Query 028400
Match_columns 209
No_of_seqs 119 out of 131
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l35_A DAP12-NKG2C_TM; immunor 78.7 1.5 5.2E-05 29.8 2.9 22 137-158 12-33 (63)
2 2lx0_A Membrane fusion protein 75.0 3 0.0001 24.0 3.0 23 138-160 7-29 (32)
3 2qts_A Acid-sensing ION channe 53.2 10 0.00035 33.6 3.7 24 168-191 407-434 (438)
4 2oa5_A Hypothetical protein BQ 49.5 41 0.0014 25.2 5.9 46 89-136 6-51 (110)
5 3qbr_A SJA, sjchgc06286 protei 37.3 76 0.0026 25.6 6.2 90 69-162 37-138 (179)
6 3qwl_A TBC1 domain family memb 35.8 23 0.00078 30.4 3.0 41 39-79 24-66 (294)
7 3udc_A Small-conductance mecha 34.1 1.1E+02 0.0039 25.5 7.2 16 167-182 95-110 (285)
8 4hw4_A Induced myeloid leukemi 32.3 34 0.0012 26.8 3.2 50 72-121 15-67 (157)
9 4ev6_A Magnesium transport pro 31.6 38 0.0013 29.1 3.8 24 136-159 278-303 (339)
10 2lk9_A Bone marrow stromal ant 31.1 45 0.0015 19.9 2.8 15 179-193 19-33 (35)
11 4aq3_A Apoptosis regulator BCL 29.1 2.1E+02 0.0071 22.4 8.1 71 91-162 50-125 (169)
12 2iub_A CORA, divalent cation t 27.2 32 0.0011 29.9 2.5 25 136-160 302-328 (363)
13 3j1z_P YIIP, cation efflux fam 27.1 1.2E+02 0.0042 25.5 6.2 40 126-165 72-112 (306)
14 3v2d_2 50S ribosomal protein L 26.6 1.4E+02 0.0047 20.3 5.2 44 93-140 18-61 (72)
15 2dpr_A CON-T(K7GLA); conantoxi 25.5 13 0.00043 20.5 -0.3 11 109-119 2-12 (26)
16 2k1k_A Ephrin type-A receptor 24.6 83 0.0028 18.9 3.3 11 169-179 13-23 (38)
17 2vv5_A MSCS, small-conductance 22.5 2.2E+02 0.0075 23.7 6.9 15 167-181 96-110 (286)
18 1ohu_A Apoptosis regulator CED 22.3 1.4E+02 0.0048 23.6 5.2 29 92-121 42-73 (175)
19 3r8s_Y 50S ribosomal protein L 20.7 1.3E+02 0.0046 19.7 4.1 43 93-139 11-53 (63)
20 2v6x_B DOA4-independent degrad 20.7 38 0.0013 22.0 1.3 15 92-106 39-53 (54)
No 1
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=78.69 E-value=1.5 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFR 158 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~ 158 (209)
..+.+++.|++-+.+++||.++
T Consensus 12 IIv~DIi~TllLal~VY~~A~~ 33 (63)
T 2l35_A 12 IVVGDLVLTVLIALAVYFLGRL 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHHHHHHhhccc
Confidence 4567788888889999999887
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=74.97 E-value=3 Score=24.02 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 028400 138 FGLHVVLIMFTGYLVGYLAFRAL 160 (209)
Q Consensus 138 ~v~n~lvtvfa~F~~gy~~~~~~ 160 (209)
-++.=++.+.+..+||||+..|+
T Consensus 7 eviaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 7 EVIAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777888899988875
No 3
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=53.16 E-value=10 Score=33.59 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHhhc
Q 028400 168 SAAGGILGLVCGM----LVETLLFIIRS 191 (209)
Q Consensus 168 ~~~~~i~glv~~l----~~E~~lfiiR~ 191 (209)
.-.||++||.+|+ ++|+++|+++-
T Consensus 407 s~~GG~~GLflG~S~ls~~Ei~~~~~~~ 434 (438)
T 2qts_A 407 GDIGGQMGLFIGASILTVLELFDYAYEV 434 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHHHHhcchHHHHHHHHHHHHHH
Confidence 3568999998876 78999998764
No 4
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=49.46 E-value=41 Score=25.15 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhH
Q 028400 89 PREKSEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQL 136 (209)
Q Consensus 89 ~~~~spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql 136 (209)
|.+.-+||.|+++||+ .||+.-++-++........+..+..-+++.
T Consensus 6 ~~~t~EeLaaeL~kLq--mENK~LKkkl~~~g~~~p~d~~LTp~qKea 51 (110)
T 2oa5_A 6 PDKTYEEMVKEVERLK--LENKTLKQKVKSSGAVSSDDSILTAAKRES 51 (110)
T ss_dssp CCSSHHHHHHHHHHHH--HHHHHHHHTC---------CCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCCccCCHHHHHH
Confidence 3345678999999986 688999888887633334455566666664
No 5
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=37.28 E-value=76 Score=25.59 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=48.5
Q ss_pred CccchhhhcCCCeEEecCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHhhccC----CCCCCCC-------CcccchhhhH
Q 028400 69 IRPDLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAERDE-YRELVKDI----LPKSSAT-------EPFSSYKDQL 136 (209)
Q Consensus 69 ~~~~L~~LL~gs~i~~p~p~~~~~spEl~ArlekLr~~~eere-Y~~Mtk~v----~~~~~~~-------~~~~~~k~ql 136 (209)
+.=|+..|+..+.|-+| .-|...+....|.++=.+.+.+. +++|..++ +...... ..|.++-+.+
T Consensus 37 ~~~~~~~~~~~~~~~l~---~dp~~~~v~~~L~~iGDEle~r~e~q~ml~~l~~ql~~~~~~~lt~~tA~~~F~~Va~eL 113 (179)
T 3qbr_A 37 DTDYLTDLLDNTNIDLT---CVPNGQEIIHSLLQLVGDFNQRFSQTHEIEPVAQSLGIDSDKPVDKTALEIFYLEILNGL 113 (179)
T ss_dssp HHHHHHHHHHHHTCCCC---CCTTHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHTCSSSSCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHcCCCCCCC---CCCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhccccccCCCchHHHHHHHHHHHHH
Confidence 34677788877666554 22446677777888777777651 36677665 2211111 1122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 137 GFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 137 ~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
--|+|- ==|++.|+||+.+......
T Consensus 114 FDGiNW-GRIVaLfaFgg~La~~~~~ 138 (179)
T 3qbr_A 114 FEKLNW-GRIVAMFAFLRILVLRLSK 138 (179)
T ss_dssp TSSCCH-HHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 222220 0256778888888777665
No 6
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=35.81 E-value=23 Score=30.39 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCCCChHHHHHH-HhhcCC-CCccchhhhcCC
Q 028400 39 ELRETALNLSSLNKAPYKSIRQI-WVGSLP-SIRPDLFRLFSG 79 (209)
Q Consensus 39 ~Lr~~~~~~L~~~~Ip~~~l~~l-~~~~~~-~~~~~L~~LL~g 79 (209)
+.+...+.+|+++.|+...|+.+ |..--| .-++..+.+|.|
T Consensus 24 ~~k~~~~~ll~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlG 66 (294)
T 3qwl_A 24 EEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLG 66 (294)
T ss_dssp HHHHHHHHHTTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56788899999999999999998 443122 246789999999
No 7
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=34.14 E-value=1.1e+02 Score=25.47 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 028400 167 MSAAGGILGLVCGMLV 182 (209)
Q Consensus 167 ~~~~~~i~glv~~l~~ 182 (209)
..+..|++|+++|+++
T Consensus 95 l~a~~g~~g~aig~a~ 110 (285)
T 3udc_A 95 LLAVAGIGSLAIGFGA 110 (285)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777888887643
No 8
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=32.30 E-value=34 Score=26.75 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=28.3
Q ss_pred chhhhcCCCeEEecCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhhccCCC
Q 028400 72 DLFRLFSGSEFVFTSPKPREKSEELKARLRQLAERAER---DEYRELVKDILP 121 (209)
Q Consensus 72 ~L~~LL~gs~i~~p~p~~~~~spEl~ArlekLr~~~ee---reY~~Mtk~v~~ 121 (209)
|||+-+.|..=--|.+++.|.+.+..+.|.++=.+.|+ +.|+.|.+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr~vgdele~~~~~~f~~m~~~L~i 67 (157)
T 4hw4_A 15 YLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDI 67 (157)
T ss_dssp HHHHHHHSCCCCSCCCSSHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCC
T ss_pred HHHHHhcCccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555555443334344444455555666666666554 468888887654
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.65 E-value=38 Score=29.13 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHhhhh
Q 028400 136 LGFGLHVVLIMFT--GYLVGYLAFRA 159 (209)
Q Consensus 136 l~~v~n~lvtvfa--~F~~gy~~~~~ 159 (209)
+.-.+-++.++|+ +|++|+||-+.
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 3444555555554 88999999885
No 10
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=31.12 E-value=45 Score=19.86 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhcCC
Q 028400 179 GMLVETLLFIIRSSN 193 (209)
Q Consensus 179 ~l~~E~~lfiiR~~~ 193 (209)
++.+-+++|++|.++
T Consensus 19 ~LgV~LI~f~~kAns 33 (35)
T 2lk9_A 19 ILGVPLIIFTIKKKK 33 (35)
T ss_dssp HHHHHHHHHC-----
T ss_pred HhcchheEEeeeccc
Confidence 555667888888765
No 11
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=29.15 E-value=2.1e+02 Score=22.42 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCC-CCCcccchhhhH-HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 91 EKSEELKARLRQLAERAERD---EYRELVKDILPKSS-ATEPFSSYKDQL-GFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 91 ~~spEl~ArlekLr~~~eer---eY~~Mtk~v~~~~~-~~~~~~~~k~ql-~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
+..++.-+-|.++=++.|++ .|+.|.+.+....+ ..+.|..+-+++ .-|+|- ==|++.|+||+.+......
T Consensus 50 ~~~~~v~~~Lr~igdele~~~~~~f~~~~~~L~it~~~a~~~F~~Va~elF~dGiNW-GRIVaLfaF~g~La~~~~~ 125 (169)
T 4aq3_A 50 TESEVVHLALRQAGDDFSRRYRGDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNW-GRIVAFFEFGGVMCVESVN 125 (169)
T ss_dssp ----CHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCTTTHHHHHHHHHHHHTTTCCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666654 68888887653222 112233322222 112220 0255666666666555443
No 12
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=27.21 E-value=32 Score=29.93 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHHhhhhh
Q 028400 136 LGFGLHVVLIMFT--GYLVGYLAFRAL 160 (209)
Q Consensus 136 l~~v~n~lvtvfa--~F~~gy~~~~~~ 160 (209)
+.-.+-++.++|+ +|++|+||-++-
T Consensus 302 imk~LTiit~IflP~T~IaGiyGMNf~ 328 (363)
T 2iub_A 302 VMKVLTIIATIFMPLTFIAGIYGMNFE 328 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 4445556666665 889999998853
No 13
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=27.15 E-value=1.2e+02 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=21.8
Q ss_pred CCcccchh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcccch
Q 028400 126 TEPFSSYK-DQLGFGLHVVLIMFTGYLVGYLAFRALFSHST 165 (209)
Q Consensus 126 ~~~~~~~k-~ql~~v~n~lvtvfa~F~~gy~~~~~~~~~~~ 165 (209)
+.++.--| +.++..+|-++.+++++...|-+.+.++...+
T Consensus 72 ~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~ 112 (306)
T 3j1z_P 72 DHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSP 112 (306)
T ss_dssp TTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCC
Confidence 34443334 34666677666556665556666665554333
No 14
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=26.56 E-value=1.4e+02 Score=20.30 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHHHH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGL 140 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~v~ 140 (209)
.+||.+++..|+.++-+-..+.-|.... .+..++.+|+.+.=+.
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~atgql~----n~~~ir~vRr~IARi~ 61 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQASIGQLS----QNHKIRDLKRQIARLL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC----CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHH
Confidence 6789999999999999999999888764 3455777787765443
No 15
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=25.52 E-value=13 Score=20.46 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=8.2
Q ss_pred HHHHHHhhccC
Q 028400 109 RDEYRELVKDI 119 (209)
Q Consensus 109 ereY~~Mtk~v 119 (209)
+.||+.|..|.
T Consensus 2 eeeyqemlenl 12 (26)
T 2dpr_A 2 EEEYQEMLENL 12 (26)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 36788888775
No 16
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.62 E-value=83 Score=18.86 Aligned_cols=11 Identities=36% Similarity=0.606 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 028400 169 AAGGILGLVCG 179 (209)
Q Consensus 169 ~~~~i~glv~~ 179 (209)
.+|.++|.++|
T Consensus 13 IAGiVvG~v~g 23 (38)
T 2k1k_A 13 IVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeeehHHHHH
Confidence 34455555543
No 17
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=22.55 E-value=2.2e+02 Score=23.74 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 028400 167 MSAAGGILGLVCGML 181 (209)
Q Consensus 167 ~~~~~~i~glv~~l~ 181 (209)
..+..|++|+++|++
T Consensus 96 l~a~~g~~g~aig~a 110 (286)
T 2vv5_A 96 VIAVLGAAGLVVGLA 110 (286)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777777763
No 18
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=22.27 E-value=1.4e+02 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHH---HHHHHHhhccCCC
Q 028400 92 KSEELKARLRQLAERAE---RDEYRELVKDILP 121 (209)
Q Consensus 92 ~spEl~ArlekLr~~~e---ereY~~Mtk~v~~ 121 (209)
+++... .|.++=.+.| +++|+.|.+.+..
T Consensus 42 ~~~~~~-~Lr~vgdelE~~~~~~f~~m~~qL~i 73 (175)
T 1ohu_A 42 VQPEHE-MMRVMGTIFEKKHAENFETFSEQLLA 73 (175)
T ss_dssp CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344333 3444444443 6889999998754
No 19
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=20.73 E-value=1.3e+02 Score=19.74 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHHH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFG 139 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~v 139 (209)
.+||.+++..|+.++-+-..+.-|.... .+..++.+++.+.=+
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~atgql~----n~~~ir~vRr~IARi 53 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAASGQLQ----QSHLLKQVRRDVARV 53 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTCCS----CGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc----CcHHHHHHHHHHHHH
Confidence 6789999999999999999999886543 345577777776433
No 20
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.67 E-value=38 Score=22.04 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHH
Q 028400 92 KSEELKARLRQLAER 106 (209)
Q Consensus 92 ~spEl~ArlekLr~~ 106 (209)
...+|.|||..||++
T Consensus 39 ~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 39 PDDDLQARLNTLKKQ 53 (54)
T ss_dssp CCHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHhccC
Confidence 478999999999963
Done!