RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028403
         (209 letters)



>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 94.3 bits (234), Expect = 2e-25
 Identities = 51/106 (48%), Positives = 61/106 (57%), Gaps = 7/106 (6%)

Query: 77  NNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPK 136
           N L P  GS+K GKR GRGI +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+PK
Sbjct: 1   NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60

Query: 137 LRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLIN 182
                            + L D+     +EG  V L TLK   +I 
Sbjct: 61  FG----FTSRKAAITAEIRLSDLA---KVEGGVVDLNTLKAANIIG 99


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score = 80.4 bits (198), Expect = 4e-20
 Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 78  NLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK-GFEGGQMPLYRRIPK 136
           +L P PG+ KR KR GRG  +G G +   G +GQKSRSG       FEGG+     R+PK
Sbjct: 1   DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK 60

Query: 137 LRGI-AGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPS 184
                        P+Y  VNLKD+         EV+ E L + GL+   
Sbjct: 61  RGMQGQVPGEIKRPRYQGVNLKDLARFEG----EVTPELLVRAGLLKKG 105


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score = 79.3 bits (195), Expect = 1e-19
 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 78  NLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 137
           +L P PGSRK  KR GRG   G   + G G +GQKSRSG G    FEGG+  L  R+PK 
Sbjct: 2   DLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKR 60

Query: 138 RGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-----KKKGLINPSGRERKLPL 192
                G +     Y  V L  ++       D  +LE       K + +   +  E    +
Sbjct: 61  -----GFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISRAV 115

Query: 193 KVQ 195
            V 
Sbjct: 116 TVH 118


>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 13/105 (12%)

Query: 85  SRKRGKRKGRGIAAGQG-NSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGG 143
           S+K+ +R  R    G   N  G G RG +  +G          +   +  + K       
Sbjct: 2   SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKH------EFHNHEPLGKSGFKRPQ 55

Query: 144 MHAGLPKYVPVNLKDIEAAGFLEG------DEVSLETLKKKGLIN 182
                   + V   D               D      ++      
Sbjct: 56  KVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEA 100


>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 262

 Score = 27.3 bits (60), Expect = 1.3
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 51  VLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRG 110
           + N        A+VG G  +N               K   +       G+     F  +G
Sbjct: 141 LKNSWKDLDI-AVVGIGDFSNKGKHQWLDMLTEDDFKELTKVK---TVGEICCRFFDSKG 196

Query: 111 QKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMH 145
           ++      +++      +   + IP+   +A G  
Sbjct: 197 KEVYEN--LQERTIAISLEDLKNIPQSLAVAYGDT 229


>d1qgia_ d.2.1.7 (A:) Endochitosanase {Bacillus circulans [TaxId:
           1397]}
          Length = 259

 Score = 26.4 bits (58), Expect = 2.8
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 14/67 (20%)

Query: 93  GRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMP-LYRRIPKLRGIAGGMHAGLPKY 151
            RG   G   +           +G            P L++     +G +     G  K 
Sbjct: 56  ERGYTIGLFGAT----------TGGSRD---THPDGPDLFKAYDAAKGASNPSADGALKR 102

Query: 152 VPVNLKD 158
           + +N K 
Sbjct: 103 LGINGKM 109


>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 196

 Score = 24.9 bits (54), Expect = 6.4
 Identities = 3/31 (9%), Positives = 10/31 (32%)

Query: 167 GDEVSLETLKKKGLINPSGRERKLPLKVQDT 197
             ++S +    + ++      R L      +
Sbjct: 165 KLKISYKDAINRSMVEDITGLRLLEAASVSS 195


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 739,878
Number of extensions: 33720
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 11
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)