Query 028401
Match_columns 209
No_of_seqs 115 out of 245
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 6.7E-78 1.5E-82 566.5 17.2 180 6-209 1-183 (478)
2 PF06305 DUF1049: Protein of u 79.4 10 0.00023 26.2 6.4 47 16-62 18-64 (68)
3 PF07219 HemY_N: HemY protein 79.3 5 0.00011 30.8 5.2 46 12-57 13-65 (108)
4 PRK11677 hypothetical protein; 78.8 4.9 0.00011 33.0 5.2 60 15-78 2-70 (134)
5 COG1033 Predicted exporters of 77.3 5.9 0.00013 40.6 6.3 55 20-74 252-317 (727)
6 TIGR02976 phageshock_pspB phag 65.2 27 0.00058 26.1 5.9 29 15-43 3-31 (75)
7 TIGR00540 hemY_coli hemY prote 62.3 15 0.00034 33.8 5.2 37 12-48 38-81 (409)
8 TIGR03144 cytochr_II_ccsB cyto 61.1 46 0.00099 29.0 7.6 30 50-79 142-171 (243)
9 PRK10747 putative protoheme IX 59.0 18 0.00038 33.4 4.9 37 12-48 38-81 (398)
10 PF12801 Fer4_5: 4Fe-4S bindin 58.4 19 0.00041 23.4 3.7 25 14-38 1-25 (48)
11 PF01578 Cytochrom_C_asm: Cyto 56.7 44 0.00095 28.0 6.6 31 49-79 115-145 (214)
12 COG3105 Uncharacterized protei 53.2 31 0.00067 28.7 4.9 61 14-78 6-75 (138)
13 PF11044 TMEMspv1-c74-12: Plec 50.9 42 0.0009 23.2 4.4 26 14-40 2-33 (49)
14 PF05568 ASFV_J13L: African sw 50.7 38 0.00083 29.0 5.2 44 12-57 22-65 (189)
15 TIGR00921 2A067 The (Largely A 50.5 73 0.0016 31.4 7.9 56 17-72 620-685 (719)
16 PHA03105 EEV glycoprotein; Pro 47.6 21 0.00045 30.8 3.1 33 18-50 9-41 (188)
17 COG3071 HemY Uncharacterized e 44.4 44 0.00095 32.3 5.1 47 13-59 39-96 (400)
18 PF12273 RCR: Chitin synthesis 42.4 18 0.00038 28.7 1.9 17 16-32 2-18 (130)
19 PF03176 MMPL: MMPL family; I 41.7 45 0.00098 29.6 4.6 51 24-74 208-269 (333)
20 PF01102 Glycophorin_A: Glycop 40.6 30 0.00065 28.1 2.9 7 30-36 82-88 (122)
21 PRK02935 hypothetical protein; 40.0 69 0.0015 25.8 4.8 43 13-73 12-54 (110)
22 PF14015 DUF4231: Protein of u 38.4 1.1E+02 0.0023 22.9 5.6 42 17-64 53-94 (112)
23 TIGR03480 HpnN hopanoid biosyn 37.1 1.4E+02 0.003 30.8 7.7 56 20-75 325-391 (862)
24 PF13297 Telomere_Sde2_2: Telo 36.1 20 0.00043 26.0 1.1 13 55-67 17-29 (60)
25 PF15444 TMEM247: Transmembran 35.8 44 0.00096 29.4 3.4 23 167-189 193-215 (218)
26 PF11742 DUF3302: Protein of u 35.1 1.4E+02 0.003 22.6 5.6 33 34-73 21-53 (78)
27 PF15050 SCIMP: SCIMP protein 33.9 70 0.0015 26.4 4.1 31 16-48 9-39 (133)
28 PF06295 DUF1043: Protein of u 33.1 1E+02 0.0022 24.7 4.9 50 28-78 8-66 (128)
29 PF00664 ABC_membrane: ABC tra 32.8 1.6E+02 0.0034 23.3 6.0 27 15-41 140-166 (275)
30 TIGR00921 2A067 The (Largely A 32.1 1.4E+02 0.003 29.5 6.6 53 21-73 250-313 (719)
31 KOG4484 Uncharacterized conser 31.3 1.1E+02 0.0023 26.8 5.0 36 32-67 91-130 (199)
32 PF11466 Doppel: Prion-like pr 29.6 49 0.0011 20.9 2.0 14 14-27 6-19 (30)
33 KOG3643 GABA receptor [Signal 29.1 57 0.0012 32.0 3.3 26 19-44 309-334 (459)
34 PF04145 Ctr: Ctr copper trans 28.7 34 0.00074 26.6 1.5 30 8-37 17-46 (144)
35 PF14163 SieB: Superinfection 28.6 1.6E+02 0.0034 23.7 5.4 39 20-58 36-75 (151)
36 PF12273 RCR: Chitin synthesis 28.5 55 0.0012 25.9 2.6 18 16-33 5-22 (130)
37 PF15167 DUF4581: Domain of un 28.3 54 0.0012 26.7 2.6 30 37-66 65-95 (128)
38 PF08041 PetM: PetM family of 28.0 1.2E+02 0.0026 19.3 3.5 22 17-38 5-26 (31)
39 PF03032 Brevenin: Brevenin/es 27.5 27 0.00058 23.9 0.6 11 62-72 10-20 (46)
40 PF03596 Cad: Cadmium resistan 26.1 85 0.0018 27.1 3.6 46 150-195 115-165 (191)
41 TIGR01710 typeII_sec_gspG gene 26.1 2.2E+02 0.0048 22.5 5.7 40 22-61 9-48 (134)
42 PF07950 DUF1691: Protein of u 25.8 2.2E+02 0.0048 21.9 5.6 51 18-73 43-93 (110)
43 KOG1357 Serine palmitoyltransf 25.2 94 0.002 30.9 4.0 48 9-56 32-88 (519)
44 PLN02250 lipid phosphate phosp 25.0 2.2E+02 0.0047 26.5 6.2 22 11-32 64-85 (314)
45 COG1811 Uncharacterized membra 24.8 1.1E+02 0.0025 27.4 4.2 35 16-50 59-93 (228)
46 PF06695 Sm_multidrug_ex: Puta 24.4 3.6E+02 0.0077 21.3 7.4 11 65-75 72-82 (121)
47 PRK08326 ribonucleotide-diphos 24.0 5E+02 0.011 23.6 8.3 61 16-76 162-224 (311)
48 TIGR00833 actII Transport prot 23.6 2.6E+02 0.0056 29.2 7.1 57 15-72 802-867 (910)
49 PF06103 DUF948: Bacterial pro 23.6 3E+02 0.0064 20.1 6.2 30 18-47 3-32 (90)
50 TIGR00833 actII Transport prot 23.6 3.4E+02 0.0073 28.4 7.9 50 24-73 238-298 (910)
51 PLN02162 triacylglycerol lipas 23.5 2E+02 0.0044 28.5 5.9 58 26-95 55-117 (475)
52 COG1033 Predicted exporters of 23.4 1.4E+02 0.0029 31.1 4.9 50 24-73 628-687 (727)
53 PLN02715 lipid phosphate phosp 23.0 2.7E+02 0.0059 26.0 6.5 20 11-30 89-108 (327)
54 KOG1962 B-cell receptor-associ 22.8 2.3E+02 0.005 25.2 5.7 27 21-47 102-128 (216)
55 PF01594 UPF0118: Domain of un 22.6 4.7E+02 0.01 22.8 7.7 53 10-62 137-191 (327)
56 PF14981 FAM165: FAM165 family 22.6 1.7E+02 0.0037 20.4 3.8 36 165-203 8-43 (51)
57 PF04883 HK97-gp10_like: Bacte 22.3 1.7E+02 0.0036 19.9 3.9 32 32-63 3-34 (78)
58 PF11023 DUF2614: Protein of u 22.1 1.9E+02 0.0042 23.4 4.6 45 13-75 11-55 (114)
59 PF06160 EzrA: Septation ring 21.3 1.3E+02 0.0028 29.7 4.2 16 48-63 23-38 (560)
60 PF15106 TMEM156: TMEM156 prot 20.8 1.3E+02 0.0029 26.9 3.7 33 15-47 177-212 (226)
61 PF04420 CHD5: CHD5-like prote 20.2 79 0.0017 26.2 2.1 18 45-62 39-56 (161)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=6.7e-78 Score=566.54 Aligned_cols=180 Identities=63% Similarity=1.014 Sum_probs=164.0
Q ss_pred CCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 028401 6 GGRSLEETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLTVAGSWISKICIP 85 (209)
Q Consensus 6 ~~rsLe~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp 85 (209)
|+|+||+||||+||+||+|||+||+++||+||++||||+|++||+|+|||||||+||||||||||||||+|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccccccccccchhhhhhhhHHHHHHHHHHhcCcchhhhhhc--CCCcccC-CCCcccccccchhhH
Q 028401 86 ESVANTWHPCDKEREPELNNEKETTEQETTEHENRRRLLEAVAASGGSIRRALAA--GSTTEKC-SKGKVPFVSEDGLHQ 162 (209)
Q Consensus 86 ~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~rrlLa~--~~~~~~C-~~Gkvpl~S~e~lhQ 162 (209)
++++++|+||+..++..... ....+||+|+. +.+.++| +||||||+|.|||||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~~------------------------~~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQ 136 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKEG------------------------SSHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQ 136 (478)
T ss_pred hhHHhcccCCCCcccccccc------------------------cchhhhhhhhhhcccccCcccccCccccccchhHHH
Confidence 99999999999654433110 01136777763 3456799 569999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhchHHHhhhhhcccccccCC
Q 028401 163 LHIFIFVLALFHVLYSILTMALSRAKMKKWKKWEKETRTIDYQFSHG 209 (209)
Q Consensus 163 LHiFIFvLAv~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~y~~~nd 209 (209)
||||||||||+||+|||+||+||++|||+||+||+|+++.+||++||
T Consensus 137 LHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d 183 (478)
T PF03094_consen 137 LHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSND 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 99999999999999999999999999999999999999999999987
No 2
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=79.37 E-value=10 Score=26.22 Aligned_cols=47 Identities=15% Similarity=0.361 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 028401 16 WAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (209)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (209)
+-++++.++.+++++++=-.+.....|=.|++.+.+-..+++.+.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788887777777777666777788888999998886
No 3
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=79.32 E-value=5 Score=30.82 Aligned_cols=46 Identities=17% Similarity=0.535 Sum_probs=35.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhcchHHHHHHHH
Q 028401 12 ETPTWAVAVVCFVLVTISIIIEHIIHL-------IGKWLTKKHKRALYEALEK 57 (209)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkk~~kkaL~eALeK 57 (209)
+|.-|...++..+++++-.++.+++-. +.+|+.+++++.-.+||.+
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777888788887765 6788888888777777764
No 4
>PRK11677 hypothetical protein; Provisional
Probab=78.78 E-value=4.9 Score=33.02 Aligned_cols=60 Identities=33% Similarity=0.419 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhc
Q 028401 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSEL---------MLLGFISLLLTVAGSW 78 (209)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL---------MLLGFISLLLtv~q~~ 78 (209)
+|..|++++|+. +++=.++.++++.=. ++++.|-+-||+.|.|| =+--.-.||=+..++|
T Consensus 2 ~W~~a~i~livG---~iiG~~~~R~~~~~~-~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y 70 (134)
T PRK11677 2 TWEYALIGLVVG---IIIGAVAMRFGNRKL-RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDY 70 (134)
T ss_pred cHHHHHHHHHHH---HHHHHHHHhhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 498888766543 334444444433211 35788999999999998 2445555666666655
No 5
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=77.32 E-value=5.9 Score=40.64 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhcc-----hHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 028401 20 VVCFVLVTISIIIEHIIHLIGKWLTKKHK-----RALYEALEKIKSELML------LGFISLLLTV 74 (209)
Q Consensus 20 ~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k-----kaL~eALeKiK~ELML------LGFISLLLtv 74 (209)
+..++.++|++.+++++|..-++.+++++ .|+.+|+.++.-=+++ +||+||+.+-
T Consensus 252 s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 252 TSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 44566788899999999999999988775 5788888887766553 7999998753
No 6
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=65.24 E-value=27 Score=26.06 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 028401 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWL 43 (209)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~L 43 (209)
.|.+++-..+|+++-..+.-.+||..||=
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36777777888888888999999997753
No 7
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=62.34 E-value=15 Score=33.78 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=25.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHH-------HHHhHhhhhcc
Q 028401 12 ETPTWAVAVVCFVLVTISIIIEHIIH-------LIGKWLTKKHK 48 (209)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH-------~lgk~Lkk~~k 48 (209)
+|+=|...++..+++++.+++.+++. .+.+|+.+||+
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45667666666666666667888884 45668877654
No 8
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=61.11 E-value=46 Score=29.03 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028401 50 ALYEALEKIKSELMLLGFISLLLTVAGSWI 79 (209)
Q Consensus 50 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 79 (209)
|=.+.+||+--.....||+-|.++..-+.+
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~i 171 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGAV 171 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999999999887763
No 9
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=58.98 E-value=18 Score=33.40 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=27.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHH-------HHHhHhhhhcc
Q 028401 12 ETPTWAVAVVCFVLVTISIIIEHIIH-------LIGKWLTKKHK 48 (209)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH-------~lgk~Lkk~~k 48 (209)
+|+=|..++++.+++++.+++.+++. .+..|+.+||+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 46778888888888888888888885 44578887654
No 10
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=58.36 E-value=19 Score=23.44 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 028401 14 PTWAVAVVCFVLVTISIIIEHIIHL 38 (209)
Q Consensus 14 PTWaVA~Vc~v~V~iSl~~Er~lH~ 38 (209)
|.|...+...++++++++..|.-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455666666888999999885443
No 11
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=56.72 E-value=44 Score=27.99 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028401 49 RALYEALEKIKSELMLLGFISLLLTVAGSWI 79 (209)
Q Consensus 49 kaL~eALeKiK~ELMLLGFISLLLtv~q~~I 79 (209)
-+-.+.||++-.-++..||+.|.++..-+.+
T Consensus 115 lp~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 115 LPSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3456889999999999999999998887765
No 12
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.22 E-value=31 Score=28.72 Aligned_cols=61 Identities=31% Similarity=0.441 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhc
Q 028401 14 PTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELM---------LLGFISLLLTVAGSW 78 (209)
Q Consensus 14 PTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 78 (209)
-+|..|.+-+| |.++|=.++-+|++- +=|+|+.+-.-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888776544 344444445555442 22345678888999998763 223457888888887
No 13
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=50.88 E-value=42 Score=23.23 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=12.4
Q ss_pred CchHHHHHHHHHHH------HHHHHHHHHHHHH
Q 028401 14 PTWAVAVVCFVLVT------ISIIIEHIIHLIG 40 (209)
Q Consensus 14 PTWaVA~Vc~v~V~------iSl~~Er~lH~lg 40 (209)
|||.- .+++|.++ +.+.+=.-+..+.
T Consensus 2 p~wlt-~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 2 PTWLT-TIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88853 23333333 4444544454443
No 14
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=50.70 E-value=38 Score=28.95 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=29.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHH
Q 028401 12 ETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEK 57 (209)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeK 57 (209)
-+|.+--.-.|++++.|-+++--++ -|--|+.+||||+. .|+++
T Consensus 22 ~~psffsthm~tILiaIvVliiiii-vli~lcssRKkKaa-AAi~e 65 (189)
T PF05568_consen 22 TPPSFFSTHMYTILIAIVVLIIIII-VLIYLCSSRKKKAA-AAIEE 65 (189)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHH-hhhhh
Confidence 4677777777777776665554333 45568888888887 66665
No 15
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=50.52 E-value=73 Score=31.44 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc----chHHHHHHHHHHHHH------HHHHHHHHHH
Q 028401 17 AVAVVCFVLVTISIIIEHIIHLIGKWLTKKH----KRALYEALEKIKSEL------MLLGFISLLL 72 (209)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~----kkaL~eALeKiK~EL------MLLGFISLLL 72 (209)
.+..+....+++++.++..+|.+.+|.++++ +.++.+|+.+.=.=+ +.+||.+|++
T Consensus 620 ~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~ 685 (719)
T TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLL 685 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3445556668889999999999999987654 367777777665533 4456766665
No 16
>PHA03105 EEV glycoprotein; Provisional
Probab=47.63 E-value=21 Score=30.81 Aligned_cols=33 Identities=30% Similarity=0.251 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchH
Q 028401 18 VAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRA 50 (209)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kka 50 (209)
+.++|+.++++..++=-.-|.+-|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346788888999998888999999999888764
No 17
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=44.39 E-value=44 Score=32.29 Aligned_cols=47 Identities=15% Similarity=0.400 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhc----chHHHHHHHHHH
Q 028401 13 TPTWAVAVVCFVLVTISIIIEHIIHLIG-------KWLTKKH----KRALYEALEKIK 59 (209)
Q Consensus 13 TPTWaVA~Vc~v~V~iSl~~Er~lH~lg-------k~Lkk~~----kkaL~eALeKiK 59 (209)
+.-|.+++..++.++|-+++|.+++++. .|+..+| ++++.|+|.|+-
T Consensus 39 ~Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~ 96 (400)
T COG3071 39 MSLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRRARKALNEGLLKLF 96 (400)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446777777777788899999999864 6887444 578899988873
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.44 E-value=18 Score=28.68 Aligned_cols=17 Identities=12% Similarity=0.540 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 028401 16 WAVAVVCFVLVTISIII 32 (209)
Q Consensus 16 WaVA~Vc~v~V~iSl~~ 32 (209)
|++.+|++++++|.|++
T Consensus 2 W~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFL 18 (130)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 77777766666665554
No 19
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=41.71 E-value=45 Score=29.57 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc-----chHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 028401 24 VLVTISIIIEHIIHLIGKWLTKKH-----KRALYEALEKIKSE------LMLLGFISLLLTV 74 (209)
Q Consensus 24 v~V~iSl~~Er~lH~lgk~Lkk~~-----kkaL~eALeKiK~E------LMLLGFISLLLtv 74 (209)
..+++++.++..+|.+.+|-.+.+ +.++.+|+.++-.= -+..||.||+++-
T Consensus 208 ~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~ltt~~gf~~L~~s~ 269 (333)
T PF03176_consen 208 FVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAILLSALTTAIGFGSLLFSP 269 (333)
T ss_pred hhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhh
Confidence 345678889999998877755433 24666666654433 4678999988853
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.56 E-value=30 Score=28.06 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 028401 30 IIIEHII 36 (209)
Q Consensus 30 l~~Er~l 36 (209)
+++=.++
T Consensus 82 lli~y~i 88 (122)
T PF01102_consen 82 LLISYCI 88 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 21
>PRK02935 hypothetical protein; Provisional
Probab=40.01 E-value=69 Score=25.77 Aligned_cols=43 Identities=21% Similarity=0.530 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028401 13 TPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLT 73 (209)
Q Consensus 13 TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLt 73 (209)
--|||...|..-|+ +-|+|-+++.. ..+ -.=.|++||++++.+
T Consensus 12 iRt~aL~lvfiG~~---------vMy~Giff~~~---~~~------m~ifm~~G~l~~l~S 54 (110)
T PRK02935 12 IRTFALSLVFIGFI---------VMYLGIFFRES---III------MTIFMLLGFLAVIAS 54 (110)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHhccc---HHH------HHHHHHHHHHHHHHH
Confidence 34788776655443 34666555322 232 334799999998854
No 22
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=38.45 E-value=1.1e+02 Score=22.86 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHH
Q 028401 17 AVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELML 64 (209)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELML 64 (209)
.+++++.+++++.-.+...-..=.+|.+.| .+.|.+|.|.+.
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~W~~~r------~tae~lk~e~~~ 94 (112)
T PF14015_consen 53 LVAAILSALAAILASLAAFFRFHERWIRYR------ATAESLKREKWL 94 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHH------HHHHHHHHHHHH
Confidence 344566777777777777777777777665 345566666553
No 23
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=37.06 E-value=1.4e+02 Score=30.75 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh-----cchHHHHHHHHHHHHHH------HHHHHHHHHHHh
Q 028401 20 VVCFVLVTISIIIEHIIHLIGKWLTKK-----HKRALYEALEKIKSELM------LLGFISLLLTVA 75 (209)
Q Consensus 20 ~Vc~v~V~iSl~~Er~lH~lgk~Lkk~-----~kkaL~eALeKiK~ELM------LLGFISLLLtv~ 75 (209)
++.+.++++.+.++.++|.+.++.+++ +++++.+++.++-.=++ ..||++|+.+-+
T Consensus 325 s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~ 391 (862)
T TIGR03480 325 SVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDY 391 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344556678999999999998887653 24566666666655443 468877776633
No 24
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=36.10 E-value=20 Score=25.97 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 028401 55 LEKIKSELMLLGF 67 (209)
Q Consensus 55 LeKiK~ELMLLGF 67 (209)
+|++|+|||-+|.
T Consensus 17 ldrLK~~L~a~GL 29 (60)
T PF13297_consen 17 LDRLKSALMALGL 29 (60)
T ss_pred HHHHHHHHHHcCC
Confidence 6899999999984
No 25
>PF15444 TMEM247: Transmembrane protein 247
Probab=35.77 E-value=44 Score=29.41 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhh
Q 028401 167 IFVLALFHVLYSILTMALSRAKM 189 (209)
Q Consensus 167 IFvLAv~HV~ys~lTm~Lg~~Ki 189 (209)
||+|--=|-+||+.+++|...|.
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 46666778889999999999884
No 26
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=35.07 E-value=1.4e+02 Score=22.60 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028401 34 HIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLT 73 (209)
Q Consensus 34 r~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLt 73 (209)
=.+|-+=.-..|||+.+=.||.. .+|-+||+..
T Consensus 21 ~~lh~lP~~iA~kr~Hpq~eaI~-------v~gwisLft~ 53 (78)
T PF11742_consen 21 WKLHDLPGKIAHKRNHPQAEAIH-------VLGWISLFTL 53 (78)
T ss_pred HHHHhhHHHHHHhcCCchHHHHH-------HHHHHHHHHH
Confidence 46788877788888889888875 6899998764
No 27
>PF15050 SCIMP: SCIMP protein
Probab=33.92 E-value=70 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.642 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 028401 16 WAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHK 48 (209)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k 48 (209)
|++-+|. ||+||+.+--+|--+-+|+-|+.|
T Consensus 9 WiiLAVa--II~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 9 WIILAVA--IILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc
Confidence 7766666 566666666677777777777665
No 28
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.09 E-value=1e+02 Score=24.69 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhc
Q 028401 28 ISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELM---------LLGFISLLLTVAGSW 78 (209)
Q Consensus 28 iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 78 (209)
|.+++=.++.++.+.= .++++.|-.-|++.|.||= +-.-.-||=...++|
T Consensus 8 vG~iiG~~~~r~~~~~-~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 8 VGLIIGFLIGRLTSSN-QQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554321 1335789999999999983 555556776666655
No 29
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=32.79 E-value=1.6e+02 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.496 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028401 15 TWAVAVVCFVLVTISIIIEHIIHLIGK 41 (209)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk 41 (209)
.|.++.++.+++.+.+++-+.+.+..+
T Consensus 140 ~~~l~l~~l~~~~~~~~~~~~~~~~~~ 166 (275)
T PF00664_consen 140 SWKLALILLIILPLLFLISFIFSKKIR 166 (275)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhHhhhhhhccccc
Confidence 366666666666666665555444433
No 30
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=32.06 E-value=1.4e+02 Score=29.54 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc-----chHHHHHHHHHHHHHH------HHHHHHHHHH
Q 028401 21 VCFVLVTISIIIEHIIHLIGKWLTKKH-----KRALYEALEKIKSELM------LLGFISLLLT 73 (209)
Q Consensus 21 Vc~v~V~iSl~~Er~lH~lgk~Lkk~~-----kkaL~eALeKiK~ELM------LLGFISLLLt 73 (209)
+....+++++.++.++|.+..|.++++ ++++.+|+.+.-.=.. ..||.||+++
T Consensus 250 ~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s 313 (719)
T TIGR00921 250 LLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALS 313 (719)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhc
Confidence 345555678899999999999875532 4677888877655443 4578777664
No 31
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.28 E-value=1.1e+02 Score=26.81 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=30.1
Q ss_pred HHHHHHHHHhHhhhhc----chHHHHHHHHHHHHHHHHHH
Q 028401 32 IEHIIHLIGKWLTKKH----KRALYEALEKIKSELMLLGF 67 (209)
Q Consensus 32 ~Er~lH~lgk~Lkk~~----kkaL~eALeKiK~ELMLLGF 67 (209)
+||.+.+|.|-++... .+.+-+-|.|.|.+||..-|
T Consensus 91 aeR~irrLeK~~keS~ad~kd~~i~~qlrk~kidL~YVr~ 130 (199)
T KOG4484|consen 91 AERSIRRLEKLIKESGADVKDKQIQQQLRKLKIDLEYVRF 130 (199)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHh
Confidence 5888999988887543 56799999999999999866
No 32
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=29.56 E-value=49 Score=20.88 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=11.2
Q ss_pred CchHHHHHHHHHHH
Q 028401 14 PTWAVAVVCFVLVT 27 (209)
Q Consensus 14 PTWaVA~Vc~v~V~ 27 (209)
-+|.+|+||..+..
T Consensus 6 g~~~lAi~c~LL~s 19 (30)
T PF11466_consen 6 GGWWLAIVCVLLFS 19 (30)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 47999999987653
No 33
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=29.06 E-value=57 Score=32.04 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 028401 19 AVVCFVLVTISIIIEHIIHLIGKWLT 44 (209)
Q Consensus 19 A~Vc~v~V~iSl~~Er~lH~lgk~Lk 44 (209)
-.||++||..|++==...||+.+..+
T Consensus 309 L~vCFvfVF~sLLEYA~V~Y~~~~~~ 334 (459)
T KOG3643|consen 309 LGVCFVFVFLSLLEYAAVNYMFKRRG 334 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46999999999987778899887663
No 34
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=28.74 E-value=34 Score=26.60 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=17.8
Q ss_pred CCcccCCchHHHHHHHHHHHHHHHHHHHHH
Q 028401 8 RSLEETPTWAVAVVCFVLVTISIIIEHIIH 37 (209)
Q Consensus 8 rsLe~TPTWaVA~Vc~v~V~iSl~~Er~lH 37 (209)
+++.-+.+|..+.-|+++++++++.|-+-.
T Consensus 17 ~~W~~~s~~~~~~sci~~f~lav~~e~L~~ 46 (144)
T PF04145_consen 17 KSWKPSSAGAYVGSCIGVFLLAVLYEFLKA 46 (144)
T ss_dssp --------HHHHHHHHHHHHHHHHTTT---
T ss_pred CCcEECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667889999999999999999886543
No 35
>PF14163 SieB: Superinfection exclusion protein B
Probab=28.57 E-value=1.6e+02 Score=23.69 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh-cchHHHHHHHHH
Q 028401 20 VVCFVLVTISIIIEHIIHLIGKWLTKK-HKRALYEALEKI 58 (209)
Q Consensus 20 ~Vc~v~V~iSl~~Er~lH~lgk~Lkk~-~kkaL~eALeKi 58 (209)
+...+++.+|+++=+.+.++-++.+++ ++|...+.++|.
T Consensus 36 i~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~ 75 (151)
T PF14163_consen 36 IGLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKK 75 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777776664443 234444555554
No 36
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.47 E-value=55 Score=25.86 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 028401 16 WAVAVVCFVLVTISIIIE 33 (209)
Q Consensus 16 WaVA~Vc~v~V~iSl~~E 33 (209)
|+|.+|+++|++++++.=
T Consensus 5 ~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCH 22 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888887777773
No 37
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=28.34 E-value=54 Score=26.73 Aligned_cols=30 Identities=33% Similarity=0.518 Sum_probs=21.9
Q ss_pred HHHHhHhhhhcchHHHHHHHHHHHHH-HHHH
Q 028401 37 HLIGKWLTKKHKRALYEALEKIKSEL-MLLG 66 (209)
Q Consensus 37 H~lgk~Lkk~~kkaL~eALeKiK~EL-MLLG 66 (209)
...-.|...-.||.|.+.||||+.-+ ||||
T Consensus 65 qlaqdyisscGKk~l~e~leKvf~sf~pllg 95 (128)
T PF15167_consen 65 QLAQDYISSCGKKTLTESLEKVFKSFRPLLG 95 (128)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhccC
Confidence 33445667777889999999998755 4555
No 38
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=28.00 E-value=1.2e+02 Score=19.26 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028401 17 AVAVVCFVLVTISIIIEHIIHL 38 (209)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~ 38 (209)
.+|++|++++++.+.+=-.|=+
T Consensus 5 ~~a~i~~~lvlvGla~Gf~LLk 26 (31)
T PF08041_consen 5 NIAVICFGLVLVGLALGFVLLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 5799999999999887655544
No 39
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=27.49 E-value=27 Score=23.88 Aligned_cols=11 Identities=64% Similarity=0.851 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 028401 62 LMLLGFISLLL 72 (209)
Q Consensus 62 LMLLGFISLLL 72 (209)
|..||+|||-+
T Consensus 10 lfflG~ISlSl 20 (46)
T PF03032_consen 10 LFFLGTISLSL 20 (46)
T ss_pred HHHHHHcccch
Confidence 44566666643
No 40
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=26.14 E-value=85 Score=27.13 Aligned_cols=46 Identities=17% Similarity=0.495 Sum_probs=40.3
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHh-----hhchHHH
Q 028401 150 GKVPFVSEDGLHQLHIFIFVLALFHVLYSILTMALSRAK-----MKKWKKW 195 (209)
Q Consensus 150 Gkvpl~S~e~lhQLHiFIFvLAv~HV~ys~lTm~Lg~~K-----ir~Wk~W 195 (209)
=++|+....+..|+.+.+.|-.+.=.+.|.+...|++.+ +.||.+|
T Consensus 115 IYiP~Fa~~s~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~ 165 (191)
T PF03596_consen 115 IYIPLFASLSLAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRW 165 (191)
T ss_pred EeehhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhccc
Confidence 589999999999999999999999999999999999876 4556555
No 41
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=26.08 E-value=2.2e+02 Score=22.52 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHH
Q 028401 22 CFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSE 61 (209)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~E 61 (209)
..|+++|++++==++-.+....++.+++.....+..++.-
T Consensus 9 livlaIigil~~i~~p~~~~~~~~a~~~~~~~~l~~i~~a 48 (134)
T TIGR01710 9 MVVLVILGLLAALVAPKLFSQADKAKAQVAKAQIKALKNA 48 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444555555556666655555555555443
No 42
>PF07950 DUF1691: Protein of unknown function (DUF1691); InterPro: IPR012472 This family of fungal proteins is uncharacterised. Each protein contains two copies of this region.
Probab=25.81 E-value=2.2e+02 Score=21.94 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028401 18 VAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLT 73 (209)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLt 73 (209)
++..+.+-+..-=++-...-+++++-+++||+.-.. ......+||+|+.+.
T Consensus 43 ~~~~~Lv~~~~~Hv~sG~a~~~~~~~~~~rr~~~~~-----~~~~~~iG~~sl~~~ 93 (110)
T PF07950_consen 43 LEYLLLVGSGVYHVVSGIALRLGRRSRRRRRRGWWV-----INGQSAIGLISLWRL 93 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----cchhHHHHHHHHHHh
Confidence 333344434444444444555555544444433222 278888999988774
No 43
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=94 Score=30.95 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=40.1
Q ss_pred CcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc---------chHHHHHHH
Q 028401 9 SLEETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKH---------KRALYEALE 56 (209)
Q Consensus 9 sLe~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~---------kkaL~eALe 56 (209)
.++.||.|-|++.-.+.-.|-+++-+..-++||||-+++ .-|||.+.|
T Consensus 32 ~~~~~~~~~v~l~ty~~y~~l~~~ghvrd~~~~~f~~~~~~~~~~~~g~~ply~~Fe 88 (519)
T KOG1357|consen 32 KFEDTIPYLVALATYLSYLLLFVFGHVRDFFGKIFFVKKYKKDNEMDGYAPLYSSFE 88 (519)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhheehhhhcccccccCccchhhhHH
Confidence 478999999999999999999999999999999998533 236777766
No 44
>PLN02250 lipid phosphate phosphatase
Probab=24.97 E-value=2.2e+02 Score=26.45 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=16.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHH
Q 028401 11 EETPTWAVAVVCFVLVTISIII 32 (209)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~ 32 (209)
+--|+|.+.+++.++-++.+++
T Consensus 64 ~tVp~~~l~ii~~~iP~~vilv 85 (314)
T PLN02250 64 NTIPFWAVPLIAILLPFAVILV 85 (314)
T ss_pred CeecHHHHHHHHHHHHHHHHHH
Confidence 5679999988877666665544
No 45
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=24.81 E-value=1.1e+02 Score=27.40 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchH
Q 028401 16 WAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRA 50 (209)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kka 50 (209)
=.+|+|.-..|---+-+|+.+.++|+|++|++.+.
T Consensus 59 ~ilslv~G~vIGe~~niek~in~~g~~~~~~~~~~ 93 (228)
T COG1811 59 ILLALVIGAVIGELINIEKRINNLGQKLEDKPGHG 93 (228)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCcc
Confidence 34566666667777889999999999999965443
No 46
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=24.36 E-value=3.6e+02 Score=21.27 Aligned_cols=11 Identities=55% Similarity=0.685 Sum_probs=8.5
Q ss_pred HHHHHHHHHHh
Q 028401 65 LGFISLLLTVA 75 (209)
Q Consensus 65 LGFISLLLtv~ 75 (209)
.||+.|.+-|.
T Consensus 72 yg~~GL~lFVa 82 (121)
T PF06695_consen 72 YGFWGLALFVA 82 (121)
T ss_pred HhHHHHHHHHh
Confidence 69999988653
No 47
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=24.03 E-value=5e+02 Score=23.58 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc-hHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 028401 16 WAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHK-RALYEALEKI-KSELMLLGFISLLLTVAG 76 (209)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k-kaL~eALeKi-K~ELMLLGFISLLLtv~q 76 (209)
.++|+|++-+++=++++.-+.+.+-.||+++++ +.+.++.+.| ++|.+=+.|...++.-..
T Consensus 162 ~~~a~v~~~~~iEGi~f~sgF~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~ 224 (311)
T PRK08326 162 QVRASVTYNHVVEGVLAETGYYAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLV 224 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888889999999999999998776 6699999876 689999999988885443
No 48
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=23.63 E-value=2.6e+02 Score=29.23 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc---chHHHHHHHHHH------HHHHHHHHHHHHH
Q 028401 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKH---KRALYEALEKIK------SELMLLGFISLLL 72 (209)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~---kkaL~eALeKiK------~ELMLLGFISLLL 72 (209)
+|.+.... ..+++.+.+.+.+|.+.++-++++ +.++.+|+.+.- .=.|..||.||+.
T Consensus 802 ~~~~~~~~-~~il~glgvDY~I~l~sR~ree~~~g~~~av~~a~~~tg~~I~~a~~~~~~~f~~l~~ 867 (910)
T TIGR00833 802 HWSVLAGV-FVLLVALGVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAAGLVFAGTMAALAS 867 (910)
T ss_pred chhHHHHH-HHHHHHhhhchHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34444433 344588889999999998877653 456666666542 2367778888876
No 49
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.62 E-value=3e+02 Score=20.07 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 028401 18 VAVVCFVLVTISIIIEHIIHLIGKWLTKKH 47 (209)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~ 47 (209)
+++....|+++.+++=..+-++++-+++-+
T Consensus 3 ~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~ 32 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKVLKKLKKTLDEVN 32 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666677777877777644
No 50
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=23.59 E-value=3.4e+02 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc-----chHHHHHHHHHHHHH------HHHHHHHHHHH
Q 028401 24 VLVTISIIIEHIIHLIGKWLTKKH-----KRALYEALEKIKSEL------MLLGFISLLLT 73 (209)
Q Consensus 24 v~V~iSl~~Er~lH~lgk~Lkk~~-----kkaL~eALeKiK~EL------MLLGFISLLLt 73 (209)
..+++.+.++..+|.+..+.++++ +.|+.+++.+.-.=. +..||.+|+++
T Consensus 238 ~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~~~ 298 (910)
T TIGR00833 238 TALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALSLA 298 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356788899999999998877543 357777777766544 45788888775
No 51
>PLN02162 triacylglycerol lipase
Probab=23.48 E-value=2e+02 Score=28.47 Aligned_cols=58 Identities=19% Similarity=0.465 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhcccccccccccccccccC
Q 028401 26 VTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLL-----GFISLLLTVAGSWISKICIPESVANTWHPC 95 (209)
Q Consensus 26 V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLL-----GFISLLLtv~q~~IskICIp~~~~~~~lPC 95 (209)
|++|+++.++|-.+.+ || +.+--+-|=.|=| ||+.||+.+.|+ |+=+|..-..+++-|
T Consensus 55 i~~s~~~~~~l~~~~~--------p~-~~~g~~~e~~lnl~~~n~g~~~~~~~~l~g---~~~~p~~~s~~~~s~ 117 (475)
T PLN02162 55 LALAIFLQKVLMLLSK--------PF-AFIGQKLTYWLNLLTANGGFFNLILNLLSG---KLVKPDKSSATYTSF 117 (475)
T ss_pred HHHHHHHHHHHHHHhh--------HH-HHHHHHHHHHHHHHHhcCChHHHHHHHhcC---ceeccCCCCccHHhH
Confidence 4678888888887743 44 3333333322222 777799999998 666788887888777
No 52
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=23.41 E-value=1.4e+02 Score=31.06 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc----chHHHHHHHHHHHHH------HHHHHHHHHHH
Q 028401 24 VLVTISIIIEHIIHLIGKWLTKKH----KRALYEALEKIKSEL------MLLGFISLLLT 73 (209)
Q Consensus 24 v~V~iSl~~Er~lH~lgk~Lkk~~----kkaL~eALeKiK~EL------MLLGFISLLLt 73 (209)
.=+++.+-+|+++|....|+..++ ++|.+++.+++=.=+ +..||.+|++.
T Consensus 628 ~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~ltt~~GF~aLi~S 687 (727)
T COG1033 628 GAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASALTTAIGFLALIFS 687 (727)
T ss_pred HHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Confidence 345677889999999999996655 457777777764443 56899999873
No 53
>PLN02715 lipid phosphate phosphatase
Probab=23.01 E-value=2.7e+02 Score=26.01 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=14.3
Q ss_pred ccCCchHHHHHHHHHHHHHH
Q 028401 11 EETPTWAVAVVCFVLVTISI 30 (209)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl 30 (209)
|.-|+|.+.+++.++-++-+
T Consensus 89 ~tVp~~~l~vi~~liPii~i 108 (327)
T PLN02715 89 NTVPIWSVPVYAVLLPIILF 108 (327)
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 56899999887776655433
No 54
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.78 E-value=2.3e+02 Score=25.23 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 028401 21 VCFVLVTISIIIEHIIHLIGKWLTKKH 47 (209)
Q Consensus 21 Vc~v~V~iSl~~Er~lH~lgk~Lkk~~ 47 (209)
+|.+...+|+++.|..|++..-.+-+.
T Consensus 102 isGf~LFL~lvI~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 102 ISGFVLFLSLVIRRLHTLLRELATLRA 128 (216)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455778899999999999988776664
No 55
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=22.65 E-value=4.7e+02 Score=22.81 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=38.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHH--HHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 028401 10 LEETPTWAVAVVCFVLVTISIII--EHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (209)
Q Consensus 10 Le~TPTWaVA~Vc~v~V~iSl~~--Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (209)
...+|++.+..+.++++..-++. ++....+-+++.+++|+...+.++|+.+.+
T Consensus 137 ~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (327)
T PF01594_consen 137 ISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIRLLPPRNRERFEEILRKIDQSL 191 (327)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 45678888777766666555554 567777778888887888888888888864
No 56
>PF14981 FAM165: FAM165 family
Probab=22.57 E-value=1.7e+02 Score=20.43 Aligned_cols=36 Identities=19% Similarity=0.477 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhchHHHhhhhhccc
Q 028401 165 IFIFVLALFHVLYSILTMALSRAKMKKWKKWEKETRTID 203 (209)
Q Consensus 165 iFIFvLAv~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~ 203 (209)
...+.||.--.+.| +++++.||++=|+-|...+..+
T Consensus 8 lLlYILaaKtlilC---laFAgvK~yQ~krlEak~~k~~ 43 (51)
T PF14981_consen 8 LLLYILAAKTLILC---LAFAGVKMYQRKRLEAKLKKLE 43 (51)
T ss_pred HHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHH
Confidence 36777887665544 6789999999999988766543
No 57
>PF04883 HK97-gp10_like: Bacteriophage HK97-gp10, putative tail-component; InterPro: IPR010064 This entry represents a family of highly divergent putative prophage and bacteriophage proteins of unknown function. The family includes Gp10 from phages HK022 and HK97.
Probab=22.31 E-value=1.7e+02 Score=19.94 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHhhhhcchHHHHHHHHHHHHHH
Q 028401 32 IEHIIHLIGKWLTKKHKRALYEALEKIKSELM 63 (209)
Q Consensus 32 ~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELM 63 (209)
+++-|..+++-..+.-+++|-++.+.+++|+-
T Consensus 3 l~~~l~~~~~~~~~~~~~~l~~~a~~~~~~~k 34 (78)
T PF04883_consen 3 LERQLEKLQDKAEKAAKKALREAAEEIEDEAK 34 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667666677778889999998888764
No 58
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.11 E-value=1.9e+02 Score=23.43 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=27.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028401 13 TPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLTVA 75 (209)
Q Consensus 13 TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELMLLGFISLLLtv~ 75 (209)
--|||+..+...+++. ++|-+|+ +-.-+=.=.|+|||++.+....
T Consensus 11 ~R~~al~lif~g~~vm---------y~gi~f~---------~~~~im~ifmllG~L~~l~S~~ 55 (114)
T PF11023_consen 11 IRTFALSLIFIGMIVM---------YIGIFFK---------ASPIIMVIFMLLGLLAILASTA 55 (114)
T ss_pred HHHHHHHHHHHHHHHH---------hhhhhhc---------ccHHHHHHHHHHHHHHHHHHHH
Confidence 3478888776655543 3444553 2222344589999998877543
No 59
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.33 E-value=1.3e+02 Score=29.71 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHH
Q 028401 48 KRALYEALEKIKSELM 63 (209)
Q Consensus 48 kkaL~eALeKiK~ELM 63 (209)
...-...|+.=|.+||
T Consensus 23 ~~k~i~~Le~~k~~l~ 38 (560)
T PF06160_consen 23 YYKEIDELEERKNELM 38 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345777777777766
No 60
>PF15106 TMEM156: TMEM156 protein family
Probab=20.75 E-value=1.3e+02 Score=26.93 Aligned_cols=33 Identities=33% Similarity=0.575 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH---HHhHhhhhc
Q 028401 15 TWAVAVVCFVLVTISIIIEHIIHL---IGKWLTKKH 47 (209)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~---lgk~Lkk~~ 47 (209)
||-|-+...++++|++++-+++.- .-||-+.|-
T Consensus 177 TWYvLVllVfiflii~iI~KIle~hrrvqkwq~hky 212 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILIIYKILEGHRRVQKWQSHKY 212 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHhhcCC
Confidence 899998888888999998888753 446665443
No 61
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.18 E-value=79 Score=26.18 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=13.0
Q ss_pred hhcchHHHHHHHHHHHHH
Q 028401 45 KKHKRALYEALEKIKSEL 62 (209)
Q Consensus 45 k~~kkaL~eALeKiK~EL 62 (209)
.++.+.|..-+.++|+|+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~ 56 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKREL 56 (161)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 344567888888888886
Done!