Query 028403
Match_columns 209
No_of_seqs 192 out of 1142
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_N Ribosomal protein L15; 100.0 1.8E-63 6E-68 438.0 3.0 197 1-208 3-199 (257)
2 3v2d_P 50S ribosomal protein L 100.0 4.3E-50 1.5E-54 329.4 9.6 124 74-208 1-127 (150)
3 3r8s_L 50S ribosomal protein L 100.0 6.8E-50 2.3E-54 325.7 6.7 123 75-208 1-123 (143)
4 2zjr_I 50S ribosomal protein L 100.0 4.4E-46 1.5E-50 306.3 5.0 122 74-208 1-122 (156)
5 1vq8_L 50S ribosomal protein L 99.9 2.8E-28 9.5E-33 201.9 3.1 108 85-208 3-123 (165)
6 2zkr_l 60S ribosomal protein L 99.9 4.2E-26 1.4E-30 185.2 0.9 109 85-207 3-125 (148)
7 3j21_L 50S ribosomal protein L 99.3 1.5E-12 5E-17 106.1 3.1 106 87-208 5-126 (147)
8 4a17_K L29, RPL27A, 60S riboso 99.2 8.5E-13 2.9E-17 107.8 -2.7 114 86-207 4-126 (149)
9 3j21_P 50S ribosomal protein L 99.1 1.2E-11 3.9E-16 97.9 -0.8 56 127-207 26-81 (120)
10 1vq8_O 50S ribosomal protein L 99.0 3.4E-11 1.2E-15 94.6 -0.8 57 126-207 22-78 (116)
11 3jyw_O 60S ribosomal protein L 98.2 3.4E-08 1.2E-12 78.3 -3.2 55 128-207 22-82 (121)
12 2zkr_o 60S ribosomal protein L 98.2 4.2E-08 1.4E-12 83.1 -3.0 57 128-207 41-101 (188)
13 3o58_Y 60S ribosomal protein L 97.4 8.8E-05 3E-09 60.7 3.6 108 87-207 5-126 (149)
14 3izc_R 60S ribosomal protein R 97.4 1.6E-05 5.4E-10 67.3 -1.2 56 127-207 41-102 (186)
15 3iz5_R 60S ribosomal protein L 97.4 1.5E-05 5.1E-10 67.6 -1.3 56 127-207 41-101 (188)
16 4a17_N RPL18, 60S ribosomal pr 97.3 1.2E-05 4.1E-10 67.8 -3.3 56 127-207 42-102 (181)
17 3iz5_O 60S ribosomal protein L 96.5 0.001 3.5E-08 54.1 2.1 106 87-207 5-121 (144)
18 4a17_K L29, RPL27A, 60S riboso 55.2 1.1 3.9E-05 36.1 -2.0 37 101-137 14-50 (149)
19 2bpa_3 Protein (subunit of bac 50.8 20 0.0007 22.6 3.7 20 105-128 17-36 (37)
No 1
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.8e-63 Score=438.02 Aligned_cols=197 Identities=66% Similarity=1.029 Sum_probs=122.1
Q ss_pred CCccccccccCCCCCCCCccccccccCCCCCCCccccceecccCCCCceEEEecccccccceeccCCCCCCCeeecCCCC
Q 028403 1 MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLG 80 (209)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rm~L~nL~ 80 (209)
||+++++| |+|+++||||||+++|.+++|+..| ++++++++ |++|||++|++++. ..++.++|+||||+
T Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~m~L~~L~ 71 (257)
T 3bbo_N 3 AASLIPVS--SLPSLASPFKGNVKTLVAKPCLCPC--LKIQRTKL--RVSVVNKAASAYNV-----KSSGENVFRLDNLG 71 (257)
T ss_dssp -------------------------------------------------------------------------CCCSSSC
T ss_pred cccccccc--cCCCCCCcccccccccccccccccc--hhhhccCc--cceeEeeccccccc-----ccCCCCceecccCc
Confidence 89999999 6678999999999999999999888 66677655 99999999997553 33778899999999
Q ss_pred CCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeEechhhh
Q 028403 81 PQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE 160 (209)
Q Consensus 81 p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~ 160 (209)
|+|||++++||+|||+|||+|||||||||||++|+|+.+++|||||||||||||||+|||+|.++.++++|.+|||++|+
T Consensus 72 p~~Gs~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~ 151 (257)
T 3bbo_N 72 PQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIE 151 (257)
T ss_dssp CCCCCCSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCS
T ss_pred CCCCCccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCCCcchhhcccccccCCccccCcceeeeEeHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999669999766557799999999998
Q ss_pred hccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403 161 AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI 208 (209)
Q Consensus 161 ~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi 208 (209)
..+|+++++||+++|+++|+|+..+++..++|||||+|+++.+|.|+.
T Consensus 152 ~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLtkkLtVkA 199 (257)
T 3bbo_N 152 NAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKA 199 (257)
T ss_dssp CSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCCSSCCCCS
T ss_pred hcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccCCCeEEEE
Confidence 534889999999999999999764322357899999999998888763
No 2
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=100.00 E-value=4.3e-50 Score=329.42 Aligned_cols=124 Identities=40% Similarity=0.614 Sum_probs=113.5
Q ss_pred eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCC-cccCCCCCeEEecccccCCCCCC--CCCCCe
Q 028403 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK-GFEGGQMPLYRRIPKLRGIAGGM--HAGLPK 150 (209)
Q Consensus 74 m~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~-GFEGGQtPLyRRlPK~RGF~ng~--~~~~~~ 150 (209)
|+||||+|+|||+|++||||||+|||+|||||||||||+||+|+.+++ ||||||||||||||| |||+|.+ +.++++
T Consensus 1 m~L~~L~p~~Gs~k~~kRvGRG~gSG~GkT~GrG~KGqkaRsg~~~~~~gFEGGQ~Pl~rRlPK-~GF~~~~~~~~~~~~ 79 (150)
T 3v2d_P 1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK-RGMQGQVPGEIKRPR 79 (150)
T ss_dssp CCGGGCCCCTTSSCCCCCCSSCTTTSCCTTTTCCSSSTTTSTTCCSCTTTCCTTSCCTTTTSCC-CSCCCCTTCCCCCCC
T ss_pred CccccCCCCCCCCcCCccccCCCCCCCCccCCCCCCcCcCCCCCCCCCccccCCCCccEEEcCc-cCccCccccccccce
Confidence 899999999999999999999999999999999999999999988999 999999999999999 6999821 246889
Q ss_pred eEeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403 151 YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI 208 (209)
Q Consensus 151 y~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi 208 (209)
|.+|||++|+. |+ + +||+++|+++|||+. .++|||||+||++ ++.|+.
T Consensus 80 y~~VNL~~L~~--~~-G-~I~~~~L~~~glv~~-----~~~VKvLg~G~l~-~v~V~a 127 (150)
T 3v2d_P 80 YQGVNLKDLAR--FE-G-EVTPELLVRAGLLKK-----GYRLKILGEGEAK-PLKVVA 127 (150)
T ss_dssp EEEEEHHHHTT--CC-S-EECHHHHHTTTSSCT-----TCEEEEECSSCCC-SCEECB
T ss_pred EEEEEHHHHhh--cC-C-cccHHHHHHCCCccc-----ccceEEEecCCcc-cEEEEE
Confidence 99999999985 77 5 999999999999975 4699999999999 887763
No 3
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=100.00 E-value=6.8e-50 Score=325.69 Aligned_cols=123 Identities=46% Similarity=0.652 Sum_probs=113.6
Q ss_pred ecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeE
Q 028403 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPV 154 (209)
Q Consensus 75 ~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~V 154 (209)
+||||+|+|||++++||+|||+|||+|||||||||||+||+|+++++||||||||||||||| +||+|. ++++|.+|
T Consensus 1 ~L~~L~p~~Gs~k~~kRvGRG~gsG~Gkt~GrG~KGqkaRsG~~~~~gFEGGQ~Pl~rRlPK-~GF~~~---~~~~y~~V 76 (143)
T 3r8s_L 1 RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK-FGFTSR---KAAITAEI 76 (143)
T ss_dssp CCSSCCCCTTSSCCCCCCSSCSTTSSCSGGGSCSSSTTTSTTCCCCTTCCTTSCCHHHHSCC-CCCCCS---TGGGEEEC
T ss_pred CcccCCCCCCCCcCcccccCcCCCCCCCCCCCCCCCCcCCCCCCCCCccccCCCccEEEccc-cccCCc---ccceeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999 699974 47899999
Q ss_pred echhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403 155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI 208 (209)
Q Consensus 155 NL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi 208 (209)
||++|+. |+ +++||+++|+++|+|+.. .++|||||+||++.++.|+.
T Consensus 77 NL~~L~~--~~-~~~I~~~~L~~~glv~~~----~~~VKVLg~Gel~~~l~V~a 123 (143)
T 3r8s_L 77 RLSDLAK--VE-GGVVDLNTLKAANIIGIQ----IEFAKVILAGEVTTPVTVRG 123 (143)
T ss_dssp CSSSSSC--SS-SSEEEHHHHGGGTSSCTT----CCEEECCCCSCCCSCCEEES
T ss_pred EHHHhhh--cc-CCeecHHHHHHcCccccC----CCceEEeeCCcccccEEEEE
Confidence 9999974 65 489999999999999864 57899999999999998874
No 4
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=100.00 E-value=4.4e-46 Score=306.31 Aligned_cols=122 Identities=36% Similarity=0.572 Sum_probs=109.2
Q ss_pred eecCCCCCCCCCCccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEe
Q 028403 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVP 153 (209)
Q Consensus 74 m~L~nL~p~pGark~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~ 153 (209)
|+||||+|+|||++++||+|||+| |+|||||||||||+||+|+.+++||||||||||||||| +||+| ++++|.+
T Consensus 1 m~L~~L~p~~gs~~~~kRvGRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfEGGQ~Pl~rrlPK-~GF~n----~~~~~~~ 74 (156)
T 2zjr_I 1 MKLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPK-RGFNN----VGTTYEV 74 (156)
T ss_dssp ---CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCC-CCCCC----CCCCCCE
T ss_pred CccccCCCCCCCccCCcccCCCCC-CCCCcCCCCCCCCCCCCCCCCCCceEcCcCCCeEecCC-CCCcC----CceEEEe
Confidence 899999999999999999999999 99999999999999999988899999999999999999 69986 4678999
Q ss_pred EechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403 154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI 208 (209)
Q Consensus 154 VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi 208 (209)
|||++|+. |.+++ ||+++|+++++|+.. .++|||||+|+++.+|.|+.
T Consensus 75 VNL~~L~~--l~~~~-i~~~~L~~~gli~~~----~~~vKVLG~G~l~~~l~Vka 122 (156)
T 2zjr_I 75 VKLSQLQD--LEDTT-FDRDTLEAYRLVRRK----NRPVKLLASGEISRAVTVHV 122 (156)
T ss_dssp ECHHHHTT--SCCCC-CCTTTTHHHHHCCCC----SSCCEECCCCCCCCCCCCCC
T ss_pred echhHHHh--hhcCC-cCHHHHHhCCcEecc----ccceEEeeCCccCcCeEEEE
Confidence 99999974 66666 999999999999873 57899999999998887753
No 5
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.94 E-value=2.8e-28 Score=201.86 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=90.7
Q ss_pred CCccccccccCCCCC-CCCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccccCCCCCCCCCCCeeEeEechhhhhcc
Q 028403 85 SRKRGKRKGRGIAAG-QGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAG 163 (209)
Q Consensus 85 ark~rKRvGRG~gSG-~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r 163 (209)
++++++|+|||+||| +|||+|||||||++|+|+..+.+| |||+ ||| +||+|.+ ..+.+|.+|||++|+. .
T Consensus 3 ~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~-----pl~k-lPK-~GF~~~~-~~r~~~~~VNL~~L~~-l 73 (165)
T 1vq8_L 3 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFH-----NHEP-LGK-SGFKRPQ-KVQEEAATIDVREIDE-N 73 (165)
T ss_dssp CHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCT-----TSCC-SCC-CCCCCCG-GGCCCEEEEEHHHHHH-T
T ss_pred ccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCc-----eeeE-CCC-CCCccCC-cccceeeeEEHHHHHH-H
Confidence 456788999999999 999999999999999998888888 9999 999 6999743 2246899999999974 2
Q ss_pred C-----------CCCC-ccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEEec
Q 028403 164 F-----------LEGD-EVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHI 208 (209)
Q Consensus 164 ~-----------~~~~-~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~Ihi 208 (209)
+ +++. +||+++|+++|+|+ ++|||||+|+++.+|.|+.
T Consensus 74 ~~~~~~~g~~~~~~~~~vId~~~L~~~gli~-------~~vKVLG~G~l~k~l~Vka 123 (165)
T 1vq8_L 74 VTLLAADDVAEVEDGGFRVDVRDVVEEADDA-------DYVKVLGAGQVRHELTLIA 123 (165)
T ss_dssp TGGGTTSCCCC-----CEEEGGGTCTTCTTS-------SEEEEECCSCCCSCCEEEE
T ss_pred HHHhhhccccccCCCCeEECHHHHHHCCccC-------CceEEecCCccCCCEEEEE
Confidence 2 4453 89999999999993 4799999999999888763
No 6
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.91 E-value=4.2e-26 Score=185.15 Aligned_cols=109 Identities=25% Similarity=0.162 Sum_probs=75.7
Q ss_pred CCccccccccCCCCCCCCccccCCCCCCC-CCCCCCCCcccCCCCCeEEe--------cccccCCCCCCCCCCC-ee-Ee
Q 028403 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKS-RSGPGVRKGFEGGQMPLYRR--------IPKLRGIAGGMHAGLP-KY-VP 153 (209)
Q Consensus 85 ark~rKRvGRG~gSG~GKTsGRGhKGQka-RsG~~~r~GFEGGQtPLyRR--------lPK~RGF~ng~~~~~~-~y-~~ 153 (209)
++++++|++||+ +|||+||+||++ |+|+ +||||||||+|++ ||| |||+|.+ ..+. +| .+
T Consensus 3 ~r~~k~rk~RG~-----~t~G~G~~gq~r~~~Gg---~G~aGgq~h~~~~~~k~~p~~lpK-~GF~~~~-~~~~~~~~~~ 72 (148)
T 2zkr_l 3 SRLRKTRKLRGH-----VSHGHGRIGKHRKHPGG---RGNAGGMHHHRINFDKYHPGYFGK-VGMKHYH-LKRNQSFCPT 72 (148)
T ss_dssp ---CHHHHTTTT-----SCSSCCSCSCC--CCSC---SSSTTTTTTTCSSCTTTC--------------------CCCCE
T ss_pred CccCCcccCCCC-----cCcCCCCCCCCCCCCCC---CCcccCCCCCEEeccccCCCcCCC-CCcCCCC-ccccceecce
Confidence 567788999996 999999999999 8874 7999999999999 999 6999742 2123 45 89
Q ss_pred EechhhhhccCCCCCccCHHH-H-HHCCCCCCCCCCCCCCeEEEcCCeeee-eEEEe
Q 028403 154 VNLKDIEAAGFLEGDEVSLET-L-KKKGLINPSGRERKLPLKVQDTIIVVL-FVCFH 207 (209)
Q Consensus 154 VNL~~L~~~r~~~~~~It~e~-L-~~~glI~~~~~~~~~~VKILg~Gelt~-~l~Ih 207 (209)
|||++|+. .++++.++|++. | .++++|+.. ....|||||+|||+. +|.|.
T Consensus 73 VNl~~L~~-l~~~~~~~~~~~~l~~~~~vI~~~---~~~~vKVLG~Gel~k~~l~Vk 125 (148)
T 2zkr_l 73 VNLDKPWT-LVSEQTRVNAAKNKTGVAPIIDVV---RSGYYKVLGKGKLPKQPVIVK 125 (148)
T ss_dssp EETHHHHH-HTTTTTSSCTTTTEEEHHHHSTTC---SSSCCEEECCSCCCSSCCEEE
T ss_pred EEHHHHHh-hhhcCcEEehhhhccccCCeEecc---ccCceEEecCCccccCCEEEE
Confidence 99999985 346667788775 4 578888753 135699999999998 88875
No 7
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.26 E-value=1.5e-12 Score=106.10 Aligned_cols=106 Identities=23% Similarity=0.295 Sum_probs=72.4
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCC---CCC------eEE--ecccccCCCCCCCCCCCeeEeEe
Q 028403 87 KRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGG---QMP------LYR--RIPKLRGIAGGMHAGLPKYVPVN 155 (209)
Q Consensus 87 k~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGG---QtP------LyR--RlPK~RGF~ng~~~~~~~y~~VN 155 (209)
.++.|.=|| --|||.|+.||...+|..--.|..|| |-- -|. +||| +||+|.+ .++++|.+||
T Consensus 5 ~~k~rk~rG-----~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK-~GF~n~~-~~~~~~~~VN 77 (147)
T 3j21_L 5 RKKVRKLRG-----SHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK-RGFSRPP-EVQREVRVVN 77 (147)
T ss_dssp HHHHTTTTC-----CSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCC-CSCCCCT-TTCCCCCEEE
T ss_pred ccccccccC-----CCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCc-CCCCccc-cccceeEEEE
Confidence 345566677 36789999888755432224688888 421 222 7999 6998743 2367899999
Q ss_pred chhhhhccCCCCCccCHHHHHHCCCCCCCCCC-----CCCCeEEEcCCeeeeeEEEec
Q 028403 156 LKDIEAAGFLEGDEVSLETLKKKGLINPSGRE-----RKLPLKVQDTIIVVLFVCFHI 208 (209)
Q Consensus 156 L~~L~~~r~~~~~~It~e~L~~~glI~~~~~~-----~~~~VKILg~Gelt~~l~Ihi 208 (209)
|++|+. .++ +|.++++|+...+. .+++|||||+|||+.++.|+.
T Consensus 78 L~~L~~-l~~--------~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~~~v~Vka 126 (147)
T 3j21_L 78 LKFIDE-HLD--------ELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTRPLVIKA 126 (147)
T ss_dssp HHHHHH-TTT--------TTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCSSCEEEEE
T ss_pred HHHHHH-HHH--------HHHHcCcccccCCcceecccccCcEEecCCccCcCEEEEE
Confidence 999985 232 38899999753100 112399999999999988863
No 8
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=99.17 E-value=8.5e-13 Score=107.81 Aligned_cols=114 Identities=20% Similarity=0.096 Sum_probs=73.7
Q ss_pred CccccccccCCC---CC-CCCccccCCCCCCCCCCCC--CCCcccCCCCCeEEecccccCCCCCCCC-CCCeeEeEechh
Q 028403 86 RKRGKRKGRGIA---AG-QGNSCGFGMRGQKSRSGPG--VRKGFEGGQMPLYRRIPKLRGIAGGMHA-GLPKYVPVNLKD 158 (209)
Q Consensus 86 rk~rKRvGRG~g---SG-~GKTsGRGhKGQkaRsG~~--~r~GFEGGQtPLyRRlPK~RGF~ng~~~-~~~~y~~VNL~~ 158 (209)
+.++.|.-||.- -| .||+.++||+|++.++|+. .+.+|+.. +|. .++| +||++.+.. ++..|++|||++
T Consensus 4 r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky-~p~--~fGK-~Gfr~~h~~~n~~~~~~VNLdk 79 (149)
T 4a17_K 4 HLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKW-HPG--YYGK-LGMRTFHLKKNPLHCPVVNIDK 79 (149)
T ss_dssp GGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHH-STT--CSSC-CSCCCSSCCCGGGCCCEEEGGG
T ss_pred cccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeecc-CCC--cCCC-CCccCCCccCCcceeeEEEHHH
Confidence 345556777632 22 4677777788888888765 45578777 898 6999 699874322 234678999999
Q ss_pred hhhccCCCCCccCHHHHHH-CCCCCCCCCCCCCCeEEEcCCee-eeeEEEe
Q 028403 159 IEAAGFLEGDEVSLETLKK-KGLINPSGRERKLPLKVQDTIIV-VLFVCFH 207 (209)
Q Consensus 159 L~~~r~~~~~~It~e~L~~-~glI~~~~~~~~~~VKILg~Gel-t~~l~Ih 207 (209)
|+. .+++...++.+.+.+ +.+|+.. ....|||||+|+| +.++.|.
T Consensus 80 L~~-l~~~~~~~~~~~~~~~~~vId~~---~~g~~KvLG~G~l~~~~v~v~ 126 (149)
T 4a17_K 80 LWS-LVSDATRQKYAEDKKKVPVIDVT---KAGFFKVLGKGRLPNQPVVVK 126 (149)
T ss_dssp HHH-HSCHHHHHHHHHCCSSCCEEEHH---HHTCCEEECCSCCCSSCCEEE
T ss_pred HHH-HhhhhcchhhhhhcCCceEEEec---cCCeEEEecCCccCCCCEEEE
Confidence 974 244443444444221 2255411 1236999999999 8787775
No 9
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.06 E-value=1.2e-11 Score=97.85 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=46.7
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEEE
Q 028403 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCF 206 (209)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~I 206 (209)
.||||||+|| |||++ +++|.+|||++|+. .++++++||. ++||||+|+++.++.|
T Consensus 26 ~~Pl~rrlpK-rgF~~-----r~~~~~VnL~~L~~-~~~~g~~i~~------------------~vKVLg~G~l~~kl~V 80 (120)
T 3j21_P 26 GVKIWKDVAW-RLERP-----RRQRAEVNVSKINR-YANDGEMIVV------------------PGSVLGAGKLEKKVIV 80 (120)
T ss_dssp CCSHHHHHHH-HHHSC-----TTSSEEEEHHHHTT-SSCTTCEEEE------------------EEEEECSSCCCSCCEE
T ss_pred CCcHHHHHHh-hcCCC-----CCcceeEEHHHHHH-HHhcCCEEEE------------------EEEEcCCCeecCCEEE
Confidence 5899999999 79975 56899999999984 4566777763 5899999999988877
Q ss_pred e
Q 028403 207 H 207 (209)
Q Consensus 207 h 207 (209)
+
T Consensus 81 ~ 81 (120)
T 3j21_P 81 A 81 (120)
T ss_dssp E
T ss_pred E
Confidence 5
No 10
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=98.98 E-value=3.4e-11 Score=94.55 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeeeeEE
Q 028403 126 GQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVC 205 (209)
Q Consensus 126 GQtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~~l~ 205 (209)
-|||||||+|| || | .++++|.+|||++|+. .++++++| +| +|||||+|+++.++.
T Consensus 22 ~~~Pl~rRlPK-rG--~---~~~~~~~~VnL~~L~~-~~~~g~~i---------lv---------~vKVLg~G~l~k~l~ 76 (116)
T 1vq8_O 22 SGGAVWGDVAE-RL--E---KPRRTHAEVNLGRIER-YAQEDETV---------VV---------PGKVLGSGVLQKDVT 76 (116)
T ss_dssp SSCHHHHHHHH-HH--T---SCTTTSEEEEHHHHHH-HCCTTSEE---------EE---------EEEEECCSCCCSCCE
T ss_pred cCCCHhhhccc-CC--C---CCCceeeeEeHHHHHH-HccCCCEE---------EE---------EEEEeeCCeecCCEE
Confidence 48999999999 69 2 3467899999999984 36677766 22 599999999998887
Q ss_pred Ee
Q 028403 206 FH 207 (209)
Q Consensus 206 Ih 207 (209)
|+
T Consensus 77 V~ 78 (116)
T 1vq8_O 77 VA 78 (116)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 11
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=98.25 E-value=3.4e-08 Score=78.33 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=41.7
Q ss_pred CCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCC----CCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeee--
Q 028403 128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL----EGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVV-- 201 (209)
Q Consensus 128 tPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~----~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt-- 201 (209)
-|||||+|| |||.+ +.+|++|||++|+. .++ ++++| + .++||||+|+++
T Consensus 22 apl~rrvpK-RgF~s-----r~~~~~VnLs~L~~-~~~~~g~~g~~v----------v--------v~~KVlg~G~l~~~ 76 (121)
T 3jyw_O 22 APFNKVVLK-ALFLS-----KINRPPVSVSRIAR-ALKQEGAANKTV----------V--------VVGTVTDDARIFEF 76 (121)
T ss_dssp CHHHHHHHH-TTTSC-----STTSCCBCHHHHHH-HTTTTSCSSSEE----------E--------ESSCBCCCSCCCSS
T ss_pred ChHHHHHHH-HHCCC-----CCccceEEHHHHHH-HhhccCCCCCEE----------E--------EEEEEcCCceEccc
Confidence 499999999 79974 56899999999974 233 34433 1 357999999997
Q ss_pred eeEEEe
Q 028403 202 LFVCFH 207 (209)
Q Consensus 202 ~~l~Ih 207 (209)
.++.|.
T Consensus 77 ~kl~V~ 82 (121)
T 3jyw_O 77 PKTTVA 82 (121)
T ss_dssp SCCCEE
T ss_pred CCEEEE
Confidence 577664
No 12
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.24 E-value=4.2e-08 Score=83.08 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=42.6
Q ss_pred CCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCC--CCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeeee--e
Q 028403 128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL--EGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVL--F 203 (209)
Q Consensus 128 tPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~--~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt~--~ 203 (209)
-|||||||| |||+| +++|.+|||++|+. |. ++++.+ ++ .+.+||||+|||+. +
T Consensus 41 apl~rrlpK-RgF~s-----r~~y~~VNLs~L~~--~~~~~g~~~~--------ii-------v~~~KVLg~GeL~kvpk 97 (188)
T 2zkr_o 41 STFNQVVLK-RLFMS-----RTNRPPLSLSRMIR--KMKLPGRENK--------TA-------VVVGTVTDDVRILEVPK 97 (188)
T ss_dssp CHHHHHHHH-HHHSC-----TTTSCEEEHHHHHS--CSSSCCSTTS--------EE-------EEEEEEECSSCCCCCSS
T ss_pred CCHHHHHHH-hhCCC-----ccceeeeeHHHHHH--HhhhcCCCCc--------EE-------EeecEEECCceecccCC
Confidence 499999999 79975 56899999999974 43 233321 11 13579999999998 7
Q ss_pred EEEe
Q 028403 204 VCFH 207 (209)
Q Consensus 204 l~Ih 207 (209)
+.|.
T Consensus 98 LtV~ 101 (188)
T 2zkr_o 98 LKVC 101 (188)
T ss_dssp CCEE
T ss_pred eEEE
Confidence 7764
No 13
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=97.41 E-value=8.8e-05 Score=60.66 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=56.1
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCC----CCeEE----ecccccCCCCCCCCCC-Ce-eEeEec
Q 028403 87 KRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQ----MPLYR----RIPKLRGIAGGMHAGL-PK-YVPVNL 156 (209)
Q Consensus 87 k~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQ----tPLyR----RlPK~RGF~ng~~~~~-~~-y~~VNL 156 (209)
.++.|.=||. -|+|.|..|+..-. .--.|--||+ +=|.. -+.| .||... +..+ .. ..+|||
T Consensus 5 ~kKtrK~RG~-----~s~G~G~~gkhR~h--~GGrG~AGg~~Hh~~~~~Ky~p~~fGK-~G~r~~-h~~~n~~~~~~INl 75 (149)
T 3o58_Y 5 FTKTRKHRGH-----VSAGKGRIGKHRKH--PGGRGMAGGEHHHRINMDKYHPGYFGK-VGMRYF-HKQQAHFWKPVLNL 75 (149)
T ss_dssp SGGGSSSSSC-----SSSBTTBSCCSSCS--SSSSSSCCCSSSSCCCSCCCTTSSSSC-CSCCCC-CCCCCCCCCCSTTT
T ss_pred ccccccccCC-----CccCCCCCCCCCCC--CCCCccccCccceeEEEeeeCCCccCC-CCcccC-cccccccccceEEH
Confidence 3444555663 56777776653211 1124556665 11111 1457 488753 3322 23 468999
Q ss_pred hhhhhccCCCCCccCHHHH---HHCCCCCCCCCCCCCCeEEEcCCee-eeeEEEe
Q 028403 157 KDIEAAGFLEGDEVSLETL---KKKGLINPSGRERKLPLKVQDTIIV-VLFVCFH 207 (209)
Q Consensus 157 ~~L~~~r~~~~~~It~e~L---~~~glI~~~~~~~~~~VKILg~Gel-t~~l~Ih 207 (209)
++|+. .+++.......+- -++-+|... ....|||||+|+| +.++.|.
T Consensus 76 dkL~~-lv~~~~~~~~a~~~~~~~~~vID~~---~~g~vKVLG~G~l~~~~v~Vk 126 (149)
T 3o58_Y 76 DKLWT-LIPEDKRDQYLKSASKETAPVIDTL---AAGYGKILGKGRIPNVPVIVK 126 (149)
T ss_dssp THHHH-CSSCCSCSSCTTSSTTSSCCBCCCS---SSCSCCCCCCCCCCSCCEEEC
T ss_pred HHHHH-HhHHHHhhhhhhhccCCCCcEEEEe---cccceEEEcCCccCCCCEEEE
Confidence 99974 2333322222110 012233321 2346999999999 8888775
No 14
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=97.39 E-value=1.6e-05 Score=67.34 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=41.9
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCC----CCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeee-
Q 028403 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL----EGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVV- 201 (209)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~----~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt- 201 (209)
.-|||++||| |+|.+ +.+|++|||++|+.. ++ ++++| + .++||||+|+|+
T Consensus 41 ~apf~r~V~K-RLf~s-----r~~r~~VnLsrI~r~-~k~~g~~g~~v---------V---------v~gKVLg~G~L~~ 95 (186)
T 3izc_R 41 DAPFNKVVLK-ALFLS-----KINRPPVSVSRIARA-LKQEGAANKTV---------V---------VVGTVTDDARIFE 95 (186)
T ss_dssp CCHHHHHHHH-HHHSC-----TTTCCEEEHHHHHHH-TTTTSSSSCEE---------E---------ESSEEECCCCSSC
T ss_pred CChHHHHHHH-HHhCC-----CcccCcccHHHHHHH-hhccCCCCCEE---------E---------EEeEEecCceEcc
Confidence 3589999999 79963 568999999999852 33 23333 1 268999999997
Q ss_pred -eeEEEe
Q 028403 202 -LFVCFH 207 (209)
Q Consensus 202 -~~l~Ih 207 (209)
.++.|.
T Consensus 96 v~kl~V~ 102 (186)
T 3izc_R 96 FPKTTVA 102 (186)
T ss_dssp CCCEEEE
T ss_pred cCCEEEE
Confidence 577664
No 15
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=97.38 E-value=1.5e-05 Score=67.56 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=41.5
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCCC---CCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeee--
Q 028403 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVV-- 201 (209)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~~---~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt-- 201 (209)
.-|||++||| |+|.+ +.+|++|||++|+. .+++ +++| | .++||||+|+|+
T Consensus 41 ~apf~r~V~K-RLf~s-----r~~r~pVnLsrL~r-~~k~~e~gk~V----------V--------v~gKVLg~G~L~~v 95 (188)
T 3iz5_R 41 KSKFNAVILK-RLFMS-----KTNRPPLSMRRLSN-FMKGKEEKNIA----------V--------VVGTITDDMRIQEV 95 (188)
T ss_dssp SCHHHHHHHH-HHHSC-----TTTCCEEEHHHHHT-TSCSSSTTCEE----------E--------EEEEEECCCCSSCC
T ss_pred CChHHHHHHH-HHcCC-----ccccCcccHHHHHH-HhccccCCCEE----------E--------EEEEEcCCceEccc
Confidence 3599999999 79963 56899999999974 2333 4444 1 368999999996
Q ss_pred eeEEEe
Q 028403 202 LFVCFH 207 (209)
Q Consensus 202 ~~l~Ih 207 (209)
.++.|.
T Consensus 96 ~kl~V~ 101 (188)
T 3iz5_R 96 PAMKVT 101 (188)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 446553
No 16
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=97.26 E-value=1.2e-05 Score=67.82 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=41.3
Q ss_pred CCCeEEecccccCCCCCCCCCCCeeEeEechhhhhccCCC---CCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCeee--
Q 028403 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVV-- 201 (209)
Q Consensus 127 QtPLyRRlPK~RGF~ng~~~~~~~y~~VNL~~L~~~r~~~---~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gelt-- 201 (209)
.-|||+++|| |+|.+ +.+|++|||++|+. .+++ +++| | .++||||+|+|+
T Consensus 42 ~apf~r~V~K-RLf~s-----r~nr~pVnLsrI~r-~~~~~e~gk~v----------V--------v~gKVLg~G~l~~v 96 (181)
T 4a17_N 42 DSKFNQNILK-RLSSS-----RLNKFPLSLSRIVK-NLNETNKEQVI----------V--------STSTVTNDERLLTV 96 (181)
T ss_dssp CCHHHHHHHH-HHSCC-----GGGSCCEEHHHHHH-SCCHHHHHSEE----------E--------ESSEEECCTTCCSC
T ss_pred CChHHHHHHH-HHcCC-----ccccCcccHHHHHH-HhccccCCCEE----------E--------EEEEEcCCceEccc
Confidence 4699999999 79963 56899999999985 2332 3333 1 367999999997
Q ss_pred eeEEEe
Q 028403 202 LFVCFH 207 (209)
Q Consensus 202 ~~l~Ih 207 (209)
.++.|.
T Consensus 97 ~kl~V~ 102 (181)
T 4a17_N 97 PKLTVC 102 (181)
T ss_dssp CCCEEE
T ss_pred CCEEEE
Confidence 456554
No 17
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=96.48 E-value=0.001 Score=54.08 Aligned_cols=106 Identities=18% Similarity=0.085 Sum_probs=54.9
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCeEEe--------cccccCCCCCCCC-CCCeeEeEech
Q 028403 87 KRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRR--------IPKLRGIAGGMHA-GLPKYVPVNLK 157 (209)
Q Consensus 87 k~rKRvGRG~gSG~GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRR--------lPK~RGF~ng~~~-~~~~y~~VNL~ 157 (209)
.++.|.=||. -|+|.|+.|+..-. .--.|--||+-=-+.. +-| .||+..+.. +.....+|||+
T Consensus 5 ~kKtrK~RG~-----~s~G~G~~gkhR~h--~GGrG~AGg~~Hh~~~~~Ky~p~~fGK-~G~r~~h~~~n~~~~~~VNl~ 76 (144)
T 3iz5_O 5 FKKNRKKRGH-----VSAGHGRIGKHRKH--PGGRGNAGGMHHHRILFDKYHPGYFGK-VGMRYFHRLSNRFHCPAVNVE 76 (144)
T ss_dssp SSSSCCSSSC-----STTTTSCCCSSCSC--CSCCCSTTTSCCCEEEEETHHHHHTST-TCTTSCCCSSCTTSCEEEGGG
T ss_pred ccccccccCC-----CccCCCCCCCCCCC--CCCCccccCccceeEEEEeeCCCccCC-CCccCCCccccccccceEEHH
Confidence 3344555762 57788877754211 1124667777332222 447 488753222 12235799999
Q ss_pred hhhhccCCCCCccCHHHHHHCCCCCCCCCCCCCCeEEEcCCee--eeeEEEe
Q 028403 158 DIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIV--VLFVCFH 207 (209)
Q Consensus 158 ~L~~~r~~~~~~It~e~L~~~glI~~~~~~~~~~VKILg~Gel--t~~l~Ih 207 (209)
+|+. .+++ ++.+-+. ++-+|.-. ....+||||+|+| +.++.|.
T Consensus 77 kL~~-lv~~-~~a~~~~--~~~vIDl~---~~G~~KvLG~G~l~~~~~v~Vk 121 (144)
T 3iz5_O 77 RLWS-MVPA-EAGAGAG--KAPVIDVT---QFGYTKVLGKGMLPPERPIVVK 121 (144)
T ss_dssp TSTT-CTTS-SEEEEEC--CSCCCSCC---EEEESEECHHHHSTTCTTCCCE
T ss_pred HHHH-HhHH-hhhccCC--CceEEEee---ccCcEEEeCCCccCCccCEEEE
Confidence 9974 2222 2210000 11122211 0124999999999 7777664
No 18
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=55.25 E-value=1.1 Score=36.08 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCccccCCCCCCCCCCCCCCCcccCCCCCeEEecccc
Q 028403 101 GNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 137 (209)
Q Consensus 101 GKTsGRGhKGQkaRsG~~~r~GFEGGQtPLyRRlPK~ 137 (209)
..|||+|+.||...+|..-..|..|||...+..+.|+
T Consensus 14 ~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky 50 (149)
T 4a17_K 14 HVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKW 50 (149)
T ss_dssp SSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHH
T ss_pred CCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeecc
Confidence 4689999999887655434578999999888888885
No 19
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=50.77 E-value=20 Score=22.56 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=14.5
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCC
Q 028403 105 GFGMRGQKSRSGPGVRKGFEGGQM 128 (209)
Q Consensus 105 GRGhKGQkaRsG~~~r~GFEGGQt 128 (209)
=||.||. |.| .|++|-|||.
T Consensus 17 lrgtkgk--rkg--arlwyvggqq 36 (37)
T 2bpa_3 17 LRGTKGK--RKG--ARLWYVGGQQ 36 (37)
T ss_dssp BCCSCCS--SCC--SCCCCSSSCC
T ss_pred ccccccc--ccc--ceEEEecccc
Confidence 4677774 343 6899999994
Done!