-EIDKWF---VIPFILLLAAVQVAFQLYYFM 76 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh---c-cCChhH---HHHHHHHHHHHHHHHHHHHhe
Confidence 345553 777777777776555543 1 233222 22222222 223367888774
No 28
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=55.29 E-value=55 Score=26.86 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhhhcccchHHHHHHHHHHHHHHH
Q 028400 148 TGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM 180 (209)
Q Consensus 148 a~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l 180 (209)
-+|+.+++.++++|. +..+++.++++|.+.|.
T Consensus 87 ~~l~v~~~La~~L~~-~e~~~~~~~~lg~~l~f 118 (150)
T COG3086 87 VGLFLGAILAQYLFF-SELIVIFGAFLGLALGF 118 (150)
T ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Confidence 467778888999997 67677777777776664
No 29
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=54.97 E-value=68 Score=24.86 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=31.0
Q ss_pred ccchhhhH-HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400 129 FSSYKDQL-GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRS 191 (209)
Q Consensus 129 ~~~~k~ql-~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~ 191 (209)
-.+.|+++ ++++-+++|.++.+++.+- .++... .....++| +++-+++..+||+==+
T Consensus 12 hgs~k~yviGFiLSliLT~i~F~lv~~~----~~~~~~-~~~~i~~l-A~vQi~VqL~~FLHl~ 69 (109)
T PRK10582 12 HGSVKTYMTGFILSIILTVIPFWMVMTG----AASPAV-ILGTILAM-AVVQILVHLVCFLHMN 69 (109)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHc----cCChhH-HHHHHHHH-HHHHHHHHHHHHhccc
Confidence 34667664 7777777777766655442 233222 12222333 3345578888885433
No 30
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=54.82 E-value=4 Score=28.86 Aligned_cols=19 Identities=47% Similarity=1.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028400 169 AAGGILGLVCGMLVETLLFII 189 (209)
Q Consensus 169 ~~~~i~glv~~l~~E~~lfii 189 (209)
++|+++|++++++ +++|+|
T Consensus 15 IaG~Vvgll~ail--LIlf~i 33 (64)
T PF01034_consen 15 IAGGVVGLLFAIL--LILFLI 33 (64)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHH--HHHHHH
Confidence 3344455555543 334444
No 31
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=53.80 E-value=71 Score=25.86 Aligned_cols=43 Identities=16% Similarity=0.472 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCCCcccchhhhH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPK-SSATEPFSSYKDQL 136 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~-~~~~~~~~~~k~ql 136 (209)
++|......+. .+.|+++|++.-.+.-.. .........++.+|
T Consensus 48 ~de~~k~I~k~-kk~Ek~~~~~~k~~LF~~~~~~~~~v~~~k~~L 91 (145)
T PF10661_consen 48 TDETEKKIKKK-KKAEKEKYEKIKNSLFTNKVKSDNTVKETKDSL 91 (145)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHhCcCcccccchHHHHHHHh
Confidence 55666666664 455667799998887442 22223455556555
No 32
>COG2035 Predicted membrane protein [Function unknown]
Probab=53.49 E-value=52 Score=29.65 Aligned_cols=64 Identities=25% Similarity=0.327 Sum_probs=33.7
Q ss_pred HHHHhhccCCCCCCCCCcccchhhhH----HHHHHHHHHHHH-HHHHHHHhhhhhcccchHHHHHHHHHHHHHHH
Q 028400 111 EYRELVKDILPKSSATEPFSSYKDQL----GFGLHVVLIMFT-GYLVGYLAFRALFSHSTAMSAAGGILGLVCGM 180 (209)
Q Consensus 111 eY~~Mtk~v~~~~~~~~~~~~~k~ql----~~v~n~lvtvfa-~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l 180 (209)
-|++|+..++.-.+.. ..++++ ..+.-+++.+++ +..+-|+..+| +.-..+..+|+|+|.|.-+
T Consensus 34 IYerlI~~i~~~~~~~----~~~~~~~fLi~l~~G~~~~i~~~a~ii~~ll~~y--p~~t~~fF~GlI~~sVp~l 102 (276)
T COG2035 34 IYERLIEAIAGIFKLD----EFKRNVLFLIPLGIGMLLGIFLFAKIIEYLLENY--PVPTLAFFAGLILGSVPSL 102 (276)
T ss_pred HHHHHHHHHhhhhhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH
Confidence 5999999887632221 234444 444455555554 55555555553 2112233566666665543
No 33
>COG2733 Predicted membrane protein [Function unknown]
Probab=51.86 E-value=45 Score=31.61 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=23.5
Q ss_pred HHHH-HHHHHHHHHHhhhhhcccchHHH-HHHHHH--HHHHHHHHHHHHHHh
Q 028400 142 VVLI-MFTGYLVGYLAFRALFSHSTAMS-AAGGIL--GLVCGMLVETLLFII 189 (209)
Q Consensus 142 ~lvt-vfa~F~~gy~~~~~~~~~~~~~~-~~~~i~--glv~~l~~E~~lfii 189 (209)
++.+ +.+.|+++|++..+.-+ | +|. .++.+| |+|.|+ ..|+-++
T Consensus 12 ~iA~~lL~i~~~~f~l~~~~~n-n-~w~g~v~a~aEAAmVGgL--ADWFAVt 59 (415)
T COG2733 12 VIATGLLLIAAGVFILCRFFEN-N-AWVGFVGAIAEAAMVGGL--ADWFAVT 59 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHhhH--HHHHHHH
Confidence 4444 44567777777776433 4 555 455554 444454 3564443
No 34
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=51.64 E-value=35 Score=28.93 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhh--cccchHHHHHHHHHHHHHHHHHHHHH
Q 028400 148 TGYLVGYLAFRAL--FSHSTAMSAAGGILGLVCGMLVETLL 186 (209)
Q Consensus 148 a~F~~gy~~~~~~--~~~~~~~~~~~~i~glv~~l~~E~~l 186 (209)
+.++|.||.-+.- |+....+-+.++++|+++|-+++.++
T Consensus 124 ~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l 164 (194)
T PF11833_consen 124 GLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWL 164 (194)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556677777652 33233334567778888877777664
No 35
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=50.57 E-value=66 Score=21.17 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400 139 GLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRS 191 (209)
Q Consensus 139 v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~ 191 (209)
..++-++++++.+.|++++.++=. -....-...++|+++|+.+-. +-++|.
T Consensus 3 ~~~lg~~~~~~i~~g~~~G~~lD~-~~~t~p~~~~~g~llG~~~g~-~~~~~~ 53 (55)
T PF09527_consen 3 ASQLGFTMAAPILVGFFLGYWLDK-WFGTSPWFTLIGLLLGIAAGF-YNVYRL 53 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677888888899988887543 333347889999999987655 455664
No 36
>COG3162 Predicted membrane protein [Function unknown]
Probab=49.90 E-value=58 Score=25.09 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCcc
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSS-NHDN 196 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~-~~~~ 196 (209)
.+++=|...+.++|.-+|.+... ++. ...++.-..+|.++.-++=+..++.|.+ +.|.
T Consensus 33 flv~Y~~filLiaf~~~~l~tp~-~~~-~Vt~Gip~gvg~fv~tfVlt~IYv~rAn~~fDr 91 (102)
T COG3162 33 FLVVYFGFILLIAFAPGWLATPL-FGA-SVTRGIPFGVGVFVMTFVLTGIYVRRANGEFDR 91 (102)
T ss_pred HHHHHHHHHHHHHhhHHHhcCcc-cCC-ceehhHhHHHHHHHHHHHHHHHHhhHhhccchH
Confidence 45555666677788888777765 442 2223333334444433344555667776 4443
No 37
>PRK00523 hypothetical protein; Provisional
Probab=49.03 E-value=28 Score=25.23 Aligned_cols=20 Identities=20% Similarity=0.697 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhhhhcc
Q 028400 143 VLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 143 lvtvfa~F~~gy~~~~~~~~ 162 (209)
++.++.|++.|||+++..|.
T Consensus 12 i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455677778888776654
No 38
>PF07274 DUF1440: Protein of unknown function (DUF1440); InterPro: IPR009898 This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.
Probab=48.30 E-value=93 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVE 183 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E 183 (209)
+++.|+.++++ |++.|......++.-. ..-|++.|+++-+++-
T Consensus 55 ~~~vH~~FSi~--fa~~Y~~~ae~~p~i~--l~~G~~fGi~~~i~~H 97 (135)
T PF07274_consen 55 SFIVHFGFSIV--FAVAYCVLAEYWPKIK--LWQGAAFGIVVWIAFH 97 (135)
T ss_pred hhhhhHHHHHH--HHHHHHHHHHHCCccc--hhhhHHHHHHHHHHHH
Confidence 67899888655 4455555444455222 2446667776654433
No 39
>COG2855 Predicted membrane protein [Function unknown]
Probab=47.97 E-value=35 Score=31.55 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 028400 142 VVLIMFTGYLVGYLAFRALFSHSTAMS----AAGGILGLVCGMLVETLLFIIRSSNHDNKS 198 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~~~~~~~~----~~~~i~glv~~l~~E~~lfiiR~~~~~~~~ 198 (209)
++.++.++|.++||.++ +|+-+.-.. .-..|||+-..+++|-. ++..+.|-..
T Consensus 99 ~~~~l~~t~~~~~~lg~-~lgld~~~a~Lia~GssICGasAiaA~~pv---ika~~~eva~ 155 (334)
T COG2855 99 IAITLSSTFLFAYFLGK-LLGLDKKLALLIAAGSSICGASAIAATAPV---IKAEEEEVAV 155 (334)
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHccchhhHHHHHHHhCCc---CCCCccccce
Confidence 44467789999999999 565344332 22568888777777753 6665555433
No 40
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=47.10 E-value=19 Score=28.40 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcc
Q 028400 142 VVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~~ 162 (209)
++++++.|+++||+++++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 467788888888888887654
No 41
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=46.74 E-value=1.3e+02 Score=23.01 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=27.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Q 028400 131 SYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCG 179 (209)
Q Consensus 131 ~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~ 179 (209)
++.++....+.+++++++.|..|++.++..=...- .-|+++|++..
T Consensus 33 ~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~---l~G~~~Gl~y~ 78 (116)
T PF12670_consen 33 SLSESILPWLVVIIYILSVFIGGFYAGRKAGSKGW---LHGLLVGLLYF 78 (116)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHH
Confidence 34556666666777788888888888876432111 33455555443
No 42
>PRK10845 colicin V production protein; Provisional
Probab=44.17 E-value=1.7e+02 Score=23.73 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc--cchHHHHHHHHHHHHHHHH-HHHHHHHhhcC
Q 028400 136 LGFGLHVVLIMFTGYLVGYLAFRALFS--HSTAMSAAGGILGLVCGML-VETLLFIIRSS 192 (209)
Q Consensus 136 l~~v~n~lvtvfa~F~~gy~~~~~~~~--~~~~~~~~~~i~glv~~l~-~E~~lfiiR~~ 192 (209)
+++++=|+++.+.+..++++....+-. -+...|.+|+++|++-|++ +-+.++++...
T Consensus 64 ~af~~iFi~v~~~~~i~~~~l~~l~~~~~Lg~~dr~lG~ifG~~rg~liv~v~l~~l~~~ 123 (162)
T PRK10845 64 IAIAVLFIATLIVGAIVNYVIGQLVEKTGLSGTDRVLGVCFGALRGVLIVAAILFFLDTF 123 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555555555555555544421 2344579999999999863 23344455443
No 43
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=43.86 E-value=43 Score=23.96 Aligned_cols=40 Identities=35% Similarity=0.617 Sum_probs=22.5
Q ss_pred HHHHhhhhh--cccchHHHHHHHHHHHHHHH---HHHHHHHHhhcCC
Q 028400 152 VGYLAFRAL--FSHSTAMSAAGGILGLVCGM---LVETLLFIIRSSN 193 (209)
Q Consensus 152 ~gy~~~~~~--~~~~~~~~~~~~i~glv~~l---~~E~~lfiiR~~~ 193 (209)
++|+..+.+ |. ..-|.+.|+|.|+++|+ +.- +||=+|..+
T Consensus 17 ~~~wl~~lld~~s-p~qW~aIGvi~gi~~~~lt~ltN-~YFK~k~dr 61 (68)
T PF04971_consen 17 AGYWLLQLLDQFS-PSQWAAIGVIGGIFFGLLTYLTN-LYFKIKEDR 61 (68)
T ss_pred HHHHHHHHHhccC-cccchhHHHHHHHHHHHHHHHhH-hhhhhhHhh
Confidence 445544444 32 22366778888888775 333 456665544
No 44
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=43.86 E-value=69 Score=28.12 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 028400 135 QLGFGLHVVLIMFTGYL 151 (209)
Q Consensus 135 ql~~v~n~lvtvfa~F~ 151 (209)
|...++-+++.++++.+
T Consensus 119 ~~l~~~~~~~~ila~~l 135 (232)
T TIGR00869 119 DYLIVILVVSIILALVL 135 (232)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44555555566665543
No 45
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=43.56 E-value=79 Score=25.64 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=15.5
Q ss_pred HHHHhhhhhcccchHHHHHHHHHHHHHHH
Q 028400 152 VGYLAFRALFSHSTAMSAAGGILGLVCGM 180 (209)
Q Consensus 152 ~gy~~~~~~~~~~~~~~~~~~i~glv~~l 180 (209)
+|.+++++++. +..+.++++++|+++|+
T Consensus 91 ~ga~l~~~~~~-~e~~~~~~~~~g~~~g~ 118 (154)
T PRK10862 91 LGAALFQLLFG-SDLAALCGALLGGVGGF 118 (154)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 34444455554 44445666677776664
No 46
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=43.32 E-value=59 Score=29.88 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 028400 142 VVLIMFTGYLVGYLAFRALFSHSTAMS----AAGGILGLVCGMLVETLLFIIRSSNHD 195 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~~~~~~~~----~~~~i~glv~~l~~E~~lfiiR~~~~~ 195 (209)
++++|++++.++||.++.+++-++-+. .-..|||.-..++++- +||..+.|
T Consensus 95 ~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~---~i~A~~~~ 149 (335)
T TIGR00698 95 DTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEP---VIKAEKEK 149 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcc---ccCCCccc
Confidence 445677889998998865566344333 2246788776665554 36665554
No 47
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=43.26 E-value=74 Score=26.74 Aligned_cols=21 Identities=0% Similarity=-0.186 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028400 135 QLGFGLHVVLIMFTGYLVGYL 155 (209)
Q Consensus 135 ql~~v~n~lvtvfa~F~~gy~ 155 (209)
.+..+.-++.+++++++.+.+
T Consensus 39 r~~~~~si~t~~~g~~~g~~y 59 (173)
T PF08566_consen 39 RINLVSSIPTGLLGSSAGWAY 59 (173)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 355555566666654443333
No 48
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=42.77 E-value=63 Score=31.13 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=35.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028400 129 FSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSN 193 (209)
Q Consensus 129 ~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~ 193 (209)
+.+.|.=.+.+.+++++++......+++.+- ....+..+++++|++...+.=.-+|-+|.--
T Consensus 150 l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~---~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 150 LTSWRMVFASLGGLLVAVLFPPLVKLFGGGD---KALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4556655677777887777766666666542 1223457777777766543222334444433
No 49
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=42.63 E-value=1.7e+02 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.059 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 028400 139 GLHVVLIMFTGYLVGYLAFRA 159 (209)
Q Consensus 139 v~n~lvtvfa~F~~gy~~~~~ 159 (209)
..|.+..+++++.+++++.+.
T Consensus 61 ~~~~~~~~~~~~l~~~~~~~~ 81 (183)
T PF01595_consen 61 LGNTLSNVLAGVLATVLASNL 81 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555554443
No 50
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=42.54 E-value=42 Score=22.01 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhh
Q 028400 144 LIMFTGYLVGYLAF 157 (209)
Q Consensus 144 vtvfa~F~~gy~~~ 157 (209)
+.++.+|+-+|.+.
T Consensus 3 ~GiiGa~vGg~l~~ 16 (48)
T PF04226_consen 3 LGIIGAFVGGWLFG 16 (48)
T ss_pred eehHHHHHHHHHHH
Confidence 34555666665544
No 51
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.22 E-value=41 Score=31.40 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHh
Q 028400 169 AAGGILGLVCGM-LVETLLFII 189 (209)
Q Consensus 169 ~~~~i~glv~~l-~~E~~lfii 189 (209)
++||+++.++.+ ++=++||+|
T Consensus 224 g~~gfl~~IlvLaIvRlILF~I 245 (372)
T KOG2927|consen 224 GAGGFLAFILVLAIVRLILFGI 245 (372)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 345555544433 334444443
No 52
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=41.93 E-value=25 Score=31.67 Aligned_cols=21 Identities=57% Similarity=0.929 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHH
Q 028400 168 SAAGGILGLVCGM----LVETLLFI 188 (209)
Q Consensus 168 ~~~~~i~glv~~l----~~E~~lfi 188 (209)
.-.||++||.+|+ ++|+++|+
T Consensus 415 ~~iGG~~gLflG~S~is~~E~i~~~ 439 (439)
T PF00858_consen 415 SDIGGILGLFLGASVISLVEIIYFF 439 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhHHHHHHhHHHHHHHHHeeeC
Confidence 3568899988886 78988773
No 53
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=41.38 E-value=66 Score=32.43 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=21.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHH-HHHHHHHHHHHH
Q 028400 129 FSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMS-AAGGILGLVCGM 180 (209)
Q Consensus 129 ~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~-~~~~i~glv~~l 180 (209)
++.+++++ ++-.++..+...|++.|+.+... .....++ ..++++|+++|+
T Consensus 266 ~~aL~~g~-~~s~~l~~v~~~~~~~~~l~~~~-~~~~~~~~f~~~~iGlv~g~ 316 (666)
T PRK00733 266 MKALNRGL-IVTAVLSIVLTYFATYWLLGDGA-DGFTWLNLFGAVLIGLVVGA 316 (666)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhcccc-cccccHHHHHHHHHHHHHHH
Confidence 34444443 33334444444444444443221 1112223 456666666654
No 54
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=41.25 E-value=1.5e+02 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHhhcc
Q 028400 95 ELKARLRQLAERAER-----DEYRELVKD 118 (209)
Q Consensus 95 El~ArlekLr~~~ee-----reY~~Mtk~ 118 (209)
-|+.|++.|.++.++ .+|+++...
T Consensus 40 iyr~qL~ELe~d~~~G~l~~~e~~~~~~E 68 (117)
T TIGR03142 40 VYRDRLAELERDLAEGLLDEAEAEAARAE 68 (117)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 388999999888774 788755543
No 55
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=40.99 E-value=28 Score=29.28 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 139 GLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 139 v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
++=.+++++.||++||++....+.
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~ 26 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINR 26 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788888887766543
No 56
>COG5346 Predicted membrane protein [Function unknown]
Probab=40.91 E-value=1e+02 Score=24.69 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028400 145 IMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSN 193 (209)
Q Consensus 145 tvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~ 193 (209)
+-..+-+||+++.-.+|+ .+ +++...|.+++++ ..++|.|+.+
T Consensus 90 tril~liFgi~LVvsi~~-~t---la~~~~Gtv~alA--laFv~~~S~~ 132 (136)
T COG5346 90 TRILLLIFGIFLVVSIFP-KT---LASLAGGTVFALA--LAFVIGRSRD 132 (136)
T ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHccchHHHHH--HHHHHhhhhh
Confidence 334444455555545554 33 3444455555543 3345566543
No 57
>PHA02690 hypothetical protein; Provisional
Probab=40.76 E-value=96 Score=23.02 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhcccchHHHHHHHHHHH
Q 028400 145 IMFTGYLVGYLAFRALFSHSTAMSAAGGILGL 176 (209)
Q Consensus 145 tvfa~F~~gy~~~~~~~~~~~~~~~~~~i~gl 176 (209)
-++|.|+.-|+..+.++- |+ +++.++++
T Consensus 48 L~lTvfV~myiv~Rl~~R-N~---gacamlAl 75 (90)
T PHA02690 48 LLLTVFVVMYIVFRLIWR-NP---GACAMLAL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHc-Ch---hHHHHHHH
Confidence 355667888999999985 88 44444443
No 58
>PHA00736 hypothetical protein
Probab=38.98 E-value=81 Score=22.63 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q 028400 167 MSAAGGILGLVCGML 181 (209)
Q Consensus 167 ~~~~~~i~glv~~l~ 181 (209)
+...++|+|++.||.
T Consensus 58 fwgi~vifgliag~v 72 (79)
T PHA00736 58 FWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHHHHHHHHh
Confidence 336677778777763
No 59
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.90 E-value=84 Score=24.03 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=11.6
Q ss_pred HHHHHHH--HHHHHHHhhhh
Q 028400 142 VVLIMFT--GYLVGYLAFRA 159 (209)
Q Consensus 142 ~lvtvfa--~F~~gy~~~~~ 159 (209)
++++.++ ||+.||+.-++
T Consensus 30 ~ilti~aiVg~i~Gf~~Qql 49 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQQQL 49 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3444444 88888887665
No 60
>PRK04081 hypothetical protein; Provisional
Probab=38.63 E-value=1.4e+02 Score=25.72 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCeEEecCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 028400 79 GSEFVFTSPKPREK--SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLA 156 (209)
Q Consensus 79 gs~i~~p~p~~~~~--spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~v~n~lvtvfa~F~~gy~~ 156 (209)
.+++++..+--.+| |+|-..+| - ++|+++-+.=|.+.+.+.. ..++. .+++ -..|+...+|.+.|=|.
T Consensus 71 ~Trvilr~~dG~ER~LS~eE~dkL---i-~eE~~KId~gTS~Ltnpn~---~~ss~--G~gL-g~~lLasaAGaiLGswI 140 (207)
T PRK04081 71 ETRVVLRDLDGTERVLSQEEIDKL---I-KEEEAKIDNGTSNLTNPNN---SNSSG--GMGL-GGTILASAAGAILGSWI 140 (207)
T ss_pred cceEEEecCCCcccccCHHHHHHH---H-HHHHHhhccCCCccCCCCc---ccccc--cccH-HHHHHHHHHHHHHhhhh
Confidence 36777776666665 65543322 2 2333333333444332211 11111 1322 35777888999999999
Q ss_pred hhhhcccchHH
Q 028400 157 FRALFSHSTAM 167 (209)
Q Consensus 157 ~~~~~~~~~~~ 167 (209)
+..+|+ |+-+
T Consensus 141 GnkLfN-N~ny 150 (207)
T PRK04081 141 GNKLFN-NQNY 150 (207)
T ss_pred hHhhhc-CHHH
Confidence 999997 6543
No 61
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=38.49 E-value=51 Score=29.14 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028400 169 AAGGILGLVCGMLVET 184 (209)
Q Consensus 169 ~~~~i~glv~~l~~E~ 184 (209)
+.++++++++|+++-.
T Consensus 84 ~~R~~lAvliaivIs~ 99 (301)
T PF14362_consen 84 LPRLLLAVLIAIVISE 99 (301)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466667777764444
No 62
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=38.27 E-value=16 Score=32.43 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028400 136 LGFGLHVVLIMFTGYLVGYLAFRALFSH-STAMSAAGGILGLVCGMLVETLLFIIRSS 192 (209)
Q Consensus 136 l~~v~n~lvtvfa~F~~gy~~~~~~~~~-~~~~~~~~~i~glv~~l~~E~~lfiiR~~ 192 (209)
++..++|+.+.+-+|.|-|+|+-..|-- +...-=-|.++|+-..++ - |.+|+|.+
T Consensus 157 vGnd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLi-k-wilIv~~s 212 (262)
T KOG4812|consen 157 VGNDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLI-K-WILIVRFS 212 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhh-e-eeEEeecc
Confidence 5777777778888888888776443320 111112255555544433 3 66777744
No 63
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=37.79 E-value=70 Score=28.93 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 028400 142 VVLIMFTGYLVGYLAFRALFSHSTAMSAA----GGILGLVCGMLVETLLFIIRSSNHDN 196 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~~~~~~~~~~----~~i~glv~~l~~E~~lfiiR~~~~~~ 196 (209)
.+++++.+|.++||.++.+|+-+.-+..+ -.|||.-..++++- +||..+.|.
T Consensus 89 ~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~---~i~a~~~~~ 144 (305)
T PF03601_consen 89 IIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAP---VIKAKEEDV 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcc---cccCCCCce
Confidence 55577789999999996667745544322 34677766555444 477766554
No 64
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=37.60 E-value=2e+02 Score=25.83 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=33.6
Q ss_pred CCCCCCcccchh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028400 122 KSSATEPFSSYK-DQLGFGLHVVLIMFTGYLVGYLAFRALFS-HSTAMSAAGGILGLVCGMLVETLLFIIR 190 (209)
Q Consensus 122 ~~~~~~~~~~~k-~ql~~v~n~lvtvfa~F~~gy~~~~~~~~-~~~~~~~~~~i~glv~~l~~E~~lfiiR 190 (209)
+.|.+.++.-.| +.++..+--++.+++||..+|-+...++. ..+.....+..++++....-|.++...|
T Consensus 68 p~d~~HpyGh~k~E~l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~ 138 (304)
T COG0053 68 PPDRDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLR 138 (304)
T ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445565555 34555555555555666666655555553 3333334444444444444444444333
No 65
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.57 E-value=46 Score=26.31 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=3.7
Q ss_pred HHHHhhcCC
Q 028400 185 LLFIIRSSN 193 (209)
Q Consensus 185 ~lfiiR~~~ 193 (209)
+|+|-|--+
T Consensus 85 ~y~irR~~K 93 (122)
T PF01102_consen 85 SYCIRRLRK 93 (122)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHHhc
Confidence 445544433
No 66
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=37.28 E-value=58 Score=24.75 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhhh---cccchHHH-HHHHHHHHHHHH
Q 028400 143 VLIMFTGYLVGYLAFRAL---FSHSTAMS-AAGGILGLVCGM 180 (209)
Q Consensus 143 lvtvfa~F~~gy~~~~~~---~~~~~~~~-~~~~i~glv~~l 180 (209)
+.|.++||..+|++-.++ |+...-|+ +...++|.+++.
T Consensus 32 ~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~sY 73 (94)
T PF15110_consen 32 LFTFVLGTGATFFLQKAIQRRLPYPFQWNILVSVVVASVASY 73 (94)
T ss_dssp HHHHHGGGGHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCCCchhHHHHHHhhhhhh
Confidence 356667888888887766 54323344 556666777654
No 67
>PRK10692 hypothetical protein; Provisional
Probab=37.25 E-value=1.8e+02 Score=21.92 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=30.6
Q ss_pred hhHHHHHHHHH--HHHH-HHHHHHHhhhhhcccc-hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028400 134 DQLGFGLHVVL--IMFT-GYLVGYLAFRALFSHS-TAMSAAGGILGLVCGMLVETLLFIIR 190 (209)
Q Consensus 134 ~ql~~v~n~lv--tvfa-~F~~gy~~~~~~~~~~-~~~~~~~~i~glv~~l~~E~~lfiiR 190 (209)
++...+-|+++ .|++ ..-+||-+...++.-+ |-+.+-+.++|+++|-+ +||.=-|
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAl--lWL~GAr 62 (92)
T PRK10692 4 KNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGAL--LWLAGAR 62 (92)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHH--HHHhccc
Confidence 34456667666 3444 3446788877777633 33344566666666643 4444333
No 68
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.05 E-value=38 Score=27.33 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccc
Q 028400 173 ILGLVCGMLVETLLFIIRSSNHDNKSS 199 (209)
Q Consensus 173 i~glv~~l~~E~~lfiiR~~~~~~~~~ 199 (209)
++|+|+|++ +.++|.|-......++
T Consensus 12 ~igLvvGi~--IG~li~Rlt~~~~k~q 36 (138)
T COG3105 12 LIGLVVGII--IGALIARLTNRKLKQQ 36 (138)
T ss_pred HHHHHHHHH--HHHHHHHHcchhhhhH
Confidence 345555543 3345677777666655
No 69
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=36.32 E-value=49 Score=23.41 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028400 169 AAGGILGLVCGMLVETLLF 187 (209)
Q Consensus 169 ~~~~i~glv~~l~~E~~lf 187 (209)
++++|+|+++|.++.-.+|
T Consensus 4 ilali~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYM 22 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777766555544
No 70
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.30 E-value=1.2e+02 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHhhhh
Q 028400 135 QLGFGLHVVLIMFT--GYLVGYLAFRA 159 (209)
Q Consensus 135 ql~~v~n~lvtvfa--~F~~gy~~~~~ 159 (209)
++.-.+.++.++|+ .|++|+||-+.
T Consensus 256 ~~mk~LTvvt~IflP~t~IaGiyGMNf 282 (318)
T TIGR00383 256 EIMKILTVVSTIFIPLTFIAGIYGMNF 282 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 35566667777776 89999999884
No 71
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=36.16 E-value=1.6e+02 Score=24.10 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGG 172 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~ 172 (209)
.+..-+++++++-|++||+.+++ .+.++....+..
T Consensus 118 a~~~s~~~~~~~L~ilG~~~a~~-s~~~~~~s~lr~ 152 (169)
T TIGR00267 118 ATIVTVLLTLIALLVLGVYLGRI-SRENILISSLKM 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHH
Confidence 44444556677778888888775 333443334433
No 72
>TIGR03426 shape_MreD rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples.
Probab=35.88 E-value=1.9e+02 Score=22.61 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFII 189 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfii 189 (209)
..|.|.+.-.+++|++++..-++.- ++.... .++..+..++.|.+.+++
T Consensus 68 ~lG~~al~~~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 116 (154)
T TIGR03426 68 PLGVHALALSLVAYLAASKFQRFRQ-FSLWQQ---ALIIFLLLILLELLVFLI 116 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHc-ccHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3688888878888888776655544 355333 222222333445555443
No 73
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=35.77 E-value=49 Score=33.44 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=22.3
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchH-HH-HHHHHHHHHHHH
Q 028400 127 EPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTA-MS-AAGGILGLVCGM 180 (209)
Q Consensus 127 ~~~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~-~~-~~~~i~glv~~l 180 (209)
++.+.+++++ ++.+++.+++..|++.|++....++.... ++ ..++++|+++|+
T Consensus 287 ~~~~aL~~g~-~vs~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iGl~~g~ 341 (682)
T PF03030_consen 287 DPMKALRRGY-IVSSILSIILFFFLTYWLLGFSFFGSGISWWGLFGCVLIGLVAGV 341 (682)
T ss_dssp GHHHHHHHHH-HHHHHHHHHHHHHHHHHHSEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHH
Confidence 3445555554 33344444444444444441111221111 22 445555555544
No 74
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.65 E-value=2e+02 Score=22.04 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccc
Q 028400 175 GLVCGMLVETLLFIIRSSNHDNKS 198 (209)
Q Consensus 175 glv~~l~~E~~lfiiR~~~~~~~~ 198 (209)
++|+++=+.+.++|-|....+..+
T Consensus 72 ~aVVavHvalglyiy~A~~~~sr~ 95 (102)
T KOG4783|consen 72 CAVVAVHVALGLYIYRAIYAKSRT 95 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcc
Confidence 344444455667777877665443
No 75
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=35.38 E-value=1.8e+02 Score=24.47 Aligned_cols=23 Identities=17% Similarity=0.493 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRA 159 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~ 159 (209)
.+..-+++++++-|++||+.+.+
T Consensus 162 a~~~s~~~~~~~L~~~G~~~a~~ 184 (213)
T PF01988_consen 162 AFIASIAVTILALFILGYFKARI 184 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566677778888887775
No 76
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=35.07 E-value=1.9e+02 Score=21.65 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=2.8
Q ss_pred hhhhhhh
Q 028400 201 TASKQKK 207 (209)
Q Consensus 201 ~~~~~~~ 207 (209)
+...+|+
T Consensus 107 t~~~l~~ 113 (121)
T PF07332_consen 107 TIAELKE 113 (121)
T ss_pred HHHHHHH
Confidence 3344443
No 77
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=35.04 E-value=1e+02 Score=23.39 Aligned_cols=45 Identities=27% Similarity=0.184 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHH-HHHHHHHHHHHHHHHH
Q 028400 136 LGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMS-AAGGILGLVCGMLVET 184 (209)
Q Consensus 136 l~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~-~~~~i~glv~~l~~E~ 184 (209)
..-.+.+++..+.|++..|+-.+. +.+.+ .+|+++|+...-+.|.
T Consensus 35 ~iPlIs~viGilLG~~~~~~~~~~----~l~~~~~aG~laGlAaTGL~e~ 80 (93)
T PF06946_consen 35 WIPLISVVIGILLGAAAYPLTGDG----NLALMAWAGGLAGLAATGLFEQ 80 (93)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCCc----cHHHHHHHHHHhhhhhhhHHHH
Confidence 444556666666666555544332 23332 5677777766444565
No 78
>PRK09669 putative symporter YagG; Provisional
Probab=34.86 E-value=52 Score=30.00 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM 180 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l 180 (209)
+.+..++.++++..++.+++.. +....++.++.++|+++.+
T Consensus 155 ~~~G~~i~~~~~~pl~~~~~~~---~~~~g~~~~~~i~~ii~~v 195 (444)
T PRK09669 155 SFIGGLIVSVIALPLVDILGKG---DEQKGYFYAMMVMGLLGVV 195 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHHH
Confidence 3333444444444444444321 1123456666666665543
No 79
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=34.75 E-value=2.1e+02 Score=23.41 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFT 148 (209)
Q Consensus 137 ~~v~n~lvtvfa 148 (209)
...++|-+.+.+
T Consensus 117 ~~~lQIaI~Las 128 (157)
T PF14235_consen 117 VALLQIAIVLAS 128 (157)
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 80
>COG2261 Predicted membrane protein [Function unknown]
Probab=34.66 E-value=98 Score=22.92 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-chH--HHHHHHHHHHHHH
Q 028400 141 HVVLIMFTGYLVGYLAFRALFSH-STA--MSAAGGILGLVCG 179 (209)
Q Consensus 141 n~lvtvfa~F~~gy~~~~~~~~~-~~~--~~~~~~i~glv~~ 179 (209)
+++.+++-+..+||.++..+=++ +.. ++...+|+|+++|
T Consensus 2 g~i~~IIiG~iaG~lA~~i~~g~~~~G~~~nIilGIVGA~vg 43 (82)
T COG2261 2 GIIAWIIIGLIAGWLAGKIMPGGGGGGIFMNIILGIVGAFVG 43 (82)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHH
Confidence 35566677777777777654321 222 3466667777664
No 81
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=34.50 E-value=1.4e+02 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRA 159 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~ 159 (209)
.+..-+++++++-|++||+.+..
T Consensus 184 a~~~si~l~~~aL~ilG~~~s~~ 206 (241)
T cd02435 184 ALLLSVIVTLVALFVFGYVKTWF 206 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566777788888888865
No 82
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=34.45 E-value=18 Score=18.26 Aligned_cols=11 Identities=9% Similarity=0.431 Sum_probs=8.0
Q ss_pred HHHHHHhhccC
Q 028400 109 RDEYRELVKDI 119 (209)
Q Consensus 109 ereY~~Mtk~v 119 (209)
+.||++|..+.
T Consensus 2 eee~~km~~~l 12 (15)
T PF10550_consen 2 EEEVAKMAAEL 12 (15)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 56888887654
No 83
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=34.23 E-value=2e+02 Score=22.45 Aligned_cols=57 Identities=30% Similarity=0.389 Sum_probs=30.1
Q ss_pred cchhhhH-HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHhhcCC
Q 028400 130 SSYKDQL-GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVC-GMLVETLLFIIRSSN 193 (209)
Q Consensus 130 ~~~k~ql-~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~-~l~~E~~lfiiR~~~ 193 (209)
++.|+++ ++++-+++|+.+...+-+-+ |+.+. .+..|+|+.+ =+++.++||+==+.+
T Consensus 15 ~s~k~y~iGFvLsIiLT~ipF~~vm~~~----~~~~~---~~~~i~~lA~iQi~vqLvyFlHM~~~ 73 (111)
T COG3125 15 GSLKSYLIGFVLSIILTLIPFWVVMTGA----LSSTV---TLIIILGLAVIQILVHLVYFLHMNTK 73 (111)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhh---HHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3478774 89998888887655433322 22111 2333333333 235677777544433
No 84
>PF12557 Co_AT_N: Cob(I)alamin adenosyltransferase N terminal ; PDB: 1G64_B.
Probab=34.10 E-value=42 Score=19.15 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 028400 92 KSEELKARLRQLAERAERD 110 (209)
Q Consensus 92 ~spEl~ArlekLr~~~eer 110 (209)
.+.-+++||+|.|+.++.+
T Consensus 5 ~~~rh~~rmqr~K~~vD~~ 23 (24)
T PF12557_consen 5 KDERHRARMQRKKEVVDAR 23 (24)
T ss_dssp -------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3556889999999998865
No 85
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=33.77 E-value=2e+02 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTA 166 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~ 166 (209)
.+..-+++++++-|++||+.++. -+.++.
T Consensus 166 ~~~~s~~~~~~aL~~~G~~~a~~-~~~~~~ 194 (218)
T cd02432 166 KVPVTIIATLLALALTGYVSARL-GGASVL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCHH
Confidence 34445566777888888888876 333443
No 86
>PF13974 YebO: YebO-like protein
Probab=33.75 E-value=35 Score=25.17 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q 028400 172 GILGLVCGMLVETLLFIIRSSNH 194 (209)
Q Consensus 172 ~i~glv~~l~~E~~lfiiR~~~~ 194 (209)
.++++++|++ +|+|+-|.+.-
T Consensus 4 ~~~~~lv~li--vWFFVnRaSvR 24 (80)
T PF13974_consen 4 SVLVLLVGLI--VWFFVNRASVR 24 (80)
T ss_pred hHHHHHHHHH--HHHHHHHHHHh
Confidence 3455666665 68888887653
No 87
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=33.71 E-value=1.5e+02 Score=23.33 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVC 178 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~ 178 (209)
++++.++++++.++++||+. +. ++..+++.++++.+
T Consensus 33 ~~~~g~~~gl~la~~~g~~a----~~--pt~~ll~~~~~v~~ 68 (121)
T PF11990_consen 33 GFVAGLVVGLPLALLTGWWA----MI--PTGALLGPILGVFV 68 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHH
Confidence 44445555555555555543 21 33334455555544
No 88
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=33.43 E-value=1.5e+02 Score=26.93 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=22.6
Q ss_pred chhhhHHHHHHH-HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Q 028400 131 SYKDQLGFGLHV-VLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCG 179 (209)
Q Consensus 131 ~~k~ql~~v~n~-lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~ 179 (209)
++++.++--.|. +.|+++.++...||+..+++ - .+..++|+++|
T Consensus 230 si~qTlsRti~Ts~ttll~~~~l~~fgg~~l~~--f---a~~llvGii~g 274 (305)
T COG0341 230 SINQTLTRTINTSVTTLLVVVALLLFGGGSLKD--F---ALALLVGIIAG 274 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH--H---HHHHHHHHHHH
Confidence 344445333333 33555666666666666553 3 44455555554
No 89
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=33.40 E-value=1.9e+02 Score=24.75 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFSHSTAM 167 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~ 167 (209)
.++.-+++++++.|.+|++.++.... +...
T Consensus 173 al~~si~~~~l~L~ilG~~~a~~s~~-~~~~ 202 (229)
T COG1814 173 ALIASIILALLALAILGAVLARLSGA-SIAK 202 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-cHHH
Confidence 44777788888899999999988665 5543
No 90
>PRK10429 melibiose:sodium symporter; Provisional
Probab=33.25 E-value=69 Score=29.65 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHHHhhccCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHH
Q 028400 111 EYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCG 179 (209)
Q Consensus 111 eY~~Mtk~v~~~~~~~~~~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~ 179 (209)
-|..|.-+++...+.+..+..+++..+.+..+++++++...+.+++.. ++...+...+.++++++.
T Consensus 126 p~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~---~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 126 PFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG---DRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred hHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---chhhhHHHHHHHHHHHHH
Confidence 477777666543333334455655444444555555444334444321 111234455555555544
No 91
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.03 E-value=66 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 028400 142 VVLIMFTGYLVGYLAFRALF 161 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~~ 161 (209)
+++...+|++.|||.++..+
T Consensus 10 ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 10 IVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455668888888887664
No 92
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=32.94 E-value=1.6e+02 Score=22.21 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=29.0
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q 028400 132 YKDQL-GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGL-VCGMLVETLLFIIRS 191 (209)
Q Consensus 132 ~k~ql-~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~gl-v~~l~~E~~lfiiR~ 191 (209)
.|+++ ++++-++.|.++.+++.|- .++.+. ....++++ ++=+++..+||+==+
T Consensus 6 ~~~yviGFiLSiiLT~i~F~~v~~~----~~~~~~---~~~~i~~lA~iQi~VqL~~FLHm~ 60 (94)
T TIGR02901 6 PWKHVNGFILSLLLTFLALWVALYS----DLPLAM---GLTIIIIFAFIQAGLQLIMFMHAG 60 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc----cCChhH---HHHHHHHHHHHHHHHHHHHheeec
Confidence 46664 8888888777776665442 243222 22233332 233467888885433
No 93
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=32.92 E-value=2.2e+02 Score=21.73 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhcCCCccc
Q 028400 167 MSAAGGILGLVCGML-VETLLFIIRSSNHDNK 197 (209)
Q Consensus 167 ~~~~~~i~glv~~l~-~E~~lfiiR~~~~~~~ 197 (209)
.|.+|+++|++.|.+ +-..++++........
T Consensus 97 dr~lG~~~G~~~~~li~~~~~~~~~~~~~~~~ 128 (146)
T PF02674_consen 97 DRLLGALLGLAKGLLILSLLLFLLNLIPNPGF 128 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch
Confidence 468899999888752 2344455555544443
No 94
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=32.85 E-value=1e+02 Score=24.74 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHH
Q 028400 145 IMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGML 181 (209)
Q Consensus 145 tvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~ 181 (209)
.++.+.+++|.++.-+|+.+..|-++......+++.+
T Consensus 19 ~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFl 55 (132)
T PF04120_consen 19 VIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFL 55 (132)
T ss_pred HHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHH
Confidence 3344667788888888888887775554444445543
No 95
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=31.97 E-value=3.1e+02 Score=24.08 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCC
Q 028400 104 AERAERDEYRELVKDILPKSSA 125 (209)
Q Consensus 104 r~~~eereY~~Mtk~v~~~~~~ 125 (209)
|+-..+-.|+|+|||-=.++|+
T Consensus 33 ~kVyr~~~yrKqTKnqwaRDDP 54 (231)
T PF05216_consen 33 RKVYRNFYYRKQTKNQWARDDP 54 (231)
T ss_pred HHHHHHhhhcccCCccccCCCc
Confidence 3445666777787776555443
No 96
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=31.69 E-value=2e+02 Score=20.89 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=18.6
Q ss_pred hcccchHHHHHHHHHHHHHHHH--HHHHHHHhhcCCCcccc
Q 028400 160 LFSHSTAMSAAGGILGLVCGML--VETLLFIIRSSNHDNKS 198 (209)
Q Consensus 160 ~~~~~~~~~~~~~i~glv~~l~--~E~~lfiiR~~~~~~~~ 198 (209)
++| -|.|....-|+|.++..+ .=++-++-|+...|.++
T Consensus 39 i~G-lPlWF~~SCi~~~il~~~l~~~~vk~~Fkd~~Ld~~~ 78 (80)
T PF06196_consen 39 IFG-LPLWFFYSCIGGPILFIILVWLMVKFFFKDIPLDDEE 78 (80)
T ss_pred ccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Confidence 454 566765555555444321 11222445676666544
No 97
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=31.44 E-value=42 Score=26.39 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 028400 169 AAGGILGLVCGM 180 (209)
Q Consensus 169 ~~~~i~glv~~l 180 (209)
++|||+|++.||
T Consensus 12 liGgiiGa~aaL 23 (115)
T COG4980 12 LIGGIIGAAAAL 23 (115)
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 98
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=31.38 E-value=63 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=13.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 028400 131 SYKDQLGFGLHVVLIMFTGYLVGYL 155 (209)
Q Consensus 131 ~~k~ql~~v~n~lvtvfa~F~~gy~ 155 (209)
.+++-..+...|++-.+++|++.|.
T Consensus 47 gikev~l~l~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 47 GIKEVALVLAAILVLLLAFYAFFYL 71 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555566666666654
No 99
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=31.25 E-value=90 Score=27.78 Aligned_cols=14 Identities=14% Similarity=-0.016 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 028400 166 AMSAAGGILGLVCG 179 (209)
Q Consensus 166 ~~~~~~~i~glv~~ 179 (209)
.|+..+.++|+++.
T Consensus 171 g~~~~~~i~~~l~~ 184 (437)
T TIGR00792 171 GWFMFALVLALIGV 184 (437)
T ss_pred cHHHHHHHHHHHHH
Confidence 46655555555443
No 100
>PRK11677 hypothetical protein; Provisional
Probab=30.81 E-value=48 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 028400 142 VVLIMFTGYLVGYLAFRAL 160 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~~ 160 (209)
.+++++.|+++||+++++.
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4456667777888887763
No 101
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=30.35 E-value=66 Score=24.25 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.4
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHH
Q 028400 84 FTSPKPREKSEELKARLRQLAERAE 108 (209)
Q Consensus 84 ~p~p~~~~~spEl~ArlekLr~~~e 108 (209)
+|++++.+.+|++.++.+++.+..+
T Consensus 1 iPp~P~g~~~~~l~~Ki~~fl~lk~ 25 (96)
T PF07818_consen 1 IPPSPPGSCDPELQAKIAKFLELKR 25 (96)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4655556679999999988776644
No 102
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=30.31 E-value=1.2e+02 Score=21.02 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028400 167 MSAAGGILGLVCGML 181 (209)
Q Consensus 167 ~~~~~~i~glv~~l~ 181 (209)
|.+.+|+++.++|++
T Consensus 43 ~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 43 WYLIGGAVAVIVGLF 57 (59)
T ss_pred HHHHhHHHHHHHHHh
Confidence 346677777777753
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.16 E-value=2.5e+02 Score=22.77 Aligned_cols=7 Identities=29% Similarity=0.605 Sum_probs=2.8
Q ss_pred HHHHhhc
Q 028400 185 LLFIIRS 191 (209)
Q Consensus 185 ~lfiiR~ 191 (209)
++++.+.
T Consensus 57 ~~~~~~~ 63 (191)
T PF04156_consen 57 LLCLLSK 63 (191)
T ss_pred HHHHHHc
Confidence 3344443
No 104
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=30.13 E-value=44 Score=32.92 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhh
Q 028400 169 AAGGILGLVCGM----LVETLLFIIR 190 (209)
Q Consensus 169 ~~~~i~glv~~l----~~E~~lfiiR 190 (209)
-.||++||.+|+ ++|+++|+++
T Consensus 497 diGG~lGLfmG~SvLSi~Eii~~l~~ 522 (595)
T TIGR00859 497 NLGGQMGLWMGASVLCVLELLELIID 522 (595)
T ss_pred HHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 458888888876 7898888764
No 105
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=30.07 E-value=1.3e+02 Score=31.00 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 028400 87 PKPREKSEELKARLRQLAERAER 109 (209)
Q Consensus 87 p~~~~~spEl~ArlekLr~~~ee 109 (209)
++..|.++|-.+..++||+..++
T Consensus 692 ~~~~p~~~~~~~~v~~lr~~~~~ 714 (910)
T TIGR00833 692 GDGSPAGDQGAQEFNAIRTVAEE 714 (910)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Confidence 44556688877888888887653
No 106
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=29.77 E-value=2.3e+02 Score=23.64 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 028400 136 LGFGLHVVLIMFTGYLVGYLAFRAL 160 (209)
Q Consensus 136 l~~v~n~lvtvfa~F~~gy~~~~~~ 160 (209)
...|+|++...+-.-+++|+..+.+
T Consensus 103 ~~lG~N~l~m~~~~~~~~~~~~~~l 127 (205)
T PF01891_consen 103 TALGANALNMGVPPVLVSYLLFRLL 127 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999987777777777777655
No 107
>cd03393 PAP2_like_3 PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=28.98 E-value=1.7e+02 Score=22.20 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=17.2
Q ss_pred HHHHhhhhhcc-cchHHHHHHHHHHHHHHHHHH
Q 028400 152 VGYLAFRALFS-HSTAMSAAGGILGLVCGMLVE 183 (209)
Q Consensus 152 ~gy~~~~~~~~-~~~~~~~~~~i~glv~~l~~E 183 (209)
+....++-..+ |.+.-.+.|.++|.+++.++|
T Consensus 93 ~~v~~sRv~lg~H~~sDVl~G~~lG~~~~~~~~ 125 (125)
T cd03393 93 VLISFSRLYLGVHWPSDVIGGVLIGLLVLVLGE 125 (125)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhC
Confidence 33334444433 444444667777777766554
No 108
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=28.91 E-value=1.9e+02 Score=21.28 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhhhcccchHHH------HHHHHHHHHH-------HHHHHHHHHHhhcCC
Q 028400 144 LIMFTGYLVGYLAFRALFSHSTAMS------AAGGILGLVC-------GMLVETLLFIIRSSN 193 (209)
Q Consensus 144 vtvfa~F~~gy~~~~~~~~~~~~~~------~~~~i~glv~-------~l~~E~~lfiiR~~~ 193 (209)
++...|+..-|.+.+..+..+.+.. +-.++.|++. |..+...|||--+-+
T Consensus 2 ~~~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~iaA~~yFI~STls 64 (78)
T PF09882_consen 2 AIIIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGAIAAIAYFIGSTLS 64 (78)
T ss_pred hhHHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhhhch
Confidence 3455677778888888887777642 2233334433 556667788755544
No 109
>COG3771 Predicted membrane protein [Function unknown]
Probab=28.26 E-value=63 Score=24.41 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHhhhhh
Q 028400 135 QLGFGLHVVLIMFT-GYLVGYLAFRAL 160 (209)
Q Consensus 135 ql~~v~n~lvtvfa-~F~~gy~~~~~~ 160 (209)
|++..+. ++|+ ||++||......
T Consensus 40 ~LSTLla---~lF~~G~~lgwli~g~f 63 (97)
T COG3771 40 RLSTLLA---TLFAAGFALGWLICGLF 63 (97)
T ss_pred hHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4555443 4444 788887665543
No 110
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=28.17 E-value=1.7e+02 Score=20.83 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHHHH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGL 140 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~v~ 140 (209)
.+|+.+++..|+.++=+-.++.-+..+.. +..++.++++|.=+.
T Consensus 13 ~eeL~~~l~eLK~ELf~LR~q~a~g~l~n----~~~ir~vRr~IARi~ 56 (69)
T COG0255 13 VEELEEELRELKKELFNLRFQLATGQLEN----PHRIREVRRDIARIL 56 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC----cHHHHHHHHHHHHHH
Confidence 67899999999999999999999988863 344678888775443
No 111
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=28.08 E-value=2.6e+02 Score=21.04 Aligned_cols=55 Identities=29% Similarity=0.257 Sum_probs=27.4
Q ss_pred chhhhH-HHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400 131 SYKDQL-GFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRS 191 (209)
Q Consensus 131 ~~k~ql-~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~ 191 (209)
+.|+++ ++++-++.|.++.+++.+- . ++... .....++|| ++-+++..+||+==+
T Consensus 3 ~~k~yviGFiLsliLT~i~F~~v~~~---~-~~~~~-~~~~i~~~A-~iQi~vqL~~FlHl~ 58 (96)
T TIGR02847 3 SLKSYLIGFVLSVILTAIPFGLVMSG---T-LSKGL-TLVIIIVLA-VVQILVHLVFFLHLN 58 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHc---c-CCHhH-HHHHHHHHH-HHHHHHHHHHHhhcc
Confidence 345553 6666666666665554432 2 33222 122233343 344578888885333
No 112
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=27.98 E-value=1.9e+02 Score=23.17 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 028400 170 AGGILGLVCGMLVETL 185 (209)
Q Consensus 170 ~~~i~glv~~l~~E~~ 185 (209)
...+.|+++|. .|.+
T Consensus 90 ~allsA~~i~v-~E~f 104 (136)
T PF10710_consen 90 AALLSAVLIGV-GEYF 104 (136)
T ss_pred HHHHHHHHHHH-HHHH
Confidence 34456667775 5854
No 113
>TIGR02586 cas_devS CRISPR-associated protein DevS. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.
Probab=27.85 E-value=1e+02 Score=26.17 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=44.4
Q ss_pred hhcCCCCCChHHHHHHHhhcC-------C-CCccchhhhcCCCeEEecCCCCCC-CC-HHHHHHHHHHHHHHHHHHH---
Q 028400 46 NLSSLNKAPYKSIRQIWVGSL-------P-SIRPDLFRLFSGSEFVFTSPKPRE-KS-EELKARLRQLAERAERDEY--- 112 (209)
Q Consensus 46 ~~L~~~~Ip~~~l~~l~~~~~-------~-~~~~~L~~LL~gs~i~~p~p~~~~-~s-pEl~ArlekLr~~~eereY--- 112 (209)
-++.+++|+ ..+|++|.... . ...|+.++||.+-++++=---..+ .+ |||.+|+ +.-.++=||
T Consensus 58 a~~~~p~~s-~~lR~~~r~k~~~~~~~~~~~~~P~~qElL~d~~~iv~~~s~ee~~~~~~L~erl---~~Al~~Pe~i~R 133 (188)
T TIGR02586 58 AVADANPIS-ARLRTFRRMKNLGDAGGDDENAAPDQQELVIDARGIVACDGLEAPDSGEELADPM---KRALREPEKIIR 133 (188)
T ss_pred hhhcCCcch-hHHHHHHHHhhcccccCCccccChhHHHHhhCceEEEEEcCccccccchhHHHHH---HHHHhCchheec
Confidence 344444443 67888876642 1 257999999999999886332222 24 8886665 445556666
Q ss_pred ---------HHhhccCC
Q 028400 113 ---------RELVKDIL 120 (209)
Q Consensus 113 ---------~~Mtk~v~ 120 (209)
..+++++.
T Consensus 134 ~G~LsLGeSd~Lvn~i~ 150 (188)
T TIGR02586 134 AGGLSLGESSFLIDDAR 150 (188)
T ss_pred ccceeecchHHhhccee
Confidence 56666664
No 114
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=27.78 E-value=4.6e+02 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC
Q 028400 99 RLRQLAERAERDEYRELVKDILP 121 (209)
Q Consensus 99 rlekLr~~~eereY~~Mtk~v~~ 121 (209)
.+++++++.|+.+|++|+||..+
T Consensus 100 dl~~l~~qkd~L~~e~~~r~~~t 122 (322)
T TIGR03782 100 DMNRYREQKDKLEYEAMVRDPET 122 (322)
T ss_pred HHHHHHHHHHHHHHHHHhcCcch
Confidence 48889999999999999999744
No 115
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=27.68 E-value=20 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhhcCCCcc
Q 028400 169 AAGGILGLVCG--MLVETLLFIIRSSNHDN 196 (209)
Q Consensus 169 ~~~~i~glv~~--l~~E~~lfiiR~~~~~~ 196 (209)
++|+|+|+++| ++.-++.|++|-|++..
T Consensus 131 LVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 131 LVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp ------------------------------
T ss_pred eeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 45666666663 35556678888887653
No 116
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=27.58 E-value=2.2e+02 Score=19.99 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028400 149 GYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSN 193 (209)
Q Consensus 149 ~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~ 193 (209)
+|+.-|..+..++.+.| .+..+++|+++++..= |++.|...
T Consensus 15 ~~~vi~~v~~~~~~~~p--~~~~~l~A~vis~~lS--~~ll~~~R 55 (69)
T PF14012_consen 15 LFAVIWLVGLLIGVEVP--LLVAALLALVISMPLS--YVLLRRLR 55 (69)
T ss_pred HHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 44444444433333222 2567778888877543 34445443
No 117
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=26.84 E-value=2e+02 Score=19.37 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLG 137 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~ 137 (209)
.+|+.+.++.|+.+.-+-..+.-++.+.. +..++..|+.+.
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~~~~l~n----~~~ir~~Rr~IA 49 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKATGQLEN----PHRIREIRRDIA 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSSC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc----ccHHHHHHHHHH
Confidence 57899999999999999999999987743 445677777664
No 118
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=26.60 E-value=56 Score=28.65 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=33.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhhhcccc----hHHH----HHHHHHHHHHHHHHHHHHHHhhcC
Q 028400 137 GFGLHVVL-IMFTGYLVGYLAFRALFSHS----TAMS----AAGGILGLVCGMLVETLLFIIRSS 192 (209)
Q Consensus 137 ~~v~n~lv-tvfa~F~~gy~~~~~~~~~~----~~~~----~~~~i~glv~~l~~E~~lfiiR~~ 192 (209)
+.-+|+=+ .|+.+++.|......+|..- .+.. .+|+++|..+.. -+.++++|--
T Consensus 50 s~lFH~GIl~v~~gH~~gll~P~s~~~~~gi~~~~~~~~ai~~G~iaGv~~li--G~~~L~~RR~ 112 (228)
T COG2181 50 SNLFHIGILLVLLGHAIGLLTPHSWFAALGISVEAKQLMAIVLGGIAGVLTLI--GLTLLLLRRL 112 (228)
T ss_pred CchHHHHHHHHHHHHHhheeChHHHHHHhcCchhhccceeeehhhHHHHHHHH--HHHHHHHHHH
Confidence 66677655 78889999999877776522 2222 456677765532 2344555543
No 119
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.32 E-value=2.6e+02 Score=21.48 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhhhccc----ch-HHHHHHHHHHHHHHHH
Q 028400 144 LIMFTGYLVGYLAFRALFSH----ST-AMSAAGGILGLVCGML 181 (209)
Q Consensus 144 vtvfa~F~~gy~~~~~~~~~----~~-~~~~~~~i~glv~~l~ 181 (209)
+..+++|.++|++.+.++.. +| .+-++-+++.+..++.
T Consensus 7 i~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ 49 (108)
T PF06210_consen 7 IIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQ 49 (108)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHH
Confidence 45677888888888775432 22 2345555555555543
No 120
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=26.22 E-value=1.3e+02 Score=24.79 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhhcccchHHHHHHHHHHHHH
Q 028400 146 MFTGYLVGYLAFRALFSHSTAMSAAGGILGLVC 178 (209)
Q Consensus 146 vfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~ 178 (209)
.+.+.++.|+.++++|.-|+ -.++|+++|+.-
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~-~~~~G~~aGa~T 125 (169)
T PF06826_consen 94 TLVPLLIALVIGRYLFKLNP-GIAAGILAGALT 125 (169)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHHHHHHHcccc
Confidence 33466777777787777443 345666665543
No 121
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=25.97 E-value=3.1e+02 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q 028400 136 LGFGLHVVLIMFTGYLVGYLAFRALF 161 (209)
Q Consensus 136 l~~v~n~lvtvfa~F~~gy~~~~~~~ 161 (209)
...+.|++...+.+-+++|+..+.+.
T Consensus 104 ~~LG~N~l~ma~v~~~~~y~i~r~l~ 129 (230)
T PRK11909 104 TAIGANCFNMAFVLPFVGYYVYKLLS 129 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788887655555555666655543
No 122
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=25.85 E-value=1.6e+02 Score=21.88 Aligned_cols=18 Identities=28% Similarity=0.124 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 028400 142 VVLIMFTGYLVGYLAFRA 159 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~ 159 (209)
-++.++.+|+.|++.+..
T Consensus 22 E~i~~~~~~~~Gi~~~~~ 39 (95)
T TIGR02762 22 EFLPGATLFGIGILSGKA 39 (95)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 345667788888877654
No 123
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=25.79 E-value=1.9e+02 Score=23.90 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 028400 169 AAGGILGLVCGM 180 (209)
Q Consensus 169 ~~~~i~glv~~l 180 (209)
++.++++++++.
T Consensus 171 ~~~~l~a~~i~~ 182 (209)
T PF14023_consen 171 IAIALFAASIAL 182 (209)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 124
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=25.56 E-value=3.4e+02 Score=24.13 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028400 168 SAAGGILGLVCGMLVET 184 (209)
Q Consensus 168 ~~~~~i~glv~~l~~E~ 184 (209)
.+..|++|+++|+++..
T Consensus 97 ~a~~G~~glaiG~a~q~ 113 (286)
T PRK10334 97 IAVLGAAGLAVGLALQG 113 (286)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667778888775543
No 125
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=25.51 E-value=1.3e+02 Score=22.86 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHh-----hhhhcccchHHH--HHHHHHHHHHHHHHHH
Q 028400 142 VVLIMFTGYLVGYLA-----FRALFSHSTAMS--AAGGILGLVCGMLVET 184 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~-----~~~~~~~~~~~~--~~~~i~glv~~l~~E~ 184 (209)
+++.++|.+..|.+= ++|-|+. ..|. ++.||+.++++++++.
T Consensus 6 iiigi~tFliIG~fHpiVIk~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~~ 54 (94)
T PF14898_consen 6 IIIGIATFLIIGLFHPIVIKGEYYFGT-RIWPIFLLAGIACIIASLFVSN 54 (94)
T ss_pred HHHHHHHHHHHHccCeEEEEEEEecCC-CcHHHHHHHHHHHHHHHHHHcc
Confidence 455666666666543 2566663 3332 5555555555554443
No 126
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=25.35 E-value=1.4e+02 Score=24.25 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHH
Q 028400 133 KDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVC 178 (209)
Q Consensus 133 k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~ 178 (209)
.-|++++.==++-|++|.++-|.....++. |+.+.+.-.++|+|=
T Consensus 63 AfqItl~VlGiiLviagl~l~fil~~~lg~-naf~~~IPAviGlvk 107 (150)
T PF05745_consen 63 AFQITLVVLGIILVIAGLALTFILHSQLGN-NAFLFIIPAVIGLVK 107 (150)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhehhhhcC-ccchhhHHHHHHHHH
Confidence 346765555555677888888888887775 776665555566554
No 127
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=25.24 E-value=2.7e+02 Score=20.11 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHH
Q 028400 147 FTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGM 180 (209)
Q Consensus 147 fa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l 180 (209)
++..++-+.|..++|++.....+.++++|.++..
T Consensus 57 i~~i~ii~~g~~~~~g~~~~~~~~~~v~G~~iv~ 90 (99)
T PF04956_consen 57 IAIIAIIVAGIMMMFGRQSWRWFIGVVIGIIIVF 90 (99)
T ss_pred HHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHH
Confidence 3344444555566677545444666666666644
No 128
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=24.96 E-value=3.7e+02 Score=25.63 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 028400 172 GILGLVCGMLVETLLFIIRSSN 193 (209)
Q Consensus 172 ~i~glv~~l~~E~~lfiiR~~~ 193 (209)
.++..++|++.|.+.-.+|.-+
T Consensus 125 ~~vs~~~a~~~E~l~~~~r~~~ 146 (413)
T TIGR01937 125 LLVSYAVGGTWEVLFAVVRKHE 146 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 4566777888998777776543
No 129
>PRK09546 zntB zinc transporter; Reviewed
Probab=24.86 E-value=2e+02 Score=25.66 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=14.1
Q ss_pred HHHHHHHHHH--HHHHHHHhhhh
Q 028400 139 GLHVVLIMFT--GYLVGYLAFRA 159 (209)
Q Consensus 139 v~n~lvtvfa--~F~~gy~~~~~ 159 (209)
++-++.++|. +|++|+||-+.
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf 288 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNL 288 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhcccc
Confidence 3444444443 89999999984
No 130
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=24.78 E-value=1.5e+02 Score=21.83 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 028400 142 VVLIMFTGYLVGYLAFRA 159 (209)
Q Consensus 142 ~lvtvfa~F~~gy~~~~~ 159 (209)
-++.++++|++|++....
T Consensus 22 e~~~~~~~~~~gi~~~~~ 39 (95)
T PF07178_consen 22 EFIPALILFVIGILSGHF 39 (95)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 345566677777666553
No 131
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=24.74 E-value=2.1e+02 Score=25.92 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHhhhh
Q 028400 135 QLGFGLHVVLIMFT--GYLVGYLAFRA 159 (209)
Q Consensus 135 ql~~v~n~lvtvfa--~F~~gy~~~~~ 159 (209)
++.-++-++.++|+ +|++|+||-++
T Consensus 254 ~~mk~lTv~s~if~pptliagiyGMNf 280 (316)
T PRK11085 254 RIIKIFSVVSVVFLPPTLVASSYGMNF 280 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34555556666665 88899999884
No 132
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.70 E-value=4.8e+02 Score=25.65 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhc----CCCCCHHHHHHHHhhcCCCCCChHHHHHHHhhc-CCCCc-c----chhhhc-CCCeEEecCCCC
Q 028400 21 DSIRSFLLSASE----DVQLPRELRETALNLSSLNKAPYKSIRQIWVGS-LPSIR-P----DLFRLF-SGSEFVFTSPKP 89 (209)
Q Consensus 21 ~~Ir~~L~~a~~----~~~l~~~Lr~~~~~~L~~~~Ip~~~l~~l~~~~-~~~~~-~----~L~~LL-~gs~i~~p~p~~ 89 (209)
|.|+++-.++|- +-..+.+.+..+++. |..++++|.-. |+..+ + ..+.|= +|=++.++.
T Consensus 24 eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~-------F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gwEl~~r~--- 93 (546)
T KOG0718|consen 24 EEIKKAYRRLSRLFHPDKHTDPDQKKAAEEK-------FQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGWELGFRG--- 93 (546)
T ss_pred HHHHHHHHHHHHhcCCcccCChhHHHHHHHH-------HHHHHHHHHHhcChHHHHHHHHhhhccccccCceeecCC---
Confidence 567777766652 233566777777766 77777777653 44322 2 233443 555665542
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028400 90 REKSEELKARLRQLAERAERDEYRELVKDI 119 (209)
Q Consensus 90 ~~~spEl~ArlekLr~~~eereY~~Mtk~v 119 (209)
...+|++...|+|+++.|+++-+.-|.+-
T Consensus 94 -~tpeEIreE~Erl~r~~de~~l~qr~~P~ 122 (546)
T KOG0718|consen 94 -KTPEEIREEYERLQRERDERRLQQRVQPT 122 (546)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 12567888899999999988888877743
No 133
>PHA03231 glycoprotein BALF4; Provisional
Probab=24.49 E-value=2.1e+02 Score=29.72 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.7
Q ss_pred HHHHHHhhccCCC
Q 028400 109 RDEYRELVKDILP 121 (209)
Q Consensus 109 ereY~~Mtk~v~~ 121 (209)
..-|..-+++++.
T Consensus 639 yN~y~qr~~dld~ 651 (829)
T PHA03231 639 YNLYKQRFYDIDN 651 (829)
T ss_pred HHHHHHHHHHhhh
Confidence 3445445566654
No 134
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=24.39 E-value=2.8e+02 Score=20.80 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 028400 136 LGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLF 187 (209)
Q Consensus 136 l~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lf 187 (209)
...+.|++..+--||.+.+...+.- ......++++++++..|+.=+
T Consensus 52 ~~~~~hi~~f~plG~l~~~~~~~~~------~~~~~~~~~~~~sl~iE~~Q~ 97 (133)
T PF04892_consen 52 IDKIGHILLFFPLGFLLPLLFRRLR------SWLLAILIGFLFSLFIELIQL 97 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHHHHHhc
Confidence 4567777776655665555554321 113344555566666676533
No 135
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=24.28 E-value=59 Score=27.75 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=32.6
Q ss_pred cCCCCccchhhhcCCCeEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028400 65 SLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDEYRELVKDI 119 (209)
Q Consensus 65 ~~~~~~~~L~~LL~gs~i~~p~p~~~~~spEl~ArlekLr~~~eereY~~Mtk~v 119 (209)
.++..++++.+++.---+. . -.++....++..|++...++.++..|..|++-+
T Consensus 253 ~~p~~Rp~~~~il~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (307)
T cd06607 253 KIPQDRPSSEELLKHRFVL-R-ERPPTVIIDLIQRTKDAVRELDNLQYRKMKKIL 305 (307)
T ss_pred CChhhCcCHHHHhcChhhc-c-cCCcHHHHHHHHHHHHHhhhccccchhHHHHHh
Confidence 3677789999998753322 1 122223455556666666666666999998643
No 136
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=24.17 E-value=2.3e+02 Score=23.48 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 028400 170 AGGILGLVCGM 180 (209)
Q Consensus 170 ~~~i~glv~~l 180 (209)
+++++|++++.
T Consensus 35 l~~l~~~~~~~ 45 (199)
T PF10112_consen 35 LSLLIGAVAFA 45 (199)
T ss_pred HHHHHHHHHHH
Confidence 35555555543
No 137
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=23.34 E-value=4.2e+02 Score=23.25 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=18.9
Q ss_pred CCcccchh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 126 TEPFSSYK-DQLGFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 126 ~~~~~~~k-~ql~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
+.++.-.| +.++..++-++.++.++.+.|-+.+.++.
T Consensus 70 ~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~~l~~ 107 (299)
T PRK09509 70 EHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLIS 107 (299)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34454444 23555555555455555555555566554
No 138
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.07 E-value=1.5e+02 Score=26.51 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHhhhhhc
Q 028400 136 LGFGLHVVLIMFT--GYLVGYLAFRALF 161 (209)
Q Consensus 136 l~~v~n~lvtvfa--~F~~gy~~~~~~~ 161 (209)
+.-.+-++-++|+ +|++|+||-++=+
T Consensus 261 imk~LTi~s~iflPpTlIagiyGMNf~~ 288 (322)
T COG0598 261 IMKILTIVSTIFLPPTLITGFYGMNFKG 288 (322)
T ss_pred HHHHHHHHHHHHHhhHHHHcccccCCCC
Confidence 4444445556665 8889999988643
No 139
>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.
Probab=23.00 E-value=1.8e+02 Score=23.38 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 028400 164 STAMSAAGGILGLVCGMLVE 183 (209)
Q Consensus 164 ~~~~~~~~~i~glv~~l~~E 183 (209)
-+.-.++|.++|+++++++|
T Consensus 140 ~psDVlaG~~lG~~~~~~~~ 159 (159)
T cd03391 140 HVLDVLAGAFLGYLEALLVE 159 (159)
T ss_pred CHHHHHHHHHHHHHHHHhCC
Confidence 33334667777877777654
No 140
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=22.92 E-value=2.4e+02 Score=21.30 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 028400 146 MFTGYLVGY 154 (209)
Q Consensus 146 vfa~F~~gy 154 (209)
+++|++.|.
T Consensus 88 ~~aG~~aGa 96 (128)
T PF02466_consen 88 AIAGAAAGA 96 (128)
T ss_pred HHHHHHHHH
Confidence 334444444
No 141
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=22.80 E-value=2.4e+02 Score=18.75 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGF 138 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~ 138 (209)
..|+.+.+..||.+.-+-..+.-++... .+..++.+|+.+.=
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~~----~~~~i~~~Rk~IAR 48 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQLA----KPHRIRQVRRDIAR 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcc----cchHHHHHHHHHHH
Confidence 6789999999999999999888887775 34557788877643
No 142
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=22.66 E-value=4.5e+02 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=20.8
Q ss_pred CCcccchh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 126 TEPFSSYK-DQLGFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 126 ~~~~~~~k-~ql~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
+.++.-.| +.+...++-++.+++++...|-+.+.++.
T Consensus 49 ~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~ 86 (268)
T TIGR01297 49 RHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLIN 86 (268)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444 34555555555555666666666666664
No 143
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=22.62 E-value=1.3e+02 Score=22.81 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRA 159 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~ 159 (209)
+.=.--++.++.+|+.|++.+..
T Consensus 23 ~~~~DE~~~~~~~~~~Gi~~~~~ 45 (101)
T PRK13707 23 GLPLDELIPAAICIGWGITTSKY 45 (101)
T ss_pred eeeHHHHHHHHHHHHHHHHHchH
Confidence 33344455566678888776654
No 144
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=22.57 E-value=2.2e+02 Score=25.37 Aligned_cols=46 Identities=20% Similarity=0.044 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hhhcccc--hHHHHHHHHHHHHHHHHHHH
Q 028400 137 GFGLHVVLIMFTGYLVGYLAF----RALFSHS--TAMSAAGGILGLVCGMLVET 184 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~----~~~~~~~--~~~~~~~~i~glv~~l~~E~ 184 (209)
+.+.-|.+.||++++.+|+-. +|+=. + ..+.....++|.|.+ ++|.
T Consensus 194 GSIgaft~Gvf~c~vy~gyf~s~g~~~l~~-s~r~~~~~l~l~~g~vaA-lvEs 245 (269)
T KOG4453|consen 194 GSIGAFTFGVFICIVYLGYFSSLGPDYLHM-SWRETTLQLVLMVGMVAA-LVES 245 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCcchhcc-ccccchHHHHHHHHHHHH-HHhc
Confidence 555667788888888765443 23321 2 222344555555555 3575
No 145
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=22.54 E-value=51 Score=28.01 Aligned_cols=25 Identities=16% Similarity=0.277 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHhhhhh
Q 028400 136 LGFGLHVVLIMFT--GYLVGYLAFRAL 160 (209)
Q Consensus 136 l~~v~n~lvtvfa--~F~~gy~~~~~~ 160 (209)
..-.+-++.++|. +|++|+||-+.-
T Consensus 233 ~m~~LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 233 VMKVLTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 3344445555554 899999998765
No 146
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=22.53 E-value=2.7e+02 Score=19.21 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHHH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFG 139 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~v 139 (209)
..|+.+++..|+.+.-+-..+.-++.+. .+..++.+|+.|.=+
T Consensus 11 ~~eL~~~l~~lkkeL~~lR~~~~~~~~~----n~~~i~~~rk~IARi 53 (66)
T PRK00306 11 VEELNEKLLELKKELFNLRFQKATGQLE----NTHRLREVRRDIARI 53 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc----CcHHHHHHHHHHHHH
Confidence 6789999999999999988888777643 345577888776443
No 147
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=22.45 E-value=42 Score=31.34 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhh
Q 028400 147 FTGYLVGYLAFR 158 (209)
Q Consensus 147 fa~F~~gy~~~~ 158 (209)
+.||++|||+-|
T Consensus 383 lvGfLcWwf~cr 394 (397)
T PF03302_consen 383 LVGFLCWWFICR 394 (397)
T ss_pred HHHHHhhheeec
Confidence 349999999754
No 148
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=22.26 E-value=1.6e+02 Score=20.97 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 133 KDQLGFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 133 k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
|+|+..-.=+++.+.+.|++.+++.++++.
T Consensus 39 rke~~~~t~~Vl~~v~~~s~~~~~~D~l~~ 68 (73)
T COG0690 39 RKELIRSTLIVLVVVAFFSLFLYGLDQLIG 68 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655555666666777777788887765
No 149
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=22.17 E-value=3.4e+02 Score=25.95 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=39.4
Q ss_pred CHHHHHH-HHHHHHHHHHHHHHHhhccCCCCCCC--C--------Ccccchh-hhHHHHHHHHHHHHHHHHH
Q 028400 93 SEELKAR-LRQLAERAERDEYRELVKDILPKSSA--T--------EPFSSYK-DQLGFGLHVVLIMFTGYLV 152 (209)
Q Consensus 93 spEl~Ar-lekLr~~~eereY~~Mtk~v~~~~~~--~--------~~~~~~k-~ql~~v~n~lvtvfa~F~~ 152 (209)
|++.+.+ +++|+..+|.-.++.|+++..+.... . +....++ +.+-.+.|++.-+++..++
T Consensus 242 n~~qee~al~~l~~~EE~l~fd~li~~~p~~~~~~~~~~i~~kaieL~~~~n~~si~~i~nl~tDli~~~~f 313 (422)
T PRK02507 242 NPELEEEALEELRRFKEELEFEALLGLAPPLSPEEIEEKLKEKAEELAEEARYESLNAIKNVFADLFSLIAF 313 (422)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666533 89999999999999999997552211 0 1122333 3478888988866654444
No 150
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=22.03 E-value=1.6e+02 Score=28.43 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028400 167 MSAAGGILGLVCGMLVETLLF 187 (209)
Q Consensus 167 ~~~~~~i~glv~~l~~E~~lf 187 (209)
+|+..+++|.+|+.++..+++
T Consensus 130 ~R~~ei~iGi~~a~~v~~l~~ 150 (650)
T PF04632_consen 130 WRVLEILIGILCATLVSMLFF 150 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 567788889999888776544
No 151
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.99 E-value=1.4e+02 Score=25.84 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=36.6
Q ss_pred CccchhhhcCCCeEEecCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhhc
Q 028400 69 IRPDLFRLFSGSEFVFTSPKPRE-KSEELKARLRQLAERAERDEYRELVK 117 (209)
Q Consensus 69 ~~~~L~~LL~gs~i~~p~p~~~~-~spEl~ArlekLr~~~eereY~~Mtk 117 (209)
..+++.+. .|...+++...|+. |.|||..++-+.|-..|.|--.++-.
T Consensus 10 a~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~ 58 (204)
T COG3642 10 AIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKARE 58 (204)
T ss_pred eeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 56668888888888 79999999999999999887766655
No 152
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=21.87 E-value=3.8e+02 Score=20.71 Aligned_cols=23 Identities=13% Similarity=0.460 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 028400 94 EELKARLRQLAERAERDEYRELVKDILP 121 (209)
Q Consensus 94 pEl~ArlekLr~~~eereY~~Mtk~v~~ 121 (209)
.+..+|++||....+ .|.+..++
T Consensus 34 ~pi~Eqi~kLe~~vd-----dl~~sldP 56 (108)
T COG4062 34 DPIEEQIKKLETLVD-----DLENSLDP 56 (108)
T ss_pred cHHHHHHHHHHHHHH-----HHHhccCC
Confidence 345677888877665 35555554
No 153
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=21.83 E-value=2.5e+02 Score=20.45 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028400 141 HVVLIMFTGYLVGYLAFR 158 (209)
Q Consensus 141 n~lvtvfa~F~~gy~~~~ 158 (209)
.+++.+.+++++|++.+.
T Consensus 11 ~l~~~~l~~~lvG~~~g~ 28 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGH 28 (90)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 334444555556655543
No 154
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=21.76 E-value=2.9e+02 Score=23.94 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=7.3
Q ss_pred HHHHHHHhhhhhc
Q 028400 149 GYLVGYLAFRALF 161 (209)
Q Consensus 149 ~F~~gy~~~~~~~ 161 (209)
.|+..|+..++.-
T Consensus 141 my~my~y~yr~~a 153 (226)
T COG4858 141 MYIMYYYAYRMRA 153 (226)
T ss_pred HHHHHHHHHHhhc
Confidence 3445566666654
No 155
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=21.65 E-value=2.3e+02 Score=29.00 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 028400 169 AAGGILGLVCGML 181 (209)
Q Consensus 169 ~~~~i~glv~~l~ 181 (209)
..++++|++.|++
T Consensus 353 f~~~~~Gl~~g~l 365 (730)
T PLN02277 353 ALCGLVGIITAYA 365 (730)
T ss_pred HHHHHHHHHHHHH
Confidence 5677777777654
No 156
>PF14476 Chloroplast_duf: Petal formation-expressed
Probab=21.22 E-value=3.5e+02 Score=24.72 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=11.5
Q ss_pred CHHHHHHHHHH---HHHHHHHHHHHhhc
Q 028400 93 SEELKARLRQL---AERAERDEYRELVK 117 (209)
Q Consensus 93 spEl~ArlekL---r~~~eereY~~Mtk 117 (209)
|.||+..|.+. -+..+..+|.++=+
T Consensus 174 s~eLE~EmReVv~VlK~KD~edY~rlg~ 201 (313)
T PF14476_consen 174 SEELEEEMREVVEVLKRKDEEDYLRLGN 201 (313)
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56666554332 12223455665543
No 157
>PF08165 FerA: FerA (NUC095) domain; InterPro: IPR012560 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain A in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=21.17 E-value=84 Score=22.05 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=33.4
Q ss_pred ChHHHHHHHhhcCCCCccchhhhcCCCeEEecCCCCCCCCHHHHHHHHHHHHHH
Q 028400 54 PYKSIRQIWVGSLPSIRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERA 107 (209)
Q Consensus 54 p~~~l~~l~~~~~~~~~~~L~~LL~gs~i~~p~p~~~~~spEl~ArlekLr~~~ 107 (209)
|-..+-.+|.. -|.+|+++++=.+|....+|..-+|..++-+||...
T Consensus 8 ~~~~l~~~~~~-------lLdqlIeD~~~pLP~~~~~~~~t~LD~~l~~lR~~~ 54 (66)
T PF08165_consen 8 SEEELAELWLK-------LLDQLIEDCSKPLPSLEGKPNATELDRQLRKLRSRH 54 (66)
T ss_pred CHHHHHHHHHH-------HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34444555543 356888888878888888888889988888877643
No 158
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=20.99 E-value=1.5e+02 Score=17.85 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 028400 140 LHVVLIMFTGYLVGYLAFRA 159 (209)
Q Consensus 140 ~n~lvtvfa~F~~gy~~~~~ 159 (209)
.+|++..+.+|..|+++.+.
T Consensus 5 ~Qi~iAL~~Al~~~iLA~rL 24 (30)
T CHL00190 5 SQIFIALFLALTTGILAIRL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766553
No 159
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=20.94 E-value=2.7e+02 Score=20.72 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 028400 167 MSAAGGILGLVCGML 181 (209)
Q Consensus 167 ~~~~~~i~glv~~l~ 181 (209)
++.+.|...+++|++
T Consensus 67 WN~~IGfg~~~~Gf~ 81 (87)
T PF06781_consen 67 WNLAIGFGLMIVGFL 81 (87)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566666666666654
No 160
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=20.88 E-value=2.4e+02 Score=27.22 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 028400 96 LKARLRQLAERAERDEYRELVKDIL 120 (209)
Q Consensus 96 l~ArlekLr~~~eereY~~Mtk~v~ 120 (209)
+.+-+|-+--+-.+..|++|+|-..
T Consensus 32 ~lai~e~~~~~t~d~~y~~~tkfw~ 56 (457)
T COG1271 32 MLAIMETLYVKTKDEIYKRMTKFWG 56 (457)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 4456777777777888999988543
No 161
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.84 E-value=1.1e+02 Score=26.51 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 134 DQLGFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 134 ~ql~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
+-.-.++|++|+|++ -++.+++...+|+
T Consensus 10 RK~N~iLNiaI~IV~-lLIiiva~~lf~~ 37 (217)
T PF07423_consen 10 RKTNKILNIAIGIVS-LLIIIVAYQLFFG 37 (217)
T ss_pred hhhhhhHHHHHHHHH-HHHHHHhhhheec
Confidence 345678888887776 4445555555564
No 162
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=20.59 E-value=1.9e+02 Score=23.41 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 028400 168 SAAGGILGLVCGM 180 (209)
Q Consensus 168 ~~~~~i~glv~~l 180 (209)
.+++|++|+++|+
T Consensus 28 ~~~~g~~~~~i~f 40 (206)
T PF00924_consen 28 LASLGVLGLAIGF 40 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555665554
No 163
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.56 E-value=1.9e+02 Score=25.33 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhhcc
Q 028400 143 VLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 143 lvtvfa~F~~gy~~~~~~~~ 162 (209)
++.+.-||++|-+..-.+++
T Consensus 40 ~v~v~ig~l~~~~~~~~i~g 59 (224)
T PF13829_consen 40 AVFVLIGLLFGSWWYWLIIG 59 (224)
T ss_pred HHHHHHHHHHccHHHHHHHH
Confidence 33444455555444444444
No 164
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=20.39 E-value=3.3e+02 Score=24.28 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhh
Q 028400 145 IMFTGYLVGYLAFRA 159 (209)
Q Consensus 145 tvfa~F~~gy~~~~~ 159 (209)
-.++.++++|+...+
T Consensus 233 ~~i~~~~f~~Yv~~~ 247 (303)
T COG1295 233 FELGKYLFGYYLSNF 247 (303)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334455556655553
No 165
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=20.22 E-value=4.5e+02 Score=20.90 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 028400 133 KDQLGFGLHVVLIMFTGYLVGYLAFRALFSHSTAMSAAGGILGLVCGMLVETLLFIIRSSN 193 (209)
Q Consensus 133 k~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~~~~~~~~i~glv~~l~~E~~lfiiR~~~ 193 (209)
+.+.+.++-.+++++.++++++... .+++-.......-++--+++++-+|-.+.+++...
T Consensus 3 ~S~~~L~~~~i~~v~~s~~~a~~i~-~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~ 62 (153)
T PF12349_consen 3 GSRFWLGLAGIVSVAFSVLFALGIC-SLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVR 62 (153)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4455566666666666555555433 23442222222223333444554566666666554
No 166
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=20.15 E-value=97 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 028400 143 VLIMFTGYLVGYLAFRALF 161 (209)
Q Consensus 143 lvtvfa~F~~gy~~~~~~~ 161 (209)
|++.+.+|++|+++|.++.
T Consensus 3 ii~~i~~~~vG~~~G~~~~ 21 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566667776666653
No 167
>PRK03557 zinc transporter ZitB; Provisional
Probab=20.09 E-value=6.1e+02 Score=22.53 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=21.2
Q ss_pred CCcccchh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 126 TEPFSSYK-DQLGFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 126 ~~~~~~~k-~ql~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
+.++.-.| +-++..+|-++.+++++...|-+.+.++.
T Consensus 78 ~hpyG~~r~E~l~al~~~~~l~~~~~~i~~eai~~l~~ 115 (312)
T PRK03557 78 RHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRT 115 (312)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34554445 33566666666566666666666666655
No 168
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=20.03 E-value=2.7e+02 Score=27.46 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 028400 168 SAAGGILGLVCGMLVETLLFIIRSSNHDNKS 198 (209)
Q Consensus 168 ~~~~~i~glv~~l~~E~~lfiiR~~~~~~~~ 198 (209)
.++++.+++++|++ --+|=-.|..+.+.+.
T Consensus 614 ~~~a~~~s~~vGl~-~GlyPA~rAa~l~Pie 643 (648)
T PRK10535 614 LLSAFLCSTVTGIL-FGWLPARNAARLDPVD 643 (648)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHhCCCHHH
Confidence 35666677777764 3457778888777643
Done!