Query 028402
Match_columns 209
No_of_seqs 235 out of 1911
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 18:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-22 4.1E-27 144.3 11.6 80 21-100 18-98 (99)
2 2dgs_A DAZ-associated protein 99.9 6.7E-22 2.3E-26 139.7 13.4 87 16-102 4-90 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.9 4E-22 1.4E-26 152.3 13.0 82 20-101 37-119 (156)
4 2cqd_A RNA-binding region cont 99.9 1.8E-21 6.2E-26 141.5 14.2 86 15-101 10-96 (116)
5 3s8s_A Histone-lysine N-methyl 99.9 1E-21 3.6E-26 142.0 12.0 83 19-101 3-86 (110)
6 1u6f_A Tcubp1, RNA-binding pro 99.9 1.7E-21 5.9E-26 145.8 13.5 85 17-101 37-122 (139)
7 1whw_A Hypothetical protein ri 99.9 2.6E-21 8.8E-26 136.6 12.8 85 18-102 4-89 (99)
8 2cpz_A CUG triplet repeat RNA- 99.9 1.3E-21 4.5E-26 142.0 11.5 89 15-103 18-107 (115)
9 3q2s_C Cleavage and polyadenyl 99.9 2.2E-22 7.4E-27 163.5 7.8 81 21-101 67-150 (229)
10 2lxi_A RNA-binding protein 10; 99.9 2.2E-22 7.4E-27 140.7 6.6 82 22-103 1-85 (91)
11 3s7r_A Heterogeneous nuclear r 99.9 1.9E-21 6.3E-26 134.2 11.1 82 17-98 6-87 (87)
12 2dgo_A Cytotoxic granule-assoc 99.9 9E-21 3.1E-25 137.5 15.1 90 15-104 8-98 (115)
13 2dng_A Eukaryotic translation 99.9 5.2E-21 1.8E-25 136.2 12.9 85 16-101 9-93 (103)
14 2dnm_A SRP46 splicing factor; 99.9 2.7E-21 9.1E-26 137.6 11.1 86 16-101 7-93 (103)
15 2cqg_A TDP-43, TAR DNA-binding 99.9 5.5E-21 1.9E-25 136.0 12.6 87 15-102 8-94 (103)
16 2dnz_A Probable RNA-binding pr 99.9 8.5E-21 2.9E-25 132.9 13.0 82 20-101 3-85 (95)
17 2rs2_A Musashi-1, RNA-binding 99.9 2.9E-21 9.9E-26 139.3 10.8 87 17-103 20-106 (109)
18 1wi8_A EIF-4B, eukaryotic tran 99.9 5.4E-21 1.8E-25 136.3 12.1 85 16-101 9-94 (104)
19 1x4h_A RNA-binding protein 28; 99.9 6.4E-21 2.2E-25 137.2 12.6 89 16-104 9-104 (111)
20 2dh8_A DAZ-associated protein 99.9 2E-21 7E-26 138.7 9.8 88 15-102 9-96 (105)
21 1x5u_A Splicing factor 3B subu 99.9 7.8E-21 2.7E-25 135.5 12.8 86 16-101 9-95 (105)
22 2fy1_A RNA-binding motif prote 99.9 9.6E-21 3.3E-25 138.0 13.3 83 18-101 3-86 (116)
23 2khc_A Testis-specific RNP-typ 99.9 2E-21 6.8E-26 141.6 9.5 85 15-99 33-118 (118)
24 2lkz_A RNA-binding protein 5; 99.9 8.7E-22 3E-26 138.9 7.3 84 16-99 3-93 (95)
25 2cq0_A Eukaryotic translation 99.9 6.7E-21 2.3E-25 135.5 12.0 85 17-101 10-95 (103)
26 1x5s_A Cold-inducible RNA-bind 99.9 6.7E-21 2.3E-25 135.2 11.7 85 18-102 8-93 (102)
27 2dgp_A Bruno-like 4, RNA bindi 99.9 5.5E-21 1.9E-25 136.6 11.2 87 15-101 6-96 (106)
28 1x5t_A Splicing factor 3B subu 99.8 5.4E-21 1.9E-25 134.1 10.7 82 20-101 3-86 (96)
29 2dhg_A TRNA selenocysteine ass 99.8 8.9E-21 3E-25 135.0 11.9 88 17-105 4-94 (104)
30 2cph_A RNA binding motif prote 99.8 1.2E-20 4.1E-25 134.9 12.5 87 16-102 9-98 (107)
31 3ex7_B RNA-binding protein 8A; 99.8 6.2E-21 2.1E-25 140.5 11.2 88 16-103 16-104 (126)
32 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.4E-21 1.9E-25 135.7 10.3 85 18-102 8-93 (102)
33 2cq4_A RNA binding motif prote 99.8 7.8E-22 2.7E-26 143.0 5.8 87 18-104 21-107 (114)
34 3md1_A Nuclear and cytoplasmic 99.8 1.5E-20 5.3E-25 128.2 11.6 80 22-101 1-81 (83)
35 1x4b_A Heterogeneous nuclear r 99.8 2.8E-21 9.5E-26 140.5 8.3 84 19-102 24-107 (116)
36 2cpf_A RNA binding motif prote 99.8 1.2E-20 4.1E-25 132.9 11.2 84 19-102 2-89 (98)
37 1p27_B RNA-binding protein 8A; 99.8 1.6E-20 5.3E-25 134.2 11.9 86 16-101 17-103 (106)
38 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-20 4.8E-25 129.6 11.1 82 20-101 4-86 (87)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-20 1E-24 132.5 12.8 85 18-103 11-99 (105)
40 2jrs_A RNA-binding protein 39; 99.8 1.3E-20 4.4E-25 135.7 10.9 89 13-101 17-106 (108)
41 2do4_A Squamous cell carcinoma 99.8 2.2E-20 7.5E-25 132.1 11.9 84 17-101 12-96 (100)
42 2cpe_A RNA-binding protein EWS 99.8 1.5E-20 5.2E-25 135.8 11.3 86 16-101 9-103 (113)
43 2cqi_A Nucleolysin TIAR; RNA r 99.8 4E-20 1.4E-24 131.5 13.2 86 16-103 9-95 (103)
44 2d9p_A Polyadenylate-binding p 99.8 3E-20 1E-24 132.1 12.5 85 16-102 9-94 (103)
45 2e5h_A Zinc finger CCHC-type a 99.8 1.6E-20 5.6E-25 131.2 10.9 84 16-99 10-94 (94)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-20 5.4E-25 128.7 10.5 81 19-99 4-85 (85)
47 2cqc_A Arginine/serine-rich sp 99.8 2.1E-20 7.1E-25 130.8 11.3 84 16-99 9-93 (95)
48 2do0_A HnRNP M, heterogeneous 99.8 9.8E-20 3.3E-24 131.7 15.1 84 17-101 10-94 (114)
49 2m2b_A RNA-binding protein 10; 99.8 3.1E-21 1.1E-25 143.4 7.2 88 13-101 14-108 (131)
50 1s79_A Lupus LA protein; RRM, 99.8 1.1E-20 3.8E-25 135.1 9.5 82 18-100 7-88 (103)
51 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.3E-21 1.5E-25 136.1 7.3 84 17-101 14-98 (100)
52 1oo0_B CG8781-PA, drosophila Y 99.8 2.5E-20 8.4E-25 134.1 11.3 88 15-102 19-107 (110)
53 2ywk_A Putative RNA-binding pr 99.8 2.2E-20 7.5E-25 130.7 10.6 84 15-99 9-93 (95)
54 3n9u_C Cleavage and polyadenyl 99.8 1.7E-20 5.7E-25 143.8 10.8 80 21-100 54-136 (156)
55 3ucg_A Polyadenylate-binding p 99.8 2.6E-20 9E-25 128.7 10.7 80 21-100 5-84 (89)
56 2cq3_A RNA-binding protein 9; 99.8 8.9E-20 3.1E-24 129.7 13.6 87 15-103 8-95 (103)
57 4f25_A Polyadenylate-binding p 99.8 2.4E-20 8.1E-25 135.7 10.8 80 21-102 4-84 (115)
58 2la6_A RNA-binding protein FUS 99.8 3.3E-20 1.1E-24 131.0 11.2 82 17-98 8-98 (99)
59 3p5t_L Cleavage and polyadenyl 99.8 3.3E-21 1.1E-25 134.1 5.9 80 23-102 2-84 (90)
60 2x1f_A MRNA 3'-END-processing 99.8 3.3E-20 1.1E-24 130.3 11.1 82 21-102 1-83 (96)
61 1wez_A HnRNP H', FTP-3, hetero 99.8 2.1E-20 7E-25 133.4 10.0 81 17-99 10-90 (102)
62 2mss_A Protein (musashi1); RNA 99.8 6.5E-21 2.2E-25 127.8 6.9 75 24-98 1-75 (75)
63 2div_A TRNA selenocysteine ass 99.8 3.5E-20 1.2E-24 130.8 11.0 83 18-100 5-93 (99)
64 3ns6_A Eukaryotic translation 99.8 7.2E-21 2.5E-25 135.1 7.4 83 19-101 3-93 (100)
65 2kxn_B Transformer-2 protein h 99.8 2.3E-20 7.8E-25 138.6 10.0 86 16-101 40-126 (129)
66 2cpy_A RNA-binding protein 12; 99.8 5E-21 1.7E-25 139.0 6.0 84 18-102 11-95 (114)
67 2jwn_A Embryonic polyadenylate 99.8 4.7E-20 1.6E-24 135.4 11.2 80 21-100 35-114 (124)
68 1wg5_A Heterogeneous nuclear r 99.8 7.7E-20 2.6E-24 130.6 11.7 82 18-100 11-93 (104)
69 4a8x_A RNA-binding protein wit 99.8 4.5E-20 1.6E-24 127.1 9.8 82 20-101 2-85 (88)
70 2dgw_A Probable RNA-binding pr 99.8 9.5E-20 3.3E-24 126.7 11.5 83 17-101 5-87 (91)
71 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-19 4.9E-24 125.8 11.6 83 17-101 3-86 (92)
72 3pgw_S U1-70K; protein-RNA com 99.8 1.9E-19 6.5E-24 158.7 15.2 84 20-103 100-184 (437)
73 1x4a_A Splicing factor, argini 99.8 1.9E-19 6.6E-24 129.3 12.5 84 15-101 15-99 (109)
74 1p1t_A Cleavage stimulation fa 99.8 1.9E-20 6.5E-25 133.2 7.0 87 17-103 3-90 (104)
75 2dis_A Unnamed protein product 99.8 1.8E-19 6.2E-24 129.3 12.2 85 20-104 6-95 (109)
76 3ulh_A THO complex subunit 4; 99.8 1.6E-19 5.4E-24 129.2 11.7 83 16-99 23-106 (107)
77 2dgu_A Heterogeneous nuclear r 99.8 3.6E-19 1.2E-23 126.7 13.3 83 16-106 5-88 (103)
78 2cqp_A RNA-binding protein 12; 99.8 5E-20 1.7E-24 129.7 8.7 82 18-99 11-93 (98)
79 1iqt_A AUF1, heterogeneous nuc 99.8 1.5E-20 5E-25 126.0 5.6 75 24-98 1-75 (75)
80 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-19 6.5E-24 126.6 11.2 79 20-101 7-90 (96)
81 2err_A Ataxin-2-binding protei 99.8 9E-20 3.1E-24 131.3 9.4 86 14-101 21-107 (109)
82 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-19 4.2E-24 129.9 9.9 79 18-102 12-93 (105)
83 2lea_A Serine/arginine-rich sp 99.8 5.2E-20 1.8E-24 137.7 8.2 86 16-101 41-127 (135)
84 2db1_A Heterogeneous nuclear r 99.8 4.3E-20 1.5E-24 135.0 7.5 83 18-101 13-98 (118)
85 2kn4_A Immunoglobulin G-bindin 99.8 2.2E-19 7.4E-24 137.1 11.7 84 18-101 66-150 (158)
86 2ek1_A RNA-binding protein 12; 99.8 4.4E-20 1.5E-24 129.2 7.2 81 19-99 12-93 (95)
87 1x4c_A Splicing factor, argini 99.8 5.6E-19 1.9E-23 126.8 13.2 77 18-101 11-93 (108)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.4E-19 4.8E-24 135.1 10.4 82 17-98 58-140 (140)
89 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4E-20 1.4E-24 124.4 6.3 76 23-98 1-76 (77)
90 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.7E-19 9.4E-24 137.9 11.9 88 16-103 66-154 (165)
91 2hgn_A Heterogeneous nuclear r 99.8 1.7E-20 5.8E-25 141.1 4.6 81 18-100 42-122 (139)
92 2dnn_A RNA-binding protein 12; 99.8 7.6E-20 2.6E-24 132.0 7.7 79 20-100 14-92 (109)
93 2xs2_A Deleted in azoospermia- 99.8 6.9E-20 2.4E-24 130.0 7.3 85 17-103 4-88 (102)
94 2kt5_A RNA and export factor-b 99.8 4.7E-19 1.6E-23 130.1 12.0 83 18-101 31-114 (124)
95 2fc9_A NCL protein; structure 99.8 3.4E-19 1.2E-23 126.2 10.7 81 17-101 10-91 (101)
96 2hgl_A HNRPF protein, heteroge 99.8 8.7E-20 3E-24 136.7 7.7 82 18-100 40-124 (136)
97 2cq1_A PTB-like protein L; RRM 99.8 8.2E-19 2.8E-23 124.9 12.1 81 16-102 9-92 (101)
98 1x4e_A RNA binding motif, sing 99.8 4.3E-20 1.5E-24 126.8 5.0 79 20-98 3-82 (85)
99 2fc8_A NCL protein; structure 99.8 5E-19 1.7E-23 125.4 10.7 82 17-101 10-92 (102)
100 1wex_A Hypothetical protein (r 99.8 1.5E-18 5.3E-23 124.1 13.2 80 16-101 9-91 (104)
101 2cpi_A CCR4-NOT transcription 99.8 3.7E-19 1.3E-23 128.4 9.9 84 18-101 11-101 (111)
102 2dnq_A RNA-binding protein 4B; 99.8 1.3E-18 4.4E-23 120.7 12.2 76 18-101 4-80 (90)
103 1x5o_A RNA binding motif, sing 99.8 7E-19 2.4E-23 127.2 11.2 83 17-100 20-111 (114)
104 2hgm_A HNRPF protein, heteroge 99.8 1.4E-19 4.9E-24 133.8 7.5 81 18-100 38-120 (126)
105 1fj7_A Nucleolin RBD1, protein 99.8 3.3E-20 1.1E-24 131.4 3.8 82 19-101 14-95 (101)
106 1wel_A RNA-binding protein 12; 99.8 6.9E-20 2.4E-24 134.8 5.6 83 19-101 22-104 (124)
107 2jvo_A Nucleolar protein 3; nu 99.8 4.4E-19 1.5E-23 127.7 9.7 82 13-102 22-104 (108)
108 1x4d_A Matrin 3; structural ge 99.8 4.9E-19 1.7E-23 126.3 9.7 78 18-101 11-92 (102)
109 2lmi_A GRSF-1, G-rich sequence 99.8 8.8E-20 3E-24 130.9 5.6 83 18-101 7-92 (107)
110 2e5g_A U6 snRNA-specific termi 99.8 1.2E-18 4.2E-23 121.9 11.4 77 20-101 6-82 (94)
111 2ki2_A SS-DNA binding protein 99.8 6.2E-20 2.1E-24 127.3 4.6 79 23-102 2-81 (90)
112 2lcw_A RNA-binding protein FUS 99.7 9.9E-21 3.4E-25 137.6 0.0 84 18-101 3-95 (116)
113 2cpx_A Hypothetical protein FL 99.8 2E-19 6.8E-24 130.2 6.9 85 18-102 21-106 (115)
114 1l3k_A Heterogeneous nuclear r 99.8 1.2E-18 4.2E-23 136.3 11.4 85 20-104 102-186 (196)
115 2ad9_A Polypyrimidine tract-bi 99.8 1.5E-18 5.1E-23 127.0 11.0 81 17-103 26-109 (119)
116 1x4g_A Nucleolysin TIAR; struc 99.8 2.1E-18 7.3E-23 123.8 11.7 80 18-103 21-101 (109)
117 2ytc_A PRE-mRNA-splicing facto 99.8 1.9E-18 6.5E-23 118.3 10.8 79 15-99 5-85 (85)
118 2dgt_A RNA-binding protein 30; 99.8 3E-18 1E-22 119.3 11.9 78 16-101 4-82 (92)
119 2nlw_A Eukaryotic translation 99.8 1E-18 3.6E-23 124.9 9.5 82 17-100 10-99 (105)
120 2dha_A FLJ20171 protein; RRM d 99.8 2.8E-19 9.6E-24 131.7 6.6 80 20-100 21-104 (123)
121 1l3k_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 135.5 11.4 86 16-101 7-92 (196)
122 3r27_A HnRNP L, heterogeneous 99.8 1.7E-18 6E-23 122.7 10.3 78 18-101 17-97 (100)
123 2la4_A Nuclear and cytoplasmic 99.8 6E-19 2E-23 124.9 7.8 77 18-100 23-100 (101)
124 1why_A Hypothetical protein ri 99.8 3.3E-18 1.1E-22 120.3 11.2 78 18-101 13-93 (97)
125 4f02_A Polyadenylate-binding p 99.8 2.2E-18 7.4E-23 137.8 11.7 81 20-100 13-94 (213)
126 2hvz_A Splicing factor, argini 99.8 2.2E-18 7.6E-23 121.9 10.3 75 23-102 1-76 (101)
127 2dnp_A RNA-binding protein 14; 99.8 4.4E-18 1.5E-22 118.0 11.6 77 17-101 4-81 (90)
128 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-18 4.4E-23 120.0 8.6 73 21-99 6-79 (89)
129 2a3j_A U1 small nuclear ribonu 99.8 2.5E-18 8.5E-23 127.3 10.8 84 16-102 23-111 (127)
130 2cqh_A IGF-II mRNA-binding pro 99.8 2E-18 6.7E-23 120.4 8.9 77 18-101 4-83 (93)
131 2cpj_A Non-POU domain-containi 99.8 4.2E-18 1.4E-22 120.1 10.7 78 18-101 11-89 (99)
132 2xnq_A Nuclear polyadenylated 99.8 5.2E-18 1.8E-22 119.6 11.1 76 17-100 17-94 (97)
133 2cpd_A Apobec-1 stimulating pr 99.8 8.8E-18 3E-22 118.5 12.2 76 18-101 11-89 (99)
134 1x4f_A Matrin 3; structural ge 99.8 2.2E-18 7.4E-23 124.8 9.2 78 18-101 21-102 (112)
135 1wf1_A RNA-binding protein RAL 99.8 4.4E-18 1.5E-22 122.4 10.6 73 20-100 25-99 (110)
136 2krb_A Eukaryotic translation 99.8 1E-18 3.6E-23 118.9 6.8 72 22-95 1-80 (81)
137 3beg_B Splicing factor, argini 99.8 9E-19 3.1E-23 127.3 6.7 74 19-99 13-92 (115)
138 2kvi_A Nuclear polyadenylated 99.8 2.5E-18 8.5E-23 120.8 8.6 76 18-101 6-83 (96)
139 2e5j_A Methenyltetrahydrofolat 99.8 3.8E-18 1.3E-22 120.0 9.4 79 18-101 15-94 (97)
140 2jvr_A Nucleolar protein 3; RN 99.8 2.3E-18 8E-23 124.6 8.2 76 20-99 26-103 (111)
141 1nu4_A U1A RNA binding domain; 99.8 2.3E-18 7.7E-23 120.9 7.9 81 18-101 4-89 (97)
142 2f3j_A RNA and export factor b 99.7 5.3E-18 1.8E-22 132.4 10.3 82 19-101 85-167 (177)
143 3lqv_A PRE-mRNA branch site pr 99.7 7.8E-18 2.7E-22 121.9 10.2 80 20-102 6-86 (115)
144 1fjc_A Nucleolin RBD2, protein 99.7 2.9E-18 9.8E-23 120.2 7.4 79 18-101 12-91 (96)
145 3d2w_A TAR DNA-binding protein 99.7 4.4E-18 1.5E-22 118.2 8.1 78 19-102 8-85 (89)
146 1x5p_A Negative elongation fac 99.7 3.2E-17 1.1E-21 115.2 12.4 77 18-102 11-88 (97)
147 1wf0_A TDP-43, TAR DNA-binding 99.7 3.1E-18 1.1E-22 118.3 6.7 76 20-101 3-78 (88)
148 2j8a_A Histone-lysine N-methyl 99.7 4.6E-18 1.6E-22 125.0 7.5 77 23-99 3-94 (136)
149 2i2y_A Fusion protein consists 99.7 1.2E-17 4.2E-22 126.4 10.1 80 17-101 68-148 (150)
150 3md3_A Nuclear and cytoplasmic 99.7 3.3E-17 1.1E-21 124.5 12.4 82 18-99 83-165 (166)
151 2qfj_A FBP-interacting repress 99.7 2.9E-17 9.9E-22 130.3 12.5 83 20-102 123-206 (216)
152 1fxl_A Paraneoplastic encephal 99.7 2.9E-17 1E-21 124.8 11.9 80 22-101 2-82 (167)
153 1b7f_A Protein (SXL-lethal pro 99.7 2.4E-17 8.3E-22 125.7 11.1 81 21-101 2-83 (168)
154 2cjk_A Nuclear polyadenylated 99.7 4.9E-18 1.7E-22 129.6 7.2 81 21-101 86-166 (167)
155 1whx_A Hypothetical protein ri 99.7 1.3E-17 4.5E-22 120.4 9.0 77 20-102 8-85 (111)
156 1sjr_A Polypyrimidine tract-bi 99.7 4.2E-17 1.5E-21 125.3 12.2 80 18-101 42-124 (164)
157 2e44_A Insulin-like growth fac 99.7 2E-17 6.9E-22 115.8 9.0 78 20-101 13-92 (96)
158 2yh0_A Splicing factor U2AF 65 99.7 4.1E-17 1.4E-21 127.8 11.7 83 20-102 112-195 (198)
159 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-17 3.9E-22 121.1 7.9 78 19-98 5-85 (114)
160 3egn_A RNA-binding protein 40; 99.7 3.8E-18 1.3E-22 128.3 4.6 86 19-104 42-133 (143)
161 1wg1_A KIAA1579 protein, homol 99.7 2.9E-17 9.8E-22 113.5 8.1 74 20-100 3-77 (88)
162 2g4b_A Splicing factor U2AF 65 99.7 6.9E-17 2.4E-21 123.8 11.0 79 20-98 92-171 (172)
163 3zzy_A Polypyrimidine tract-bi 99.7 1.3E-16 4.5E-21 118.2 12.0 81 16-101 22-106 (130)
164 2cjk_A Nuclear polyadenylated 99.7 2.4E-17 8.1E-22 125.8 8.2 79 21-100 2-80 (167)
165 2cq2_A Hypothetical protein LO 99.7 5.8E-17 2E-21 117.6 9.7 77 17-99 20-104 (114)
166 2voo_A Lupus LA protein; RNA-b 99.7 9E-17 3.1E-21 127.0 11.3 80 21-101 108-187 (193)
167 2hzc_A Splicing factor U2AF 65 99.7 5.8E-17 2E-21 111.2 8.8 71 20-96 4-85 (87)
168 4f02_A Polyadenylate-binding p 99.7 5.7E-17 2E-21 129.5 9.2 81 21-103 102-183 (213)
169 2qfj_A FBP-interacting repress 99.7 9.1E-17 3.1E-21 127.4 10.1 81 20-100 26-107 (216)
170 1b7f_A Protein (SXL-lethal pro 99.7 2.9E-16 9.9E-21 119.7 11.9 81 18-98 85-168 (168)
171 3md3_A Nuclear and cytoplasmic 99.7 2E-16 6.8E-21 120.1 10.7 78 23-101 1-79 (166)
172 2diu_A KIAA0430 protein; struc 99.7 4.6E-16 1.6E-20 108.3 11.1 73 21-103 7-86 (96)
173 2e5i_A Heterogeneous nuclear r 99.7 4.9E-16 1.7E-20 114.4 11.7 75 21-101 24-102 (124)
174 1fxl_A Paraneoplastic encephal 99.7 5E-16 1.7E-20 118.0 11.1 79 20-98 86-167 (167)
175 2bz2_A Negative elongation fac 99.7 2.8E-16 9.6E-21 115.2 9.3 76 18-101 35-111 (121)
176 3nmr_A Cugbp ELAV-like family 99.7 4.5E-16 1.5E-20 119.2 10.8 80 21-100 2-87 (175)
177 3tyt_A Heterogeneous nuclear r 99.6 6.4E-16 2.2E-20 123.2 10.4 76 21-101 3-80 (205)
178 3nmr_A Cugbp ELAV-like family 99.6 9.3E-16 3.2E-20 117.5 10.8 79 19-98 92-174 (175)
179 3pgw_A U1-A; protein-RNA compl 99.6 9E-16 3.1E-20 127.0 11.5 83 17-102 4-91 (282)
180 2pe8_A Splicing factor 45; RRM 99.6 2.2E-15 7.5E-20 107.8 11.1 81 20-100 6-93 (105)
181 3u1l_A PRE-mRNA-splicing facto 99.6 1.2E-15 4E-20 124.3 9.4 78 19-102 131-230 (240)
182 2ghp_A U4/U6 snRNA-associated 99.6 1.1E-15 3.8E-20 127.0 9.3 83 19-101 207-291 (292)
183 1fje_B Nucleolin RBD12, protei 99.6 1.5E-16 5.1E-21 122.5 3.5 83 18-101 9-91 (175)
184 1fje_B Nucleolin RBD12, protei 99.6 1.5E-15 5.2E-20 116.8 9.2 78 19-101 96-174 (175)
185 2adc_A Polypyrimidine tract-bi 99.6 3.9E-15 1.4E-19 120.0 11.7 77 20-101 32-110 (229)
186 3smz_A Protein raver-1, ribonu 99.6 8E-15 2.7E-19 121.3 13.0 81 21-101 94-175 (284)
187 3pgw_A U1-A; protein-RNA compl 99.6 5.9E-15 2E-19 122.0 11.6 77 18-99 203-281 (282)
188 3smz_A Protein raver-1, ribonu 99.6 4E-15 1.4E-19 123.2 10.0 85 18-103 180-266 (284)
189 2ghp_A U4/U6 snRNA-associated 99.6 7.1E-15 2.4E-19 122.1 9.7 82 16-99 35-116 (292)
190 1qm9_A Polypyrimidine tract-bi 99.6 7.2E-15 2.5E-19 115.3 8.4 76 21-101 2-79 (198)
191 2dit_A HIV TAT specific factor 99.6 5.2E-14 1.8E-18 101.4 12.0 82 17-102 10-103 (112)
192 2d9o_A DNAJ (HSP40) homolog, s 99.6 9.4E-14 3.2E-18 98.4 12.9 77 20-102 8-91 (100)
193 2g4b_A Splicing factor U2AF 65 99.5 2.2E-14 7.5E-19 109.7 9.8 73 21-99 3-86 (172)
194 3tyt_A Heterogeneous nuclear r 99.5 9.4E-15 3.2E-19 116.4 7.4 77 20-98 121-204 (205)
195 2yh0_A Splicing factor U2AF 65 99.5 2.5E-14 8.7E-19 111.7 8.9 74 21-100 3-87 (198)
196 3v4m_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 101.1 9.2 81 20-100 3-96 (105)
197 3sde_A Paraspeckle component 1 99.5 3.2E-14 1.1E-18 116.9 9.7 76 19-100 19-95 (261)
198 3sde_A Paraspeckle component 1 99.5 4.9E-14 1.7E-18 115.8 10.8 80 21-101 95-179 (261)
199 2adc_A Polypyrimidine tract-bi 99.5 5.2E-14 1.8E-18 113.4 10.4 77 20-101 149-228 (229)
200 1jmt_A Splicing factor U2AF 35 99.5 7.9E-15 2.7E-19 104.7 4.9 71 27-98 20-103 (104)
201 1qm9_A Polypyrimidine tract-bi 99.5 3.6E-14 1.2E-18 111.3 8.5 77 20-101 118-197 (198)
202 3ue2_A Poly(U)-binding-splicin 99.5 1.8E-13 6.2E-18 99.8 9.2 80 21-100 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 4.3E-13 1.5E-17 114.4 8.7 76 17-98 13-96 (345)
204 3s6e_A RNA-binding protein 39; 99.2 1.4E-11 4.8E-16 89.2 6.7 76 21-100 6-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 6.3E-11 2.2E-15 81.6 8.2 72 21-100 6-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 7.4E-11 2.5E-15 86.0 8.6 74 20-99 16-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 3.1E-10 1.1E-14 78.6 4.6 71 21-99 14-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 3.5E-09 1.2E-13 84.6 8.9 66 34-99 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 1.4E-06 4.9E-11 61.6 8.7 71 21-97 20-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.3 2E-05 6.7E-10 55.2 11.3 73 18-98 4-81 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.5 0.00065 2.2E-08 48.8 9.1 72 20-98 22-94 (119)
212 1uw4_A UPF3X; nonsense mediate 97.4 0.00088 3E-08 45.9 7.8 67 23-89 2-71 (91)
213 1wey_A Calcipressin 1; structu 97.4 0.00073 2.5E-08 47.3 7.4 75 20-100 3-83 (104)
214 1whv_A Poly(A)-specific ribonu 97.3 0.00074 2.5E-08 46.7 6.5 52 22-82 16-67 (100)
215 3ctr_A Poly(A)-specific ribonu 97.0 0.0011 3.6E-08 46.0 4.9 50 24-82 8-57 (101)
216 3pq1_A Poly(A) RNA polymerase; 96.7 0.00087 3E-08 59.0 3.1 56 22-83 53-108 (464)
217 2l08_A Regulator of nonsense t 96.2 0.0035 1.2E-07 43.3 3.2 69 21-89 8-79 (97)
218 3p3d_A Nucleoporin 53; structu 96.1 0.0098 3.3E-07 43.3 5.3 76 23-99 8-97 (132)
219 2kn4_A Immunoglobulin G-bindin 95.0 0.026 9E-07 41.6 4.4 31 51-83 2-32 (158)
220 2i2y_A Fusion protein consists 92.2 0.073 2.5E-06 38.9 2.5 39 61-100 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 86.4 1.6 5.4E-05 38.7 6.9 52 22-82 440-491 (507)
222 4f25_A Polyadenylate-binding p 72.2 0.77 2.6E-05 31.8 0.0 19 20-38 95-113 (115)
223 2g0c_A ATP-dependent RNA helic 64.4 23 0.0008 22.1 6.2 66 24-98 2-74 (76)
224 4e8u_A Putative uncharacterize 52.6 52 0.0018 24.7 6.9 57 24-83 14-82 (172)
225 2cu1_A Mitogen-activated prote 42.7 50 0.0017 22.5 4.9 47 29-83 23-70 (103)
226 2i9x_A Putative septation prot 37.4 48 0.0016 21.9 4.2 26 48-73 5-30 (87)
227 2jni_A Arenicin-2; peptide, an 34.8 19 0.00063 17.6 1.3 10 195-204 2-11 (26)
228 3fry_A Probable copper-exporti 32.1 82 0.0028 18.7 5.8 58 22-86 6-63 (73)
229 2ia9_A Putative septation prot 32.0 64 0.0022 21.9 4.2 26 48-73 5-30 (100)
230 3fut_A Dimethyladenosine trans 30.7 30 0.001 27.7 2.8 33 23-56 111-143 (271)
231 2i9z_A Putative septation prot 30.7 70 0.0024 21.9 4.2 26 48-73 5-30 (105)
232 1i4w_A Mitochondrial replicati 29.3 60 0.002 27.1 4.5 22 24-45 144-165 (353)
233 3ts2_A Protein LIN-28 homolog 27.4 9.5 0.00032 27.9 -0.7 28 37-72 2-29 (148)
234 3uzu_A Ribosomal RNA small sub 27.3 17 0.00057 29.3 0.7 35 23-57 115-149 (279)
235 2xk0_A Polycomb protein PCL; t 25.4 82 0.0028 19.8 3.5 11 64-74 41-51 (69)
236 3mfb_A Uncharacterized protein 25.4 1.2E+02 0.0042 22.3 5.0 36 34-69 3-41 (157)
237 3swz_A Steroid 17-alpha-hydrox 24.6 1.3E+02 0.0044 25.3 5.9 59 24-91 16-78 (494)
238 4bby_A Alkyldihydroxyacetoneph 23.4 81 0.0028 28.5 4.5 53 29-82 350-406 (658)
239 2pk2_A Cyclin-T1, protein TAT; 23.3 17 0.00059 30.4 0.0 16 30-45 225-240 (358)
240 3tqs_A Ribosomal RNA small sub 21.7 22 0.00075 28.1 0.3 32 25-56 99-130 (255)
241 1fme_A FSD-EY peptide; beta-BE 20.8 58 0.002 16.1 1.7 12 35-46 14-25 (28)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=144.25 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=76.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
+.++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+ +++..|.|++|+|++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56799999999999999999999999999999999999999999999999999999999996 69999999999999996
Q ss_pred c
Q 028402 100 L 100 (209)
Q Consensus 100 ~ 100 (209)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 2
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.7e-22 Score=139.75 Aligned_cols=87 Identities=26% Similarity=0.479 Sum_probs=80.8
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
..++.+.++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.+.++|++||++++..|+|+.|+|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccC
Q 028402 96 NLACLGV 102 (209)
Q Consensus 96 ~~a~~~~ 102 (209)
+++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9996543
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=4e-22 Score=152.31 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=77.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|||+|||+++||++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
++.
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 4
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=141.47 Aligned_cols=86 Identities=59% Similarity=1.005 Sum_probs=79.3
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l 93 (209)
.+..+.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+. ++ .|.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 445667889999999999999999999999999999999999999999999999999999999999975 65 8999999
Q ss_pred EEEEcccc
Q 028402 94 NCNLACLG 101 (209)
Q Consensus 94 ~v~~a~~~ 101 (209)
+|+++...
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999644
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=142.03 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=78.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
+.+.++|||+||++++||++|+++|++||+|++|+|++|+.|++++|||||+|++.++|++||+ +|+..|+|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999996 699999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=145.83 Aligned_cols=85 Identities=25% Similarity=0.393 Sum_probs=79.3
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
.++...++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345667899999999999999999999999999999999999999999999999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
++++.+
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999654
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.6e-21 Score=136.63 Aligned_cols=85 Identities=31% Similarity=0.486 Sum_probs=79.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
+..+.++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|.|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44677899999999999999999999999999999999999999999999999999999999995 69999999999999
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
+++.+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 996553
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=1.3e-21 Score=141.98 Aligned_cols=89 Identities=26% Similarity=0.313 Sum_probs=81.0
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
.+..+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999995 69999999999
Q ss_pred EEEEccccCC
Q 028402 94 NCNLACLGVQ 103 (209)
Q Consensus 94 ~v~~a~~~~~ 103 (209)
+|++++++..
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999965543
No 9
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.86 E-value=2.2e-22 Score=163.46 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=75.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
..++|||+||++++||++|+++|++|| +|++|+|++|+.|++++|||||+|.+.++|++||+ +++..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999997 699999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=2.2e-22 Score=140.71 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=75.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh--CCCccCCeEEEEEEc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD--AAPVIDGRRANCNLA 98 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~--~~~~l~g~~l~v~~a 98 (209)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|++++|||||+|.+.++|++||+. ++..|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 899999999999999999999999999999999974 456799999999999
Q ss_pred cccCC
Q 028402 99 CLGVQ 103 (209)
Q Consensus 99 ~~~~~ 103 (209)
.++.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 65543
No 11
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=1.9e-21 Score=134.21 Aligned_cols=82 Identities=34% Similarity=0.709 Sum_probs=76.9
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
.++.+.++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||++++..|+|+.|+|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999888889999999998
Q ss_pred Ec
Q 028402 97 LA 98 (209)
Q Consensus 97 ~a 98 (209)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=9e-21 Score=137.47 Aligned_cols=90 Identities=34% Similarity=0.451 Sum_probs=82.0
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
.+.+..+.++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678899999999999999999999999999999999999999999999999999999999996 69999999999
Q ss_pred EEEEccccCCC
Q 028402 94 NCNLACLGVQR 104 (209)
Q Consensus 94 ~v~~a~~~~~~ 104 (209)
+|+++..+...
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999655443
No 13
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=5.2e-21 Score=136.19 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=78.6
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
+..+.+.++|||+|||+++|+++|+++|++|| |++|+|++++.+++++|||||+|.+.++|++||++++..|.|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 34456778999999999999999999999996 99999999999999999999999999999999977999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
+++.++
T Consensus 88 ~~a~~~ 93 (103)
T 2dng_A 88 DIAEGR 93 (103)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999544
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=137.62 Aligned_cols=86 Identities=21% Similarity=0.388 Sum_probs=80.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+.+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.|++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4455678999999999999999999999999999999999999999999999999999999999997 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++..
T Consensus 87 V~~a~~~ 93 (103)
T 2dnm_A 87 VQVARYG 93 (103)
T ss_dssp EEECSSC
T ss_pred EEECCcC
Confidence 9999644
No 15
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.5e-21 Score=135.97 Aligned_cols=87 Identities=36% Similarity=0.613 Sum_probs=79.4
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
.+..+.+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++.|+|+.|.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEE
Confidence 34455678899999999999999999999999999999999999999999999999999999999998 46789999999
Q ss_pred EEEccccC
Q 028402 95 CNLACLGV 102 (209)
Q Consensus 95 v~~a~~~~ 102 (209)
|+++..+.
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99996553
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.5e-21 Score=132.88 Aligned_cols=82 Identities=32% Similarity=0.538 Sum_probs=77.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.+.++|++||+ +++..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
..+
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 533
No 17
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=2.9e-21 Score=139.29 Aligned_cols=87 Identities=33% Similarity=0.612 Sum_probs=76.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
.++.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+..+..|+|+.|+|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999876788999999999
Q ss_pred EccccCC
Q 028402 97 LACLGVQ 103 (209)
Q Consensus 97 ~a~~~~~ 103 (209)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9965543
No 18
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.4e-21 Score=136.34 Aligned_cols=85 Identities=16% Similarity=0.401 Sum_probs=78.4
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCC-CCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t-g~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
+..+.+.++|||+|||+++|+++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++||++++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34456778999999999999999999999999 999999999988 9999999999999999999997799999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|+++.++
T Consensus 88 V~~a~~~ 94 (104)
T 1wi8_A 88 VDVADQA 94 (104)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999654
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.4e-21 Score=137.22 Aligned_cols=89 Identities=27% Similarity=0.410 Sum_probs=81.0
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hC------CCcc
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA------APVI 88 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~------~~~l 88 (209)
+.+..+.++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+ ++ +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3455678899999999999999999999999999999999999999999999999999999999996 58 8999
Q ss_pred CCeEEEEEEccccCCC
Q 028402 89 DGRRANCNLACLGVQR 104 (209)
Q Consensus 89 ~g~~l~v~~a~~~~~~ 104 (209)
+|+.|+|+++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999655433
No 20
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=138.69 Aligned_cols=88 Identities=34% Similarity=0.700 Sum_probs=80.9
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
...++.+.++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999997788899999999
Q ss_pred EEEccccC
Q 028402 95 CNLACLGV 102 (209)
Q Consensus 95 v~~a~~~~ 102 (209)
|+++.++.
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99886443
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.8e-21 Score=135.54 Aligned_cols=86 Identities=27% Similarity=0.344 Sum_probs=79.9
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+.+....++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455677899999999999999999999999999999999999999999999999999999999997 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|+++.++
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9999554
No 22
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=9.6e-21 Score=138.05 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
+..+.++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44677899999999999999999999999999999999998 89999999999999999999996 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++..
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99644
No 23
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=2e-21 Score=141.58 Aligned_cols=85 Identities=27% Similarity=0.371 Sum_probs=78.4
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
.+.++.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +++..|+|++|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 33456677899999999999999999999999999999999999999999999999999999999997 69999999999
Q ss_pred EEEEcc
Q 028402 94 NCNLAC 99 (209)
Q Consensus 94 ~v~~a~ 99 (209)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999873
No 24
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=8.7e-22 Score=138.88 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=76.2
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCC--EEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCC----cc
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGE--ILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP----VI 88 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~----~l 88 (209)
...+....+|||+|||+++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+ +++. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 345678899999999999999999999999995 6799999999999999999999999999999996 5665 59
Q ss_pred CCeEEEEEEcc
Q 028402 89 DGRRANCNLAC 99 (209)
Q Consensus 89 ~g~~l~v~~a~ 99 (209)
+|++|.|++|+
T Consensus 83 ~Gr~i~V~~Ak 93 (95)
T 2lkz_A 83 DGKTIGVDFAK 93 (95)
T ss_dssp TTEEEEEEECC
T ss_pred CCEEEEEEEcc
Confidence 99999999985
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.7e-21 Score=135.51 Aligned_cols=85 Identities=26% Similarity=0.350 Sum_probs=79.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
.+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
+++.++
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999544
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.7e-21 Score=135.21 Aligned_cols=85 Identities=35% Similarity=0.637 Sum_probs=78.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44577899999999999999999999999999999999999999999999999999999999995 69999999999999
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
+++.+.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 996543
No 27
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=5.5e-21 Score=136.55 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=79.6
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc---CC
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI---DG 90 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l---~g 90 (209)
.+..+.+.++|||+|||.++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..+ .+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 34456678999999999999999999999999999999999999999999999999999999999996 688887 88
Q ss_pred eEEEEEEcccc
Q 028402 91 RRANCNLACLG 101 (209)
Q Consensus 91 ~~l~v~~a~~~ 101 (209)
+.|+|+++..+
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999999654
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.4e-21 Score=134.13 Aligned_cols=82 Identities=27% Similarity=0.416 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEE-EEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
.+.++|||+|||+++|+++|+++|++||.|.+| +|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 999999999999999999999999999997 699999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+.++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9544
No 29
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=135.02 Aligned_cols=88 Identities=24% Similarity=0.364 Sum_probs=79.6
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhh-CCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc-cCCeEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV-IDGRRA 93 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~-l~g~~l 93 (209)
.+..+.++|||+|||+++|+++|+++|++ ||.|.+|+|+.++ +++++|||||+|.+.++|++||+ +++.. |+|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567789999999999999999999999 9999999999998 99999999999999999999997 69989 999999
Q ss_pred EEEEccccCCCC
Q 028402 94 NCNLACLGVQRS 105 (209)
Q Consensus 94 ~v~~a~~~~~~~ 105 (209)
+|+++..+..+.
T Consensus 83 ~v~~a~~~~~~~ 94 (104)
T 2dhg_A 83 RLSVAIPKASRV 94 (104)
T ss_dssp CCCBCCCCCSCC
T ss_pred EEEEccCCCcCC
Confidence 999986554433
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=134.92 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=80.0
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeec-CCCCCcccEEEEEECCHHHHHHHHH-h-CCCccCCeE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRR 92 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~~g~aFV~F~~~~~a~~al~-~-~~~~l~g~~ 92 (209)
+..+.+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +.+++++|||||+|.+.++|++||+ + ++..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567899999999999999999999999999999999999 7899999999999999999999996 6 899999999
Q ss_pred EEEEEccccC
Q 028402 93 ANCNLACLGV 102 (209)
Q Consensus 93 l~v~~a~~~~ 102 (209)
|+|++++++.
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999996543
No 31
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=6.2e-21 Score=140.47 Aligned_cols=88 Identities=22% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+....+.++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4455677899999999999999999999999999999999999999999999999999999999996 699999999999
Q ss_pred EEEccccCC
Q 028402 95 CNLACLGVQ 103 (209)
Q Consensus 95 v~~a~~~~~ 103 (209)
|+++..+..
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999975543
No 32
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.4e-21 Score=135.67 Aligned_cols=85 Identities=31% Similarity=0.377 Sum_probs=78.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999996 69999999999999
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 996543
No 33
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.8e-22 Score=142.99 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=80.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~ 97 (209)
++...++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||.+++..|+|+.|+|++
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 34466899999999999999999999999999999999999999999999999999999999997799999999999999
Q ss_pred ccccCCC
Q 028402 98 ACLGVQR 104 (209)
Q Consensus 98 a~~~~~~ 104 (209)
+..+..+
T Consensus 101 a~~~~~~ 107 (114)
T 2cq4_A 101 SQAEKNR 107 (114)
T ss_dssp HHHHHHH
T ss_pred cCCCccC
Confidence 9765443
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.5e-20 Score=128.25 Aligned_cols=80 Identities=33% Similarity=0.471 Sum_probs=75.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEccc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~ 100 (209)
+.+|||+|||+++++++|+++|++||+|.+|.|++++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999997 699999999999999964
Q ss_pred c
Q 028402 101 G 101 (209)
Q Consensus 101 ~ 101 (209)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-21 Score=140.47 Aligned_cols=84 Identities=36% Similarity=0.650 Sum_probs=78.1
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
+.+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34568999999999999999999999999999999999999999999999999999999999988889999999999998
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
.++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 6543
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=132.94 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=77.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCC---CCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
..+.++|||+|||+++|+++|+++|++||+|++|+|+.++. |++++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35678999999999999999999999999999999999886 66899999999999999999997 699999999999
Q ss_pred EEEccccC
Q 028402 95 CNLACLGV 102 (209)
Q Consensus 95 v~~a~~~~ 102 (209)
|+++..+.
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99996543
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=134.19 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=79.8
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+....+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3445677899999999999999999999999999999999999999999999999999999999997 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|+++.++
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9999654
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=129.57 Aligned_cols=82 Identities=37% Similarity=0.493 Sum_probs=75.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|||+|||.++|+++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356799999999999999999999999999999999999999999999999999999999997 6999999999999998
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3e-20 Score=132.48 Aligned_cols=85 Identities=26% Similarity=0.287 Sum_probs=77.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC---eEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG---RRA 93 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g---~~l 93 (209)
.+...++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+ +++..+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999998 79999999999999999999996 69999888 999
Q ss_pred EEEEccccCC
Q 028402 94 NCNLACLGVQ 103 (209)
Q Consensus 94 ~v~~a~~~~~ 103 (209)
+|+++..+..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999965543
No 40
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=135.69 Aligned_cols=89 Identities=31% Similarity=0.486 Sum_probs=81.7
Q ss_pred cCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe
Q 028402 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (209)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~ 91 (209)
.+.+..+...++|||+|||.++|+++|+++|++||+|.+|.|++++.+++++|||||+|.+.++|++||+ +++..|.|+
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445566778999999999999999999999999999999999999999999999999999999999996 699999999
Q ss_pred EEEEEEcccc
Q 028402 92 RANCNLACLG 101 (209)
Q Consensus 92 ~l~v~~a~~~ 101 (209)
.|+|++++++
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999998654
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=132.15 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=77.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
..+.+.++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345677899999999999999999999999999999999998 89999999999999999999995 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
++++++
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999654
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=135.84 Aligned_cols=86 Identities=23% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEE--------EEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCC
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP 86 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~ 86 (209)
+.++.+.++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++||+ +++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44567889999999999999999999999999999 69999999999999999999999999999997 6999
Q ss_pred ccCCeEEEEEEcccc
Q 028402 87 VIDGRRANCNLACLG 101 (209)
Q Consensus 87 ~l~g~~l~v~~a~~~ 101 (209)
.|.|+.|+|++++.+
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLARKK 103 (113)
T ss_dssp EETTEECEEECSSCC
T ss_pred ccCCCEEEEEECCCC
Confidence 999999999998544
No 43
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4e-20 Score=131.50 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=77.4
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
..++...++|||+|||+++|+++|+++|++||.|++|+|++++.+ ++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 445667899999999999999999999999999999999998643 68999999999999999997 799999999999
Q ss_pred EEEccccCC
Q 028402 95 CNLACLGVQ 103 (209)
Q Consensus 95 v~~a~~~~~ 103 (209)
|++++.+..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999965443
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=132.15 Aligned_cols=85 Identities=31% Similarity=0.452 Sum_probs=78.2
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
...+.+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345567899999999999999999999999999999999998 89999999999999999999997 699999999999
Q ss_pred EEEccccC
Q 028402 95 CNLACLGV 102 (209)
Q Consensus 95 v~~a~~~~ 102 (209)
|+++.++.
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 99996543
No 45
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=131.16 Aligned_cols=84 Identities=20% Similarity=0.384 Sum_probs=77.9
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
.....+.++|||+|||+++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..|.|++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3344577899999999999999999999999999999999999999999999999999999999996 699999999999
Q ss_pred EEEcc
Q 028402 95 CNLAC 99 (209)
Q Consensus 95 v~~a~ 99 (209)
|++++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.6e-20 Score=128.75 Aligned_cols=81 Identities=32% Similarity=0.442 Sum_probs=76.5
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
+.+.++|||+|||+++++++|+++|++||+|.+|.|++++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999995 699999999999998
Q ss_pred cc
Q 028402 98 AC 99 (209)
Q Consensus 98 a~ 99 (209)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=130.79 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=78.5
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
.....+.++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.+.++|++||+ +++..|+|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445677899999999999999999999999999999999999999999999999999999999997 699999999999
Q ss_pred EEEcc
Q 028402 95 CNLAC 99 (209)
Q Consensus 95 v~~a~ 99 (209)
|++++
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99984
No 48
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=9.8e-20 Score=131.67 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=77.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
......++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 445667899999999999999999999999999999999998 59999999999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
+++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998543
No 49
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=143.41 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=79.9
Q ss_pred cCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE--EEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCC---
Q 028402 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP--- 86 (209)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~--- 86 (209)
...+..+...++|||+|||+++||++|+++|++||.|.. |+|++|+.|++++|||||+|.+. +|++||+ +++.
T Consensus 14 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 344556678899999999999999999999999999977 99999999999999999999999 9999996 6998
Q ss_pred -ccCCeEEEEEEcccc
Q 028402 87 -VIDGRRANCNLACLG 101 (209)
Q Consensus 87 -~l~g~~l~v~~a~~~ 101 (209)
.|+|+.|+|+++++.
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 999999999999654
No 50
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=135.10 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=76.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~ 97 (209)
.+...++|||+|||+++|+++|+++|++||+|.+|.|++++. ++++|||||+|.+.++|++||++++..|+|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999987 9999999999999999999999999999999999998
Q ss_pred ccc
Q 028402 98 ACL 100 (209)
Q Consensus 98 a~~ 100 (209)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 51
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=136.11 Aligned_cols=84 Identities=18% Similarity=0.401 Sum_probs=74.2
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecC-CCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
......++|||+|||+++|+++|+++|++|| |.+|+|++++ .+++++|||||+|.+.++|++||++++..|+|+.|+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3446779999999999999999999999999 9999999998 6899999999999999999999977999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
++++.+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998543
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2.5e-20 Score=134.11 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=80.9
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
.+....+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999997 69999999999
Q ss_pred EEEEccccC
Q 028402 94 NCNLACLGV 102 (209)
Q Consensus 94 ~v~~a~~~~ 102 (209)
+|+++.++.
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999996553
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=130.74 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=76.4
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
.+..+...++|||+|||+++++++|+++|++||+|++|+|++++. ++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 344556779999999999999999999999999999999999985 9999999999999999999997 69999999999
Q ss_pred EEEEcc
Q 028402 94 NCNLAC 99 (209)
Q Consensus 94 ~v~~a~ 99 (209)
+|++++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999884
No 54
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=143.82 Aligned_cols=80 Identities=23% Similarity=0.420 Sum_probs=75.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~-~~~~l~g~~l~v~~ 97 (209)
..++|||+|||+++||++|+++|++|| +|.+|+|+.|+.|++++|||||+|.+.++|++||+. ++..|+|+.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999975 99999999999999
Q ss_pred ccc
Q 028402 98 ACL 100 (209)
Q Consensus 98 a~~ 100 (209)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 55
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.6e-20 Score=128.72 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|+.+++..|.|+.|+|+++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45799999999999999999999999999999999999999999999999999999999997799999999999999854
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.9e-20 Score=129.65 Aligned_cols=87 Identities=29% Similarity=0.479 Sum_probs=77.8
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
....+.+.++|||+|||+++|+++|+++|++||.|++|+|+.++. .++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344556789999999999999999999999999999999999864 389999999999999999997 69999999999
Q ss_pred EEEEccccCC
Q 028402 94 NCNLACLGVQ 103 (209)
Q Consensus 94 ~v~~a~~~~~ 103 (209)
+|+++.++..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999965543
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.4e-20 Score=135.65 Aligned_cols=80 Identities=28% Similarity=0.407 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
..++|||+|||+++||++|+++|++||+|++|+|++|+ +.++|||||+|.+.++|++||+ +++..|+|+.|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 4589999999999999999996 69999999999999986
Q ss_pred ccC
Q 028402 100 LGV 102 (209)
Q Consensus 100 ~~~ 102 (209)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=131.05 Aligned_cols=82 Identities=28% Similarity=0.419 Sum_probs=77.2
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~ 87 (209)
......++|||+|||+++|+++|+++|++||.|++ |+|+.++.+++++|||||+|.+.++|++||+ +++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34457789999999999999999999999999999 9999999999999999999999999999996 69999
Q ss_pred cCCeEEEEEEc
Q 028402 88 IDGRRANCNLA 98 (209)
Q Consensus 88 l~g~~l~v~~a 98 (209)
|.|+.|+|+++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999987
No 59
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.3e-21 Score=134.09 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCC--CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
.+|||+|||+++||++|+++|++|| +|.+|+|+.|+.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999996 79999999999999986
Q ss_pred ccC
Q 028402 100 LGV 102 (209)
Q Consensus 100 ~~~ 102 (209)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 60
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=3.3e-20 Score=130.32 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
+.++|||+|||.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999996 69999999999999996
Q ss_pred ccC
Q 028402 100 LGV 102 (209)
Q Consensus 100 ~~~ 102 (209)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 61
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=133.36 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=74.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
......++|||+|||+++||++|+++|++||. .+|+|++|+ +++++|||||+|.+.++|++||++++..|+++.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456789999999999999999999999995 599999998 8999999999999999999999889999999999999
Q ss_pred Ecc
Q 028402 97 LAC 99 (209)
Q Consensus 97 ~a~ 99 (209)
.+.
T Consensus 88 ~~~ 90 (102)
T 1wez_A 88 LNS 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 62
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=6.5e-21 Score=127.85 Aligned_cols=75 Identities=40% Similarity=0.738 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
+|||+|||+++|+++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|+++++..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999865
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=130.79 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEE-EEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeE---
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL-EAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR--- 92 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~--- 92 (209)
.....++|||+|||+++||++|+++|++||+|. +|+|++++.+++++|||||+|.+.++|++||+ +++..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345778999999999999999999999999999 99999999999999999999999999999997 6999999999
Q ss_pred -EEEEEccc
Q 028402 93 -ANCNLACL 100 (209)
Q Consensus 93 -l~v~~a~~ 100 (209)
|+|+++++
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99998843
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=7.2e-21 Score=135.08 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCC------CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC-
Q 028402 19 DTTYTKVFVGGLAW------ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG- 90 (209)
Q Consensus 19 ~~~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g- 90 (209)
+...++|||+|||. ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++||+ +++..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 99999999999999999999999999999999999999999999999996 69999999
Q ss_pred eEEEEEEcccc
Q 028402 91 RRANCNLACLG 101 (209)
Q Consensus 91 ~~l~v~~a~~~ 101 (209)
+.|+|+++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998654
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.3e-20 Score=138.64 Aligned_cols=86 Identities=23% Similarity=0.387 Sum_probs=79.8
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
..+..+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +++..|+|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455677899999999999999999999999999999999999999999999999999999999997 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|+++.++
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998543
No 66
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-21 Score=138.98 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=77.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCE-EEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
.+.+.++|||+|||+++|+++|+++|++||.| .+|+|++|+ +++++|||||+|.+.++|++||++++..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999999999999999999999 899999998 8999999999999999999999889999999999999
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986553
No 67
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=4.7e-20 Score=135.40 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
+.++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||++++..|+|+.|+|++++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999997799999999999999853
No 68
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=130.57 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=75.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE-EEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
+....++|||+|||+++||++|+++|++||.|.+ |.|+.+ .+++++|||||+|.+.++|++||+.++..|+++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999998 889888 78999999999999999999999889999999999999
Q ss_pred Eccc
Q 028402 97 LACL 100 (209)
Q Consensus 97 ~a~~ 100 (209)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wg5_A 90 KSSR 93 (104)
T ss_dssp EECT
T ss_pred ECCH
Confidence 8843
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=127.15 Aligned_cols=82 Identities=27% Similarity=0.408 Sum_probs=75.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCC-cccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR-SKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~-~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
...++|||+|||.++|+++|+++|++||.|.+|.|+.++.++. ++|||||+|.+.++|++|++ +++..|+|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999987766 89999999999999999997 699999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8543
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=126.67 Aligned_cols=83 Identities=19% Similarity=0.299 Sum_probs=76.9
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
..+...++|||+|||+++|+++|+++|++| .|.+|+|+++ .+++++|||||+|.+.++|++||++++..|+|+.|+|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 344677899999999999999999999999 9999999999 78999999999999999999999999999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
++..+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98544
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=1.4e-19 Score=125.82 Aligned_cols=83 Identities=27% Similarity=0.483 Sum_probs=75.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
..+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34467789999999999999999999999999999999984 78999999999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
+++++.
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 998543
No 72
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=1.9e-19 Score=158.72 Aligned_cols=84 Identities=21% Similarity=0.460 Sum_probs=78.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|||+|||+++|+++|+++|++||.|+.|.|+.++.|++++|||||+|.+.++|++||+ +++..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999995 6999999999999999
Q ss_pred cccCC
Q 028402 99 CLGVQ 103 (209)
Q Consensus 99 ~~~~~ 103 (209)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 76544
No 73
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=129.26 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
....+.+.++|||+|||+++|+++|+++|++||.|++|+|..+ ++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3345567789999999999999999999999999999999654 5589999999999999999995 69999999999
Q ss_pred EEEEcccc
Q 028402 94 NCNLACLG 101 (209)
Q Consensus 94 ~v~~a~~~ 101 (209)
+|++++.+
T Consensus 92 ~V~~a~~~ 99 (109)
T 1x4a_A 92 RVEFPRSG 99 (109)
T ss_dssp EEECCCCC
T ss_pred EEEEcccC
Confidence 99998543
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-20 Score=133.20 Aligned_cols=87 Identities=26% Similarity=0.505 Sum_probs=79.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
..+...++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred EEccccCC
Q 028402 96 NLACLGVQ 103 (209)
Q Consensus 96 ~~a~~~~~ 103 (209)
+++..+..
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99965543
No 75
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=129.25 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=77.4
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCC-EEEEEEe-ecCCCCCcccEEEEEECCHHHHHHHHH-hC--CCccCCeEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRAN 94 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~tg~~~g~aFV~F~~~~~a~~al~-~~--~~~l~g~~l~ 94 (209)
.+.++|||+|||+++|+++|+++|++||. |.+|.|+ .++.+++++|||||+|.+.++|++||+ ++ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 888899999999999999999999997 55 4889999999
Q ss_pred EEEccccCCC
Q 028402 95 CNLACLGVQR 104 (209)
Q Consensus 95 v~~a~~~~~~ 104 (209)
|+++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999766543
No 76
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=1.6e-19 Score=129.16 Aligned_cols=83 Identities=30% Similarity=0.421 Sum_probs=77.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+....+.++|||+|||+++|+++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678899999999999999999999999999999999998 89999999999999999999997 699999999999
Q ss_pred EEEcc
Q 028402 95 CNLAC 99 (209)
Q Consensus 95 v~~a~ 99 (209)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99874
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=3.6e-19 Score=126.66 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=73.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+....+.++|||+|||+++|+++|+++|++||+|++|+|+ ++||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 3445677899999999999999999999999999999986 4599999999999999997 699999999999
Q ss_pred EEEccccCCCCC
Q 028402 95 CNLACLGVQRSK 106 (209)
Q Consensus 95 v~~a~~~~~~~~ 106 (209)
|++++++..+..
T Consensus 77 v~~a~~~~~~~~ 88 (103)
T 2dgu_A 77 IVFAKPPDQKRK 88 (103)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEcCCCcccch
Confidence 999976654443
No 78
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5e-20 Score=129.73 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=76.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.....++|||+|||+++++++|+++|++||.|+++.++.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999995 69999999999999
Q ss_pred Ecc
Q 028402 97 LAC 99 (209)
Q Consensus 97 ~a~ 99 (209)
++.
T Consensus 91 ~a~ 93 (98)
T 2cqp_A 91 LGS 93 (98)
T ss_dssp ESS
T ss_pred EcC
Confidence 984
No 79
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.5e-20 Score=126.04 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
+|||+|||+++|+++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|++||++++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998889999999999875
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=126.63 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCccEEEEcCCCCCCcHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 20 TTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
...++|||+|||+++++++|+ ++|++||+|++|+|+.++.+ ++||||+|.+.++|++||+ +++..|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356799999999999999999 99999999999999999876 8899999999999999997 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++++
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999544
No 81
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9e-20 Score=131.35 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=77.0
Q ss_pred CCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeE
Q 028402 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (209)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~ 92 (209)
.....+...++|||+|||.++|+++|+++|++||+|++|+|++++ +.++|||||+|.+.++|++|++ +++..|+|+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344556678999999999999999999999999999999999885 3589999999999999999997 6999999999
Q ss_pred EEEEEcccc
Q 028402 93 ANCNLACLG 101 (209)
Q Consensus 93 l~v~~a~~~ 101 (209)
|+|++++++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998644
No 82
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=129.87 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=70.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hC--CCccCCeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~--~~~l~g~~l~ 94 (209)
++.+.++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|++.++|++||+ ++ +.+|.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4467789999999999999999999999999999999875 6899999999999999997 44 4789999999
Q ss_pred EEEccccC
Q 028402 95 CNLACLGV 102 (209)
Q Consensus 95 v~~a~~~~ 102 (209)
|++++.+.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99986543
No 83
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=5.2e-20 Score=137.70 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=79.4
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+.++.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445567899999999999999999999999999999999999999999999999999999999996 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++..
T Consensus 121 V~~a~~~ 127 (135)
T 2lea_A 121 VQMARYG 127 (135)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999654
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=4.3e-20 Score=135.00 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=77.0
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCC---EEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
...+.++|||+|||+++||++|+++|+.||. |.+|+|++++. ++++|||||+|.+.++|++||++++..|+|+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 3456789999999999999999999999999 89999999987 9999999999999999999999999999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988543
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.2e-19 Score=137.06 Aligned_cols=84 Identities=27% Similarity=0.477 Sum_probs=78.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.....++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999996 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++++
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99654
No 86
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=4.4e-20 Score=129.22 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
....++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+ +++..|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999997 699999999999998
Q ss_pred cc
Q 028402 98 AC 99 (209)
Q Consensus 98 a~ 99 (209)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 87
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.6e-19 Score=126.82 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC-----e
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG-----R 91 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g-----~ 91 (209)
.....++|||+|||+++|+++|+++|++||+|++|+|+.+ |||||+|.+.++|++||+ +++.+|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999876 799999999999999997 69999999 9
Q ss_pred EEEEEEcccc
Q 028402 92 RANCNLACLG 101 (209)
Q Consensus 92 ~l~v~~a~~~ 101 (209)
.|+|+++.++
T Consensus 84 ~i~V~~a~~~ 93 (108)
T 1x4c_A 84 YIRVKVDGPR 93 (108)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999999654
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=135.11 Aligned_cols=82 Identities=32% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
..+.+.++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345577899999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred EEc
Q 028402 96 NLA 98 (209)
Q Consensus 96 ~~a 98 (209)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 89
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-20 Score=124.41 Aligned_cols=76 Identities=38% Similarity=0.748 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
++|||+|||+++++++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|++|++.....++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999986339999999999986
No 90
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=2.7e-19 Score=137.88 Aligned_cols=88 Identities=23% Similarity=0.290 Sum_probs=79.8
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
+....+.++|||+|||+++|+++|+++|++||+|..|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4445667899999999999999999999999999999999999999999999999999999999996 699999999999
Q ss_pred EEEccccCC
Q 028402 95 CNLACLGVQ 103 (209)
Q Consensus 95 v~~a~~~~~ 103 (209)
|.++..+..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976544
No 91
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=1.7e-20 Score=141.11 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~ 97 (209)
.....++|||+|||+++||++|+++|++|| |.+|+|++|++ ++++|||||+|++.++|++||++++..|+++.|+|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 335668999999999999999999999999 77999999986 9999999999999999999998899999999999988
Q ss_pred ccc
Q 028402 98 ACL 100 (209)
Q Consensus 98 a~~ 100 (209)
+..
T Consensus 120 a~~ 122 (139)
T 2hgn_A 120 NST 122 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 843
No 92
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.6e-20 Score=132.04 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=73.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
...++|||+|||+++||++|+++|+.| .|.+|+|++|+. ++++|||||+|.+.++|++||++++..|+|+.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 899999999986 999999999999999999999889999999999998875
Q ss_pred c
Q 028402 100 L 100 (209)
Q Consensus 100 ~ 100 (209)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 93
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=6.9e-20 Score=130.00 Aligned_cols=85 Identities=29% Similarity=0.502 Sum_probs=77.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
..+...++|||+|||+++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++||+ ++..|+|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 344567899999999999999999999999999999999998 99999999999999999999999 9999999999999
Q ss_pred EccccCC
Q 028402 97 LACLGVQ 103 (209)
Q Consensus 97 ~a~~~~~ 103 (209)
++..+..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9865543
No 94
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=4.7e-19 Score=130.14 Aligned_cols=83 Identities=29% Similarity=0.418 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.....++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999997 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99654
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=126.15 Aligned_cols=81 Identities=26% Similarity=0.342 Sum_probs=72.6
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
..+.+.++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++||+ +++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 355678999999999999999999999999977 56666 578999999999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
++++++
T Consensus 86 ~~a~~~ 91 (101)
T 2fc9_A 86 ELQGPR 91 (101)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 999554
No 96
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=8.7e-20 Score=136.74 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=76.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCC---EEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
+..+.++|||+|||+++||++|+++|++||. |++|+|++|+. ++++|||||+|.+.++|++||++++..|+|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 4456789999999999999999999999999 89999999987 9999999999999999999999999999999999
Q ss_pred EEEccc
Q 028402 95 CNLACL 100 (209)
Q Consensus 95 v~~a~~ 100 (209)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998854
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.2e-19 Score=124.90 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-h--CCCccCCeE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--AAPVIDGRR 92 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~--~~~~l~g~~ 92 (209)
.....+.++|||+|||+++||++|+++|++||+|++|.|+++ ||||||+|++.++|++||+ + ++..|.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344567789999999999999999999999999999998864 7899999999999999996 3 577899999
Q ss_pred EEEEEccccC
Q 028402 93 ANCNLACLGV 102 (209)
Q Consensus 93 l~v~~a~~~~ 102 (209)
|.|++++.+.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999996443
No 98
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-20 Score=126.75 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=72.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|||+|||+++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999999999999999999999999999997 6998999987765543
No 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=125.43 Aligned_cols=82 Identities=33% Similarity=0.445 Sum_probs=74.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
....+.++|||+|||+++|+++|+++|+.|+ +|.++.++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456778999999999999999999999773 68888898899999999999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
++++++
T Consensus 87 ~~a~~~ 92 (102)
T 2fc8_A 87 DWAKPK 92 (102)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999543
No 100
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=124.12 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=70.2
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-h--CCCccCCeE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--AAPVIDGRR 92 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~--~~~~l~g~~ 92 (209)
+....+.++|||+|||++++|++|+++|++||+|++|.|+++ ||||||+|++.++|++|++ + +...|.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 344567789999999999999999999999999999998764 7899999999999999996 4 345699999
Q ss_pred EEEEEcccc
Q 028402 93 ANCNLACLG 101 (209)
Q Consensus 93 l~v~~a~~~ 101 (209)
|.|++++.+
T Consensus 83 l~V~~a~~~ 91 (104)
T 1wex_A 83 AFFNYSTSK 91 (104)
T ss_dssp CEEEECSSS
T ss_pred EEEEEccCc
Confidence 999999654
No 101
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-19 Score=128.44 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=75.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHH---HHHhhCCCEEEEEEeecCCCC---CcccEEEEEECCHHHHHHHHH-hCCCccCC
Q 028402 18 GDTTYTKVFVGGLAWETQKETME---KYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~tg---~~~g~aFV~F~~~~~a~~al~-~~~~~l~g 90 (209)
.....++|||+|||++++|++|+ ++|++||+|.+|.|++++.++ +++|||||+|.+.++|++||+ +++..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999999988754 556999999999999999997 59999999
Q ss_pred eEEEEEEcccc
Q 028402 91 RRANCNLACLG 101 (209)
Q Consensus 91 ~~l~v~~a~~~ 101 (209)
+.|+|+++.++
T Consensus 91 r~l~V~~a~~k 101 (111)
T 2cpi_A 91 RTLKASLGTTK 101 (111)
T ss_dssp EEEEEESCCCC
T ss_pred EEEEEEecccc
Confidence 99999999544
No 102
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=120.74 Aligned_cols=76 Identities=30% Similarity=0.494 Sum_probs=69.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
++.+.++|||+|||+++|+++|+++|++||+|++|+|+ ++||||+|.+.++|++||+ +++..|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34677899999999999999999999999999999997 5799999999999999996 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++.+
T Consensus 76 ~a~~~ 80 (90)
T 2dnq_A 76 ASKNK 80 (90)
T ss_dssp CSSCC
T ss_pred ECCCC
Confidence 99544
No 103
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=127.23 Aligned_cols=83 Identities=17% Similarity=0.372 Sum_probs=75.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc-------
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI------- 88 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l------- 88 (209)
..+.+.++|||+|||+++|+++|+++|++||+|.+|+|+.++ +++++|||||+|.+.++|++||+ +++..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445677899999999999999999999999999999999998 89999999999999999999997 699888
Q ss_pred -CCeEEEEEEccc
Q 028402 89 -DGRRANCNLACL 100 (209)
Q Consensus 89 -~g~~l~v~~a~~ 100 (209)
.++.|.|+++.+
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 577899998853
No 104
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.4e-19 Score=133.78 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=73.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEE--EEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
.....++|||+|||+++||++|+++|+.| .|. +|+|++|+. ++++|||||+|.+.++|++||++++..|+|+.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34567899999999999999999999999 677 999999987 99999999999999999999998889999999999
Q ss_pred EEccc
Q 028402 96 NLACL 100 (209)
Q Consensus 96 ~~a~~ 100 (209)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88743
No 105
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-20 Score=131.43 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
....++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++||++++..|.|+.|+|+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 346789999999999999999999999999988 6777878899999999999999999999999999999999999998
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 106
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-20 Score=134.79 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
....++|||+|||+++||++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||++++..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 44668999999999999999999999999999977777778999999999999999999999999999999999999998
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=4.4e-19 Score=127.66 Aligned_cols=82 Identities=24% Similarity=0.396 Sum_probs=70.7
Q ss_pred cCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe
Q 028402 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (209)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~ 91 (209)
...+..+...++|||+|||+++|+++|+++|++||.|++|.|+ +|||||+|.+.++|++|++ +++..|+|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3344566788999999999999999999999999999999997 6899999999999999996 699999999
Q ss_pred EEEEEEccccC
Q 028402 92 RANCNLACLGV 102 (209)
Q Consensus 92 ~l~v~~a~~~~ 102 (209)
.|.|++++.+.
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 99999996543
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=126.26 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=69.2
Q ss_pred CCCCccEEEEcCCCC-CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hC--CCccCCeEE
Q 028402 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRA 93 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~--~~~l~g~~l 93 (209)
...+.++|||+|||+ ++||++|+++|++||+|++|.|+++ ++||||+|++.++|++||+ ++ ...|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345778999999999 9999999999999999999999875 4799999999999999996 44 456999999
Q ss_pred EEEEcccc
Q 028402 94 NCNLACLG 101 (209)
Q Consensus 94 ~v~~a~~~ 101 (209)
.|++++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999644
No 109
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=8.8e-20 Score=130.93 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=76.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCC---EEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~ 94 (209)
+....++|||+|||+++|+++|+++|+.||. |.+|+|++++. ++++|||||+|.+.++|++||++++..|+|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 4457789999999999999999999999998 89999999987 9999999999999999999999999999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988643
No 110
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=121.86 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
...++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||++++..|+|+.|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 456899999999999999999999999999987 66666666 9999999999999999999999999999998774
Q ss_pred cc
Q 028402 100 LG 101 (209)
Q Consensus 100 ~~ 101 (209)
.+
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 33
No 111
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=6.2e-20 Score=127.29 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcccc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~~ 101 (209)
++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.+ |++|++ +++..++|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999997 5999999999999998654
Q ss_pred C
Q 028402 102 V 102 (209)
Q Consensus 102 ~ 102 (209)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 112
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=9.9e-21 Score=137.61 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=78.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEE--------EEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l 88 (209)
++.+.++|||+|||+++++++|+++|++||.|.+ |+|+.++.+++++|||||+|.+.++|++||+ +++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567789999999999999999999999999999 9999999999999999999999999999997 699999
Q ss_pred CCeEEEEEEcccc
Q 028402 89 DGRRANCNLACLG 101 (209)
Q Consensus 89 ~g~~l~v~~a~~~ 101 (209)
.|+.|+|++++++
T Consensus 83 ~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 SGNPIKVSFATRR 95 (116)
Confidence 9999999998544
No 113
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=130.23 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||+|||+++|+++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999544333332378899999999999999999996 69999999999999
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
++..+.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 996543
No 114
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.2e-18 Score=136.33 Aligned_cols=85 Identities=28% Similarity=0.573 Sum_probs=76.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
...++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|.+||+.++..|+|+.|.|+++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999888999999999999996
Q ss_pred ccCCC
Q 028402 100 LGVQR 104 (209)
Q Consensus 100 ~~~~~ 104 (209)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 65443
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=127.00 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=71.4
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hC--CCccCCeEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRA 93 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~--~~~l~g~~l 93 (209)
....+.++|||+|||+++||++|+++|++||+|++|.|+++ ||||||+|++.++|++||+ ++ +..|.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34456789999999999999999999999999999999875 7899999999999999996 44 568999999
Q ss_pred EEEEccccCC
Q 028402 94 NCNLACLGVQ 103 (209)
Q Consensus 94 ~v~~a~~~~~ 103 (209)
.|++++.+..
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999965433
No 116
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=123.84 Aligned_cols=80 Identities=30% Similarity=0.512 Sum_probs=72.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
++...++|||+|||+++|+++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 7899999999999999995 69999999999999
Q ss_pred EccccCC
Q 028402 97 LACLGVQ 103 (209)
Q Consensus 97 ~a~~~~~ 103 (209)
+++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9965543
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=118.35 Aligned_cols=79 Identities=29% Similarity=0.435 Sum_probs=71.7
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-h-CCCccCCeE
Q 028402 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRR 92 (209)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~-~~~~l~g~~ 92 (209)
.+..+.+.++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++ + ++..++|++
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3445667889999999999999999999999999999999864 7899999999999999997 6 899999999
Q ss_pred EEEEEcc
Q 028402 93 ANCNLAC 99 (209)
Q Consensus 93 l~v~~a~ 99 (209)
|+|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999873
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=119.32 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=70.5
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
.......++|||+|||+++|+++|+++|++||.|++|.|+++ ||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 345567899999999999999999999999999999999743 99999999999999996 699999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++++
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9999544
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=124.86 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=74.2
Q ss_pred CCCCCccEEEEcCCCCCC------cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC
Q 028402 17 FGDTTYTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~ 89 (209)
..+...++|||+|||+++ |+++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|++||+ +++..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344567899999999999 889999999999999999988 4689999999999999999999997 6999999
Q ss_pred Ce-EEEEEEccc
Q 028402 90 GR-RANCNLACL 100 (209)
Q Consensus 90 g~-~l~v~~a~~ 100 (209)
|+ .|+|+++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 999999853
No 120
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=131.74 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCE----EEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEI----LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
...++|||+|||+++||++|+++|++||.| .+|.|+.++ +++++|||||+|.+.++|++||+.++..|.++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999975 689999995 899999999999999999999988889999999999
Q ss_pred EEccc
Q 028402 96 NLACL 100 (209)
Q Consensus 96 ~~a~~ 100 (209)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 121
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.7e-18 Score=135.50 Aligned_cols=86 Identities=34% Similarity=0.541 Sum_probs=79.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
+.+....++|||+|||+++|+++|+++|++||+|.+|.|++++.+++++|||||+|.+.++|++||+.++..|.|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 34556788999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
.++...
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 998543
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=122.74 Aligned_cols=78 Identities=23% Similarity=0.247 Sum_probs=68.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCC--ccCCeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP--VIDGRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~--~l~g~~l~ 94 (209)
...+.++|||+|||+++||++|+++|++||+|++|.+++ .||||||+|++.++|.+||+ +++. .|.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345778999999999999999999999999999999975 37899999999999999996 4555 48899999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999543
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=6e-19 Score=124.90 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=69.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.....++|||+|||.++|+++|+++|++||.|++|+|. +++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456899999999999999999999999999999997 357899999999999999996 69999999999999
Q ss_pred Eccc
Q 028402 97 LACL 100 (209)
Q Consensus 97 ~a~~ 100 (209)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8854
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=120.27 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=70.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC--CeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID--GRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~--g~~l~ 94 (209)
...+.++|||+|||+++|+++|+++|++||+|++|.+..+ +|||||+|.+.++|++||+ +++..|. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999999754 6899999999999999997 6999999 99999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++++
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999544
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=2.2e-18 Score=137.78 Aligned_cols=81 Identities=27% Similarity=0.367 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+ +++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999996 5999999999999987
Q ss_pred cc
Q 028402 99 CL 100 (209)
Q Consensus 99 ~~ 100 (209)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=121.93 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=69.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcccc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~~ 101 (209)
++|||+|||+++|+++|+++|++||+|++|.|+.+ ++|||||+|.+.++|++|++ +++..++|+.|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999877 68999999999999999997 6999999999999999654
Q ss_pred C
Q 028402 102 V 102 (209)
Q Consensus 102 ~ 102 (209)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=117.97 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=70.0
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
..+.+.++|||+|||+++|+++|+++|++||.|++|+|++ +||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456778999999999999999999999999999999974 399999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
+++...
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999544
No 128
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.3e-18 Score=120.00 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=68.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
.+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|++|++ +|+..|.|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999975 58999999999999999996 69999999999999883
No 129
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=127.33 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=73.5
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g 90 (209)
+.+..+.++|||+|||+++++++|+ ++|++||+|.+|.+.+ +++++|||||+|.+.++|++||+ +++..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445567899999999999999876 6999999999998753 57899999999999999999996 69999999
Q ss_pred eEEEEEEccccC
Q 028402 91 RRANCNLACLGV 102 (209)
Q Consensus 91 ~~l~v~~a~~~~ 102 (209)
+.|+|++++.+.
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999996543
No 130
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=120.43 Aligned_cols=77 Identities=17% Similarity=0.367 Sum_probs=68.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCC-EEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCC-CccCCeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAA-PVIDGRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~-~~l~g~~l~ 94 (209)
.....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++||+ +++ ..|+|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6666653 47899999999999999996 699 899999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++++
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999654
No 131
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=120.13 Aligned_cols=78 Identities=29% Similarity=0.483 Sum_probs=70.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||+|||+++|+++|+++|++||+|++|+|.++ +|||||+|.+.++|++||+ +++..|.|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999854 7899999999999999995 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++.+
T Consensus 85 ~a~~~ 89 (99)
T 2cpj_A 85 FACHS 89 (99)
T ss_dssp ESSCC
T ss_pred EcCCC
Confidence 99543
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=5.2e-18 Score=119.62 Aligned_cols=76 Identities=20% Similarity=0.471 Sum_probs=68.6
Q ss_pred CCCCCccEEEEcCCCC-CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 17 FGDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
......++|||+|||+ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|++||+ +++..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445778999999998 99999999999999999999983 7899999999999999997 699999999999
Q ss_pred EEEccc
Q 028402 95 CNLACL 100 (209)
Q Consensus 95 v~~a~~ 100 (209)
|++++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999854
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.8e-18 Score=118.49 Aligned_cols=76 Identities=28% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhC--CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~ 94 (209)
...+.++|||+|||+++|+++|+++|++| |.|.+|++. ++||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999999874 5699999999999999997 799999999999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++++
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9999644
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=124.83 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=69.2
Q ss_pred CCCCccEEEEcCCCCC-CcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-h--CCCccCCeEE
Q 028402 18 GDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--AAPVIDGRRA 93 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~--~~~~l~g~~l 93 (209)
+..+.++|||+|||++ +||++|+++|++||+|.+|.|++ ++|||||+|++.++|++||+ + +...|.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4556789999999998 99999999999999999999974 47899999999999999996 4 4567999999
Q ss_pred EEEEcccc
Q 028402 94 NCNLACLG 101 (209)
Q Consensus 94 ~v~~a~~~ 101 (209)
.|+++..+
T Consensus 95 ~V~~a~~~ 102 (112)
T 1x4f_A 95 KVDLSEKY 102 (112)
T ss_dssp EEEEECSC
T ss_pred EEEECccc
Confidence 99999544
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=4.4e-18 Score=122.40 Aligned_cols=73 Identities=27% Similarity=0.532 Sum_probs=67.6
Q ss_pred CCccEEEEcCCCCC-CcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
...++|||+|||++ +|+++|+++|++||+|++|.| +++||||+|.+.++|++||+ +++..|+|+.|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45589999999999 999999999999999999998 47899999999999999995 699999999999999
Q ss_pred ccc
Q 028402 98 ACL 100 (209)
Q Consensus 98 a~~ 100 (209)
++.
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 853
No 136
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=118.92 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=66.2
Q ss_pred ccEEEEcCCCCCC------cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe-EE
Q 028402 22 YTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR-RA 93 (209)
Q Consensus 22 ~~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~-~l 93 (209)
.++|||+|||.++ |+++|+++|++||+|.+|.|+ +.+++++|||||+|.+.++|++||+ +++..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 4589999999999999999999997 699999999 87
Q ss_pred EE
Q 028402 94 NC 95 (209)
Q Consensus 94 ~v 95 (209)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 137
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=9e-19 Score=127.31 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeE-----
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR----- 92 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~----- 92 (209)
....++|||+|||+++||++|+++|++||+|++|.|+.+ |||||+|++.++|++||+ +++.+|+|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 346789999999999999999999999999999999765 899999999999999997 6999999998
Q ss_pred EEEEEcc
Q 028402 93 ANCNLAC 99 (209)
Q Consensus 93 l~v~~a~ 99 (209)
|+|+.+.
T Consensus 86 i~v~~~~ 92 (115)
T 3beg_B 86 IRVKVDG 92 (115)
T ss_dssp CEEEECC
T ss_pred EEeccCC
Confidence 5665553
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.5e-18 Score=120.81 Aligned_cols=76 Identities=18% Similarity=0.445 Sum_probs=68.2
Q ss_pred CCCCccEEEEcCCCC-CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
+..+.++|||+|||+ ++|+++|+++|++||.|.+|.|. +|||||+|.+.++|++||+ +++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345778999999998 99999999999999999999984 6899999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
++++.+
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 999654
No 139
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=120.03 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=70.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
+....++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999997 677654 578999999999999999996 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++++
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99654
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.3e-18 Score=124.59 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
...++|||+|||+++|+++|+++|++|| +|..+.|..+ +++|||||+|.+.++|++||+ +++.+|+|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999 9999988643 478999999999999999996 699999999999999
Q ss_pred cc
Q 028402 98 AC 99 (209)
Q Consensus 98 a~ 99 (209)
+.
T Consensus 102 a~ 103 (111)
T 2jvr_A 102 DD 103 (111)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2.3e-18 Score=120.86 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=72.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeE
Q 028402 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~ 92 (209)
+..+.++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|++|++ +++..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 44677899999999999999999 9999999999999874 57789999999999999999996 6999999999
Q ss_pred EEEEEcccc
Q 028402 93 ANCNLACLG 101 (209)
Q Consensus 93 l~v~~a~~~ 101 (209)
|+|++++++
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999654
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=5.3e-18 Score=132.37 Aligned_cols=82 Identities=28% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
..+.++|||+|||+++++++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999997 699999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=7.8e-18 Score=121.85 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=73.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||+++|+++|+++|++||.|.+|.|+.+ +.++|||||+|.+.++|++||+ +++..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999876 4469999999999999999997 7999999999999999
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7543
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=120.18 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.+.+.++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988776 3468899999999999999999997 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
++.++
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 98543
No 145
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=4.4e-18 Score=118.23 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=62.8
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEc
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a 98 (209)
..+.++|||+|||+++||++|+++|++||+|++|+|+++ ++|||||+|.+.++|+++.. ....+.++.|.|+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEc
Confidence 457789999999999999999999999999999999875 78999999999999985322 233467999999998
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 6543
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=115.20 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=68.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||+|| ++|+++|+++|++||+|++|.|. +++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999984 468899999999999999995 69999999999999
Q ss_pred EccccC
Q 028402 97 LACLGV 102 (209)
Q Consensus 97 ~a~~~~ 102 (209)
++.++.
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 996543
No 147
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=118.26 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEcc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~ 99 (209)
.+.++|||+|||+++||++|+++|++||+|++|+|+.+ ++|||||+|.+.++|++|+.. ...+.+++|.|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 46789999999999999999999999999999999865 689999999999999875433 345689999999885
Q ss_pred cc
Q 028402 100 LG 101 (209)
Q Consensus 100 ~~ 101 (209)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 148
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.6e-18 Score=124.96 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=69.4
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECC----HHH----HHHHHH--h-CCCc
Q 028402 23 TKVFVGGL----AWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEA----AMKACV--D-AAPV 87 (209)
Q Consensus 23 ~~lfVgnL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~----~~~----a~~al~--~-~~~~ 87 (209)
++|||+|| |++++|++|+++|++||+|.+|.++.|++||+++|||||+|.+ .++ |.+|++ . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 323 788876 3 8999
Q ss_pred cCCeEEEEEEcc
Q 028402 88 IDGRRANCNLAC 99 (209)
Q Consensus 88 l~g~~l~v~~a~ 99 (209)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999874
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=1.2e-17 Score=126.42 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
......++|||+|||+++|+++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34567789999999999999999999999999999999876 58999999999999999997 6999999999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
+++.++
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999544
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.3e-17 Score=124.47 Aligned_cols=82 Identities=32% Similarity=0.490 Sum_probs=77.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
.....++|||+|||.++|+++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|.+|++ +++..++|+.|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred Ecc
Q 028402 97 LAC 99 (209)
Q Consensus 97 ~a~ 99 (209)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 984
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=2.9e-17 Score=130.32 Aligned_cols=83 Identities=22% Similarity=0.454 Sum_probs=77.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||.++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|.+|++ +++..|+|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
.++.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 6553
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.9e-17 Score=124.83 Aligned_cols=80 Identities=29% Similarity=0.409 Sum_probs=75.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEccc
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~ 100 (209)
.++|||+|||+++|+++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999999999999999999999999999997 699999999999999854
Q ss_pred c
Q 028402 101 G 101 (209)
Q Consensus 101 ~ 101 (209)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=2.4e-17 Score=125.70 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
..++|||+|||+++|+++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999999999999999999999999999996 69999999999999985
Q ss_pred cc
Q 028402 100 LG 101 (209)
Q Consensus 100 ~~ 101 (209)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=4.9e-18 Score=129.60 Aligned_cols=81 Identities=31% Similarity=0.602 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
..++|||+|||.++|+++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|+++++..|+|+.|+|+++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35689999999999999999999999999999999999999999999999999999999999888999999999999965
Q ss_pred c
Q 028402 101 G 101 (209)
Q Consensus 101 ~ 101 (209)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=120.42 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||+++|+++|+++|++||.|.+|.|+. +++||||+|.+.++|++||+ +++..|.|+.|.|+++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999999998864 47899999999999999996 6999999999999999
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 6543
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=4.2e-17 Score=125.25 Aligned_cols=80 Identities=16% Similarity=0.325 Sum_probs=70.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC--eEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g--~~l~ 94 (209)
......+|||+||++.+||++|+++|++||+|++|.|..++ ++|||||+|++.++|++|++ +++..|.+ ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34566789999999999999999999999999999987542 57899999999999999996 69999965 9999
Q ss_pred EEEcccc
Q 028402 95 CNLACLG 101 (209)
Q Consensus 95 v~~a~~~ 101 (209)
|++++++
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9999765
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=115.81 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEE-EEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
...++|||+|||+++|+++|+++|++||.|++| .|+.++.+++ |||+|.+.++|++||+ +++..|+|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 4888876543 9999999999999996 799999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9654
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=4.1e-17 Score=127.79 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 567899999999999999999999999999999999999899999999999999999999997 6999999999999999
Q ss_pred cccC
Q 028402 99 CLGV 102 (209)
Q Consensus 99 ~~~~ 102 (209)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=121.12 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=68.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCC---CCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
....++|||+|||+++||++|+++|++||+|. +.++.++.+ ++++|||||+|.+.++|++||+.. ..++|+.+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEe
Confidence 35678999999999999999999999999999 888888877 799999999999999999999743 2477887777
Q ss_pred EEc
Q 028402 96 NLA 98 (209)
Q Consensus 96 ~~a 98 (209)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 654
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=3.8e-18 Score=128.27 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=72.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEE--E---eecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAV--V---ITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~--i---~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~ 92 (209)
..+.++|||+|||+++|+++|+++|++||.|..|. + ++...+++++|||||+|.+.++|.+||+ +++..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999987641 1 1112368899999999999999999997 6999999999
Q ss_pred EEEEEccccCCC
Q 028402 93 ANCNLACLGVQR 104 (209)
Q Consensus 93 l~v~~a~~~~~~ 104 (209)
|.|++++....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999655433
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.9e-17 Score=113.52 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||++++|++|+++|++| +|.+|+|. +++|||||+|.+.++|++|++ +++..++|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999984 578999999999999999997 6999999999999998
Q ss_pred cc
Q 028402 99 CL 100 (209)
Q Consensus 99 ~~ 100 (209)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=6.9e-17 Score=123.75 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=75.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||+++|+++|+++|++||.|++|.++.++.+++++|||||+|.+.++|.+|++ +++..|+|++|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 346899999999999999999999999999999999999899999999999999999999997 6999999999999987
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=1.3e-16 Score=118.20 Aligned_cols=81 Identities=16% Similarity=0.346 Sum_probs=70.2
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccE-EEEEECCHHHHHHHHH-hCCCccCC--e
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACV-DAAPVIDG--R 91 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~-aFV~F~~~~~a~~al~-~~~~~l~g--~ 91 (209)
+....+..+|||+||++.+||++|+++|++||+|++|.|..+ .+|| |||+|.+.++|++|++ +++..|.+ +
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 334456778999999999999999999999999999988764 3678 9999999999999996 69999988 8
Q ss_pred EEEEEEcccc
Q 028402 92 RANCNLACLG 101 (209)
Q Consensus 92 ~l~v~~a~~~ 101 (209)
.|+|+++++.
T Consensus 97 ~LrI~~ak~~ 106 (130)
T 3zzy_A 97 TLRIDFSKLT 106 (130)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecCCC
Confidence 9999999755
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=2.4e-17 Score=125.79 Aligned_cols=79 Identities=30% Similarity=0.727 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+. .+.++|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999984 5789999999888754
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.8e-17 Score=117.55 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCCCCccEEEE--cCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc-----
Q 028402 17 FGDTTYTKVFV--GGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI----- 88 (209)
Q Consensus 17 ~~~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l----- 88 (209)
..+.+.++||| +||++++||++|+++|++||+|++|.|+.+ +|||||+|.+.++|++|++ +|+.+|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 789999999999999999999999988642 7899999999999999996 699988
Q ss_pred CCeEEEEEEcc
Q 028402 89 DGRRANCNLAC 99 (209)
Q Consensus 89 ~g~~l~v~~a~ 99 (209)
.++.|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68899999985
No 166
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=9e-17 Score=127.01 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=73.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEccc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~a~~ 100 (209)
..++|||+|||+++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++||+..+..++|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999987 48999999999999999999998766799999999998754
Q ss_pred c
Q 028402 101 G 101 (209)
Q Consensus 101 ~ 101 (209)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=5.8e-17 Score=111.25 Aligned_cols=71 Identities=20% Similarity=0.457 Sum_probs=65.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhC----C-------CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCcc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVI 88 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l 88 (209)
.+.++|||+|||+++|+++|+++|++| | +|.++++.++ +|||||+|.+.++|++|+.+++..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 467899999999999999999999999 8 9999998754 7899999999999999997799999
Q ss_pred CCeEEEEE
Q 028402 89 DGRRANCN 96 (209)
Q Consensus 89 ~g~~l~v~ 96 (209)
+|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999887
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=5.7e-17 Score=129.48 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=74.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
..++|||+|||+++|+++|+++|++||.|++|+|++|+ +.++|||||+|.+.++|++||+ +|+..|+|++|+|+++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 4579999999999999999996 69999999999999997
Q ss_pred ccCC
Q 028402 100 LGVQ 103 (209)
Q Consensus 100 ~~~~ 103 (209)
++.+
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 6543
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=9.1e-17 Score=127.43 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=73.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
...++|||+|||+++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 356899999999999999999999999999999999999999999999999999999999997 6999999999999876
Q ss_pred cc
Q 028402 99 CL 100 (209)
Q Consensus 99 ~~ 100 (209)
..
T Consensus 106 ~~ 107 (216)
T 2qfj_A 106 SN 107 (216)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=2.9e-16 Score=119.67 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=75.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC--eEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRAN 94 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g--~~l~ 94 (209)
.....++|||+|||.++++++|+++|++||.|+++.+++++.+++++|+|||+|.+.++|.+|++ +++..+.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999997 69999988 9999
Q ss_pred EEEc
Q 028402 95 CNLA 98 (209)
Q Consensus 95 v~~a 98 (209)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-16 Score=120.07 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcccc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~~~ 101 (209)
++|||+|||+++|+++|+++|++||+|.+|.|++++. ++++|||||+|.+.++|++|++ +++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999974 7799999999999999999994 6999999999999998543
No 172
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-16 Score=108.32 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=64.0
Q ss_pred CccE-EEEcCCCCCCcHHH----HHHHHhhC-CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 21 TYTK-VFVGGLAWETQKET----MEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 21 ~~~~-lfVgnLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
++.+ |||+|||+++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++ +++..|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 99999999999988 55899999 599998 33 999999999999999996 79999999999
Q ss_pred EEEEccccCC
Q 028402 94 NCNLACLGVQ 103 (209)
Q Consensus 94 ~v~~a~~~~~ 103 (209)
+|.+++.+.+
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999965544
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=4.9e-16 Score=114.37 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=66.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccE-EEEEECCHHHHHHHHH-hCCCccCC--eEEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACV-DAAPVIDG--RRANCN 96 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~-aFV~F~~~~~a~~al~-~~~~~l~g--~~l~v~ 96 (209)
....|||+||++.+|+++|+++|++||+|++|.|.. + .|| |||+|.+.++|++|++ +++..|.| +.|+|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 445688999999999999999999999999999965 2 276 9999999999999996 69999987 589999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++++
T Consensus 98 ~Ak~~ 102 (124)
T 2e5i_A 98 YARPT 102 (124)
T ss_dssp CCSCS
T ss_pred EecCC
Confidence 98655
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=5e-16 Score=117.96 Aligned_cols=79 Identities=25% Similarity=0.457 Sum_probs=73.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeE--EEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR--ANCN 96 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~--l~v~ 96 (209)
...++|||+|||.++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|.+|++ +++..+.|+. |+|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456899999999999999999999999999999999999899999999999999999999997 6999999975 7777
Q ss_pred Ec
Q 028402 97 LA 98 (209)
Q Consensus 97 ~a 98 (209)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=2.8e-16 Score=115.22 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=68.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
...+.++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 468999999999999999995 69999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
++..+
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99654
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=4.5e-16 Score=119.21 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCC--CcccEEEEEECCHHHHHHHHH-hCCCccC---CeEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG--RSKGYGFVTFREPEAAMKACV-DAAPVID---GRRAN 94 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg--~~~g~aFV~F~~~~~a~~al~-~~~~~l~---g~~l~ 94 (209)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.++ +++|||||+|.+.++|++|++ +++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999887 899999999999999999996 5776654 56677
Q ss_pred EEEccc
Q 028402 95 CNLACL 100 (209)
Q Consensus 95 v~~a~~ 100 (209)
+..+..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 776643
No 177
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=6.4e-16 Score=123.15 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=69.9
Q ss_pred CccEEEEcCCC-CCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 21 TYTKVFVGGLA-WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 21 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
+.++|||+||| +++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+ +|+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56799999999 89999999999999999999999876 37999999999999999996 7999999999999998
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 543
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=9.3e-16 Score=117.47 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC---CeEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID---GRRAN 94 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~---g~~l~ 94 (209)
....++|||+|||+++|+++|+++|++||.|++|.+++++ +++++|||||+|.+.++|.+|++ +++..+. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999996 58999999999999999999995 6887665 49999
Q ss_pred EEEc
Q 028402 95 CNLA 98 (209)
Q Consensus 95 v~~a 98 (209)
|+++
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=9e-16 Score=126.95 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=74.7
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHH----HHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe
Q 028402 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~ 91 (209)
.+..+.++|||+|||+++|+++|+ ++|++||.|++|+|++ +++++|||||+|.+.++|++||+ +++..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345678999999999999999977 8999999999999876 68899999999999999999995 699999999
Q ss_pred EEEEEEccccC
Q 028402 92 RANCNLACLGV 102 (209)
Q Consensus 92 ~l~v~~a~~~~ 102 (209)
.|+|++++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999986543
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=2.2e-15 Score=107.81 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCC-----CCcHHHHHHHHhhCCCEEEEEEeecCCC-CCcccEEEEEECCHHHHHHHHH-hCCCccCCeE
Q 028402 20 TTYTKVFVGGLAW-----ETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (209)
Q Consensus 20 ~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~t-g~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~ 92 (209)
.+++.|+|.||.. +-++++|+++|++||+|++|.|++++.+ ++++||+||+|.+.++|.+|++ +|+..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2378999999999999999999998764 6899999999999999999996 7999999999
Q ss_pred EEEEEccc
Q 028402 93 ANCNLACL 100 (209)
Q Consensus 93 l~v~~a~~ 100 (209)
|.|+++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.2e-15 Score=124.25 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCCccEEEEcCCCCCC---------cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc
Q 028402 19 DTTYTKVFVGGLAWET---------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l 88 (209)
+...++|||+||+.++ +|++|+++|++||+|++|+|+. ++|||||+|.+.++|++|++ +++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4577899999999998 7999999999999999999985 47999999999999999996 698888
Q ss_pred ------------CCeEEEEEEccccC
Q 028402 89 ------------DGRRANCNLACLGV 102 (209)
Q Consensus 89 ------------~g~~l~v~~a~~~~ 102 (209)
.|+.|.|++++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999996543
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.1e-15 Score=127.05 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=75.1
Q ss_pred CCCccEEEEcCCCCC-CcHHHHHHHHhhCCCEEEEEEeecCC-CCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Q 028402 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKA-TGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~-tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~ 96 (209)
....++|||+|||++ +|+++|+++|++||.|.+|+|+.++. |++++|||||+|.+.++|.+||.+++..|.|+.|.|.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVS 286 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEE
Confidence 346689999999999 99999999999999999999999876 6999999999999999999999669999999999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
++.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99643
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.5e-16 Score=122.45 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=73.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v~~ 97 (209)
+..+.++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++||++++..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4467789999999999999999999999998766 344555678899999999999999999998899999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8544
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.5e-15 Score=116.75 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
....++|||+|||.++|+++|+++|++||+|..+ ..+++++|||||+|.+.++|.+|++ +++..|+|+.|+|++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3467899999999999999999999999988776 4578999999999999999999997 699999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9654
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=3.9e-15 Score=120.02 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCC-CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 20 TTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 20 ~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
.+.++|||+|||+ ++|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+ +++..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999 99999999999999999999999875 7899999999999999996 799999999999999
Q ss_pred cccc
Q 028402 98 ACLG 101 (209)
Q Consensus 98 a~~~ 101 (209)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8644
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=8e-15 Score=121.33 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
..++|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++ +++..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999995 69999999999999986
Q ss_pred cc
Q 028402 100 LG 101 (209)
Q Consensus 100 ~~ 101 (209)
..
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=5.9e-15 Score=122.02 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=70.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeEEEE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANC 95 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~-g~~l~v 95 (209)
.....++|||+|||.++|+++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+ +++..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999998664 6899999999999999997 6999999 999999
Q ss_pred EEcc
Q 028402 96 NLAC 99 (209)
Q Consensus 96 ~~a~ 99 (209)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9984
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=4e-15 Score=123.19 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=77.6
Q ss_pred CCCCccEEEEcCCCCCC-cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEE
Q 028402 18 GDTTYTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v 95 (209)
.....++|||+|||+++ |+++|+++|+.||.|.+|+|+.++ +++++|+|||+|.+.++|.+|++ +++..|+|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999999987 79999999999999999999997 6999999999999
Q ss_pred EEccccCC
Q 028402 96 NLACLGVQ 103 (209)
Q Consensus 96 ~~a~~~~~ 103 (209)
+++.++..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99966543
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=7.1e-15 Score=122.13 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Q 028402 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (209)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~l~v 95 (209)
+..+...++|||+|||+++|+++|+++|+.||+|.+|+|++++.+ ++|||||+|.+.++|++||++++..|.|+.|.|
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 345567899999999999999999999999999999999998743 589999999999999999988999999999999
Q ss_pred EEcc
Q 028402 96 NLAC 99 (209)
Q Consensus 96 ~~a~ 99 (209)
.++.
T Consensus 113 ~~~~ 116 (292)
T 2ghp_A 113 SHLT 116 (292)
T ss_dssp EECC
T ss_pred EECC
Confidence 8764
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=115.33 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=70.3
Q ss_pred CccEEEEcCCCC-CCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEc
Q 028402 21 TYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (209)
Q Consensus 21 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a 98 (209)
..++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998874 7899999999999999997 7999999999999998
Q ss_pred ccc
Q 028402 99 CLG 101 (209)
Q Consensus 99 ~~~ 101 (209)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-14 Score=101.42 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCCCCccEEEEcCCCCCCc-----------HHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hC
Q 028402 17 FGDTTYTKVFVGGLAWETQ-----------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA 84 (209)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~ 84 (209)
....++++|+|.||....+ +++|+++|++||+|++|.| .++ .++|||||+|.+.++|++||+ ++
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3445678999999954432 6899999999999999966 554 379999999999999999995 69
Q ss_pred CCccCCeEEEEEEccccC
Q 028402 85 APVIDGRRANCNLACLGV 102 (209)
Q Consensus 85 ~~~l~g~~l~v~~a~~~~ 102 (209)
+..|+|+.|+|+++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999986543
No 192
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.4e-14 Score=98.40 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=63.4
Q ss_pred CCccEEEEcCCC-------CCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeE
Q 028402 20 TTYTKVFVGGLA-------WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (209)
Q Consensus 20 ~~~~~lfVgnLp-------~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~ 92 (209)
....+|-|.-.. .++||++|+++|++||+|++|.|+ ++++|||||+|++.++|++||+. ...+.++.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 345677776443 458999999999999999999997 35799999999999999999986 44578999
Q ss_pred EEEEEccccC
Q 028402 93 ANCNLACLGV 102 (209)
Q Consensus 93 l~v~~a~~~~ 102 (209)
|+|++++.+.
T Consensus 82 l~V~~a~~~~ 91 (100)
T 2d9o_A 82 LKISWLEGQP 91 (100)
T ss_dssp CEEECSSCCC
T ss_pred EEEEEccCCC
Confidence 9999985443
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=2.2e-14 Score=109.68 Aligned_cols=73 Identities=18% Similarity=0.416 Sum_probs=65.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhC----C-------CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccC
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~ 89 (209)
+.++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|++|+++++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 56899999999999999999999999 6 778877753 478999999999999999977999999
Q ss_pred CeEEEEEEcc
Q 028402 90 GRRANCNLAC 99 (209)
Q Consensus 90 g~~l~v~~a~ 99 (209)
|+.|.|.++.
T Consensus 77 g~~i~v~~~~ 86 (172)
T 2g4b_A 77 GQSLKIRRPH 86 (172)
T ss_dssp TEECEEECCS
T ss_pred CceeeecCCc
Confidence 9999998764
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=9.4e-15 Score=116.36 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCE--EEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe----E
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEI--LEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR----R 92 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i--~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~----~ 92 (209)
.+.++|||+|||+++||++|+++|++||.| ++|+++.++ ++.+|+|||+|.+.++|.+||+ +|+.+|.++ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346789999999999999999999999999 899998775 5567999999999999999996 699999887 4
Q ss_pred EEEEEc
Q 028402 93 ANCNLA 98 (209)
Q Consensus 93 l~v~~a 98 (209)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666554
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=2.5e-14 Score=111.73 Aligned_cols=74 Identities=18% Similarity=0.404 Sum_probs=65.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhC----C-------CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccC
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~ 89 (209)
..++|||+|||+++||++|+++|++| | .|.++.+ ++++|||||+|.+.++|++||++++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 6666665 34589999999999999999977999999
Q ss_pred CeEEEEEEccc
Q 028402 90 GRRANCNLACL 100 (209)
Q Consensus 90 g~~l~v~~a~~ 100 (209)
|+.|.|.++..
T Consensus 77 g~~i~v~~~~~ 87 (198)
T 2yh0_A 77 GQSLKIRRPHD 87 (198)
T ss_dssp TEEEEEECCCC
T ss_pred CceEEEeCCCC
Confidence 99999998754
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=4.1e-14 Score=101.15 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=69.6
Q ss_pred CCccEEEEcCC--CCCCc--------HHHHHHHHhhCCCEEEEEEeecCCC--CCcccEEEEEECCHHHHHHHHH-hCCC
Q 028402 20 TTYTKVFVGGL--AWETQ--------KETMEKYFEQFGEILEAVVITDKAT--GRSKGYGFVTFREPEAAMKACV-DAAP 86 (209)
Q Consensus 20 ~~~~~lfVgnL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~t--g~~~g~aFV~F~~~~~a~~al~-~~~~ 86 (209)
.+++.|.|.|+ +.++. +++|++.|++||+|++|.|++++.+ ++++|++||+|.+.++|.+|++ +|+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46778899988 33443 4789999999999999999998765 4689999999999999999995 7999
Q ss_pred ccCCeEEEEEEccc
Q 028402 87 VIDGRRANCNLACL 100 (209)
Q Consensus 87 ~l~g~~l~v~~a~~ 100 (209)
.++||.|+|++...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998743
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=3.2e-14 Score=116.88 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=69.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEE
Q 028402 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (209)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~ 97 (209)
....++|||+|||+++|+++|+++|++||.|.+|.|.++ +|||||+|.+.++|.+||+ +++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356689999999999999999999999999999999653 7899999999999999997 699999999999998
Q ss_pred ccc
Q 028402 98 ACL 100 (209)
Q Consensus 98 a~~ 100 (209)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=4.9e-14 Score=115.78 Aligned_cols=80 Identities=29% Similarity=0.304 Sum_probs=71.7
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-h-CCCccC---CeEEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVID---GRRANC 95 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~-~~~~l~---g~~l~v 95 (209)
+.++|||+|||.++|+++|+++|++||.|++|.|+.+ .+++++|||||+|.+.++|.+||+ + ++..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4579999999999999999999999999999999999 589999999999999999999996 4 455554 999999
Q ss_pred EEcccc
Q 028402 96 NLACLG 101 (209)
Q Consensus 96 ~~a~~~ 101 (209)
+++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998654
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=5.2e-14 Score=113.41 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCN 96 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~-g~~l~v~ 96 (209)
.+.++|||+|||+++|+++|+++|++|| +|++|+|+.+ .+|+|||+|.+.++|.+||+ +++..|. |+.|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999653 37899999999999999997 6999999 9999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99653
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=7.9e-15 Score=104.67 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=63.2
Q ss_pred EcCCCCCCcHHHHHHHH------------hhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEE
Q 028402 27 VGGLAWETQKETMEKYF------------EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (209)
Q Consensus 27 VgnLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l 93 (209)
+.+|++++++++|+++| ++||+|++|.|++++. ++++|||||+|.+.++|.+|++ +|+..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888877766 9999999999998864 7899999999999999999996 69999999999
Q ss_pred EEEEc
Q 028402 94 NCNLA 98 (209)
Q Consensus 94 ~v~~a 98 (209)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=111.30 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCC-CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeEEEEE
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCN 96 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~-g~~l~v~ 96 (209)
.+.++|||+|||.++|+++|+++|++|| .|++|+|+.+ .+|+|||+|.+.++|.+|++ +++..++ |+.|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999999764 37899999999999999997 6999999 9999999
Q ss_pred Ecccc
Q 028402 97 LACLG 101 (209)
Q Consensus 97 ~a~~~ 101 (209)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98643
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.8e-13 Score=99.79 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=69.4
Q ss_pred CccEEEEcCCCC--CC---cHHHHHHHHhhCCCEEEEEEeecCC----CCCcccEEEEEECCHHHHHHHHH-hCCCccCC
Q 028402 21 TYTKVFVGGLAW--ET---QKETMEKYFEQFGEILEAVVITDKA----TGRSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (209)
Q Consensus 21 ~~~~lfVgnLp~--~~---te~~L~~~F~~~G~i~~v~i~~~~~----tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g 90 (209)
+++.|+|.|+-. ++ .++||++.|++||+|.+|.|++++. +++++|++||+|.+.++|.+|++ +|+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578899999832 22 3689999999999999999999865 46788999999999999999996 69999999
Q ss_pred eEEEEEEccc
Q 028402 91 RRANCNLACL 100 (209)
Q Consensus 91 ~~l~v~~a~~ 100 (209)
|.|.|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998743
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=4.3e-13 Score=114.43 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=63.8
Q ss_pred CCCCCccEEEEcC--CCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC---C
Q 028402 17 FGDTTYTKVFVGG--LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID---G 90 (209)
Q Consensus 17 ~~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~---g 90 (209)
..+.++++|||+| |+..+||++|+++|++||+|++|.+.. +||||||+|++.++|++||+ +|+.++. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456788999999 578999999999999999999987753 47999999999999999996 6998862 4
Q ss_pred e--EEEEEEc
Q 028402 91 R--RANCNLA 98 (209)
Q Consensus 91 ~--~l~v~~a 98 (209)
+ .|.|.++
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 4 4666665
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=1.4e-11 Score=89.17 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=62.8
Q ss_pred CccEEEEcCCCCCC----------cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC
Q 028402 21 TYTKVFVGGLAWET----------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (209)
Q Consensus 21 ~~~~lfVgnLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~ 89 (209)
+++.|.+.|+=... .++||++.|++||.|++|.|.++. .+||+||+|.+.++|.+|++ +|+..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45677777763211 146899999999999999997653 58999999999999999996 7999999
Q ss_pred CeEEEEEEccc
Q 028402 90 GRRANCNLACL 100 (209)
Q Consensus 90 g~~l~v~~a~~ 100 (209)
|+.|.|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999753
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.3e-11 Score=81.61 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=60.5
Q ss_pred CccEEEEcCCCC----CCcH----HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeE
Q 028402 21 TYTKVFVGGLAW----ETQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (209)
Q Consensus 21 ~~~~lfVgnLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~ 92 (209)
+..+|+|.-++. +.-+ .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||++++..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 345777776652 2333 5789999999999999999873 89999999999999999999999999
Q ss_pred EEEEEccc
Q 028402 93 ANCNLACL 100 (209)
Q Consensus 93 l~v~~a~~ 100 (209)
|+|+++++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999854
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=7.4e-11 Score=85.99 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=65.1
Q ss_pred CCccEEEEcCCCCC-CcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECC-HHHHHHHHH-h--CCCccCCeEEE
Q 028402 20 TTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACV-D--AAPVIDGRRAN 94 (209)
Q Consensus 20 ~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~-~~~a~~al~-~--~~~~l~g~~l~ 94 (209)
.+.+.|+|+||+.+ +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|.+|++ + .+.+|++..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 56789999999999 99999999999999999999998864 59999999 889999996 4 46779999888
Q ss_pred EEEcc
Q 028402 95 CNLAC 99 (209)
Q Consensus 95 v~~a~ 99 (209)
+++..
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=3.1e-10 Score=78.56 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=60.5
Q ss_pred CccEEEEcCCCCC-----C-cH---HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCe
Q 028402 21 TYTKVFVGGLAWE-----T-QK---ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (209)
Q Consensus 21 ~~~~lfVgnLp~~-----~-te---~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~ 91 (209)
+..+|+|.-++.+ + .+ .+|.+.|+.||+|..++|..|+ +||+|.+.++|.+||++++..++||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4468999877643 2 22 4689999999999999999884 9999999999999999999999999
Q ss_pred EEEEEEcc
Q 028402 92 RANCNLAC 99 (209)
Q Consensus 92 ~l~v~~a~ 99 (209)
.|+|++..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998763
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=3.5e-09 Score=84.57 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=59.0
Q ss_pred CcHHHHHHHHhhCCCEEEEEEeecC----CCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEEEcc
Q 028402 34 TQKETMEKYFEQFGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (209)
Q Consensus 34 ~te~~L~~~F~~~G~i~~v~i~~~~----~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~~a~ 99 (209)
-.+++|++.|++||+|.++.|.++. .+++++|++||+|.+.++|.+|++ +++..++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4568899999999999999998654 455899999999999999999996 69999999999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.4e-06 Score=61.58 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=63.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhC-----CCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeEEE
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQF-----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRAN 94 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al-~~~~~~l~g~~l~ 94 (209)
..++|=+-+||..++++.|+.+.+.+ |.|+.|.+..|. +-|+|+|.|...|-+|. .+++.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 45678888999999999999999999 999999998874 37999999999988877 7899999999998
Q ss_pred EEE
Q 028402 95 CNL 97 (209)
Q Consensus 95 v~~ 97 (209)
|--
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2e-05 Score=55.16 Aligned_cols=73 Identities=29% Similarity=0.342 Sum_probs=62.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhh-----CCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeE
Q 028402 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ-----FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (209)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~-----~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~~ 92 (209)
+..-.++|.|.|||++++++.|+-+|+. =|+|++++... .-|+|+|.+.+.|++.|+...+.|.+..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 3445679999999999999999999975 26888887753 3789999999999999988889999999
Q ss_pred EEEEEc
Q 028402 93 ANCNLA 98 (209)
Q Consensus 93 l~v~~a 98 (209)
|.|.-.
T Consensus 76 LsV~P~ 81 (104)
T 2dhx_A 76 LSLRPA 81 (104)
T ss_dssp CEEEEC
T ss_pred EEEEcC
Confidence 998764
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00065 Score=48.79 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCC-eEEEEEEc
Q 028402 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCNLA 98 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g-~~l~v~~a 98 (209)
...+-|-|-+.|++. .+.|.+.|++||+|.+..... ...+-.|.|.+..+|++||..|+..|++ -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346778888999884 677888999999999987622 2348899999999999999999999985 55666653
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.38 E-value=0.00088 Score=45.91 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=53.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCC--cccEEEEEECCHHHHHHHHHh-CCCccC
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVD-AAPVID 89 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~--~~g~aFV~F~~~~~a~~al~~-~~~~l~ 89 (209)
++|.|.+||+++||+++.+.++...++........+.+.+ .-.-|+|.|.+.+++..-.+. +++.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5899999999999999999999888877777666554333 235789999999888887754 877753
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.00073 Score=47.29 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=60.4
Q ss_pred CCccEEEEcCCCCCC-cH----HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeEE
Q 028402 20 TTYTKVFVGGLAWET-QK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRA 93 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~-te----~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al-~~~~~~l~g~~l 93 (209)
.-.++|+|.||+.++ +. +.++++|..|+++.....++. -.-..|.|.+.++|.+|- ++++..+.|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 345789999998865 22 567899999999888777654 224679999999999887 469999999999
Q ss_pred EEEEccc
Q 028402 94 NCNLACL 100 (209)
Q Consensus 94 ~v~~a~~ 100 (209)
+|-++.+
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999863
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.00074 Score=46.66 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=44.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~ 82 (209)
.+-++| ++|.++...||.++|+.||. ..|+++.|. -|||.|.+.+.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 344555 99999999999999999994 467777764 79999999999999886
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.0011 Score=46.01 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 028402 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~ 82 (209)
-++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+.+.|..|+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 4455 9999999999999999999 4577787764 79999999999999986
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.66 E-value=0.00087 Score=59.01 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=42.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~ 83 (209)
.++|+|. .+..+++.+|.++|++||.|.++.+-.++ .-||.|||.+.+++.++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 5789998 79999999999999999999999776542 36999999999999888754
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.19 E-value=0.0035 Score=43.32 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=48.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCC--cccEEEEEECCHHHHHHHHHh-CCCccC
Q 028402 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVD-AAPVID 89 (209)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~--~~g~aFV~F~~~~~a~~al~~-~~~~l~ 89 (209)
.+-+|.|..||+.+||+++.+.++..-++........+.+.+ .-.-|+|.|.+.+++..-.+. ++..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 356899999999999999998887765543333322222221 225689999999998887764 776643
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.09 E-value=0.0098 Score=43.29 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=53.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEE-EEEeec--------CCCCC-----cccEEEEEECCHHHHHHHHHhCCCcc
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITD--------KATGR-----SKGYGFVTFREPEAAMKACVDAAPVI 88 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~--------~~tg~-----~~g~aFV~F~~~~~a~~al~~~~~~l 88 (209)
..|.|=+.|++ ....+-+.|++||.|.+ ..+.++ +.+.+ ...+-.|+|++..+|.+||..|+..|
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 45666678766 45667788999999877 222110 00011 24577899999999999999999999
Q ss_pred CCeEEEEEEcc
Q 028402 89 DGRRANCNLAC 99 (209)
Q Consensus 89 ~g~~l~v~~a~ 99 (209)
+|..|-|....
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99888777653
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.98 E-value=0.026 Score=41.63 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=26.0
Q ss_pred EEEEeecCCCCCcccEEEEEECCHHHHHHHHHh
Q 028402 51 EAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 51 ~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~ 83 (209)
.++|+++.. +++||+||+|.+.++|++|++.
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHh
Confidence 467777753 6899999999999999999953
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.21 E-value=0.073 Score=38.92 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=34.0
Q ss_pred CCcccEEEEEECCHHHHHHHHH-h-CCCccCCeEEEEEEccc
Q 028402 61 GRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRRANCNLACL 100 (209)
Q Consensus 61 g~~~g~aFV~F~~~~~a~~al~-~-~~~~l~g~~l~v~~a~~ 100 (209)
.+.+|+++|+|.+.++|++|++ + ++..++| .+.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4678999999999999999995 6 8999999 888887743
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.39 E-value=1.6 Score=38.70 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=42.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~ 82 (209)
...++|+ +|..+...+|.++|+.||. .+|+++.+ ..|||.|.+.+.|..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHH
Confidence 4466666 9999999999999999995 46666544 279999999999999885
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=72.20 E-value=0.77 Score=31.79 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCccEEEEcCCCCCCcHHH
Q 028402 20 TTYTKVFVGGLAWETQKET 38 (209)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~ 38 (209)
...++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999864
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=64.43 E-value=23 Score=22.11 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=38.0
Q ss_pred EEEEcC-CCCCCcHHHHHHHHhhCC-----CEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeEEEEE
Q 028402 24 KVFVGG-LAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (209)
Q Consensus 24 ~lfVgn-Lp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~-~~~~~l~g~~l~v~ 96 (209)
+++|.. --..++..+|..++..-+ .|-.|+|..+ |.||+-... .+..+++ ++...+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 455531 123466667777775433 5677777543 889988654 4566664 57788999998887
Q ss_pred Ec
Q 028402 97 LA 98 (209)
Q Consensus 97 ~a 98 (209)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 66
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.62 E-value=52 Score=24.66 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=38.7
Q ss_pred EEEEcCCCCC---------CcHHHHHHHH--hhCCCEEEEEEeecCCCCCcccEEEEEEC-CHHHHHHHHHh
Q 028402 24 KVFVGGLAWE---------TQKETMEKYF--EQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVD 83 (209)
Q Consensus 24 ~lfVgnLp~~---------~te~~L~~~F--~~~G~i~~v~i~~~~~tg~~~g~aFV~F~-~~~~a~~al~~ 83 (209)
.+.|-|++.+ .+..+|++.| +.|..++ |+.+.++ .-+.|++.|+|. +..-...|+++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 4566677751 3457899977 9998765 4444443 237899999997 55666777754
No 225
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.74 E-value=50 Score=22.47 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=35.8
Q ss_pred CCCCCCcHHHHHHHH-hhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHh
Q 028402 29 GLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (209)
Q Consensus 29 nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~ 83 (209)
.++..++-+||..-. ..||.-.++....+ -..|-..+.++..+||++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIel 70 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVEL 70 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHH
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHH
Confidence 356778888876665 57898878777622 356888999999999975
No 226
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=37.37 E-value=48 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.6
Q ss_pred CEEEEEEeecCCCCCcccEEEEEECC
Q 028402 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 48 ~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
+|++|+|..-...++-+++|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887766668889999999975
No 227
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=34.78 E-value=19 Score=17.60 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=8.2
Q ss_pred ccceeEEEEE
Q 028402 195 MLFYKYLKIK 204 (209)
Q Consensus 195 ~~~~~~~~~~ 204 (209)
||.|.|.||.
T Consensus 2 wcvyayvrir 11 (26)
T 2jni_A 2 WCVYAYVRIR 11 (26)
T ss_dssp CEEEEEEEET
T ss_pred eEEEEEEEEE
Confidence 7889999873
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=32.13 E-value=82 Score=18.75 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=41.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCC
Q 028402 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (209)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~ 86 (209)
..++.|.++.-.-=...|++.+.+ -.|..+.+... .+-+.|+|.+.++..++|+..+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 356788888777667889999988 88888887543 34567787766667777765443
No 229
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=32.03 E-value=64 Score=21.90 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.4
Q ss_pred CEEEEEEeecCCCCCcccEEEEEECC
Q 028402 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 48 ~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
+|++|+|..-...++-+++|=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887765568889999999975
No 230
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.71 E-value=30 Score=27.66 Aligned_cols=33 Identities=12% Similarity=0.336 Sum_probs=26.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEee
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVIT 56 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~ 56 (209)
.-+.|+|||..++...|.+++.. ..+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999987 6666655543
No 231
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.68 E-value=70 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.1
Q ss_pred CEEEEEEeecCCCCCcccEEEEEECC
Q 028402 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (209)
Q Consensus 48 ~i~~v~i~~~~~tg~~~g~aFV~F~~ 73 (209)
+|++|+|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57888887666668889999999975
No 232
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=29.31 E-value=60 Score=27.10 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh
Q 028402 24 KVFVGGLAWETQKETMEKYFEQ 45 (209)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~ 45 (209)
-..|+|||.+++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888864
No 233
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.44 E-value=9.5 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=15.5
Q ss_pred HHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEEC
Q 028402 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (209)
Q Consensus 37 ~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~ 72 (209)
+|+.++|...|.|+. ..+ .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkw---fn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKW---FNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEE---EET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEE---EEC-----CCCeeEEeeC
Confidence 455666666665443 332 4789999865
No 234
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.34 E-value=17 Score=29.30 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=27.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhCCCEEEEEEeec
Q 028402 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD 57 (209)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~ 57 (209)
.-+.|+|||..++...|.+++..-..+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999976556666655543
No 235
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=25.43 E-value=82 Score=19.78 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=8.5
Q ss_pred ccEEEEEECCH
Q 028402 64 KGYGFVTFREP 74 (209)
Q Consensus 64 ~g~aFV~F~~~ 74 (209)
+.-|+|.|+|.
T Consensus 41 ~~~ClV~FeD~ 51 (69)
T 2xk0_A 41 SDQYLIRFDDQ 51 (69)
T ss_dssp SSCEEEEETTC
T ss_pred CceEEEEecCC
Confidence 44799999874
No 236
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=25.41 E-value=1.2e+02 Score=22.25 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=27.7
Q ss_pred CcHHHHHHHHhhCCCEE---EEEEeecCCCCCcccEEEE
Q 028402 34 TQKETMEKYFEQFGEIL---EAVVITDKATGRSKGYGFV 69 (209)
Q Consensus 34 ~te~~L~~~F~~~G~i~---~v~i~~~~~tg~~~g~aFV 69 (209)
.|+++|+++-.+.|++. +..+..|.++|+.+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58999999999999873 3455556447999988875
No 237
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.65 E-value=1.3e+02 Score=25.25 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=39.9
Q ss_pred EEEEcCCCCCC----cHHHHHHHHhhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCe
Q 028402 24 KVFVGGLAWET----QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (209)
Q Consensus 24 ~lfVgnLp~~~----te~~L~~~F~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~~~~~~l~g~ 91 (209)
--+||||..-. ....+.++..+||.|-.+.+.. --+|...+.+.++.++..+...+.++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 34688876432 2356777788999998887632 34566789999998886655555444
No 238
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.41 E-value=81 Score=28.54 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=38.5
Q ss_pred CCCCCCcHHHHHHHH----hhCCCEEEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 028402 29 GLAWETQKETMEKYF----EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (209)
Q Consensus 29 nLp~~~te~~L~~~F----~~~G~i~~v~i~~~~~tg~~~g~aFV~F~~~~~a~~al~ 82 (209)
..+.+.+--||..+| ..+|-|+++.|..-+. -+.+..+++.|.+.+++.+++.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~ 406 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLR 406 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHH
Confidence 344455555788888 2688999998766542 3345678899999999998884
No 239
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.27 E-value=17 Score=30.42 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=9.6
Q ss_pred CCCCCcHHHHHHHHhh
Q 028402 30 LAWETQKETMEKYFEQ 45 (209)
Q Consensus 30 Lp~~~te~~L~~~F~~ 45 (209)
|..++++++|+++...
T Consensus 225 ~~~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 225 VDATVTLELLDELTHE 240 (358)
T ss_dssp SCSSCCHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHH
Confidence 3345677777766543
No 240
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.65 E-value=22 Score=28.13 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=25.7
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCCEEEEEEee
Q 028402 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVIT 56 (209)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~ 56 (209)
..|+|||..++...|..+++....+..+.++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 38999999999999999998766666665544
No 241
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.79 E-value=58 Score=16.08 Aligned_cols=12 Identities=17% Similarity=0.692 Sum_probs=10.4
Q ss_pred cHHHHHHHHhhC
Q 028402 35 QKETMEKYFEQF 46 (209)
Q Consensus 35 te~~L~~~F~~~ 46 (209)
.|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999999887
Done!