Query 028400
Match_columns 209
No_of_seqs 119 out of 131
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 18:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028400.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028400hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2okua1 a.48.5.1 (A:443-564) U 46.0 25 0.0018 24.9 6.1 61 90-160 25-85 (122)
2 d2oa5a1 d.362.1.1 (A:7-102) Un 32.1 55 0.004 22.1 5.9 41 94-136 5-45 (96)
3 d1ohua_ f.1.4.1 (A:) Apoptosis 29.9 95 0.0069 22.5 7.7 33 87-120 34-69 (172)
4 d2zjrv1 a.2.2.1 (V:1-66) Ribos 28.9 30 0.0022 21.6 3.7 44 93-140 11-54 (66)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 26.5 71 0.0052 20.0 6.1 16 167-182 70-85 (86)
6 d1zy3a1 f.1.4.1 (A:1-170) Apop 23.3 54 0.0039 23.9 4.9 71 91-162 36-111 (170)
7 d1kp0a1 c.55.2.1 (A:1-156) Cre 20.6 32 0.0023 23.7 2.9 23 93-115 21-43 (156)
8 d1jt6a2 a.121.1.1 (A:73-187) M 19.4 26 0.0019 24.1 2.1 55 92-154 36-91 (115)
9 d1chma1 c.55.2.1 (A:2-156) Cre 18.0 34 0.0025 23.6 2.6 23 92-114 19-41 (155)
10 d1ydla1 d.295.1.1 (A:6-71) Gen 16.6 1.2E+02 0.0085 18.9 4.7 21 13-33 1-21 (66)
No 1
>d2okua1 a.48.5.1 (A:443-564) Uncharacterized protein PG0775 {Porphyromonas gingivalis [TaxId: 837]}
Probab=46.02 E-value=25 Score=24.90 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 028400 90 REKSEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGYLAFRAL 160 (209)
Q Consensus 90 ~~~spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~v~n~lvtvfa~F~~gy~~~~~~ 160 (209)
-|.+||+.+.+++|....+ .|.++|+.|..+.+. .-+=|.+-=|+=|.+-.++||.+.+..
T Consensus 25 ~~~~pEl~~lk~rl~~m~~--r~ea~v~~V~E~kdq--------el~Df~ARRLvEma~h~i~~~LLl~~A 85 (122)
T d2okua1 25 TEVKPELQPMKEALARMTD--RAEALIAFVTEQKDQ--------ELLDFQARRLVEMTAHAVFGHLLMLAA 85 (122)
T ss_dssp CCCCGGGHHHHHHHHHHHH--HHHHHHHHHHTTCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4569999999999988765 799999999754331 113455556677778778888777654
No 2
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=32.10 E-value=55 Score=22.12 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhH
Q 028400 94 EELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQL 136 (209)
Q Consensus 94 pEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql 136 (209)
+||.|+++||+ .||+.-++-++.-++....+..+..-.++.
T Consensus 5 EeLaaeL~rL~--~ENk~LKkkl~~~~~~~~~d~~LT~~qke~ 45 (96)
T d2oa5a1 5 EEMVKEVERLK--LENKTLKQKVKSSGAVSSDDSILTAAKRES 45 (96)
T ss_dssp HHHHHHHHHHH--HHHHHHHHTC---------CCBCCHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCCccCCHHHHHH
Confidence 57999999986 678888888876433223344555545553
No 3
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=29.87 E-value=95 Score=22.54 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=18.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHH---HHHHHHHhhccCC
Q 028400 87 PKPREKSEELKARLRQLAERA---ERDEYRELVKDIL 120 (209)
Q Consensus 87 p~~~~~spEl~ArlekLr~~~---eereY~~Mtk~v~ 120 (209)
|.|++.+|+... |.++=.+. ..+.|+.|.+.+.
T Consensus 34 ~~p~~~~~~~~~-Lr~vg~elE~~h~~~f~~~~~qL~ 69 (172)
T d1ohua_ 34 GLPSGVQPEHEM-MRVMGTIFEKKHAENFETFSEQLL 69 (172)
T ss_dssp CCTTCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445676533 44444443 3357899998654
No 4
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.89 E-value=30 Score=21.56 Aligned_cols=44 Identities=0% Similarity=0.025 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccchhhhHHHHH
Q 028400 93 SEELKARLRQLAERAERDEYRELVKDILPKSSATEPFSSYKDQLGFGL 140 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~Mtk~v~~~~~~~~~~~~~k~ql~~v~ 140 (209)
.+||.+.+..|+.++-+-..+..+..+.. +..++.+|+++.=+.
T Consensus 11 ~~eL~~~l~~lk~elf~LRfq~~tgql~n----~~~ik~~Rk~IARi~ 54 (66)
T d2zjrv1 11 ATDFAKEIDARKKELMELRFQAAAGQLAQ----PHRVRQLRREVAQLN 54 (66)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcc----hHHHHHHHHHHHHHH
Confidence 68899999999999999999999987653 345777887764443
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=26.49 E-value=71 Score=19.98 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 028400 167 MSAAGGILGLVCGMLV 182 (209)
Q Consensus 167 ~~~~~~i~glv~~l~~ 182 (209)
.-+..|+.|+.+|+.+
T Consensus 70 l~a~~G~~gvaiGfa~ 85 (86)
T d2vv5a3 70 VIAVLGAAGLVVGLAL 85 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4477888899888753
No 6
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.31 E-value=54 Score=23.89 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCCC-CCcccchhhhH-HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 028400 91 EKSEELKARLRQLAERAER---DEYRELVKDILPKSSA-TEPFSSYKDQL-GFGLHVVLIMFTGYLVGYLAFRALFS 162 (209)
Q Consensus 91 ~~spEl~ArlekLr~~~ee---reY~~Mtk~v~~~~~~-~~~~~~~k~ql-~~v~n~lvtvfa~F~~gy~~~~~~~~ 162 (209)
|...+..+.|.++=.+.|+ +.|+.|.+.+.-..+. .+.|..+-+++ .-|+|-= =+++.|+||+.+......
T Consensus 36 ~~~~~~~~~Lr~vgdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dginWG-RIVal~~F~g~la~~~~~ 111 (170)
T d1zy3a1 36 PAADPLHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWG-RLVAFFVFGAALCAESVN 111 (170)
T ss_dssp CCSCHHHHHHHHHTTHHHHHHSCHHHHHHHHTCSSCCCSHHHHHHHHHHHHTTCCCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHH
Confidence 3444555557777666654 4589999876532222 23344443333 1222210 145667777777766554
No 7
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]}
Probab=20.55 E-value=32 Score=23.72 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 028400 93 SEELKARLRQLAERAERDEYREL 115 (209)
Q Consensus 93 spEl~ArlekLr~~~eereY~~M 115 (209)
..||++|++|||+.-+++.-+.+
T Consensus 21 ~~E~~~R~~klr~~M~e~~iDal 43 (156)
T d1kp0a1 21 ZAEMTRRZBRLRAWMAKSBIDAV 43 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEE
Confidence 56899999999999887754433
No 8
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=19.37 E-value=26 Score=24.07 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Q 028400 92 KSEELKARLRQLAERAERDEYRELVKD-ILPKSSATEPFSSYKDQLGFGLHVVLIMFTGYLVGY 154 (209)
Q Consensus 92 ~spEl~ArlekLr~~~eereY~~Mtk~-v~~~~~~~~~~~~~k~ql~~v~n~lvtvfa~F~~gy 154 (209)
.+||+.+++.++++..++ -++++++. +. ++.|+.. .......++++++.+-..||
T Consensus 36 ~~~e~~~~i~~lr~~y~~-~~~~Ii~eGi~-----~G~f~~~--d~~~~~~~il~~lng~~~Wy 91 (115)
T d1jt6a2 36 KTNSINEKMNKLENKYID-AYHVIFKEGNL-----NGEWSIN--DVNAVSKIAANAVNGIVTFT 91 (115)
T ss_dssp TCHHHHHHHHHHHHHHHH-HHHHHHHHHHT-----TTSCCCS--CHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----CCceecc--CHHHHHHHHHHHHHHHHHHh
Confidence 489999988888655542 23333332 22 2233322 24566666666666544443
No 9
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=17.98 E-value=34 Score=23.61 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 028400 92 KSEELKARLRQLAERAERDEYRE 114 (209)
Q Consensus 92 ~spEl~ArlekLr~~~eereY~~ 114 (209)
...||+.|++|||+..+++.-..
T Consensus 19 s~~E~~~Rl~klr~~m~~~giDa 41 (155)
T d1chma1 19 SAQEYANRQARLRAHLAAENIDA 41 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCE
Confidence 36799999999999988775443
No 10
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.57 E-value=1.2e+02 Score=18.86 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=18.1
Q ss_pred cceeEeeCHHHHHHHHHhhcC
Q 028400 13 SGLIISNNDSIRSFLLSASED 33 (209)
Q Consensus 13 ~gl~i~~T~~Ir~~L~~a~~~ 33 (209)
.|+.|+-.|+++.||-.+.+.
T Consensus 1 KGvLv~CDp~~Kq~il~ld~~ 21 (66)
T d1ydla1 1 KGMLIECDPAMKQFLLYLDES 21 (66)
T ss_dssp CCEEEECCHHHHHHHHHHHHT
T ss_pred CcEEEEcCHHHHHHHHHhccC
Confidence 389999999999999988655
Done!