Query 028402
Match_columns 209
No_of_seqs 235 out of 1911
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.3E-21 2.8E-26 149.1 15.6 83 19-101 31-114 (144)
2 KOG0149 Predicted RNA-binding 99.8 2.2E-20 4.7E-25 148.6 10.2 86 15-100 5-90 (247)
3 TIGR01659 sex-lethal sex-letha 99.8 1.2E-18 2.5E-23 150.2 15.7 83 20-102 191-276 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-17 2.8E-22 143.8 12.8 83 20-102 267-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 1.1E-17 2.4E-22 144.2 11.7 84 17-100 102-186 (346)
6 KOG0121 Nuclear cap-binding pr 99.7 1E-17 2.2E-22 122.0 8.1 79 20-98 34-113 (153)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.2E-17 9.2E-22 140.6 11.4 81 21-101 2-83 (352)
8 TIGR01648 hnRNP-R-Q heterogene 99.7 3.4E-16 7.3E-21 142.0 17.6 75 21-103 232-309 (578)
9 KOG0148 Apoptosis-promoting RN 99.7 1.4E-16 3E-21 129.3 13.4 79 18-102 160-239 (321)
10 KOG0113 U1 small nuclear ribon 99.7 7.4E-17 1.6E-21 132.3 11.8 100 18-117 97-197 (335)
11 PF00076 RRM_1: RNA recognitio 99.7 1.8E-16 3.9E-21 105.0 8.9 69 25-94 1-70 (70)
12 PLN03120 nucleic acid binding 99.7 6E-16 1.3E-20 126.7 10.6 75 22-99 4-78 (260)
13 KOG0105 Alternative splicing f 99.7 8.8E-16 1.9E-20 118.5 10.8 77 20-99 4-81 (241)
14 KOG0122 Translation initiation 99.7 5.4E-16 1.2E-20 124.2 9.8 82 20-101 187-269 (270)
15 KOG0125 Ataxin 2-binding prote 99.7 4.5E-16 9.7E-21 129.2 9.3 88 18-107 92-180 (376)
16 KOG4207 Predicted splicing fac 99.6 7.3E-16 1.6E-20 120.8 9.1 86 16-101 7-93 (256)
17 KOG0107 Alternative splicing f 99.6 1.7E-15 3.7E-20 115.9 10.8 78 21-103 9-87 (195)
18 PF14259 RRM_6: RNA recognitio 99.6 1.9E-15 4.1E-20 100.7 8.9 69 25-94 1-70 (70)
19 TIGR01645 half-pint poly-U bin 99.6 3.1E-15 6.7E-20 136.2 12.5 83 20-102 202-285 (612)
20 KOG0117 Heterogeneous nuclear 99.6 6.9E-15 1.5E-19 126.4 13.2 81 20-108 257-338 (506)
21 TIGR01628 PABP-1234 polyadenyl 99.6 1.3E-14 2.8E-19 132.8 15.5 83 19-102 282-365 (562)
22 TIGR01645 half-pint poly-U bin 99.6 3.7E-15 7.9E-20 135.7 10.1 79 20-98 105-184 (612)
23 TIGR01622 SF-CC1 splicing fact 99.6 6.9E-15 1.5E-19 131.2 11.2 82 19-100 86-167 (457)
24 TIGR01628 PABP-1234 polyadenyl 99.6 9.6E-15 2.1E-19 133.7 11.5 77 23-99 1-78 (562)
25 PLN03121 nucleic acid binding 99.6 1.2E-14 2.6E-19 117.4 10.6 76 21-99 4-79 (243)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.6 5.2E-14 1.1E-18 127.1 13.2 82 20-101 293-375 (509)
27 PLN03213 repressor of silencin 99.6 1.9E-14 4.1E-19 125.3 9.6 78 19-100 7-87 (759)
28 TIGR01648 hnRNP-R-Q heterogene 99.6 2.3E-14 4.9E-19 130.2 10.5 74 21-95 57-132 (578)
29 TIGR01622 SF-CC1 splicing fact 99.5 6.2E-14 1.3E-18 125.1 12.2 79 21-99 185-264 (457)
30 KOG0130 RNA-binding protein RB 99.5 2.5E-14 5.5E-19 105.2 7.8 88 15-102 65-153 (170)
31 KOG0111 Cyclophilin-type pepti 99.5 8.2E-15 1.8E-19 116.0 5.5 84 20-103 8-92 (298)
32 smart00362 RRM_2 RNA recogniti 99.5 1.1E-13 2.3E-18 90.9 9.3 71 24-96 1-72 (72)
33 KOG0148 Apoptosis-promoting RN 99.5 4.2E-14 9E-19 114.9 8.3 83 20-102 60-143 (321)
34 KOG0126 Predicted RNA-binding 99.5 3.2E-15 6.9E-20 115.1 1.2 80 20-99 33-113 (219)
35 smart00360 RRM RNA recognition 99.5 1.3E-13 2.8E-18 90.1 8.8 70 27-96 1-71 (71)
36 KOG0116 RasGAP SH3 binding pro 99.5 3.1E-13 6.7E-18 118.2 13.0 84 21-104 287-370 (419)
37 KOG0145 RNA-binding protein EL 99.5 1.1E-13 2.4E-18 112.1 9.3 85 19-103 38-123 (360)
38 COG0724 RNA-binding proteins ( 99.5 1.4E-13 3.1E-18 112.2 10.2 78 22-99 115-193 (306)
39 KOG0108 mRNA cleavage and poly 99.5 6.5E-14 1.4E-18 123.0 7.8 84 23-106 19-103 (435)
40 KOG0117 Heterogeneous nuclear 99.5 1.4E-13 3.1E-18 118.4 9.3 79 20-98 81-161 (506)
41 KOG0144 RNA-binding protein CU 99.5 5.2E-14 1.1E-18 120.6 6.0 84 21-105 123-210 (510)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.2E-13 1.3E-17 119.8 11.6 78 19-101 272-351 (481)
43 cd00590 RRM RRM (RNA recogniti 99.4 1.3E-12 2.7E-17 86.1 10.0 73 24-97 1-74 (74)
44 KOG0131 Splicing factor 3b, su 99.4 1.6E-13 3.5E-18 105.7 6.3 80 20-99 7-87 (203)
45 KOG0144 RNA-binding protein CU 99.4 2.9E-13 6.2E-18 116.2 8.2 84 18-101 30-117 (510)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 8.3E-13 1.8E-17 118.9 10.9 75 21-101 1-78 (481)
47 KOG0127 Nucleolar protein fibr 99.4 7.1E-13 1.5E-17 116.6 9.0 87 17-103 287-380 (678)
48 KOG4205 RNA-binding protein mu 99.4 2.5E-13 5.4E-18 114.8 6.0 85 21-105 5-89 (311)
49 KOG4205 RNA-binding protein mu 99.4 2.8E-12 6E-17 108.5 11.5 85 21-105 96-180 (311)
50 KOG4212 RNA-binding protein hn 99.4 1.9E-12 4.2E-17 111.3 10.5 79 21-100 43-123 (608)
51 KOG0114 Predicted RNA-binding 99.3 8.8E-12 1.9E-16 87.9 9.3 79 19-100 15-94 (124)
52 KOG0109 RNA-binding protein LA 99.3 1.8E-12 3.9E-17 106.5 6.0 71 23-101 3-74 (346)
53 KOG0147 Transcriptional coacti 99.3 2.1E-12 4.4E-17 113.8 6.6 85 20-104 276-361 (549)
54 KOG0127 Nucleolar protein fibr 99.3 7E-12 1.5E-16 110.5 9.0 80 21-101 116-196 (678)
55 KOG0415 Predicted peptidyl pro 99.3 3.3E-12 7.2E-17 107.4 6.4 81 20-100 237-318 (479)
56 smart00361 RRM_1 RNA recogniti 99.3 1.4E-11 3.1E-16 82.3 8.0 60 36-95 2-69 (70)
57 KOG0153 Predicted RNA-binding 99.3 9.2E-12 2E-16 104.4 8.4 85 10-100 216-302 (377)
58 KOG0124 Polypyrimidine tract-b 99.3 2E-12 4.4E-17 109.1 4.4 76 21-96 112-188 (544)
59 PF13893 RRM_5: RNA recognitio 99.3 4.9E-11 1.1E-15 76.0 8.1 55 39-98 1-56 (56)
60 KOG0109 RNA-binding protein LA 99.2 9.4E-12 2E-16 102.3 5.9 83 17-107 73-156 (346)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.2 2.8E-11 6E-16 109.4 9.4 77 16-98 169-257 (509)
62 KOG0146 RNA-binding protein ET 99.2 1.4E-11 3E-16 100.3 5.5 84 18-101 281-365 (371)
63 KOG0131 Splicing factor 3b, su 99.2 3.3E-11 7.2E-16 93.0 6.6 78 22-99 96-175 (203)
64 KOG0123 Polyadenylate-binding 99.2 9.6E-11 2.1E-15 101.9 9.4 84 21-107 75-159 (369)
65 KOG0145 RNA-binding protein EL 99.1 7.3E-10 1.6E-14 90.1 10.6 85 15-99 271-356 (360)
66 KOG0146 RNA-binding protein ET 99.1 1.7E-10 3.6E-15 94.1 6.3 83 21-104 18-104 (371)
67 KOG4208 Nucleolar RNA-binding 99.1 6.3E-10 1.4E-14 87.6 8.4 85 17-101 44-130 (214)
68 KOG0124 Polypyrimidine tract-b 99.1 3.7E-10 7.9E-15 95.6 7.4 85 18-102 206-291 (544)
69 KOG0132 RNA polymerase II C-te 99.0 5.3E-10 1.2E-14 102.1 7.7 73 21-99 420-493 (894)
70 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.1E-09 2.4E-14 97.3 8.7 79 22-100 405-484 (940)
71 KOG4209 Splicing factor RNPS1, 99.0 7.8E-10 1.7E-14 90.3 6.9 85 17-101 96-180 (231)
72 KOG4206 Spliceosomal protein s 99.0 3.1E-09 6.8E-14 84.7 8.6 82 19-103 6-92 (221)
73 KOG0533 RRM motif-containing p 99.0 9.7E-09 2.1E-13 84.0 11.6 85 18-103 79-164 (243)
74 KOG4212 RNA-binding protein hn 98.9 2.3E-09 4.9E-14 92.7 7.6 74 19-97 533-607 (608)
75 KOG0110 RNA-binding protein (R 98.9 5.1E-09 1.1E-13 95.0 8.3 77 23-99 516-596 (725)
76 KOG0110 RNA-binding protein (R 98.9 1.7E-09 3.6E-14 98.1 4.8 82 20-101 611-693 (725)
77 KOG4211 Splicing factor hnRNP- 98.8 1.2E-08 2.6E-13 89.3 8.7 77 20-99 8-84 (510)
78 KOG0123 Polyadenylate-binding 98.8 1E-08 2.2E-13 89.3 8.1 71 23-99 2-73 (369)
79 KOG0106 Alternative splicing f 98.8 6.9E-09 1.5E-13 83.3 5.6 69 23-99 2-71 (216)
80 KOG1457 RNA binding protein (c 98.8 5.1E-08 1.1E-12 77.8 9.6 88 20-107 32-124 (284)
81 KOG1548 Transcription elongati 98.7 4.5E-08 9.7E-13 82.5 8.6 81 19-100 131-220 (382)
82 KOG0226 RNA-binding proteins [ 98.7 1.4E-08 3E-13 82.4 4.3 81 18-98 186-267 (290)
83 KOG1995 Conserved Zn-finger pr 98.7 9.9E-08 2.2E-12 80.8 8.4 85 18-102 62-155 (351)
84 KOG4211 Splicing factor hnRNP- 98.6 2.2E-06 4.8E-11 75.4 16.0 83 16-99 97-180 (510)
85 KOG4454 RNA binding protein (R 98.6 1.7E-08 3.6E-13 80.3 2.4 76 20-97 7-83 (267)
86 KOG4660 Protein Mei2, essentia 98.6 3.1E-08 6.8E-13 87.9 4.1 73 17-94 70-143 (549)
87 KOG4849 mRNA cleavage factor I 98.6 9.9E-07 2.1E-11 74.7 11.5 77 19-95 77-156 (498)
88 KOG0151 Predicted splicing reg 98.5 2.4E-07 5.2E-12 84.4 7.2 82 19-100 171-256 (877)
89 PF04059 RRM_2: RNA recognitio 98.4 2.1E-06 4.6E-11 60.7 9.1 78 23-100 2-86 (97)
90 KOG0147 Transcriptional coacti 98.4 6.1E-08 1.3E-12 85.9 1.0 88 17-104 174-261 (549)
91 KOG4210 Nuclear localization s 98.3 5.9E-07 1.3E-11 75.7 5.0 81 21-101 183-264 (285)
92 KOG1190 Polypyrimidine tract-b 98.3 7.4E-06 1.6E-10 70.7 10.8 73 22-99 297-371 (492)
93 KOG0120 Splicing factor U2AF, 98.3 1.3E-06 2.8E-11 78.0 5.7 88 18-105 285-373 (500)
94 KOG1457 RNA binding protein (c 98.2 1.7E-06 3.6E-11 69.3 4.6 66 18-87 206-272 (284)
95 PF11608 Limkain-b1: Limkain b 98.1 2.3E-05 5E-10 53.6 7.6 67 23-99 3-75 (90)
96 PF08777 RRM_3: RNA binding mo 98.0 2.3E-05 4.9E-10 56.5 6.8 69 23-97 2-76 (105)
97 KOG0129 Predicted RNA-binding 97.9 3.2E-05 6.9E-10 68.6 7.7 65 20-84 368-433 (520)
98 KOG0106 Alternative splicing f 97.9 1.4E-05 3.1E-10 64.3 4.3 72 19-98 96-168 (216)
99 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.9E-05 1.1E-09 47.8 5.5 52 23-81 2-53 (53)
100 KOG1855 Predicted RNA-binding 97.7 4E-05 8.8E-10 66.6 4.9 68 18-85 227-307 (484)
101 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00033 7.1E-09 49.9 7.3 77 21-98 5-89 (100)
102 KOG1190 Polypyrimidine tract-b 97.6 5.7E-05 1.2E-09 65.4 3.2 74 20-99 26-102 (492)
103 COG5175 MOT2 Transcriptional r 97.5 0.00024 5.1E-09 60.3 6.6 79 21-99 113-201 (480)
104 KOG0129 Predicted RNA-binding 97.5 0.00031 6.8E-09 62.4 7.5 61 21-82 258-324 (520)
105 KOG4206 Spliceosomal protein s 97.5 0.00045 9.7E-09 55.5 7.5 74 20-98 144-219 (221)
106 KOG4307 RNA binding protein RB 97.4 0.00073 1.6E-08 62.2 7.9 78 20-97 865-943 (944)
107 KOG0105 Alternative splicing f 97.3 0.0028 6E-08 49.8 9.7 64 17-87 110-174 (241)
108 KOG3152 TBP-binding protein, a 97.3 0.00022 4.8E-09 58.3 3.3 72 21-92 73-157 (278)
109 PF08952 DUF1866: Domain of un 97.2 0.0015 3.2E-08 49.4 6.9 55 38-100 52-106 (146)
110 KOG0128 RNA-binding protein SA 97.2 0.0003 6.4E-09 65.9 3.6 80 22-102 736-816 (881)
111 KOG1456 Heterogeneous nuclear 97.1 0.0039 8.5E-08 53.8 9.5 80 15-99 280-361 (494)
112 KOG0120 Splicing factor U2AF, 97.1 0.002 4.4E-08 57.9 7.3 61 38-98 425-489 (500)
113 KOG1365 RNA-binding protein Fu 97.0 0.0014 3E-08 56.6 5.5 77 22-99 280-360 (508)
114 KOG0128 RNA-binding protein SA 97.0 2.8E-05 6E-10 72.5 -5.2 70 21-90 666-735 (881)
115 KOG1365 RNA-binding protein Fu 97.0 0.00068 1.5E-08 58.5 3.4 73 22-95 161-237 (508)
116 KOG2314 Translation initiation 96.8 0.0044 9.4E-08 56.0 7.5 75 21-96 57-139 (698)
117 PF10309 DUF2414: Protein of u 96.7 0.013 2.9E-07 37.9 7.0 55 20-82 3-60 (62)
118 KOG1456 Heterogeneous nuclear 96.7 0.0053 1.2E-07 52.9 6.5 81 12-98 21-104 (494)
119 KOG1548 Transcription elongati 96.7 0.0082 1.8E-07 51.3 7.5 77 20-100 263-351 (382)
120 KOG4307 RNA binding protein RB 96.6 0.0023 4.9E-08 59.1 3.7 78 18-96 430-509 (944)
121 KOG0112 Large RNA-binding prot 96.2 0.0015 3.3E-08 61.7 0.5 80 18-98 368-448 (975)
122 KOG4285 Mitotic phosphoprotein 96.1 0.031 6.8E-07 47.0 7.9 67 25-98 200-267 (350)
123 KOG4676 Splicing factor, argin 96.1 0.0091 2E-07 51.8 4.9 77 21-97 6-85 (479)
124 KOG1996 mRNA splicing factor [ 96.1 0.021 4.5E-07 47.9 6.8 62 36-97 300-363 (378)
125 KOG2193 IGF-II mRNA-binding pr 96.0 0.0045 9.8E-08 54.2 2.6 75 23-105 2-80 (584)
126 PF15023 DUF4523: Protein of u 95.8 0.062 1.3E-06 40.6 7.6 74 18-98 82-159 (166)
127 KOG2202 U2 snRNP splicing fact 95.8 0.005 1.1E-07 50.5 1.9 61 38-99 84-146 (260)
128 KOG0115 RNA-binding protein p5 95.7 0.011 2.4E-07 48.5 3.5 60 23-83 32-91 (275)
129 PF08675 RNA_bind: RNA binding 95.7 0.052 1.1E-06 37.2 6.0 52 23-83 10-61 (87)
130 KOG0112 Large RNA-binding prot 95.4 0.024 5.1E-07 53.9 4.9 78 18-101 451-531 (975)
131 KOG2135 Proteins containing th 95.3 0.013 2.8E-07 52.0 2.7 72 25-102 375-447 (526)
132 KOG2416 Acinus (induces apopto 95.3 0.027 5.8E-07 51.4 4.6 79 15-99 437-520 (718)
133 KOG2068 MOT2 transcription fac 94.5 0.014 3.1E-07 49.6 0.8 78 22-99 77-161 (327)
134 KOG2591 c-Mpl binding protein, 94.5 0.073 1.6E-06 48.3 5.2 72 21-99 174-250 (684)
135 KOG2253 U1 snRNP complex, subu 94.4 0.034 7.3E-07 51.2 3.1 69 20-97 38-107 (668)
136 PF07576 BRAP2: BRCA1-associat 94.0 0.83 1.8E-05 33.0 9.1 66 22-89 13-80 (110)
137 KOG4210 Nuclear localization s 94.0 0.059 1.3E-06 45.6 3.5 79 21-99 87-166 (285)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.08 1.7E-06 41.6 3.5 80 20-99 5-96 (176)
139 PF03880 DbpA: DbpA RNA bindin 92.2 1.3 2.8E-05 29.4 7.4 66 24-98 2-74 (74)
140 PRK11634 ATP-dependent RNA hel 90.4 7.7 0.00017 36.6 13.1 69 22-99 486-561 (629)
141 PF04847 Calcipressin: Calcipr 88.9 1.5 3.3E-05 34.7 6.1 59 35-99 8-69 (184)
142 KOG4574 RNA-binding protein (c 86.6 0.5 1.1E-05 45.1 2.5 74 24-103 300-376 (1007)
143 KOG4660 Protein Mei2, essentia 86.2 1.6 3.4E-05 39.8 5.4 55 46-100 413-472 (549)
144 PF11767 SET_assoc: Histone ly 85.6 6.8 0.00015 25.6 6.8 53 33-94 11-64 (66)
145 KOG4676 Splicing factor, argin 85.2 0.1 2.2E-06 45.5 -2.5 66 22-91 151-216 (479)
146 KOG4454 RNA binding protein (R 83.5 0.24 5.1E-06 40.1 -1.0 65 18-83 76-144 (267)
147 KOG4483 Uncharacterized conser 83.0 4.2 9.1E-05 35.9 6.3 61 18-85 387-448 (528)
148 smart00596 PRE_C2HC PRE_C2HC d 78.1 4.7 0.0001 26.6 3.9 60 37-98 2-62 (69)
149 KOG0804 Cytoplasmic Zn-finger 75.1 15 0.00033 33.0 7.4 66 22-89 74-141 (493)
150 PF03468 XS: XS domain; Inter 73.5 8.8 0.00019 28.0 4.8 47 34-83 29-76 (116)
151 PF10567 Nab6_mRNP_bdg: RNA-re 70.6 8.9 0.00019 32.5 4.7 84 18-101 11-108 (309)
152 KOG4410 5-formyltetrahydrofola 69.5 8.4 0.00018 32.6 4.3 48 22-74 330-377 (396)
153 PF07530 PRE_C2HC: Associated 68.3 12 0.00026 24.5 4.1 60 37-98 2-62 (68)
154 PF15513 DUF4651: Domain of un 66.4 16 0.00034 23.6 4.2 18 37-54 9-26 (62)
155 KOG2193 IGF-II mRNA-binding pr 53.4 1.4 3E-05 39.1 -3.0 74 21-98 79-154 (584)
156 COG0724 RNA-binding proteins ( 53.3 19 0.00042 28.4 3.8 54 18-71 221-274 (306)
157 PF07292 NID: Nmi/IFP 35 domai 49.0 24 0.00052 24.4 3.1 32 67-98 1-34 (88)
158 KOG2891 Surface glycoprotein [ 48.4 18 0.00039 30.6 2.8 35 21-55 148-194 (445)
159 PF11411 DNA_ligase_IV: DNA li 48.3 14 0.0003 21.1 1.5 16 32-47 19-34 (36)
160 PF07292 NID: Nmi/IFP 35 domai 44.4 13 0.00028 25.8 1.2 26 18-43 48-73 (88)
161 COG5193 LHP1 La protein, small 42.4 11 0.00024 33.3 0.8 61 21-81 173-243 (438)
162 KOG3875 Peroxisomal biogenesis 40.9 1.3E+02 0.0028 26.0 6.8 10 160-169 77-86 (362)
163 KOG2318 Uncharacterized conser 39.2 51 0.0011 30.7 4.4 80 19-98 171-305 (650)
164 KOG4008 rRNA processing protei 37.8 28 0.00061 28.7 2.3 34 19-52 37-70 (261)
165 PF04026 SpoVG: SpoVG; InterP 36.3 76 0.0016 21.7 4.0 26 48-73 2-27 (84)
166 COG5353 Uncharacterized protei 35.2 2.1E+02 0.0045 22.0 6.5 54 23-76 88-154 (161)
167 KOG0156 Cytochrome P450 CYP2 s 34.6 73 0.0016 29.1 4.8 60 25-93 35-97 (489)
168 KOG4019 Calcineurin-mediated s 34.4 52 0.0011 26.1 3.2 73 21-99 9-88 (193)
169 PF02714 DUF221: Domain of unk 33.6 54 0.0012 27.8 3.6 30 67-98 1-31 (325)
170 PF09707 Cas_Cas2CT1978: CRISP 33.3 1.2E+02 0.0025 20.9 4.6 48 22-72 25-72 (86)
171 KOG4365 Uncharacterized conser 32.6 7.2 0.00016 34.9 -1.9 76 23-99 4-80 (572)
172 PRK11901 hypothetical protein; 32.1 1.1E+02 0.0024 26.5 5.1 49 33-83 253-303 (327)
173 PF15063 TC1: Thyroid cancer p 31.7 29 0.00063 23.3 1.3 31 18-48 21-51 (79)
174 KOG4213 RNA-binding protein La 30.2 1.5E+02 0.0032 23.5 5.2 50 34-83 118-169 (205)
175 COG5638 Uncharacterized conser 29.6 86 0.0019 28.1 4.1 41 15-55 139-184 (622)
176 PRK13259 regulatory protein Sp 28.6 1.1E+02 0.0024 21.4 3.8 26 48-73 2-27 (94)
177 PRK11558 putative ssRNA endonu 28.3 1.2E+02 0.0027 21.3 4.1 49 22-73 27-75 (97)
178 PF05189 RTC_insert: RNA 3'-te 27.8 1E+02 0.0022 21.5 3.7 46 24-71 12-64 (103)
179 TIGR03636 L23_arch archaeal ri 27.6 1.9E+02 0.0042 19.3 5.3 53 25-80 16-70 (77)
180 KOG2295 C2H2 Zn-finger protein 26.6 11 0.00024 34.7 -1.8 68 21-88 230-298 (648)
181 PHA01632 hypothetical protein 26.5 72 0.0016 20.1 2.3 19 27-45 21-39 (64)
182 PF13046 DUF3906: Protein of u 26.1 78 0.0017 20.5 2.5 33 35-69 31-63 (64)
183 PRK14548 50S ribosomal protein 24.8 2.3E+02 0.0051 19.3 5.2 53 26-81 24-78 (84)
184 KOG3668 Phosphatidylinositol t 24.2 54 0.0012 27.2 1.9 15 193-207 187-201 (269)
185 COG0030 KsgA Dimethyladenosine 23.9 79 0.0017 26.4 2.8 35 22-56 95-129 (259)
186 COG3254 Uncharacterized conser 23.3 2.9E+02 0.0062 19.8 5.2 42 38-82 28-69 (105)
187 PF09702 Cas_Csa5: CRISPR-asso 22.8 1.1E+02 0.0023 21.9 2.9 24 18-44 60-83 (105)
188 COG2088 SpoVG Uncharacterized 22.7 1.3E+02 0.0028 20.9 3.2 26 48-73 2-27 (95)
189 CHL00123 rps6 ribosomal protei 22.7 2.7E+02 0.0059 19.3 6.2 57 24-82 10-80 (97)
190 KOG3424 40S ribosomal protein 22.5 3.2E+02 0.007 20.1 5.5 46 33-79 34-84 (132)
191 PF14401 RLAN: RimK-like ATPgr 21.8 2E+02 0.0043 21.9 4.5 63 19-81 84-147 (153)
192 TIGR01873 cas_CT1978 CRISPR-as 21.4 96 0.0021 21.4 2.4 49 22-73 25-74 (87)
193 PF10281 Ish1: Putative stress 21.0 96 0.0021 17.4 2.0 17 33-49 3-19 (38)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.88 E-value=1.3e-21 Score=149.10 Aligned_cols=83 Identities=37% Similarity=0.677 Sum_probs=77.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
....++|||+|||+++||++|+++|++||+|++|+|+.|+.|++++|||||+|++.++|++||+ +++.+|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999996 699999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8543
No 2
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=148.62 Aligned_cols=86 Identities=77% Similarity=1.299 Sum_probs=82.4
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
.+..|.+.+|||||+|+|+++.|+|+++|++||+|++..|+.|+.|+++|||+||+|.|.++|++||+....+|+||+..
T Consensus 5 ~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 5 NPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred CCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccc
Q 028402 95 CNLACL 100 (209)
Q Consensus 95 v~~a~~ 100 (209)
|.++..
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 999876
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=1.2e-18 Score=150.24 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=75.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC--eEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRANCN 96 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g--~~l~v~ 96 (209)
...++|||+|||+++||++|+++|++||+|++|+|++|+.|+++++||||+|++.++|++||+ +++..|.+ ++|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999997 58888866 688888
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
+++...
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 886543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.3e-17 Score=143.82 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=77.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
....+|||+|||++++|++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|.+||+ +|+..|+|+.|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 344579999999999999999999999999999999999999999999999999999999996 6999999999999998
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 6543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=1.1e-17 Score=144.21 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=78.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
.++...++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++||+ +++.+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345567899999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred EEccc
Q 028402 96 NLACL 100 (209)
Q Consensus 96 ~~a~~ 100 (209)
+++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98754
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1e-17 Score=121.96 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=75.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.++++||||||++.++||+|.++|+++|+|+.|.+-.|+.+..+.|||||+|.+.++|+.||. .++..|+.+.|+|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 467899999999999999999999999999999999999999999999999999999999998 5999999999999987
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=4.2e-17 Score=140.63 Aligned_cols=81 Identities=30% Similarity=0.429 Sum_probs=76.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
+.++|||+|||.++||++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+ +++..|.|+.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999996 69999999999999886
Q ss_pred cc
Q 028402 100 LG 101 (209)
Q Consensus 100 ~~ 101 (209)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 54
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=3.4e-16 Score=142.05 Aligned_cols=75 Identities=28% Similarity=0.381 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhC--CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
..++|||+||++++||++|+++|++| |+|++|++++ +||||+|++.++|++||+ +|+.+|+|+.|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 9999998764 499999999999999996 699999999999999
Q ss_pred ccccCC
Q 028402 98 ACLGVQ 103 (209)
Q Consensus 98 a~~~~~ 103 (209)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 976543
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.4e-16 Score=129.27 Aligned_cols=79 Identities=34% Similarity=0.519 Sum_probs=72.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||||++.-+||++|++.|+.||.|.+|++.++ +||+||.|++.|+|.+||. +|+.+|.|..++|.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4457799999999999999999999999999999999987 6799999999999999995 69999999999999
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
|-+...
T Consensus 234 WGKe~~ 239 (321)
T KOG0148|consen 234 WGKEGD 239 (321)
T ss_pred ccccCC
Confidence 986443
No 10
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=7.4e-17 Score=132.31 Aligned_cols=100 Identities=28% Similarity=0.470 Sum_probs=87.0
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||+.|+.+++|.+|+..|++||.|+.|.|+.|+.||+++|||||+|+++.+.++|.+ .++..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34688999999999999999999999999999999999999999999999999999999999997 49999999999999
Q ss_pred EccccCCCCCCCCCCCCCCCC
Q 028402 97 LACLGVQRSKPSTPKHGGGGG 117 (209)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~g 117 (209)
+..-+..+.+....-+|+-++
T Consensus 177 vERgRTvkgW~PRRLGGGLGg 197 (335)
T KOG0113|consen 177 VERGRTVKGWLPRRLGGGLGG 197 (335)
T ss_pred ecccccccccccccccCCcCC
Confidence 987666665554444444333
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.8e-16 Score=105.04 Aligned_cols=69 Identities=36% Similarity=0.645 Sum_probs=65.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
|||+|||+++|+++|+++|++||.|..+.+..+ .+++++++|||+|.+.++|++|++ +++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 678999999999999999999997 699999999875
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=6e-16 Score=126.69 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=70.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
.++|||+||++.+||++|+++|+.||+|++|+|++|+. ++|||||+|++.++|+.||.+++..|.|+.|+|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999998864 5789999999999999999999999999999999874
No 13
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=8.8e-16 Score=118.52 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||.++.|.||+++|.+||.|.+|+|...+ ....||||+|++..+|+.||. .++..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999985432 356799999999999999996 5999999999999998
Q ss_pred c
Q 028402 99 C 99 (209)
Q Consensus 99 ~ 99 (209)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 4
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.4e-16 Score=124.18 Aligned_cols=82 Identities=27% Similarity=0.349 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|++||.+||||||+|.++++|.+||+ +++.-.+.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 466789999999999999999999999999999999999999999999999999999999996 6999999999999999
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 764
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=4.5e-16 Score=129.20 Aligned_cols=88 Identities=28% Similarity=0.514 Sum_probs=78.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.....++|+|+|||+...|-||+.+|++||+|.+|+|+.+- .-+|||+||+|++.++|++|-+ +++..|.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 33467899999999999999999999999999999999873 4589999999999999999995 69999999999999
Q ss_pred EccccCCCCCC
Q 028402 97 LACLGVQRSKP 107 (209)
Q Consensus 97 ~a~~~~~~~~~ 107 (209)
.+..++..++.
T Consensus 170 ~ATarV~n~K~ 180 (376)
T KOG0125|consen 170 NATARVHNKKK 180 (376)
T ss_pred ccchhhccCCc
Confidence 99887665543
No 16
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.65 E-value=7.3e-16 Score=120.78 Aligned_cols=86 Identities=26% Similarity=0.443 Sum_probs=80.5
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+.+.+...+|-|-||..-++.++|+.+|++||.|-+|.|++|+.|..++|||||.|.+..+|++|++ +++.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 5566788899999999999999999999999999999999999999999999999999999999996 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|.+|+-.
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9988643
No 17
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.7e-15 Score=115.86 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=70.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
-.++||||||+..+++.||+.+|.+||.|..|.|-++ ..|||||||++..+|++|+. +++..|+|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999998775 48999999999999999995 79999999999999986
Q ss_pred ccCC
Q 028402 100 LGVQ 103 (209)
Q Consensus 100 ~~~~ 103 (209)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 4433
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=1.9e-15 Score=100.71 Aligned_cols=69 Identities=32% Similarity=0.600 Sum_probs=62.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Q 028402 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRAN 94 (209)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~ 94 (209)
|||+|||+++++++|+++|+.+|.|.++.+..+++ ++.+++|||+|.+.++|++|++. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 89999999999999999999986 66899999874
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=3.1e-15 Score=136.20 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+||++++++++|+++|+.||+|++|+|.+|+.+++++|||||+|.+.++|.+||+ +|+.+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 355799999999999999999999999999999999999999999999999999999999996 6999999999999998
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
....
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 6543
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=6.9e-15 Score=126.42 Aligned_cols=81 Identities=30% Similarity=0.411 Sum_probs=73.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.+.|||.||+.++|||.|+++|++||+|++|+.++| ||||+|.++++|.+|++ +|+.+|+|..|.|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 36688999999999999999999999999999998876 99999999999999996 6999999999999999
Q ss_pred cccCCCCCCC
Q 028402 99 CLGVQRSKPS 108 (209)
Q Consensus 99 ~~~~~~~~~~ 108 (209)
++..+++..+
T Consensus 329 KP~~k~k~~r 338 (506)
T KOG0117|consen 329 KPVDKKKKER 338 (506)
T ss_pred CChhhhccch
Confidence 9876665543
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=1.3e-14 Score=132.79 Aligned_cols=83 Identities=29% Similarity=0.452 Sum_probs=76.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
....++|||+||++++|+++|+++|++||+|++|+|+.| .+++++|||||+|.+.++|++||+ +++..|.|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999999 689999999999999999999996 699999999999999
Q ss_pred ccccC
Q 028402 98 ACLGV 102 (209)
Q Consensus 98 a~~~~ 102 (209)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 87553
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3.7e-15 Score=135.71 Aligned_cols=79 Identities=30% Similarity=0.553 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+||+++++|++|+++|++||+|.+|+|+.|+.|++++|||||+|.+.++|++||+ +|+..|+|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999999999999999999999999999996 6999999999999754
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=6.9e-15 Score=131.24 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=77.1
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
+...++|||+|||.++++++|+++|++||+|.+|+|+.|+.+++++|||||+|.+.++|++||.+++..|.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 028402 99 CL 100 (209)
Q Consensus 99 ~~ 100 (209)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 43
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=9.6e-15 Score=133.66 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
.+|||+|||.++||++|+++|++||+|++|+|.+|+.|++++|||||+|.+.++|++||+ ++...|.|+.|+|.++.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 379999999999999999999999999999999999999999999999999999999996 58888999999999874
No 25
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=117.44 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
...+|||+||++.+||++|+++|+.||+|++|+|++|. +.++||||+|++.++++.||.+++..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999985 34579999999999999999999999999999988753
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.55 E-value=5.2e-14 Score=127.15 Aligned_cols=82 Identities=24% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||..+|+++|+++|+.||.|+.+.|+.++.++.++|||||+|.+.++|..||+ +++..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999999999999999999999999999996 6999999999999998
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 644
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=1.9e-14 Score=125.30 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCH--HHHHHHHH-hCCCccCCeEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP--EAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~--~~a~~al~-~~~~~l~g~~l~v 95 (209)
.....+||||||++++++++|+.+|+.||.|.+|.|+ ++|| ||||||+|.+. +++.+||+ +++.++.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456799999999999999999999999999999999 4467 99999999976 67899996 6999999999999
Q ss_pred EEccc
Q 028402 96 NLACL 100 (209)
Q Consensus 96 ~~a~~ 100 (209)
..|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99875
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=2.3e-14 Score=130.20 Aligned_cols=74 Identities=31% Similarity=0.455 Sum_probs=66.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANC 95 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~-g~~l~v 95 (209)
..++|||+|||++++|++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+ +++.+|. ++.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 4589999999999999999999999999999999999 789999999999999999999997 5777764 555444
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=6.2e-14 Score=125.10 Aligned_cols=79 Identities=32% Similarity=0.588 Sum_probs=75.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
..++|||+|||.++||++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999999999999999999999999996 69999999999999975
No 30
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.5e-14 Score=105.22 Aligned_cols=88 Identities=23% Similarity=0.313 Sum_probs=81.4
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
+|+.+....-|||.++.+++||++|.+.|..||+|+.|.|.+|+.||-.||||+|+|++.++|++||+ +|+..|.+..|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 45666677889999999999999999999999999999999999999999999999999999999996 69999999999
Q ss_pred EEEEccccC
Q 028402 94 NCNLACLGV 102 (209)
Q Consensus 94 ~v~~a~~~~ 102 (209)
.|.|+-.+.
T Consensus 145 ~VDw~Fv~g 153 (170)
T KOG0130|consen 145 SVDWCFVKG 153 (170)
T ss_pred eEEEEEecC
Confidence 999986543
No 31
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.2e-15 Score=115.97 Aligned_cols=84 Identities=30% Similarity=0.428 Sum_probs=78.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++||||+|..+++|.-|...|-.||.|++|.++.|-+++++|||+||+|+..|+|.+||. +|..+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 356799999999999999999999999999999999999999999999999999999999996 7999999999999999
Q ss_pred cccCC
Q 028402 99 CLGVQ 103 (209)
Q Consensus 99 ~~~~~ 103 (209)
++...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87543
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=1.1e-13 Score=90.89 Aligned_cols=71 Identities=32% Similarity=0.549 Sum_probs=65.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
+|||+|||.++++++|+++|++||.|.++.+..++ +.++++|||+|.+.++|++|++ +++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 6788999999999999999997 48888999988763
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.2e-14 Score=114.94 Aligned_cols=83 Identities=37% Similarity=0.511 Sum_probs=77.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.....|||+.|..+++-++||+.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||. +++.-|.+|.|+-.|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 345689999999999999999999999999999999999999999999999999999999996 7999999999999999
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
..+.
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 6443
No 34
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=3.2e-15 Score=115.08 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.++.-|||||||.+.||.||..+|++||+|.+|.|++|+.||+++||||+.|++..+..-|+. +|+..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 356689999999999999999999999999999999999999999999999999988877885 6999999999999865
Q ss_pred c
Q 028402 99 C 99 (209)
Q Consensus 99 ~ 99 (209)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=1.3e-13 Score=90.06 Aligned_cols=70 Identities=36% Similarity=0.579 Sum_probs=64.7
Q ss_pred EcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 27 VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 27 VgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
|+|||.++++++|+++|++||.|..+.+..++.+++++++|||+|.+.++|.+|++ +++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988889999999999999999999996 48888999988763
No 36
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.50 E-value=3.1e-13 Score=118.21 Aligned_cols=84 Identities=26% Similarity=0.396 Sum_probs=72.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
...+|||.|||+++++++|+++|..||.|+...|..-...++..+||||+|.+.++++.||+.+-..|++++|.|+..++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34569999999999999999999999999999887654335555999999999999999999888889999999998876
Q ss_pred cCCC
Q 028402 101 GVQR 104 (209)
Q Consensus 101 ~~~~ 104 (209)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5444
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.1e-13 Score=112.10 Aligned_cols=85 Identities=27% Similarity=0.408 Sum_probs=79.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
++..+.|.|.-||.++|+|||+.+|...|+|++|++++|+.+|++-||+||.|-+.++|++||. +|+..|..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4455689999999999999999999999999999999999999999999999999999999996 699999999999999
Q ss_pred ccccCC
Q 028402 98 ACLGVQ 103 (209)
Q Consensus 98 a~~~~~ 103 (209)
+++...
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 987644
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=112.17 Aligned_cols=78 Identities=29% Similarity=0.604 Sum_probs=74.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEcc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLAC 99 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~v~~a~ 99 (209)
.++|||+|||.++|+++|+++|.+||.|..+.+..++.+++++|||||+|.+.+++..|++. ++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 58999999999999999999999999999999999999999999999999999999999974 8899999999999964
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.49 E-value=6.5e-14 Score=123.04 Aligned_cols=84 Identities=29% Similarity=0.529 Sum_probs=78.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcccc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~~ 101 (209)
+.|||||+|++++|++|.++|+..|.|.+++++.|++||+++||+|++|++.+++++|++ +|+.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999997 5999999999999999655
Q ss_pred CCCCC
Q 028402 102 VQRSK 106 (209)
Q Consensus 102 ~~~~~ 106 (209)
..+.+
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 54443
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.4e-13 Score=118.43 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc-CCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI-DGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l-~g~~l~v~~ 97 (209)
...+-||||.||.++.|++|.-+|++.|+|-+++|+.|+.+|.+||||||+|.+.++|++||+ +|+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999996 588876 588777664
Q ss_pred c
Q 028402 98 A 98 (209)
Q Consensus 98 a 98 (209)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=5.2e-14 Score=120.64 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=73.7
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc-c--CCeEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV-I--DGRRANCN 96 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~-l--~g~~l~v~ 96 (209)
..++||||.|+..+||+|++++|++||.|++|.|++|.+ +.+||||||+|.+.+.|..||+ +|+.. + +..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 467999999999999999999999999999999999974 8999999999999999999996 56553 3 45689999
Q ss_pred EccccCCCC
Q 028402 97 LACLGVQRS 105 (209)
Q Consensus 97 ~a~~~~~~~ 105 (209)
++.+.+.+.
T Consensus 202 FADtqkdk~ 210 (510)
T KOG0144|consen 202 FADTQKDKD 210 (510)
T ss_pred ecccCCCch
Confidence 997766554
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=6.2e-13 Score=119.75 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCC-CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 19 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
..+.++|||+||++ .+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+ +++..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999999873 6899999999999999996 79999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 88543
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=1.3e-12 Score=86.13 Aligned_cols=73 Identities=32% Similarity=0.566 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
+|+|+|||.++++++|+++|+.+|.|..+.+..++.+ ..+++|||+|.+.++|..|++ +++..+.++++.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988754 778999999999999999997 478779999988863
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=1.6e-13 Score=105.67 Aligned_cols=80 Identities=28% Similarity=0.390 Sum_probs=75.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
....+|||+||+..++|+.|.++|-+.|.|.+++|++|+.+...+|||||+|.++++|+-||. ++...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456799999999999999999999999999999999999999999999999999999999997 5888899999999988
Q ss_pred c
Q 028402 99 C 99 (209)
Q Consensus 99 ~ 99 (209)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 5
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.9e-13 Score=116.17 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-h-CCCccCCe--EE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGR--RA 93 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~-~~~~l~g~--~l 93 (209)
.|.+.-++|||-+|.+++|.||+++|++||.|.+|.|++||.|+.++|||||.|.+.++|.+|+. + |.+.|.|- .|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34566799999999999999999999999999999999999999999999999999999999995 4 55666654 56
Q ss_pred EEEEcccc
Q 028402 94 NCNLACLG 101 (209)
Q Consensus 94 ~v~~a~~~ 101 (209)
.|+++...
T Consensus 110 qvk~Ad~E 117 (510)
T KOG0144|consen 110 QVKYADGE 117 (510)
T ss_pred eecccchh
Confidence 66666543
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=8.3e-13 Score=118.91 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH---hCCCccCCeEEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV---DAAPVIDGRRANCNL 97 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~---~~~~~l~g~~l~v~~ 97 (209)
+++.|||+|||+++||++|+++|++||.|++|.|+++ +++|||+|++.++|++||. .++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3679999999999999999999999999999999864 5799999999999999996 267889999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8643
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=7.1e-13 Score=116.64 Aligned_cols=87 Identities=34% Similarity=0.506 Sum_probs=76.9
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhC------C-CccC
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA------A-PVID 89 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~------~-~~l~ 89 (209)
.++....+|||.|||+++||++|.+.|++||+|..+.|+.++.|++++|.|||.|.+..++.+||+.- + ..|+
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 34445689999999999999999999999999999999999999999999999999999999999642 3 4589
Q ss_pred CeEEEEEEccccCC
Q 028402 90 GRRANCNLACLGVQ 103 (209)
Q Consensus 90 g~~l~v~~a~~~~~ 103 (209)
||.|.|..+.++..
T Consensus 367 GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 367 GRLLKVTLAVTRKE 380 (678)
T ss_pred ccEEeeeeccchHH
Confidence 99999998876543
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.41 E-value=2.5e-13 Score=114.77 Aligned_cols=85 Identities=40% Similarity=0.744 Sum_probs=78.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
+.++|||++|+|+++|+.|++.|.+||+|.+|.+++|+.+++++||+||+|++.+.+.++|....+.|+++.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 77899999999999999999999999999999999999999999999999999999999888888899999999998876
Q ss_pred cCCCC
Q 028402 101 GVQRS 105 (209)
Q Consensus 101 ~~~~~ 105 (209)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 65433
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.40 E-value=2.8e-12 Score=108.46 Aligned_cols=85 Identities=33% Similarity=0.599 Sum_probs=79.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
..++|||++||.+++|++|++.|++||.|.++.++.|+.+.++++|+||+|.+++++++++....++|+++.++|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCC
Q 028402 101 GVQRS 105 (209)
Q Consensus 101 ~~~~~ 105 (209)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 75544
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.40 E-value=1.9e-12 Score=111.35 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=72.7
Q ss_pred CccEEEEcCCCCCCcHHHHHHHH-hhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
..+.+||.|||+++.+.+|+++| ++-|+|+.|+|+.|. +++++|||.|||+++|.+++|+| ++.+++.||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34569999999999999999999 588999999999995 69999999999999999999998 5999999999999987
Q ss_pred cc
Q 028402 99 CL 100 (209)
Q Consensus 99 ~~ 100 (209)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 44
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=8.8e-12 Score=87.91 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
.+-.+-|||.|||+++|.|++.++|.+||.|..|+|-..++ .+|-|||.|++..+|++|++ +++..++++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34567899999999999999999999999999999977654 58999999999999999997 599999999999887
Q ss_pred ccc
Q 028402 98 ACL 100 (209)
Q Consensus 98 a~~ 100 (209)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 543
No 52
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=1.8e-12 Score=106.48 Aligned_cols=71 Identities=28% Similarity=0.504 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcccc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~~ 101 (209)
.+|||||||.++++.+|+.+|++||+|.+|+|+++ |+||+.++...++.||. +++-.|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 99999999999999997 7999999999999988655
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.33 E-value=2.1e-12 Score=113.80 Aligned_cols=85 Identities=31% Similarity=0.506 Sum_probs=77.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+..+|||+||.++++|++|+.+|+.||.|+.|.+.+|.+||+++||+||+|.+.++|.+|++ +|+.+|-|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 455569999999999999999999999999999999999999999999999999999999997 5999999999999876
Q ss_pred cccCCC
Q 028402 99 CLGVQR 104 (209)
Q Consensus 99 ~~~~~~ 104 (209)
..+...
T Consensus 356 ~~r~~~ 361 (549)
T KOG0147|consen 356 TERVDT 361 (549)
T ss_pred eeeccc
Confidence 554443
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=7e-12 Score=110.47 Aligned_cols=80 Identities=28% Similarity=0.461 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
+-.+|+|.||||.+.+.+|+.+|+.||.|.+|.|++.++ ++-+|||||.|.+..+|.+||+ +|+++|+||+|.|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 367899999999999999999999999999999998765 6677999999999999999997 59999999999999986
Q ss_pred cc
Q 028402 100 LG 101 (209)
Q Consensus 100 ~~ 101 (209)
.+
T Consensus 195 ~K 196 (678)
T KOG0127|consen 195 DK 196 (678)
T ss_pred cc
Confidence 54
No 55
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.3e-12 Score=107.40 Aligned_cols=81 Identities=31% Similarity=0.451 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al-~~~~~~l~g~~l~v~~a 98 (209)
.+...|||..|++-+|+++|+-+|+.||.|..|.+++|+.||.+-.||||+|++.+++++|. .|++..|+.++|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 35578999999999999999999999999999999999999999999999999999999999 67999999999999987
Q ss_pred cc
Q 028402 99 CL 100 (209)
Q Consensus 99 ~~ 100 (209)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 53
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.4e-11 Score=82.34 Aligned_cols=60 Identities=28% Similarity=0.471 Sum_probs=54.2
Q ss_pred HHHHHHHHh----hCCCEEEEE-EeecCCC--CCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 36 KETMEKYFE----QFGEILEAV-VITDKAT--GRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 36 e~~L~~~F~----~~G~i~~v~-i~~~~~t--g~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|.+.++|.+|+. +++..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7777767 8999999999999999999996 6999999999876
No 57
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=9.2e-12 Score=104.42 Aligned_cols=85 Identities=32% Similarity=0.425 Sum_probs=75.3
Q ss_pred hhccCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh--CCCc
Q 028402 10 AAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD--AAPV 87 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~--~~~~ 87 (209)
.+..-.+.+|...++|||++|...++|.+|+++|.+||+|+.|.++.. +++|||+|.+.++|+.|.+. +...
T Consensus 216 ~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lv 289 (377)
T KOG0153|consen 216 SAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLV 289 (377)
T ss_pred cccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceee
Confidence 334456778888899999999999999999999999999999999865 45999999999999999964 7778
Q ss_pred cCCeEEEEEEccc
Q 028402 88 IDGRRANCNLACL 100 (209)
Q Consensus 88 l~g~~l~v~~a~~ 100 (209)
|+|++|.|.|..+
T Consensus 290 I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 290 INGFRLKIKWGRP 302 (377)
T ss_pred ecceEEEEEeCCC
Confidence 9999999999965
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2e-12 Score=109.10 Aligned_cols=76 Identities=32% Similarity=0.580 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
-.|+||||.+.+++.|+.||..|..||.|++|.+..|+.|+++||||||+|+-.|.|+-|+| +|+..++||.|+|.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 46899999999999999999999999999999999999999999999999999999999997 59999999998886
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=4.9e-11 Score=76.04 Aligned_cols=55 Identities=31% Similarity=0.512 Sum_probs=49.1
Q ss_pred HHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 39 MEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 39 L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
|+++|++||+|+++.+..++ +++|||+|.+.++|++|++ +++..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997653 5899999999999999997 6999999999999875
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=9.4e-12 Score=102.27 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=74.3
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
..+..+++|+|+||.+.++.+||++.|++||.|.+|+|++| |+||+|+-.++|..|++ +++.+|.|++++|
T Consensus 73 sKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 73 SKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred ccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeee
Confidence 34567889999999999999999999999999999999876 99999999999999995 7999999999999
Q ss_pred EEccccCCCCCC
Q 028402 96 NLACLGVQRSKP 107 (209)
Q Consensus 96 ~~a~~~~~~~~~ 107 (209)
.++..+.+.+..
T Consensus 145 q~stsrlrtapg 156 (346)
T KOG0109|consen 145 QLSTSRLRTAPG 156 (346)
T ss_pred eeeccccccCCC
Confidence 999777655443
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.25 E-value=2.8e-11 Score=109.44 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=63.7
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhC------------CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF------------GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~ 83 (209)
+..+...++|||+|||+++|+++|+++|..+ +.|..+.+ .+.++||||+|.+.++|..||++
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3455677899999999999999999999875 23444444 34578999999999999999999
Q ss_pred CCCccCCeEEEEEEc
Q 028402 84 AAPVIDGRRANCNLA 98 (209)
Q Consensus 84 ~~~~l~g~~l~v~~a 98 (209)
++..|.|+.|+|...
T Consensus 243 ~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYSNVFLKIRRP 257 (509)
T ss_pred CCeEeeCceeEecCc
Confidence 999999999988643
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.4e-11 Score=100.34 Aligned_cols=84 Identities=29% Similarity=0.364 Sum_probs=78.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
+..+.|+|||=.||.+..+.||.++|-.||.|.+.++..|+.|..+|+|+||.|++..++++||. +|+..|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999995 79999999999998
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 87554
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.21 E-value=3.3e-11 Score=93.02 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEE-EEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
..+|||+||.++++|..|.+.|+.||.|.. -+|+++.+|+.+++|+||.|.+.+.+.+||+ +++..++.++++|+++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 479999999999999999999999998766 4899999999999999999999999999997 59999999999999984
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=9.6e-11 Score=101.92 Aligned_cols=84 Identities=32% Similarity=0.505 Sum_probs=74.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~v~~a~ 99 (209)
+...|||.||++++|..+|.++|+.||+|.+|++.++.+ | ++|| ||+|+++++|++||++ |+..+.+++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 344599999999999999999999999999999999964 4 9999 9999999999999974 9999999999998886
Q ss_pred ccCCCCCC
Q 028402 100 LGVQRSKP 107 (209)
Q Consensus 100 ~~~~~~~~ 107 (209)
.+..+..+
T Consensus 152 ~~~er~~~ 159 (369)
T KOG0123|consen 152 RKEEREAP 159 (369)
T ss_pred chhhhccc
Confidence 66555443
No 65
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=7.3e-10 Score=90.09 Aligned_cols=85 Identities=24% Similarity=0.278 Sum_probs=77.7
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
.+........|||=||.++++|.-|-++|..||.|..|+|++|..|.+-|||+||+..+-++|..||. +|+..+.+|.|
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 34445567789999999999999999999999999999999999999999999999999999999996 69999999999
Q ss_pred EEEEcc
Q 028402 94 NCNLAC 99 (209)
Q Consensus 94 ~v~~a~ 99 (209)
.|++..
T Consensus 351 QVsFKt 356 (360)
T KOG0145|consen 351 QVSFKT 356 (360)
T ss_pred EEEEec
Confidence 999874
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.7e-10 Score=94.12 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=71.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc-cCC--eEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV-IDG--RRANCN 96 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~-l~g--~~l~v~ 96 (209)
+.++||||.|...-+|||++.+|..||.|++|.+++.++ |.+||||||.|.+..+|..||. +++.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 568999999999999999999999999999999999874 8899999999999999999995 55543 444 358899
Q ss_pred EccccCCC
Q 028402 97 LACLGVQR 104 (209)
Q Consensus 97 ~a~~~~~~ 104 (209)
++...++|
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 88766554
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=6.3e-10 Score=87.56 Aligned_cols=85 Identities=25% Similarity=0.328 Sum_probs=75.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
..+....-++|..+|..+.|.++..+|.++ |.|+.+++-+++.||.++|||||+|++.+.|+-|.+ ||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556678999999999999999999988 888999999999999999999999999999999987 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9886544
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3.7e-10 Score=95.64 Aligned_cols=85 Identities=16% Similarity=0.336 Sum_probs=77.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
+.....+|||..+.++.+|+||+.+|+.||+|..|.+-+++.++.+|||+||+|.+..+...||. +|-..|+|..|+|-
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34567899999999999999999999999999999999999889999999999999999999996 69999999999998
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
.+....
T Consensus 286 k~vTPP 291 (544)
T KOG0124|consen 286 KCVTPP 291 (544)
T ss_pred cccCCC
Confidence 775443
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.04 E-value=5.3e-10 Score=102.10 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=67.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
-+++||||.|+..++|.||+.+|+.||+|.+|.++-. ++||||+.....+|.+|+. ++...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4689999999999999999999999999999988754 7899999999999999995 68888999999999975
No 70
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.02 E-value=1.1e-09 Score=97.30 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=73.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEccc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~ 100 (209)
.++|||.+|...+...+|+.+|++||+|.-.+++++..+--.++|+||++.+.++|.+||+ ++.++|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 5789999999999999999999999999999999998888889999999999999999997 599999999999998764
No 71
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.01 E-value=7.8e-10 Score=90.30 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=79.6
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
..+.+.+++||+|+.+.+|.+++...|+.||.|..+.|+.|+.++.+++|+||+|.+.+.++.++.+++..|.++.++|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
..+.+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88554
No 72
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.97 E-value=3.1e-09 Score=84.74 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHH----HHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEK----YFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
..+..+|||.||++.+..++|+. +|++||+|.+|...+ |.+.+|=|||.|.+.+.|-.|+. +++..+-|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34555999999999999999888 999999999998764 57789999999999999999996 69999999999
Q ss_pred EEEEccccCC
Q 028402 94 NCNLACLGVQ 103 (209)
Q Consensus 94 ~v~~a~~~~~ 103 (209)
+|.+|+.+.+
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999875543
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.96 E-value=9.7e-09 Score=84.02 Aligned_cols=85 Identities=28% Similarity=0.406 Sum_probs=75.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.+....+|+|.||+..++++||+++|..||+++.+.+..|+ +|++.|.|-|.|...++|.+|++ .++..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556899999999999999999999999999999998886 69999999999999999999997 48889999999988
Q ss_pred EccccCC
Q 028402 97 LACLGVQ 103 (209)
Q Consensus 97 ~a~~~~~ 103 (209)
+......
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 7654433
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.94 E-value=2.3e-09 Score=92.68 Aligned_cols=74 Identities=26% Similarity=0.503 Sum_probs=67.1
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
..+.++|||.|||+++|+..|++-|..||.|+.++|+. .++++| .|.|.+.++|++||. +++..|+|+.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45778899999999999999999999999999999954 477777 899999999999997 499999999999986
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=5.1e-09 Score=95.00 Aligned_cols=77 Identities=32% Similarity=0.542 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCC---CcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg---~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
++|||.||++++|.++|...|.+.|.|.++.|...++.. -+.||+||+|.+.++|++|++ ++++.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999988765422 244999999999999999997 5999999999999998
Q ss_pred c
Q 028402 99 C 99 (209)
Q Consensus 99 ~ 99 (209)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 6
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.7e-09 Score=98.10 Aligned_cols=82 Identities=27% Similarity=0.423 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|+|.|||+..+-.+++++|..||.|.+|+|+.....+.++|||||+|-+..+|.+|+. +..+.|.||+|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 346799999999999999999999999999999999876677889999999999999999996 5777899999999998
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 643
No 77
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.85 E-value=1.2e-08 Score=89.32 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=67.4
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
....-|-+.+|||++|++||++||+.++ |+++.+.+ .+|+..|-|||+|++++++++|++++...+..+-|+|..+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 3445677889999999999999999995 88866655 47999999999999999999999999999999999998764
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1e-08 Score=89.30 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
.+|||| +++||.+|.++|+..|+|.+|++.+|. | +-|||||.|.+.++|++||. +|...+.|++|+|-|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 478999 899999999999999999999999998 6 99999999999999999996 69999999999999874
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=6.9e-09 Score=83.26 Aligned_cols=69 Identities=28% Similarity=0.563 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeEEEEEEcc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al-~~~~~~l~g~~l~v~~a~ 99 (209)
.+|||++||+.+.+.+|+++|..||+|.+|.+. .+|+||+|++..+|..|| .+++.+|++.++.|+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 579999999999999999999999999999874 569999999999999999 579999999988888873
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.78 E-value=5.1e-08 Score=77.84 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEee-cCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC---CeEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVIT-DKATGRSKGYGFVTFREPEAAMKACV-DAAPVID---GRRAN 94 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~-~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~---g~~l~ 94 (209)
...++|||.+||.++.-.||..+|..|-..+.+.|.. ++....-+-+|||+|.+..+|.+|+. +|+..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4579999999999999999999999986666665533 22212234799999999999999995 6998876 66799
Q ss_pred EEEccccCCCCCC
Q 028402 95 CNLACLGVQRSKP 107 (209)
Q Consensus 95 v~~a~~~~~~~~~ 107 (209)
|++++...+++++
T Consensus 112 iElAKSNtK~kr~ 124 (284)
T KOG1457|consen 112 IELAKSNTKRKRR 124 (284)
T ss_pred eeehhcCcccccC
Confidence 9998766655543
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.74 E-value=4.5e-08 Score=82.48 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=71.8
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~ 89 (209)
....++|||+|||.++|.+++.++|++||-|.+ |+|-++.. |+.+|=|.|.|...++++-||. ++...|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445678999999999999999999999998754 67888764 9999999999999999999997 4999999
Q ss_pred CeEEEEEEccc
Q 028402 90 GRRANCNLACL 100 (209)
Q Consensus 90 g~~l~v~~a~~ 100 (209)
|++|+|+.|+-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998764
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.71 E-value=1.4e-08 Score=82.39 Aligned_cols=81 Identities=32% Similarity=0.544 Sum_probs=73.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al-~~~~~~l~g~~l~v~ 96 (209)
.++...+||.|.|.-+++++.|-..|.+|-.-...++++|+.|++++||+||.|.+.+++.+|+ ++++..++.+.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3456679999999999999999999999988888999999999999999999999999999999 579999999988776
Q ss_pred Ec
Q 028402 97 LA 98 (209)
Q Consensus 97 ~a 98 (209)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 54
No 83
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.67 E-value=9.9e-08 Score=80.83 Aligned_cols=85 Identities=27% Similarity=0.291 Sum_probs=75.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCcc
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVI 88 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l 88 (209)
+.....+|||-+|+..+++++|.++|.++|.|.. |.|-+|++|++.|+-|.|.|.+...|++||+. ++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3556679999999999999999999999998854 66788999999999999999999999999985 99999
Q ss_pred CCeEEEEEEccccC
Q 028402 89 DGRRANCNLACLGV 102 (209)
Q Consensus 89 ~g~~l~v~~a~~~~ 102 (209)
.+..|+|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999886444
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.63 E-value=2.2e-06 Score=75.38 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=68.0
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE-EEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
+.+......|-+.+||+.|||+||.+||+..-.+.. |.++.++ .+++.|-|||.|++.+.|++||..+...|..+-|+
T Consensus 97 ~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIE 175 (510)
T KOG4211|consen 97 PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIE 175 (510)
T ss_pred CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEE
Confidence 334356678889999999999999999988754444 4455555 57899999999999999999999888889999999
Q ss_pred EEEcc
Q 028402 95 CNLAC 99 (209)
Q Consensus 95 v~~a~ 99 (209)
|..+.
T Consensus 176 vF~Ss 180 (510)
T KOG4211|consen 176 VFRSS 180 (510)
T ss_pred eehhH
Confidence 88764
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=1.7e-08 Score=80.34 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~v~~ 97 (209)
+..++|||+|+...++|+.|.++|-+-|.|.+|.|..+++ ++.| ||||+|+++.++.-|+++ |+..+.++.+.|..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3457899999999999999999999999999999988875 5556 999999999999999985 99888888877765
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.1e-08 Score=87.87 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=63.9
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
..+....+|+|-|||.++++++|+++|+.||+|++|+..+ ..++.+||+|.|..+|++|++ ++..++.|+.|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3466788999999999999999999999999999976544 458899999999999999995 688888888766
No 87
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.56 E-value=9.9e-07 Score=74.68 Aligned_cols=77 Identities=19% Similarity=0.389 Sum_probs=64.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANC 95 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~v 95 (209)
+...-.+|||||-|++|++||.+.+..-| .+.++++..++.+|++||||+|...+..++++.+++ ...+|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33445789999999999999998887665 678889999999999999999999998888888875 777788775443
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=2.4e-07 Score=84.39 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=71.9
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecC---CCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK---ATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
|...++|||+||++.++|+.|...|..||.|..|+|+..+ +..+.+-|+||.|-+..++++|++ +++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999998764 334556799999999999999996 699999999999
Q ss_pred EEEccc
Q 028402 95 CNLACL 100 (209)
Q Consensus 95 v~~a~~ 100 (209)
+-|.++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988853
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.45 E-value=2.1e-06 Score=60.74 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhh--CCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccC----CeEEEE
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID----GRRANC 95 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~----g~~l~v 95 (209)
++|.|.|||-..|.++|.+++.. .|+...+-++.|..+.-+.|||||.|.+.+.+.+-.+. ++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999854 36778888999988999999999999999999887754 776654 556677
Q ss_pred EEccc
Q 028402 96 NLACL 100 (209)
Q Consensus 96 ~~a~~ 100 (209)
.+|+.
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.43 E-value=6.1e-08 Score=85.95 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=79.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
.++.+.+++|+--|...+++.+|.++|+.+|+|.+|.|+.|+.+++++|.|+|+|.|.+.+..||.+.+..+.|.+|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EccccCCC
Q 028402 97 LACLGVQR 104 (209)
Q Consensus 97 ~a~~~~~~ 104 (209)
.......+
T Consensus 254 ~sEaeknr 261 (549)
T KOG0147|consen 254 LSEAEKNR 261 (549)
T ss_pred ccHHHHHH
Confidence 76544333
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.35 E-value=5.9e-07 Score=75.72 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=71.6
Q ss_pred CccEEE-EcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 21 TYTKVF-VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lf-VgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
...++| |++|++.+++++|+.+|..+|.|..+++..++.++..+||++|+|.+......++..+...+.++.+.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 445566 9999999999999999999999999999999999999999999999999988888666777889988888775
Q ss_pred cc
Q 028402 100 LG 101 (209)
Q Consensus 100 ~~ 101 (209)
++
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 44
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.31 E-value=7.4e-06 Score=70.72 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=66.2
Q ss_pred ccEEEEcCCCCC-CcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 22 YTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 22 ~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
...|-|.||.++ +|.+-|.-+|+.||+|.+|+|+.++ +--|.|.+.|...|+-|++ ++++.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578899999875 9999999999999999999999885 3579999999999999997 59999999999999886
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.3e-06 Score=78.03 Aligned_cols=88 Identities=23% Similarity=0.433 Sum_probs=79.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.-....+|||++||..+++++++++...||.+....++.|..++-++||||.+|.+......|++ +|+..+.+++|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34566899999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred EccccCCCC
Q 028402 97 LACLGVQRS 105 (209)
Q Consensus 97 ~a~~~~~~~ 105 (209)
.+.......
T Consensus 365 ~A~~g~~~~ 373 (500)
T KOG0120|consen 365 RAIVGASNA 373 (500)
T ss_pred hhhccchhc
Confidence 887654433
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.21 E-value=1.7e-06 Score=69.31 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=52.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~ 87 (209)
+...+.+|||.||..++||++|+.+|+.|-....++|... ..-..||++|++.+.|..|+. +++..
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhcce
Confidence 4456789999999999999999999999977666666321 124589999999999999985 45543
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.10 E-value=2.3e-05 Score=53.58 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCCcHHH----HHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 23 TKVFVGGLAWETQKET----MEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~----L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
..|+|.|||.+.+-.. |++++.-|| +|.+| +.+.|+|.|.+.+.|.+|.+ +++..+-|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999888665 667777786 55555 24689999999999999995 79999999999999
Q ss_pred Ecc
Q 028402 97 LAC 99 (209)
Q Consensus 97 ~a~ 99 (209)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 873
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=2.3e-05 Score=56.47 Aligned_cols=69 Identities=30% Similarity=0.431 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh---C---CCccCCeEEEEE
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---A---APVIDGRRANCN 96 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~---~---~~~l~g~~l~v~ 96 (209)
+-|.|.+++..++.++|++.|+.||.|..|.+.+.- .-|+|.|.+.+.|++|++. . ...|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 457888899999999999999999999999987642 3799999999999999952 3 345677766666
Q ss_pred E
Q 028402 97 L 97 (209)
Q Consensus 97 ~ 97 (209)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=3.2e-05 Score=68.60 Aligned_cols=65 Identities=34% Similarity=0.414 Sum_probs=60.4
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHh-hCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhC
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~ 84 (209)
++.++||||+||.-++.++|..+|+ -||.|+-+-|-.|++-+-.+|-+-|+|.+..+-.+||+..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 4678999999999999999999997 8999999999999888899999999999999999999653
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=1.4e-05 Score=64.26 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
....+.++|-+|+..+.+.+|++.|..+|+++...+ ..+++||+|++.+++.+||+ +++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 345678999999999999999999999999866554 25599999999999999997 599999999999954
Q ss_pred c
Q 028402 98 A 98 (209)
Q Consensus 98 a 98 (209)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 4
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.86 E-value=4.9e-05 Score=47.80 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=41.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al 81 (209)
+.|-|.+.+.+..+ ++..+|..||+|.++.+... .-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 46778888877664 45558889999999988622 448999999999999985
No 100
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.74 E-value=4e-05 Score=66.59 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=56.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeec---CCCC--C--------cccEEEEEECCHHHHHHHHHhC
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD---KATG--R--------SKGYGFVTFREPEAAMKACVDA 84 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~tg--~--------~~g~aFV~F~~~~~a~~al~~~ 84 (209)
++.+.++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... +.+. . .+-+|+|+|++.+.|.+|.++.
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458899999999999888999999999999999999765 3222 1 2568999999999999999764
Q ss_pred C
Q 028402 85 A 85 (209)
Q Consensus 85 ~ 85 (209)
+
T Consensus 307 ~ 307 (484)
T KOG1855|consen 307 N 307 (484)
T ss_pred c
Confidence 3
No 101
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.62 E-value=0.00033 Score=49.91 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=51.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEE-EeecC------CCCCcccEEEEEECCHHHHHHHHHhCCCccCCeE-
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAV-VITDK------ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR- 92 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~-i~~~~------~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~- 92 (209)
..+.|.|=+.|++ ..+.|.+.|++||+|.+.. +.++. ..-.....-.|+|++..+|.+||..|+..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456777789988 6677888999999998874 11100 0011244888999999999999999999998864
Q ss_pred EEEEEc
Q 028402 93 ANCNLA 98 (209)
Q Consensus 93 l~v~~a 98 (209)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446665
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.56 E-value=5.7e-05 Score=65.38 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=59.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh---CCCccCCeEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---AAPVIDGRRANCN 96 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~---~~~~l~g~~l~v~ 96 (209)
.+++.|.++|||++++|+||-+++..||+|+.+.+++.+. -||++|.|+++|...+.. --..+.++.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4678899999999999999999999999999998876543 799999999988774422 2334778888777
Q ss_pred Ecc
Q 028402 97 LAC 99 (209)
Q Consensus 97 ~a~ 99 (209)
++.
T Consensus 100 ~sn 102 (492)
T KOG1190|consen 100 YSN 102 (492)
T ss_pred hhh
Confidence 653
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.55 E-value=0.00024 Score=60.30 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=60.4
Q ss_pred CccEEEEcCCCCCCcHHH----H--HHHHhhCCCEEEEEEeecCCCC-CcccE--EEEEECCHHHHHHHHHh-CCCccCC
Q 028402 21 TYTKVFVGGLAWETQKET----M--EKYFEQFGEILEAVVITDKATG-RSKGY--GFVTFREPEAAMKACVD-AAPVIDG 90 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~----L--~~~F~~~G~i~~v~i~~~~~tg-~~~g~--aFV~F~~~~~a~~al~~-~~~~l~g 90 (209)
+..-+||-+|++.+..|+ | .++|.+||+|..|.|.+...+- ...+. .+|+|.+.|+|.+||.. ++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999999877766 3 5899999999998776542111 11222 39999999999999965 9999999
Q ss_pred eEEEEEEcc
Q 028402 91 RRANCNLAC 99 (209)
Q Consensus 91 ~~l~v~~a~ 99 (209)
|.|+..+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999988754
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00031 Score=62.45 Aligned_cols=61 Identities=28% Similarity=0.527 Sum_probs=47.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCC---CCCccc---EEEEEECCHHHHHHHHH
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKG---YGFVTFREPEAAMKACV 82 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---tg~~~g---~aFV~F~~~~~a~~al~ 82 (209)
-+++||||+||++++|++|...|..||.+ .|++....+ ---++| |+|+.|+++.++.+-|.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 46799999999999999999999999975 455553211 123466 99999999988877663
No 105
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.51 E-value=0.00045 Score=55.53 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=59.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~-g~~l~v~~ 97 (209)
.+...+|+.|||.+++.+.|..+|.+|..-++|+++..+ ++.|||+|.+...+..|.. +++..|. ...+.|.+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 456789999999999999999999999999999988753 6799999999888877774 4555544 55666655
Q ss_pred c
Q 028402 98 A 98 (209)
Q Consensus 98 a 98 (209)
+
T Consensus 219 a 219 (221)
T KOG4206|consen 219 A 219 (221)
T ss_pred c
Confidence 4
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.37 E-value=0.00073 Score=62.21 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=63.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
..++.|-+.|+|++++-+||.+||..|-.+-.-.+++--+.|+..|-|-|.|++.++|.+|.+ +++..|..++|.+.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344578899999999999999999999655433333333579999999999999999999996 588889999887764
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.33 E-value=0.0028 Score=49.76 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=54.2
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~ 87 (209)
.......+|.|.+||++.++.||+++..+-|.|+...+.+| |.+.|+|...|+.+-||. ++...
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccc
Confidence 33445568999999999999999999999999999999877 388999999999999995 44333
No 108
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.29 E-value=0.00022 Score=58.30 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=59.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCC--------CCccc----EEEEEECCHHHHHHHHH-hCCCc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT--------GRSKG----YGFVTFREPEAAMKACV-DAAPV 87 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t--------g~~~g----~aFV~F~~~~~a~~al~-~~~~~ 87 (209)
.+-.||+++||+.+.-..|+++|+.||+|-+|-|.....+ +.++. -+.|+|.+...|+++.+ +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988766544 23332 35689999999998886 59999
Q ss_pred cCCeE
Q 028402 88 IDGRR 92 (209)
Q Consensus 88 l~g~~ 92 (209)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.22 E-value=0.0015 Score=49.45 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=45.6
Q ss_pred HHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 38 TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 38 ~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
+|.+.|..||++.-|+++.+ .-.|+|.+-++|.+|+.+++..++|+.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 67788889999988888654 57899999999999999999999999999998754
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.0003 Score=65.89 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=68.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEccc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~ 100 (209)
..+|||.|+|+..|.++|+.+++++|.+++++++..+ .|+.+|.|+|.|.++.++.+++. .+...+.-+.+.|.++.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4689999999999999999999999999999988876 59999999999999999999885 366666666777777655
Q ss_pred cC
Q 028402 101 GV 102 (209)
Q Consensus 101 ~~ 102 (209)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 33
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.14 E-value=0.0039 Score=53.76 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCCCCCCccEEEEcCCCCC-CcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeE
Q 028402 15 GQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~ 92 (209)
.+....+.+.+.|-+|... +.-+.|..+|=.||.|++|++++.+ .|-|.|+..|..++++||. +|+..+-|.+
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 4456677889999999876 6778899999999999999999875 5789999999999999996 6888888888
Q ss_pred EEEEEcc
Q 028402 93 ANCNLAC 99 (209)
Q Consensus 93 l~v~~a~ 99 (209)
|.|..++
T Consensus 355 l~v~~Sk 361 (494)
T KOG1456|consen 355 LNVCVSK 361 (494)
T ss_pred EEEeecc
Confidence 9888774
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.05 E-value=0.002 Score=57.93 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=49.4
Q ss_pred HHHHHHhhCCCEEEEEEeec-C--CCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 38 TMEKYFEQFGEILEAVVITD-K--ATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 38 ~L~~~F~~~G~i~~v~i~~~-~--~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
+++.-+++||.|..|.|.++ . .-.-..|-.||+|.+.+++++|.+ ++|..+.++.+..++-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 35555678999999999887 2 222345778999999999999995 6999999999988875
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.00 E-value=0.0014 Score=56.60 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=62.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCC-EEE--EEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGE-ILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~--v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~v~~ 97 (209)
...|-+.+||.+.+.+||.+||..|-. |.. |.++.+. .|+..|-|||+|.++++|.+|... +++....+.|+|..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 446888999999999999999988863 333 6777774 589999999999999999998865 55555688888876
Q ss_pred cc
Q 028402 98 AC 99 (209)
Q Consensus 98 a~ 99 (209)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 53
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.98 E-value=2.8e-05 Score=72.53 Aligned_cols=70 Identities=26% Similarity=0.358 Sum_probs=59.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCC
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g 90 (209)
+..++||+||+..+.+.+|...|..++.|..+.|.-.+.+++.+|.|+++|.+.+.+.+||+.+...+-|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4467999999999999999999999999888887766678999999999999999999999764444333
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.97 E-value=0.00068 Score=58.47 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=55.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhh-C---CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQ-F---GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~-~---G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
.-.|-..+||+++++.|+.+||.. | |..+.|-+++.+ .|+..|-|||.|..+++|+.||..+...|+-|-|++
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667899999999999999952 2 344556555544 588999999999999999999987666666555443
No 116
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0044 Score=56.01 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=58.6
Q ss_pred CccEEEEcCCCCCCc--H----HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeE
Q 028402 21 TYTKVFVGGLAWETQ--K----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRR 92 (209)
Q Consensus 21 ~~~~lfVgnLp~~~t--e----~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~-g~~ 92 (209)
-...|+|-|+|---. - .-|..+|+++|+|..+.++.+.++| .+||.|++|.+..+|+.|+. +|++.|+ .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 346788999985322 1 2367889999999999999887655 89999999999999999996 5888765 445
Q ss_pred EEEE
Q 028402 93 ANCN 96 (209)
Q Consensus 93 l~v~ 96 (209)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5554
No 117
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.69 E-value=0.013 Score=37.86 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=45.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhC---CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~ 82 (209)
....+|+|.++. +++.++|+.+|..| .....|+++.|. -|-|.|.+.+.|.+||.
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 345689999986 68889999999988 235688998885 57799999999999985
No 118
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.67 E-value=0.0053 Score=52.94 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=65.2
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh---CCCcc
Q 028402 12 AGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---AAPVI 88 (209)
Q Consensus 12 ~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~---~~~~l 88 (209)
...++.....+..|.|.+|-..++|.||-+.++.||.|..|.++..+ --|.|+|+|.+.|+.|+.. +...+
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i 94 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYI 94 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccc
Confidence 34455556677789999999999999999999999999999876543 3799999999999999942 45557
Q ss_pred CCeEEEEEEc
Q 028402 89 DGRRANCNLA 98 (209)
Q Consensus 89 ~g~~l~v~~a 98 (209)
.|...-+.++
T Consensus 95 ~gq~Al~NyS 104 (494)
T KOG1456|consen 95 AGQQALFNYS 104 (494)
T ss_pred cCchhhcccc
Confidence 7777666665
No 119
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.66 E-value=0.0082 Score=51.26 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=60.1
Q ss_pred CCccEEEEcCCC----CCCc-------HHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc
Q 028402 20 TTYTKVFVGGLA----WETQ-------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (209)
Q Consensus 20 ~~~~~lfVgnLp----~~~t-------e~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~ 87 (209)
...++|.|.|+= ...+ +++|++-.++||.|.+|.|.-. .+.|.+-|.|.+.++|..||. +++..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 455788888872 2233 3566677889999999977532 367899999999999999997 59999
Q ss_pred cCCeEEEEEEccc
Q 028402 88 IDGRRANCNLACL 100 (209)
Q Consensus 88 l~g~~l~v~~a~~ 100 (209)
++||.|..++...
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999999887643
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.56 E-value=0.0023 Score=59.10 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=63.0
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE-EEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
--.....|||-.||..+++.++-++|++--.|++ |.|.+-+ +++.++.|||+|..++++.+|+. .+.+.+..+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3345678999999999999999999988777777 6666655 57788999999999888888775 4666677777887
Q ss_pred E
Q 028402 96 N 96 (209)
Q Consensus 96 ~ 96 (209)
.
T Consensus 509 ~ 509 (944)
T KOG4307|consen 509 D 509 (944)
T ss_pred e
Confidence 6
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.18 E-value=0.0015 Score=61.67 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=62.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al-~~~~~~l~g~~l~v~ 96 (209)
+...+++||+|||+..+++.+|+..|..+|.|++|.|-+.+- +.-..++||.|.+.+.+.+|+ ++.+..|....+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 445678999999999999999999999999999999976542 333459999999999988888 456655554455554
Q ss_pred Ec
Q 028402 97 LA 98 (209)
Q Consensus 97 ~a 98 (209)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 44
No 122
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=0.031 Score=47.00 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=49.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEE-EEEEc
Q 028402 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA-NCNLA 98 (209)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l-~v~~a 98 (209)
|-|=++++. .-..|..+|++||+|.+.... .+--+-+|.|.+..+|++||..++.+|++..+ -|+.+
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 444467665 345678899999999887543 22348899999999999999999999988753 34443
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.13 E-value=0.0091 Score=51.80 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCC---CCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~ 97 (209)
....|-|.||.+.+|.++++.+|.-.|+|.++.|..+... ....-.|||.|.|...+..|--+.++.+-++-|.|-.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3448999999999999999999999999999988763211 2234589999999999988887755665555555543
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.13 E-value=0.021 Score=47.90 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHHHhhCCCEEEEEEeecCCCCCcc-cEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 36 KETMEKYFEQFGEILEAVVITDKATGRSK-GYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 36 e~~L~~~F~~~G~i~~v~i~~~~~tg~~~-g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
|+++++..++||.|..|.|..++..-... ---||+|+..++|.+|+. +|+..|.|+.+..-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45788889999999999888776433333 246999999999999996 699999999876444
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.03 E-value=0.0045 Score=54.17 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhC--CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CC-CccCCeEEEEEEc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AA-PVIDGRRANCNLA 98 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~-~~l~g~~l~v~~a 98 (209)
.++|++||.+.++.++|+.+|..- +--... ++ ..||+||...+...+.+|++. ++ .++.|+++.|+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 579999999999999999999543 211111 11 357999999999999999985 44 4589999999887
Q ss_pred cccCCCC
Q 028402 99 CLGVQRS 105 (209)
Q Consensus 99 ~~~~~~~ 105 (209)
-++..+.
T Consensus 74 v~kkqrs 80 (584)
T KOG2193|consen 74 VPKKQRS 80 (584)
T ss_pred hhHHHHh
Confidence 6554443
No 126
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.83 E-value=0.062 Score=40.60 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=55.1
Q ss_pred CCCCccEEEEcCCCCCCc-HHH---HHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEE
Q 028402 18 GDTTYTKVFVGGLAWETQ-KET---MEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~t-e~~---L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l 93 (209)
.+.+..+|.|.=|..++. .+| +...++.||+|.+|.+. | +--|.|.|+|..+|-+|+..-.....|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 466788999987766654 234 44556889999999764 2 347999999999999999763345667778
Q ss_pred EEEEc
Q 028402 94 NCNLA 98 (209)
Q Consensus 94 ~v~~a 98 (209)
.++|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 88775
No 127
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.83 E-value=0.005 Score=50.53 Aligned_cols=61 Identities=26% Similarity=0.269 Sum_probs=47.4
Q ss_pred HHHHHHh-hCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 38 TMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 38 ~L~~~F~-~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
+|...|+ +||+|+++.|-.+. .-.-.|-++|.|..+++|++|++ +|+.-+.|++|..++..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 89999998665442 23457889999999999999996 59999999999988654
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.72 E-value=0.011 Score=48.54 Aligned_cols=60 Identities=28% Similarity=0.429 Sum_probs=53.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~ 83 (209)
..|+|.||..-++.|.|++-|+.||+|+...+..| +.++..+-++|+|...-.+.+|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHH
Confidence 67999999999999999999999999988776666 3578888999999999999999864
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.66 E-value=0.052 Score=37.20 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~ 83 (209)
.-.+|. +|.++...||.++|+.||.| .|.++.|. -|||...+.+.|..++..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 345555 99999999999999999987 56666653 799999999999988753
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.39 E-value=0.024 Score=53.91 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=64.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC--eEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g--~~l~ 94 (209)
.....+.+||++|..++....|...|..||.|..|.+-. ..-||+|.+++...++.|+. +.+..|.+ +.+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 445678999999999999999999999999999988733 34599999999999999996 57777654 5688
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|.++.+.
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 8887643
No 131
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.32 E-value=0.013 Score=52.00 Aligned_cols=72 Identities=19% Similarity=0.162 Sum_probs=56.8
Q ss_pred EEEcCCCCC-CcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccccC
Q 028402 25 VFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGV 102 (209)
Q Consensus 25 lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~~~ 102 (209)
|-+.-.++. -|.++|...|.+||+|..|.+-.. .-.|.|+|.+..+|-+|-...+..|+++.|+|.|..+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 333334444 356899999999999999988544 237899999999987887778899999999999987643
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.26 E-value=0.027 Score=51.39 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=61.4
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHh-hCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc---cC
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV---ID 89 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~---l~ 89 (209)
+|.-...++.|+|.||-.-.|.-+|++++. .+|.|++. +.|+ -|..|||.|.+.++|.+... +++.. -+
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 344456778999999999999999999997 67777776 3343 36799999999999988775 56655 46
Q ss_pred CeEEEEEEcc
Q 028402 90 GRRANCNLAC 99 (209)
Q Consensus 90 g~~l~v~~a~ 99 (209)
.+.|.+.+..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 7778888764
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.47 E-value=0.014 Score=49.60 Aligned_cols=78 Identities=27% Similarity=0.389 Sum_probs=57.3
Q ss_pred ccEEEEcCCCCCCcHHH-H--HHHHhhCCCEEEEEEeecCC--CCC-cccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 22 YTKVFVGGLAWETQKET-M--EKYFEQFGEILEAVVITDKA--TGR-SKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~-L--~~~F~~~G~i~~v~i~~~~~--tg~-~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
...+||-+|+..+.+++ | .+.|.+||.|..|.+..++. +.. ...-++|+|+..++|..||. .++..++++.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 35688889988765554 4 37889999999998887762 111 12347999999999999996 488888888766
Q ss_pred EEEcc
Q 028402 95 CNLAC 99 (209)
Q Consensus 95 v~~a~ 99 (209)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 65543
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.45 E-value=0.073 Score=48.29 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=56.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHh--hCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH---hCCCccCCeEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFE--QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV---DAAPVIDGRRANC 95 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~--~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~---~~~~~l~g~~l~v 95 (209)
+.|-|.+..||.++-+|+++.+|+ .|-++.+|++-.+- -=||+|++..+|+.|.+ ..-++|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 456788899999999999999995 47788888775442 34899999999998874 3556788998876
Q ss_pred EEcc
Q 028402 96 NLAC 99 (209)
Q Consensus 96 ~~a~ 99 (209)
+++.
T Consensus 247 RIKa 250 (684)
T KOG2591|consen 247 RIKA 250 (684)
T ss_pred hhhh
Confidence 6653
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.41 E-value=0.034 Score=51.25 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=57.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~v~~ 97 (209)
.+..++||+|+...+..+-++.+...||-|..+.... |+|++|.......+|+.+ ....+++..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4556899999999999999999999999988875542 999999999999999864 66678787766554
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.02 E-value=0.83 Score=33.05 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccC
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID 89 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~ 89 (209)
...+.+...|..++.++|..+.+.+ ..|+.++|++|. ..++=.+.+.|.+.++|+.-.+. ||..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344444455556666776666655 467889999873 34677899999999999888864 887654
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.98 E-value=0.059 Score=45.58 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=65.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCC-CccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~-~~l~g~~l~v~~a~ 99 (209)
..+++|++++.+.+.+.++..++...|.+..+.+........+++++.+.|...+.+..||++.. ..+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988888777777788899999999999999999998755 45666665555443
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.63 E-value=0.08 Score=41.60 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=45.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhh-CCCE---EEEEEeecCCC--CCcccEEEEEECCHHHHHHHHH-hCCCccCCe-
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQ-FGEI---LEAVVITDKAT--GRSKGYGFVTFREPEAAMKACV-DAAPVIDGR- 91 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~~t--g~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~- 91 (209)
....+|.|++||+++||+++.+.++. ++.. ..+.-.....+ -....-|+|.|.+.+++..-+. .+++.+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999987765 5544 33331122111 1123568999999999777775 477664322
Q ss_pred ----EEEEEEcc
Q 028402 92 ----RANCNLAC 99 (209)
Q Consensus 92 ----~l~v~~a~ 99 (209)
...|++|.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 34566663
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.24 E-value=1.3 Score=29.40 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=36.9
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhhCC-----CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 24 KVFVG-GLAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 24 ~lfVg-nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
++||. +=-..++..+|..++..-+ .|-+|+|..+ |+||+-.. +.++.+++ +++..+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 34543 2234578888888886543 5777888654 89999865 46677775 58999999999998
Q ss_pred Ec
Q 028402 97 LA 98 (209)
Q Consensus 97 ~a 98 (209)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 140
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.42 E-value=7.7 Score=36.57 Aligned_cols=69 Identities=9% Similarity=-0.049 Sum_probs=46.3
Q ss_pred ccEEEEc-CCCCCCcHHHHHHHHhhCC-----CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 22 YTKVFVG-GLAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 22 ~~~lfVg-nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
..++||. +=...++..+|-.++..-+ .|-.|+|..+ |.||+... +.+...+. ++...+.|++|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 3446654 2234577788877776544 3455666543 89999864 44566665 578889999999
Q ss_pred EEEcc
Q 028402 95 CNLAC 99 (209)
Q Consensus 95 v~~a~ 99 (209)
|+.+.
T Consensus 557 ~~~~~ 561 (629)
T PRK11634 557 MQLLG 561 (629)
T ss_pred EEECC
Confidence 99874
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.87 E-value=1.5 Score=34.70 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=42.2
Q ss_pred cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-C--CCccCCeEEEEEEcc
Q 028402 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-A--APVIDGRRANCNLAC 99 (209)
Q Consensus 35 te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~--~~~l~g~~l~v~~a~ 99 (209)
..+.|+++|..++.+.....++. -+-..|.|.+.++|.+|... + +..+.|..++|-++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999998888777643 33578999999999999864 6 788999999998874
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.64 E-value=0.5 Score=45.12 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=59.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc--cCCeEEEEEEccc
Q 028402 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV--IDGRRANCNLACL 100 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~--l~g~~l~v~~a~~ 100 (209)
+..+.|..-..+...|..+|++||+|.+++.+++-. .|.|+|...+.|..|+. +++.+ ..|.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445556667788889999999999999999888744 89999999999999996 57766 4577888888865
Q ss_pred cCC
Q 028402 101 GVQ 103 (209)
Q Consensus 101 ~~~ 103 (209)
-..
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 443
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=86.25 E-value=1.6 Score=39.80 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCc---cCCeE-EEEEEccc
Q 028402 46 FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPV---IDGRR-ANCNLACL 100 (209)
Q Consensus 46 ~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~---l~g~~-l~v~~a~~ 100 (209)
.|.-..+.++.|-.+..+.|||||.|.+.+++.++.+. +++. |..++ +.+.+|+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 34445566777766777889999999999999888864 5554 44443 46666653
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.59 E-value=6.8 Score=25.60 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Q 028402 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRAN 94 (209)
Q Consensus 33 ~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~ 94 (209)
.++-+|++..+.+|.- .+| ..|+ .| =||.|.+..+|++|... ++..+....+.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5778899999999963 333 4453 22 47999999999999975 77766655543
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=85.22 E-value=0.1 Score=45.48 Aligned_cols=66 Identities=15% Similarity=0.038 Sum_probs=53.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCe
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~ 91 (209)
.++|+|.+|+..+...++-+.|..+|+|...++-. +-..-+|-|+|........|+.+++.++.-.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k~q 216 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERKRQ 216 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhhhh
Confidence 47899999999999999999999999988776643 2234567799998888888988877766533
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=83.50 E-value=0.24 Score=40.13 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=54.9
Q ss_pred CCCCccEEEEcC----CCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh
Q 028402 18 GDTTYTKVFVGG----LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 18 ~~~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~ 83 (209)
+++...+++.|+ |...++++.+.+.|+.-+.|+.+++.++.+ ++++-+.|+++....+.-.++..
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 445567888898 889999999999999999999999998875 88999999988877776667643
No 147
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.04 E-value=4.2 Score=35.90 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=49.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCC
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~ 85 (209)
+.+-.+.|=|-++|.....+||...|+.|+ .-.+|+++-|. .+|-.|.+...|..||.+..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 344567888999999999999999999886 44677777664 89999999999999997633
No 148
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=78.14 E-value=4.7 Score=26.57 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=43.2
Q ss_pred HHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 37 ~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
++|++-|.+.| ++..|..++.+++...--.-||+.....+... .++-..|++.++.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecC
Confidence 46788888887 78889888888877777788888875543333 23455688888888754
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.12 E-value=15 Score=32.99 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=53.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~ 89 (209)
.+.|.|=.+|..+|--||-.|...+ -.|.+++|++|. -.++=..+|.|.+.++|..--+ .|+..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 6788999999999999999998654 578999999974 2345578899999999998885 4887654
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.47 E-value=8.8 Score=27.95 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=29.0
Q ss_pred CcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEEC-CHHHHHHHHHh
Q 028402 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVD 83 (209)
Q Consensus 34 ~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~-~~~~a~~al~~ 83 (209)
++.++|++.|+.|..++ ++.+.++ .-+.|++.|+|. +..-...|+++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 35578999999998764 5555554 257899999996 55566677754
No 151
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.59 E-value=8.9 Score=32.49 Aligned_cols=84 Identities=10% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecC-------CCCCcccEEEEEECCHHHHHHHH-----Hh--
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-------ATGRSKGYGFVTFREPEAAMKAC-----VD-- 83 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-------~tg~~~g~aFV~F~~~~~a~~al-----~~-- 83 (209)
++..+++|-+.||..+++--.+-..|.+||.|++|.++.+. +..+......+.|-+.+.|..-- ++
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34567889999999888888888888999999999998765 12233457788998888876532 12
Q ss_pred CCCccCCeEEEEEEcccc
Q 028402 84 AAPVIDGRRANCNLACLG 101 (209)
Q Consensus 84 ~~~~l~g~~l~v~~a~~~ 101 (209)
=...+....|.+.+....
T Consensus 91 fK~~L~S~~L~lsFV~l~ 108 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLN 108 (309)
T ss_pred HHHhcCCcceeEEEEEEe
Confidence 133477778888776543
No 152
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.55 E-value=8.4 Score=32.59 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=35.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCH
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 74 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~ 74 (209)
..-|+|+||+.++.-.||+..+.+-+.+ -+.|.. .-+++-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCc
Confidence 3569999999999999999999877532 233322 12467899999764
No 153
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.32 E-value=12 Score=24.50 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 37 ~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
++|++-|...| +|..|.-+..+.+...--.-||+.+...+...++ +-..|++..++|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecC
Confidence 56777887777 7888888877766777778899887655433332 444578888887755
No 154
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.42 E-value=16 Score=23.60 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.3
Q ss_pred HHHHHHHhhCCCEEEEEE
Q 028402 37 ETMEKYFEQFGEILEAVV 54 (209)
Q Consensus 37 ~~L~~~F~~~G~i~~v~i 54 (209)
.+||++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999977654
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=53.43 E-value=1.4 Score=39.11 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=59.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEe-ecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~-~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.++++-|.|+|+...++.|..++..||.++.|..+ .|.+| ...-|++...+.+..||. ++++.+....++|.+.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 35678899999999999999999999999998653 33332 223367888889999996 5899999988888876
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=53.32 E-value=19 Score=28.38 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=39.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTF 71 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F 71 (209)
.......+++.+++..+++.++...|..++.+..+.+...........+.++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 345667899999999999999999999999997777766543333333444333
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=49.05 E-value=24 Score=24.43 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=23.5
Q ss_pred EEEEECCHHHHHHHHHhC--CCccCCeEEEEEEc
Q 028402 67 GFVTFREPEAAMKACVDA--APVIDGRRANCNLA 98 (209)
Q Consensus 67 aFV~F~~~~~a~~al~~~--~~~l~g~~l~v~~a 98 (209)
|.|+|.+..-|++.+.+. ...+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 689999999999999763 33466666666543
No 158
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.44 E-value=18 Score=30.55 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=27.5
Q ss_pred CccEEEEcCCCCC------------CcHHHHHHHHhhCCCEEEEEEe
Q 028402 21 TYTKVFVGGLAWE------------TQKETMEKYFEQFGEILEAVVI 55 (209)
Q Consensus 21 ~~~~lfVgnLp~~------------~te~~L~~~F~~~G~i~~v~i~ 55 (209)
...+|++.+||-. -+|+-|+..|+.||+|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3457888887742 3577899999999999999875
No 159
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=48.34 E-value=14 Score=21.12 Aligned_cols=16 Identities=13% Similarity=0.435 Sum_probs=10.4
Q ss_pred CCCcHHHHHHHHhhCC
Q 028402 32 WETQKETMEKYFEQFG 47 (209)
Q Consensus 32 ~~~te~~L~~~F~~~G 47 (209)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 160
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=44.42 E-value=13 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHH
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYF 43 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F 43 (209)
.....++|-|.|||...+|++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34566899999999999999999765
No 161
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=42.42 E-value=11 Score=33.29 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=49.2
Q ss_pred CccEEEEcCCCCCCcHH--------HHHHHHhh--CCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 028402 21 TYTKVFVGGLAWETQKE--------TMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~--------~L~~~F~~--~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al 81 (209)
-.+.+|+.++..+.+.+ ++...|.. .+.+..+...++.....++|..|++|...+.+++.+
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34567777777765555 89999987 677888888777666778899999999999999988
No 162
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.92 E-value=1.3e+02 Score=25.99 Aligned_cols=10 Identities=50% Similarity=1.262 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q 028402 160 GYSPYSADYT 169 (209)
Q Consensus 160 gy~~~~~~yg 169 (209)
||++|+++|+
T Consensus 77 Gyg~YGgGyg 86 (362)
T KOG3875|consen 77 GYGPYGGGYG 86 (362)
T ss_pred CCCCcCCCcC
Confidence 3344444444
No 163
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.19 E-value=51 Score=30.71 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=57.2
Q ss_pred CCCccEEEEcCCCCC-CcHHHHHHHHhhC----CCEEEEEEeecC----------CCCC-------------c-------
Q 028402 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVITDK----------ATGR-------------S------- 63 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~----------~tg~-------------~------- 63 (209)
...+++|-|-|+.|+ +...+|..+|..| |.|.+|.|-... .+|. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 457789999999997 8889999999876 689998864311 1111 0
Q ss_pred --------c---------cEEEEEECCHHHHHHHHH-hCCCccC--CeEEEEEEc
Q 028402 64 --------K---------GYGFVTFREPEAAMKACV-DAAPVID--GRRANCNLA 98 (209)
Q Consensus 64 --------~---------g~aFV~F~~~~~a~~al~-~~~~~l~--g~~l~v~~a 98 (209)
| =||.|+|.+.+.|.+.-+ .+|.++. +..|.+++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 178999999999988776 4787765 444555554
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.76 E-value=28 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA 52 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v 52 (209)
......+|+-|+|..+|++.|.++.+.+|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456789999999999999999999999855444
No 165
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=36.34 E-value=76 Score=21.69 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.1
Q ss_pred CEEEEEEeecCCCCCcccEEEEEECC
Q 028402 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 48 ~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
+|++|+|..-...++-+++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766668899999999986
No 166
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.21 E-value=2.1e+02 Score=21.98 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhC---CCEEEEEEeecCCC---------CCccc-EEEEEECCHHH
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKAT---------GRSKG-YGFVTFREPEA 76 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~t---------g~~~g-~aFV~F~~~~~ 76 (209)
.+|++.-++..++|++.++..++- +++.+|.+-+.+++ ...+. |-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 689999999999999999999764 57777776554321 12233 77888887544
No 167
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.58 E-value=73 Score=29.14 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=44.3
Q ss_pred EEEcCCCCCCcH---HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEE
Q 028402 25 VFVGGLAWETQK---ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (209)
Q Consensus 25 lfVgnLp~~~te---~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l 93 (209)
=+||||+.-... ..+.++=++||.|-.+++-.. -.|.-.+.+.|+.|+..++..+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 357888765443 455555579999998877322 357778999999999988888888864
No 168
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.41 E-value=52 Score=26.06 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=47.7
Q ss_pred CccEEEEcCCCCCCcHH-----HHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe-EE
Q 028402 21 TYTKVFVGGLAWETQKE-----TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR-RA 93 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~-----~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~-~l 93 (209)
-..++++.+++.++-.+ ..+.+|.++-+.....+++ +.++.-|.|.+.+.|.+|.. .+...|.++ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34567788887764322 2345566555544444443 24466689999999999985 588889888 67
Q ss_pred EEEEcc
Q 028402 94 NCNLAC 99 (209)
Q Consensus 94 ~v~~a~ 99 (209)
..-++.
T Consensus 83 k~yfaQ 88 (193)
T KOG4019|consen 83 KLYFAQ 88 (193)
T ss_pred EEEEcc
Confidence 766664
No 169
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.56 E-value=54 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=21.1
Q ss_pred EEEEECCHHHHHHHHHh-CCCccCCeEEEEEEc
Q 028402 67 GFVTFREPEAAMKACVD-AAPVIDGRRANCNLA 98 (209)
Q Consensus 67 aFV~F~~~~~a~~al~~-~~~~l~g~~l~v~~a 98 (209)
|||+|++..+|+.|++. .... .+.++++.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 79999999999999874 2222 244466665
No 170
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.31 E-value=1.2e+02 Score=20.90 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=32.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEEC
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~ 72 (209)
..-||||+++..+.|.-.+.+.+..++-.-+-+..+. . ..||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEeC
Confidence 4569999999998888777777655543333333332 2 5789988773
No 171
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.63 E-value=7.2 Score=34.90 Aligned_cols=76 Identities=7% Similarity=-0.152 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeEEEEEEcc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al-~~~~~~l~g~~l~v~~a~ 99 (209)
.+.|+..|+...+++++.-+|..+|-|..+.+.+--..+-.+..+||+-.+ +.+..+| .+....+.+..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456778899999999999999999999998876655555667788888765 4556677 345556666677777664
No 172
>PRK11901 hypothetical protein; Reviewed
Probab=32.14 E-value=1.1e+02 Score=26.48 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEE--EECCHHHHHHHHHh
Q 028402 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV--TFREPEAAMKACVD 83 (209)
Q Consensus 33 ~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV--~F~~~~~a~~al~~ 83 (209)
..+++.|+.|..+.+ +..+.+......|+ ..|..| .|.+.++|++|++.
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~s 303 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIAT 303 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHh
Confidence 456888988888775 45566655443343 345544 79999999999964
No 173
>PF15063 TC1: Thyroid cancer protein 1
Probab=31.67 E-value=29 Score=23.27 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCC
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE 48 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~ 48 (209)
-+...++--+.||=.+++.+.|..+|.+-|.
T Consensus 21 ~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD 51 (79)
T PF15063_consen 21 FDTASRKKASANIFENVNLDQLQRLFQKSGD 51 (79)
T ss_pred cchHHhhhhhhhhhhccCHHHHHHHHHHccc
Confidence 3345566677888899999999999999985
No 174
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.25 E-value=1.5e+02 Score=23.52 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=33.4
Q ss_pred CcHHHHHHHHh-hCCCEEEEEEeecCCC-CCcccEEEEEECCHHHHHHHHHh
Q 028402 34 TQKETMEKYFE-QFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 34 ~te~~L~~~F~-~~G~i~~v~i~~~~~t-g~~~g~aFV~F~~~~~a~~al~~ 83 (209)
.|+++|.++.. .-|++..|.+-+.... -..+|-.||+|.+.+.+.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 45555555442 2278888876554321 14578899999999999988854
No 175
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=86 Score=28.10 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCCCCCCccEEEEcCCCCC-CcHHHHHHHHhhC----CCEEEEEEe
Q 028402 15 GQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVI 55 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~~v~i~ 55 (209)
.|.+...+++|-|-||.|+ +...+|..+|+.| |.|..|.|.
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 3444567789999999997 8888999999876 678877763
No 176
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=28.56 E-value=1.1e+02 Score=21.44 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=20.2
Q ss_pred CEEEEEEeecCCCCCcccEEEEEECC
Q 028402 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 48 ~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
+|++|+|..-...++-+++|=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888876554457889999999986
No 177
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.27 E-value=1.2e+02 Score=21.30 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=30.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECC
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
..-||||+++..+.|.--..+-+.++.-.-+-+..+ +.. .||.|.++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~e-qG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NTE-SGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CCC-CCcEEEecCC
Confidence 346999999988887766666655544222323333 222 4899987754
No 178
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=27.82 E-value=1e+02 Score=21.52 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCcHHHHH---HHHhhCCCEEEEEEee----cCCCCCcccEEEEEE
Q 028402 24 KVFVGGLAWETQKETME---KYFEQFGEILEAVVIT----DKATGRSKGYGFVTF 71 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~---~~F~~~G~i~~v~i~~----~~~tg~~~g~aFV~F 71 (209)
..|+.+||.++.+.++. +.|..+.. ++.|.. ......+.|++.+-+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~--~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGP--DVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCS--EEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCC--CeEEEEecccCccCCCCCceEEEEE
Confidence 35889999999987765 44545543 444433 344566777775543
No 179
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.60 E-value=1.9e+02 Score=19.32 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=36.2
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 028402 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKA 80 (209)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~a 80 (209)
-|+=.++...+..+|++.++. |+ +|.+|..+.-+. ..-=|||++..-+.|...
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 444457889999999999976 55 566776555432 122589999877666654
No 180
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.61 E-value=11 Score=34.68 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=45.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l 88 (209)
..++|||.|++++++-++|..+++.+--..++.+..+-.-.+..-+..|+|+-.-....|+. +|+..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 46789999999999999999999988766666554432223344577788875444444442 344433
No 181
>PHA01632 hypothetical protein
Probab=26.48 E-value=72 Score=20.08 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=15.7
Q ss_pred EcCCCCCCcHHHHHHHHhh
Q 028402 27 VGGLAWETQKETMEKYFEQ 45 (209)
Q Consensus 27 VgnLp~~~te~~L~~~F~~ 45 (209)
|-.+|..-||++|+..+.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4588999999999988754
No 182
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=26.06 E-value=78 Score=20.51 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=23.6
Q ss_pred cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEE
Q 028402 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV 69 (209)
Q Consensus 35 te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV 69 (209)
-|.+|...|-+--+|+++.|...|.- .+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 35678888888889999999876533 3445554
No 183
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.76 E-value=2.3e+02 Score=19.29 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=36.7
Q ss_pred EEcCCCCCCcHHHHHHHHhh-CC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 028402 26 FVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (209)
Q Consensus 26 fVgnLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al 81 (209)
|+=-++...+..++++.+++ |+ .|.+|..+.-+. ..-=|+|++...++|....
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 33346889999999999976 55 677776655442 1225899998877776653
No 184
>KOG3668 consensus Phosphatidylinositol transfer protein [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=24.19 E-value=54 Score=27.23 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.6
Q ss_pred CCccceeEEEEEEee
Q 028402 193 SNMLFYKYLKIKIKI 207 (209)
Q Consensus 193 ~~~~~~~~~~~~~~~ 207 (209)
+.||-||+++|+||-
T Consensus 187 P~McaYKlvtvefk~ 201 (269)
T KOG3668|consen 187 PVMCAYKLVTVEFKW 201 (269)
T ss_pred CeEEEeeEEEEEEEe
Confidence 679999999999984
No 185
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.85 E-value=79 Score=26.44 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEee
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVIT 56 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~ 56 (209)
.....|+|||.++|..-|..+++..-.+....++.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 34567999999999999999997655554554443
No 186
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=2.9e+02 Score=19.79 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 028402 38 TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (209)
Q Consensus 38 ~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~ 82 (209)
+|.++++++| |.+-.|..|.. .+.-|+++++.|.+...++|.
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHh
Confidence 5677888887 67777777742 346699999997777666663
No 187
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=22.81 E-value=1.1e+02 Score=21.88 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=17.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHh
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFE 44 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~ 44 (209)
++.+.+.++++.|| |++|+++|+.
T Consensus 60 ~ekeg~~i~~g~lP---t~~eVe~Fl~ 83 (105)
T PF09702_consen 60 KEKEGNYIIVGYLP---TDEEVEDFLD 83 (105)
T ss_pred ccCCCCEEecCCCC---ChHHHHHHHH
Confidence 35566889999999 5677777664
No 188
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=22.75 E-value=1.3e+02 Score=20.89 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=21.1
Q ss_pred CEEEEEEeecCCCCCcccEEEEEECC
Q 028402 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 48 ~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
+|++|+|.+-...|+-+.++-|+|.+
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ 27 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDN 27 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecc
Confidence 57888887766668889999999975
No 189
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.71 E-value=2.7e+02 Score=19.29 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=33.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHh-------hC-CCEEEEEEeec-----CCCCCccc-EEEEEECCHHHHHHHHH
Q 028402 24 KVFVGGLAWETQKETMEKYFE-------QF-GEILEAVVITD-----KATGRSKG-YGFVTFREPEAAMKACV 82 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~-------~~-G~i~~v~i~~~-----~~tg~~~g-~aFV~F~~~~~a~~al~ 82 (209)
.+|| |.++++++++..+.+ +. |+|.++.-.-. +-....+| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4565 567777777665543 33 46666642211 12234455 57888987777777774
No 190
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=22.49 E-value=3.2e+02 Score=20.09 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHhh-CCCEEEE----EEeecCCCCCcccEEEEEECCHHHHHH
Q 028402 33 ETQKETMEKYFEQ-FGEILEA----VVITDKATGRSKGYGFVTFREPEAAMK 79 (209)
Q Consensus 33 ~~te~~L~~~F~~-~G~i~~v----~i~~~~~tg~~~g~aFV~F~~~~~a~~ 79 (209)
+++.+||++-+++ |-.-.++ .+-..-..|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788888888765 3222222 23333456788899976 556555543
No 191
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=21.75 E-value=2e+02 Score=21.92 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=41.4
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al 81 (209)
+.-.-+||.|.-+..--+.--+++|+.|- ++.+|.+.++...++-+...-+...+..+.++..
T Consensus 84 ~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~~ 147 (153)
T PF14401_consen 84 ERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQDF 147 (153)
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHHH
Confidence 34445789987765555666789999885 6888888776543455556666665555555443
No 192
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=21.44 E-value=96 Score=21.40 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=27.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhh-CCCEEEEEEeecCCCCCcccEEEEEECC
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
..-||||+++..+.|.--..+-+. .++-.-+-+..+ ..-.||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~---~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS---NTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC---CCCCCcEEEecCC
Confidence 346999999988877655444444 222111222222 2245788877654
No 193
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.98 E-value=96 Score=17.44 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=14.2
Q ss_pred CCcHHHHHHHHhhCCCE
Q 028402 33 ETQKETMEKYFEQFGEI 49 (209)
Q Consensus 33 ~~te~~L~~~F~~~G~i 49 (209)
+.++++|++.+..+|-+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 56889999999998843
Done!