Query 028401
Match_columns 209
No_of_seqs 115 out of 245
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 18:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 26.2 16 0.0012 23.2 1.9 11 163-173 17-27 (52)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 24.3 23 0.0017 20.8 2.2 13 165-177 22-34 (37)
3 d3b60a2 f.37.1.1 (A:10-328) Mu 24.1 72 0.0052 23.0 5.8 24 16-39 156-179 (319)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 22.0 83 0.006 20.6 5.4 37 22-58 7-43 (158)
5 d1iwga8 f.35.1.1 (A:513-566,A: 17.9 78 0.0057 23.8 4.9 56 18-73 111-178 (222)
6 d1zkea1 a.30.6.1 (A:1-79) Hypo 17.4 21 0.0015 24.2 1.1 15 49-63 63-77 (79)
7 d1j1va_ a.4.12.2 (A:) Chromoso 15.9 60 0.0044 21.5 3.4 30 33-62 46-75 (94)
8 d2gola1 a.61.1.1 (A:7-107) HIV 15.3 22 0.0016 25.3 0.8 11 51-61 91-101 (101)
9 d2hyda2 f.37.1.1 (A:1-323) Put 14.1 1.1E+02 0.0083 21.9 4.9 24 15-38 160-183 (323)
10 d1h5oa_ g.9.1.2 (A:) Crotamine 13.5 37 0.0027 20.1 1.4 17 79-95 14-30 (42)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=26.24 E-value=16 Score=23.16 Aligned_cols=11 Identities=64% Similarity=1.065 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH
Q 028401 163 LHIFIFVLALF 173 (209)
Q Consensus 163 LHiFIFvLAv~ 173 (209)
++.|.|+||++
T Consensus 17 ~~~fL~~LAl~ 27 (52)
T d1xrda1 17 LATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999999965
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.35 E-value=23 Score=20.77 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 028401 165 IFIFVLALFHVLY 177 (209)
Q Consensus 165 iFIFvLAv~HV~y 177 (209)
.+||||||..-.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999886655
No 3
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=24.13 E-value=72 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028401 16 WAVAVVCFVLVTISIIIEHIIHLI 39 (209)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~l 39 (209)
|.++.++.+++.+.+++-....+-
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~ 179 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKR 179 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhH
Confidence 667777777777777665544443
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=22.01 E-value=83 Score=20.61 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHH
Q 028401 22 CFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKI 58 (209)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKi 58 (209)
..|+++|+|+.==++=.+.+|.++.+++.....+.-+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666677777777777655544444433
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.88 E-value=78 Score=23.80 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhh--hcchHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 028401 18 VAVVCFVLVTISIIIEHIIHLIGKWLTK--KHKRALYEALEKIKSEL----------MLLGFISLLLT 73 (209)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk--~~kkaL~eALeKiK~EL----------MLLGFISLLLt 73 (209)
+.+....++++++.+...+|.+..+.++ ++.+...+|..+--.+- +++||++|.+.
T Consensus 111 ~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 111 VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 4455667788999999999999988652 22234444443333332 37889888874
No 6
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=17.38 E-value=21 Score=24.23 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHH
Q 028401 49 RALYEALEKIKSELM 63 (209)
Q Consensus 49 kaL~eALeKiK~ELM 63 (209)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678899999999874
No 7
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=15.90 E-value=60 Score=21.54 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 028401 33 EHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (209)
Q Consensus 33 Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (209)
...+..+|+.|..|.-.+...|..|+++++
T Consensus 46 ~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 46 NHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 445778899996555588999999998754
No 8
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=15.31 E-value=22 Score=25.31 Aligned_cols=11 Identities=55% Similarity=0.652 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q 028401 51 LYEALEKIKSE 61 (209)
Q Consensus 51 L~eALeKiK~E 61 (209)
=-|||+||++|
T Consensus 91 TkEAl~kieee 101 (101)
T d2gola1 91 TKEALDKIEEE 101 (101)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHhcC
Confidence 46999999986
No 9
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=14.13 E-value=1.1e+02 Score=21.87 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 028401 15 TWAVAVVCFVLVTISIIIEHIIHL 38 (209)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~ 38 (209)
.|.++.++.+++.+.+++-..+.+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~ 183 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFG 183 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcc
Confidence 366666666666666665544433
No 10
>d1h5oa_ g.9.1.2 (A:) Crotamine {South american rattlesnake (Crotalus durissus terrificus) [TaxId: 8732]}
Probab=13.49 E-value=37 Score=20.12 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=10.6
Q ss_pred ccccccccccccccccC
Q 028401 79 ISKICIPESVANTWHPC 95 (209)
Q Consensus 79 IskICIp~~~~~~~lPC 95 (209)
-.+||+|+|--.--+.|
T Consensus 14 k~~iclppssd~gkmdc 30 (42)
T d1h5oa_ 14 KEKICLPPSSDFGKMDC 30 (42)
T ss_dssp TTSCCSSSSCBCCSSSS
T ss_pred cceeECCCccccccccC
Confidence 35899999853322344
Done!