RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028403
(209 letters)
>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed.
Length = 146
Score = 139 bits (353), Expect = 2e-42
Identities = 64/120 (53%), Positives = 75/120 (62%), Gaps = 10/120 (8%)
Query: 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
+LN L P PGSRK KR GRGI +G G + G G +GQK+RSG GVR GFEGGQMPLYRR+
Sbjct: 2 KLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRL 61
Query: 135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKV 194
PK RG +Y VNL D+ F EG EV+LE LK GLI R+ +KV
Sbjct: 62 PK-RGFTNIFRK---EYAVVNLGDLNK--FEEGTEVTLEALKAAGLI----RKNIKGVKV 111
>gnl|CDD|233260 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle.
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 145
Score = 117 bits (295), Expect = 1e-33
Identities = 57/109 (52%), Positives = 71/109 (65%), Gaps = 6/109 (5%)
Query: 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
+LN L P G++KR KR GRGI +G G + G G +GQK+RSG VR+GFEGGQMPLYRR+
Sbjct: 1 KLNELKPAKGAKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRL 60
Query: 135 PKLRGIAGGMHAGLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
PK G + K Y VNL + F G+ V+LETLK+KGLI
Sbjct: 61 PKR----GFSNKRFKKEYAEVNLGKLAKL-FPNGEVVTLETLKEKGLIT 104
>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal
structure and biogenesis].
Length = 152
Score = 97.3 bits (243), Expect = 6e-26
Identities = 56/109 (51%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
Query: 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPG-VRKGFEGGQMPLYRR 133
RLN+L P GS+K KR GRGI +G G + G G +GQK+RSG VR GFEGGQMPLYRR
Sbjct: 2 RLNDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRR 61
Query: 134 IPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
+PK RG +Y VNL + A EG+EV+L +LK G+I
Sbjct: 62 LPK-RGFTNSKFK-KVEYAVVNLGKL-AELLPEGEEVTLASLKAAGVIR 107
>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15. This family
includes eukaryotic L18 as well as prokaryotic L15.
Length = 122
Score = 60.3 bits (147), Expect = 4e-12
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 100 QGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDI 159
G + G G +G + R+G FEGGQ+PLYRR+ K RG + PVNL +
Sbjct: 3 IGKTRGRGRKGGRGRAGGQKHH-FEGGQVPLYRRLGK-RGFR-KLFKSRKNRPPVNLSKL 59
Query: 160 EAAGFLEGDEVSLETLKKKGLI 181
+ +G+EV ETL G +
Sbjct: 60 DRKMLKDGEEVDGETLVVVGTV 81
>gnl|CDD|146808 pfam04361, DUF494, Protein of unknown function (DUF494). Members
of this family of uncharacterized proteins are often
named Smg.
Length = 155
Score = 32.2 bits (74), Expect = 0.10
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 22/51 (43%)
Query: 159 IEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKVQDTIIVVLFVCFHIP 209
I+ A L+G+E+SL+ LK VVL V F+ P
Sbjct: 105 IDRAMALDGEEISLDDLK----------------------WVVLMVLFNQP 133
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase.
Length = 487
Score = 30.1 bits (68), Expect = 0.82
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 22/81 (27%)
Query: 123 FEGGQMPLYRRIPKLRGIAGGMHAG-----LPKYVPVNLKDIEAAGFLEGDEVSLETLKK 177
FEG + R KLR I GG G L + +D A GF GD V +E LK+
Sbjct: 343 FEG-----FDRAGKLRAICGG---GRYDRLLSTF---GGEDTPACGFGFGDAVIVELLKE 391
Query: 178 KGLINPSGRERKLPLKVQDTI 198
KGL+ +LP +V D +
Sbjct: 392 KGLL------PELPHQVDDVV 406
>gnl|CDD|221345 pfam11965, DUF3479, Domain of unknown function (DUF3479). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 160 amino acids in length. This
domain is found associated with pfam02514.
Length = 164
Score = 27.1 bits (61), Expect = 5.4
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 105 GFGMRGQKSR-----------SGPGVRKGFEGGQMPLYRRIPKL 137
F M G+KS +G GQM L RR+PK+
Sbjct: 106 SFSMGGEKSGMPGLLKKLRGKLKKKRSEGEGEGQMKLLRRLPKI 149
>gnl|CDD|239188 cd02787, MopB_CT_ydeP, The MopB_CT_ydeP CD includes a group of
related uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative
molybdopterin cofactor binding site. This CD is of the
conserved molybdopterin_binding C-terminal (MopB_CT)
region present in many, but not all, MopB homologs.
Length = 112
Score = 26.5 bits (59), Expect = 6.0
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 136 KLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKG 179
+ RG+ G V +N DI G GD V LE+ G
Sbjct: 22 RYRGVFGRRDV-----VFMNPDDIARLGLKAGDRVDLESAFGDG 60
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 27.0 bits (60), Expect = 7.5
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 92 KGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 137
GRG G N G G G++S SG E P RR+ L
Sbjct: 58 AGRGFCTG-ANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNL 102
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.402
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,532,818
Number of extensions: 987124
Number of successful extensions: 848
Number of sequences better than 10.0: 1
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 22
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)