Query 028404
Match_columns 209
No_of_seqs 169 out of 254
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 10:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3350 Uncharacterized conser 100.0 1.2E-63 2.7E-68 423.6 14.8 170 34-209 1-173 (217)
2 PF10237 N6-adenineMlase: Prob 100.0 2.8E-49 6.1E-54 328.3 12.9 122 86-209 1-124 (162)
3 PF01861 DUF43: Protein of unk 98.7 3.1E-08 6.7E-13 87.9 7.9 113 83-199 16-141 (243)
4 KOG4399 C2HC-type Zn-finger pr 97.8 2.5E-06 5.3E-11 77.1 -1.2 76 78-157 87-163 (325)
5 COG1568 Predicted methyltransf 97.6 3.4E-05 7.3E-10 70.9 2.7 95 84-182 125-233 (354)
6 TIGR03704 PrmC_rel_meth putati 97.5 0.0012 2.6E-08 57.8 10.8 116 90-209 64-217 (251)
7 PRK14967 putative methyltransf 97.2 0.0044 9.6E-08 52.5 10.7 114 88-208 14-159 (223)
8 TIGR03534 RF_mod_PrmC protein- 97.2 0.01 2.2E-07 49.9 12.4 126 43-183 23-167 (251)
9 PRK09328 N5-glutamine S-adenos 97.0 0.025 5.4E-07 48.5 13.4 149 44-209 44-239 (275)
10 PRK15128 23S rRNA m(5)C1962 me 96.5 0.012 2.6E-07 55.2 8.2 116 84-208 198-339 (396)
11 TIGR00537 hemK_rel_arch HemK-r 96.4 0.016 3.6E-07 47.2 7.4 101 98-208 9-140 (179)
12 PRK10901 16S rRNA methyltransf 96.2 0.043 9.3E-07 51.4 10.0 109 93-208 229-372 (427)
13 PRK11805 N5-glutamine S-adenos 95.9 0.11 2.5E-06 46.9 11.0 156 43-209 66-264 (307)
14 TIGR01177 conserved hypothetic 95.6 0.085 1.8E-06 47.6 9.1 113 90-207 160-293 (329)
15 PF05175 MTS: Methyltransferas 95.6 0.14 3E-06 41.8 9.6 105 94-207 17-139 (170)
16 TIGR00536 hemK_fam HemK family 95.5 0.2 4.3E-06 44.3 11.0 150 44-209 49-245 (284)
17 TIGR03533 L3_gln_methyl protei 95.5 0.76 1.7E-05 41.0 14.7 130 44-183 55-202 (284)
18 PRK14966 unknown domain/N5-glu 95.2 0.22 4.8E-06 47.8 10.9 110 95-209 236-382 (423)
19 PRK11783 rlmL 23S rRNA m(2)G24 95.0 0.062 1.3E-06 53.8 7.0 117 84-209 516-657 (702)
20 PRK14968 putative methyltransf 94.9 0.23 5.1E-06 39.6 8.9 65 111-182 23-102 (188)
21 PRK09489 rsmC 16S ribosomal RN 94.6 0.35 7.5E-06 44.6 10.2 99 98-206 186-301 (342)
22 KOG2671 Putative RNA methylase 94.0 0.042 9E-07 52.2 2.8 42 145-189 257-303 (421)
23 PHA03412 putative methyltransf 93.9 0.49 1.1E-05 42.4 9.4 94 79-182 22-126 (241)
24 PRK11524 putative methyltransf 93.5 0.14 3.1E-06 45.4 5.2 15 168-182 25-39 (284)
25 cd02440 AdoMet_MTases S-adenos 93.5 0.6 1.3E-05 31.6 7.3 52 151-206 50-102 (107)
26 PRK14902 16S rRNA methyltransf 93.1 0.56 1.2E-05 44.1 8.9 88 89-182 231-332 (444)
27 PRK14903 16S rRNA methyltransf 93.1 0.49 1.1E-05 44.8 8.5 88 90-183 219-320 (431)
28 TIGR00563 rsmB ribosomal RNA s 93.0 0.69 1.5E-05 43.3 9.3 117 87-208 217-368 (426)
29 PRK14901 16S rRNA methyltransf 93.0 0.47 1E-05 44.7 8.1 115 90-208 234-384 (434)
30 PRK01544 bifunctional N5-gluta 92.0 0.55 1.2E-05 45.5 7.3 92 112-209 139-270 (506)
31 PF03602 Cons_hypoth95: Conser 91.9 0.094 2E-06 44.2 1.8 27 168-197 112-138 (183)
32 PF01170 UPF0020: Putative RNA 91.6 0.23 5.1E-06 41.3 3.9 44 136-183 64-119 (179)
33 COG0742 N6-adenine-specific me 91.3 0.23 5E-06 42.8 3.7 13 170-182 114-126 (187)
34 PRK00312 pcm protein-L-isoaspa 91.0 1.6 3.5E-05 36.4 8.3 108 86-209 56-176 (212)
35 TIGR00446 nop2p NOL1/NOP2/sun 90.4 0.5 1.1E-05 41.5 5.0 112 90-208 52-199 (264)
36 COG2263 Predicted RNA methylas 90.1 1.6 3.4E-05 38.3 7.7 98 79-183 12-121 (198)
37 PF13659 Methyltransf_26: Meth 90.0 0.21 4.6E-06 37.0 2.0 48 133-183 23-83 (117)
38 COG1041 Predicted DNA modifica 89.4 0.25 5.3E-06 46.4 2.4 95 85-183 170-277 (347)
39 PRK14904 16S rRNA methyltransf 89.4 2.7 5.9E-05 39.7 9.4 106 94-208 236-377 (445)
40 PF10672 Methyltrans_SAM: S-ad 89.1 0.22 4.8E-06 45.2 1.8 116 84-208 101-238 (286)
41 COG2890 HemK Methylase of poly 88.8 1.4 3.1E-05 39.5 6.7 132 43-184 46-190 (280)
42 PRK10909 rsmD 16S rRNA m(2)G96 88.8 0.57 1.2E-05 40.1 4.0 69 111-182 53-133 (199)
43 PRK00811 spermidine synthase; 87.7 2.7 5.8E-05 37.5 7.7 95 111-206 76-189 (283)
44 PRK15001 SAM-dependent 23S rib 87.6 3.8 8.3E-05 38.6 9.0 110 92-207 208-339 (378)
45 PHA03411 putative methyltransf 87.1 1.4 3.1E-05 40.2 5.7 93 80-182 36-138 (279)
46 TIGR00417 speE spermidine synt 86.0 3.2 7E-05 36.4 7.2 97 111-208 72-186 (270)
47 PRK13168 rumA 23S rRNA m(5)U19 85.8 5.9 0.00013 37.4 9.3 86 94-183 279-380 (443)
48 TIGR00438 rrmJ cell division p 84.9 7.4 0.00016 31.8 8.5 95 111-206 32-144 (188)
49 TIGR02085 meth_trns_rumB 23S r 84.7 5.1 0.00011 37.1 8.2 97 95-196 216-324 (374)
50 TIGR00095 RNA methyltransferas 83.3 1.6 3.4E-05 36.8 3.9 14 170-183 121-134 (189)
51 PRK03612 spermidine synthase; 83.2 4.8 0.0001 39.1 7.6 95 111-207 297-414 (521)
52 KOG3420 Predicted RNA methylas 82.9 3.2 6.9E-05 35.7 5.5 95 84-183 20-127 (185)
53 TIGR00477 tehB tellurite resis 82.6 8.8 0.00019 31.9 8.1 112 83-206 6-131 (195)
54 TIGR00080 pimt protein-L-isoas 82.4 11 0.00023 31.7 8.6 106 89-208 58-177 (215)
55 PRK05134 bifunctional 3-demeth 82.3 4.2 9.2E-05 34.0 6.1 92 111-208 48-151 (233)
56 COG1092 Predicted SAM-dependen 81.6 2.1 4.6E-05 40.8 4.4 90 83-183 194-303 (393)
57 PRK00517 prmA ribosomal protei 81.2 10 0.00023 32.7 8.3 105 96-207 105-212 (250)
58 PF12847 Methyltransf_18: Meth 81.1 7 0.00015 28.4 6.3 91 112-208 2-111 (112)
59 PRK01581 speE spermidine synth 80.0 15 0.00032 35.0 9.5 47 98-146 138-187 (374)
60 TIGR00406 prmA ribosomal prote 79.8 27 0.00059 31.0 10.7 104 95-207 144-258 (288)
61 PF13847 Methyltransf_31: Meth 79.0 5.1 0.00011 31.4 5.2 93 111-207 3-109 (152)
62 PRK04457 spermidine synthase; 78.6 6 0.00013 34.9 6.1 91 111-206 66-175 (262)
63 PRK05031 tRNA (uracil-5-)-meth 77.8 2.5 5.4E-05 39.0 3.6 46 96-143 191-238 (362)
64 PRK10904 DNA adenine methylase 77.7 4.2 9.1E-05 36.1 4.8 37 170-207 174-226 (271)
65 TIGR00138 gidB 16S rRNA methyl 76.4 36 0.00079 28.3 9.9 89 111-209 42-143 (181)
66 PRK03522 rumB 23S rRNA methylu 76.1 17 0.00037 32.7 8.3 83 97-182 158-252 (315)
67 COG4123 Predicted O-methyltran 75.7 4.1 8.8E-05 36.7 4.2 86 90-182 27-127 (248)
68 TIGR00308 TRM1 tRNA(guanine-26 73.7 4.5 9.7E-05 38.0 4.1 28 169-199 113-140 (374)
69 PRK00377 cbiT cobalt-precorrin 73.1 51 0.0011 27.2 9.9 90 111-207 40-144 (198)
70 PRK14103 trans-aconitate 2-met 73.0 13 0.00029 31.9 6.6 117 85-207 2-125 (255)
71 PRK01683 trans-aconitate 2-met 72.7 19 0.00042 30.6 7.5 118 84-208 3-130 (258)
72 PTZ00146 fibrillarin; Provisio 72.6 30 0.00065 31.9 9.1 108 95-206 112-235 (293)
73 TIGR00571 dam DNA adenine meth 72.3 7.1 0.00015 34.5 4.8 38 170-208 172-225 (266)
74 PRK10258 biotin biosynthesis p 72.2 13 0.00029 31.6 6.4 90 111-208 42-140 (251)
75 PRK11188 rrmJ 23S rRNA methylt 72.2 46 0.001 28.2 9.6 94 111-206 51-163 (209)
76 TIGR03246 arg_catab_astC succi 72.1 48 0.0011 30.4 10.4 106 92-199 74-211 (397)
77 TIGR02752 MenG_heptapren 2-hep 71.0 39 0.00085 28.1 8.9 92 111-207 45-150 (231)
78 PRK00536 speE spermidine synth 71.0 36 0.00078 30.6 9.1 91 98-199 60-163 (262)
79 PRK14896 ksgA 16S ribosomal RN 70.9 17 0.00038 31.6 6.9 87 85-182 5-103 (258)
80 PTZ00338 dimethyladenosine tra 69.8 17 0.00037 32.9 6.8 90 81-181 8-112 (294)
81 COG2813 RsmC 16S RNA G1207 met 69.3 25 0.00053 32.7 7.8 82 112-199 159-259 (300)
82 PRK04338 N(2),N(2)-dimethylgua 69.2 7.3 0.00016 36.6 4.5 86 113-208 59-157 (382)
83 smart00650 rADc Ribosomal RNA 68.8 13 0.00029 29.9 5.4 66 111-182 13-89 (169)
84 PLN02476 O-methyltransferase 67.8 29 0.00063 31.5 7.9 105 88-199 98-220 (278)
85 PF04378 RsmJ: Ribosomal RNA s 66.8 4.5 9.8E-05 36.2 2.4 29 171-199 126-154 (245)
86 PRK08287 cobalt-precorrin-6Y C 66.2 63 0.0014 26.3 9.0 106 92-207 14-130 (187)
87 PLN02781 Probable caffeoyl-CoA 66.1 40 0.00088 29.1 8.2 58 88-148 48-108 (234)
88 PRK11207 tellurite resistance 65.5 36 0.00078 28.3 7.5 88 111-206 30-132 (197)
89 PRK04266 fibrillarin; Provisio 64.8 94 0.002 27.0 11.3 92 111-206 72-174 (226)
90 PRK11933 yebU rRNA (cytosine-C 64.7 31 0.00068 33.5 7.9 90 88-182 90-195 (470)
91 COG0116 Predicted N6-adenine-s 64.7 10 0.00022 36.2 4.5 68 136-208 257-344 (381)
92 PLN02823 spermine synthase 64.2 45 0.00098 30.9 8.6 49 98-148 91-142 (336)
93 PRK12270 kgd alpha-ketoglutara 63.0 17 0.00036 39.3 6.0 91 94-209 1024-1118(1228)
94 PLN02366 spermidine synthase 62.5 78 0.0017 28.9 9.7 33 111-144 91-126 (308)
95 COG2961 ComJ Protein involved 61.3 33 0.0007 31.7 6.9 26 171-196 157-182 (279)
96 PRK10742 putative methyltransf 60.3 5.5 0.00012 35.9 1.8 16 169-184 163-178 (250)
97 TIGR00479 rumA 23S rRNA (uraci 58.6 12 0.00027 34.9 3.9 86 93-182 273-374 (431)
98 PRK11783 rlmL 23S rRNA m(2)G24 57.9 14 0.00031 37.2 4.4 15 169-183 302-316 (702)
99 TIGR02072 BioC biotin biosynth 57.9 51 0.0011 26.8 7.0 107 96-207 19-134 (240)
100 COG0144 Sun tRNA and rRNA cyto 57.7 47 0.001 30.8 7.5 92 90-186 137-245 (355)
101 PRK00216 ubiE ubiquinone/menaq 56.8 1.1E+02 0.0023 25.0 9.2 108 91-207 34-157 (239)
102 COG1313 PflX Uncharacterized F 55.0 39 0.00084 31.8 6.4 98 80-192 133-237 (335)
103 TIGR02469 CbiT precorrin-6Y C5 54.4 81 0.0017 22.8 10.3 89 111-206 19-120 (124)
104 PRK05939 hypothetical protein; 53.5 82 0.0018 29.4 8.4 101 90-194 39-158 (397)
105 PRK00854 rocD ornithine--oxo-a 50.5 91 0.002 28.2 8.0 90 91-182 79-199 (401)
106 KOG2356 Transcriptional activa 49.8 7.6 0.00017 36.6 1.0 34 151-184 165-198 (366)
107 PRK13255 thiopurine S-methyltr 49.7 1.6E+02 0.0034 25.3 9.0 118 82-206 7-153 (218)
108 PRK12335 tellurite resistance 49.2 1.2E+02 0.0026 26.7 8.4 89 111-207 120-223 (287)
109 PF13651 EcoRI_methylase: Aden 49.0 15 0.00034 34.6 2.8 27 167-199 132-158 (336)
110 PF09445 Methyltransf_15: RNA 48.8 8.7 0.00019 32.3 1.1 15 171-185 70-84 (163)
111 PF14972 Mito_morph_reg: Mitoc 48.5 14 0.0003 31.7 2.3 22 163-184 24-45 (165)
112 PF10294 Methyltransf_16: Puta 46.6 29 0.00064 28.5 3.9 106 95-207 22-155 (173)
113 TIGR03840 TMPT_Se_Te thiopurin 46.2 1.9E+02 0.0041 24.7 9.5 122 82-207 4-151 (213)
114 PF02384 N6_Mtase: N-6 DNA Met 46.0 9.7 0.00021 33.5 1.0 94 84-183 22-138 (311)
115 TIGR01983 UbiG ubiquinone bios 45.9 1E+02 0.0022 25.4 7.0 110 93-208 26-149 (224)
116 PLN02589 caffeoyl-CoA O-methyl 45.7 1.2E+02 0.0027 26.8 7.9 86 90-178 61-164 (247)
117 PRK11036 putative S-adenosyl-L 45.4 87 0.0019 26.9 6.8 93 111-207 44-148 (255)
118 PRK00121 trmB tRNA (guanine-N( 45.2 97 0.0021 25.9 6.9 95 111-208 40-156 (202)
119 PRK06234 methionine gamma-lyas 45.0 42 0.00091 31.1 5.1 89 89-179 55-158 (400)
120 PRK13942 protein-L-isoaspartat 45.0 1.1E+02 0.0024 25.8 7.3 85 111-206 76-174 (212)
121 cd02036 MinD Bacterial cell di 43.6 32 0.00068 26.9 3.5 14 133-146 28-41 (179)
122 PF07669 Eco57I: Eco57I restri 43.1 14 0.00031 28.1 1.4 15 170-184 2-16 (106)
123 PLN03075 nicotianamine synthas 42.9 1.7E+02 0.0036 27.0 8.5 119 83-208 91-233 (296)
124 cd03111 CpaE_like This protein 42.3 1.3E+02 0.0028 22.5 6.5 59 133-197 29-90 (106)
125 PF02086 MethyltransfD12: D12 42.2 14 0.00029 31.3 1.3 14 169-182 176-189 (260)
126 PF06325 PrmA: Ribosomal prote 41.7 1.3E+02 0.0028 27.5 7.6 102 95-207 146-258 (295)
127 KOG3201 Uncharacterized conser 41.6 35 0.00075 29.9 3.6 41 165-206 98-139 (201)
128 TIGR00755 ksgA dimethyladenosi 39.3 94 0.002 26.8 6.1 88 84-182 4-106 (253)
129 PRK07327 enoyl-CoA hydratase; 37.8 86 0.0019 27.5 5.7 39 171-209 23-64 (268)
130 PRK11727 23S rRNA mA1618 methy 37.7 27 0.00059 32.3 2.6 73 112-184 115-203 (321)
131 PRK03244 argD acetylornithine 37.6 1.7E+02 0.0037 26.4 7.7 31 151-181 164-194 (398)
132 TIGR02143 trmA_only tRNA (urac 37.5 37 0.0008 31.3 3.4 48 94-143 180-229 (353)
133 PRK08317 hypothetical protein; 37.1 1.5E+02 0.0032 24.0 6.6 92 111-207 19-123 (241)
134 PRK02936 argD acetylornithine 36.9 3.1E+02 0.0067 24.5 9.3 32 151-182 148-179 (377)
135 PRK00274 ksgA 16S ribosomal RN 36.1 1.4E+02 0.0031 26.2 6.8 93 82-183 15-118 (272)
136 PLN02396 hexaprenyldihydroxybe 35.6 1.2E+02 0.0025 28.0 6.4 83 111-208 131-235 (322)
137 PF13649 Methyltransf_25: Meth 34.8 41 0.00089 24.4 2.7 64 132-199 23-99 (101)
138 PRK01278 argD acetylornithine 32.8 2.9E+02 0.0063 24.9 8.4 31 151-181 156-186 (389)
139 COG1743 Adenine-specific DNA m 32.7 21 0.00046 37.4 1.1 15 169-183 488-502 (875)
140 KOG2098 Predicted N6-adenine R 32.3 25 0.00053 35.0 1.4 16 165-180 384-399 (591)
141 COG2521 Predicted archaeal met 32.2 72 0.0016 29.5 4.3 81 111-192 134-226 (287)
142 TIGR00707 argD acetylornithine 31.6 2.7E+02 0.0058 24.6 7.9 31 151-181 151-181 (379)
143 cd03115 SRP The signal recogni 31.4 1.7E+02 0.0037 23.2 6.0 21 97-121 17-37 (173)
144 cd02042 ParA ParA and ParB of 30.9 62 0.0014 23.4 3.1 55 132-194 27-84 (104)
145 PRK05703 flhF flagellar biosyn 30.7 2E+02 0.0044 27.4 7.3 85 112-197 221-326 (424)
146 PLN02336 phosphoethanolamine N 30.6 4.3E+02 0.0093 24.8 9.4 92 111-208 266-369 (475)
147 cd00614 CGS_like CGS_like: Cys 30.1 83 0.0018 28.5 4.4 85 92-180 37-135 (369)
148 PRK15451 tRNA cmo(5)U34 methyl 29.9 3.6E+02 0.0077 23.1 8.6 90 111-207 56-163 (247)
149 COG0338 Dam Site-specific DNA 28.9 32 0.0007 31.3 1.5 30 170-199 173-219 (274)
150 COG4098 comFA Superfamily II D 28.8 2.8E+02 0.0061 27.1 7.7 80 113-207 144-240 (441)
151 PLN03142 Probable chromatin-re 28.4 2.7E+02 0.0059 30.1 8.3 93 112-209 219-327 (1033)
152 COG0863 DNA modification methy 28.0 30 0.00065 29.7 1.1 14 170-183 35-48 (302)
153 COG4122 Predicted O-methyltran 27.8 80 0.0017 27.9 3.8 81 94-177 45-139 (219)
154 PRK00107 gidB 16S rRNA methylt 27.8 3.7E+02 0.008 22.6 9.6 89 111-207 45-144 (187)
155 PF04016 DUF364: Domain of unk 27.6 96 0.0021 25.2 4.0 57 111-176 10-68 (147)
156 PF05958 tRNA_U5-meth_tr: tRNA 27.4 29 0.00063 32.0 1.0 15 170-184 278-292 (352)
157 smart00138 MeTrc Methyltransfe 27.3 4.3E+02 0.0093 23.2 9.2 115 88-207 71-241 (264)
158 PLN02672 methionine S-methyltr 27.1 58 0.0013 35.2 3.2 70 112-184 119-217 (1082)
159 TIGR01934 MenG_MenH_UbiE ubiqu 26.9 3.4E+02 0.0073 21.8 9.1 91 111-207 39-142 (223)
160 TIGR02304 aden_form_hyp probab 26.2 1.6E+02 0.0035 28.1 5.8 52 112-183 143-200 (430)
161 PRK06922 hypothetical protein; 25.7 4.5E+02 0.0097 27.3 9.0 93 111-207 418-536 (677)
162 PF01974 tRNA_int_endo: tRNA i 25.7 2.4E+02 0.0053 20.4 5.5 68 123-208 7-76 (85)
163 cd02037 MRP-like MRP (Multiple 25.5 53 0.0011 26.2 2.1 50 132-184 27-82 (169)
164 COG2243 CobF Precorrin-2 methy 25.3 63 0.0014 29.0 2.7 39 84-127 69-107 (234)
165 PRK12727 flagellar biosynthesi 25.2 2.6E+02 0.0055 28.3 7.1 72 111-182 349-440 (559)
166 cd00616 AHBA_syn 3-amino-5-hyd 25.1 1.8E+02 0.0039 25.2 5.5 100 91-192 14-128 (352)
167 PRK08247 cystathionine gamma-s 25.0 3.8E+02 0.0083 24.3 7.8 102 89-194 43-163 (366)
168 PF10539 Dev_Cell_Death: Devel 24.7 53 0.0011 27.1 1.9 28 118-145 22-50 (130)
169 COG2265 TrmA SAM-dependent met 24.7 83 0.0018 30.3 3.6 48 153-205 343-392 (432)
170 PRK13944 protein-L-isoaspartat 24.5 4.1E+02 0.009 22.1 9.0 86 111-207 72-172 (205)
171 PLN02244 tocopherol O-methyltr 24.4 5.4E+02 0.012 23.4 10.4 104 98-208 99-223 (340)
172 COG4152 ABC-type uncharacteriz 23.7 1.6E+02 0.0034 27.6 4.9 43 165-208 143-187 (300)
173 TIGR02987 met_A_Alw26 type II 23.5 46 0.00099 32.0 1.6 92 87-182 3-124 (524)
174 PF04432 FrhB_FdhB_C: Coenzyme 23.1 1.3E+02 0.0027 24.4 3.9 15 111-125 3-17 (161)
175 COG4963 CpaE Flp pilus assembl 22.8 1.3E+02 0.0027 28.8 4.3 59 135-199 177-240 (366)
176 PF02562 PhoH: PhoH-like prote 22.6 1E+02 0.0022 26.8 3.4 37 165-207 111-152 (205)
177 TIGR01425 SRP54_euk signal rec 22.5 2.1E+02 0.0046 27.7 5.9 86 92-179 74-191 (429)
178 cd06542 GH18_EndoS-like Endo-b 22.4 1.9E+02 0.0041 24.7 5.0 41 167-209 24-72 (255)
179 smart00767 DCD DCD is a plant 22.2 55 0.0012 27.1 1.6 28 118-145 24-52 (132)
180 COG0421 SpeE Spermidine syntha 22.2 1.5E+02 0.0032 27.0 4.5 34 111-145 76-112 (282)
181 smart00534 MUTSac ATPase domai 21.2 1.5E+02 0.0032 24.3 4.0 39 170-208 78-119 (185)
182 PF01596 Methyltransf_3: O-met 21.0 64 0.0014 27.7 1.8 101 93-198 30-147 (205)
183 TIGR01091 upp uracil phosphori 21.0 2.3E+02 0.0049 24.2 5.2 54 93-146 134-187 (207)
184 PF00072 Response_reg: Respons 20.9 1.9E+02 0.0041 20.3 4.1 8 170-177 43-50 (112)
185 TIGR00631 uvrb excinuclease AB 20.8 5E+02 0.011 26.4 8.3 49 154-208 89-138 (655)
186 COG1484 DnaC DNA replication p 20.7 1.3E+02 0.0028 26.5 3.8 13 170-182 167-183 (254)
187 TIGR01324 cysta_beta_ly_B cyst 20.6 4.2E+02 0.0091 24.5 7.3 103 88-194 40-162 (377)
188 TIGR01326 OAH_OAS_sulfhy OAH/O 20.3 1.6E+02 0.0034 27.5 4.4 85 92-180 54-152 (418)
189 PF06372 Gemin6: Gemin6 protei 20.3 34 0.00074 29.2 0.0 17 171-187 129-145 (166)
No 1
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-63 Score=423.56 Aligned_cols=170 Identities=51% Similarity=0.859 Sum_probs=155.8
Q ss_pred CCcCCCCCCCCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCcccccCcccccccccccChHHHHHHHHHHHhhcCCCCC
Q 028404 34 VEVEEDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDS 113 (209)
Q Consensus 34 ~~~~~ddd~~~LSa~tLaAL~eF~~E~~~~~~~f~~~~~~~~~~~~~~~EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~ 113 (209)
|++.+|||+|+|||+|||||+||++||+++++.+++. ...|..++||||||||||+++|++.||.+++.+++ +++
T Consensus 1 ~sD~e~Dd~~~LsA~aLAaL~eF~aEq~k~~e~~~~~----~~~i~~~~eDwQlsqfwy~~eta~~La~e~v~~s~-e~~ 75 (217)
T KOG3350|consen 1 DSDVEDDDDLQLSADALAALNEFLAEQQKRIEEEENQ----SDIIEKIGEDWQLSQFWYSDETARKLAAERVEASG-EGS 75 (217)
T ss_pred CCccccCcccccCHHHHHHHHHHHHHHHhhhhccCch----hhhhhhcccchhhhhhhcCHHHHHHHHHHHHhhcc-cCc
Confidence 4566778999999999999999999999998776522 24688999999999999999999999999999998 889
Q ss_pred eEEEEeCchHHHHHHhh---CCCCCceEEeecccccccCCcceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHH
Q 028404 114 RVACIACPTLYAYLKKI---RPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVS 190 (209)
Q Consensus 114 rIaclstPSly~~Lk~~---~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A 190 (209)
|||||||||||...++. .|..+++|||||+||+.||.+|+|||||.|+++|.+|++.||+||+|||||++||+.|++
T Consensus 76 rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts 155 (217)
T KOG3350|consen 76 RIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYGTEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTS 155 (217)
T ss_pred eEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhccceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhH
Confidence 99999999988655543 477899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEecC
Q 028404 191 ETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 191 ~Tik~L~k~~~~kiilcTG 209 (209)
+|||.|.++ ..|||||||
T Consensus 156 ~tik~L~r~-~~kvilCtG 173 (217)
T KOG3350|consen 156 ETIKRLQRN-QKKVILCTG 173 (217)
T ss_pred HHHHHHhcC-CceEEEech
Confidence 999999998 559999999
No 2
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=100.00 E-value=2.8e-49 Score=328.29 Aligned_cols=122 Identities=53% Similarity=0.999 Sum_probs=116.9
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHh-hCCCCCceEEeecccccccCCc-ceeecCCCCCCc
Q 028404 86 RLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK-IRPEVSPKILEYDMRFEQYGSD-FAFYDYNQPQDL 163 (209)
Q Consensus 86 qlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~-~~~~~~~~LLE~D~RF~~~g~~-FvfYDyn~P~~l 163 (209)
||||||||++|+++|++++.+++. ++++||||||||||++|++ ..++.+++|||||+||++||++ |+|||||+|+++
T Consensus 1 qlsQfwYs~~T~~~l~~~l~~~~~-~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 1 QLSQFWYSDETAEFLARELLDGAL-DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEEL 79 (162)
T ss_pred CccccccCHHHHHHHHHHHHHhcC-CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhh
Confidence 799999999999999999999887 7899999999999999998 5678999999999999999865 999999999999
Q ss_pred hHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
|++++|+||+||+||||+++|||+|+|+|+|+|+++ +.|||+|||
T Consensus 80 ~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~-~~kii~~Tg 124 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKP-GGKIILCTG 124 (162)
T ss_pred hhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCc-cceEEEecH
Confidence 999999999999999999999999999999999998 779999998
No 3
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.74 E-value=3.1e-08 Score=87.89 Aligned_cols=113 Identities=22% Similarity=0.251 Sum_probs=70.1
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCc---hHHHHHHhhCCCCCceEEeecccccccC-------C--
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACP---TLYAYLKKIRPEVSPKILEYDMRFEQYG-------S-- 150 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstP---Sly~~Lk~~~~~~~~~LLE~D~RF~~~g-------~-- 150 (209)
-+-.+-|..=+.+|.-+=|..+.+..+-.+++|+|||.- ||..+|.. +..+++++|+|.|.-.|- +
T Consensus 16 ~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~--~~~~I~VvDiDeRll~fI~~~a~~~gl~ 93 (243)
T PF01861_consen 16 PDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTG--LPKRITVVDIDERLLDFINRVAEEEGLP 93 (243)
T ss_dssp --GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred CccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhC--CCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence 455667877788887766666666543368999999987 88888865 456899999999997762 1
Q ss_pred -cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
+.++||+++| ||+++.++||++++||||--+-.--=+++.|..|..+
T Consensus 94 i~~~~~DlR~~--LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~ 141 (243)
T PF01861_consen 94 IEAVHYDLRDP--LPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGE 141 (243)
T ss_dssp EEEE---TTS-----TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-ST
T ss_pred eEEEEeccccc--CCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 5789999999 8999999999999999999877555567888877654
No 4
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=97.83 E-value=2.5e-06 Score=77.14 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=66.0
Q ss_pred cccCcccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccccccc-CCcceeec
Q 028404 78 VALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY-GSDFAFYD 156 (209)
Q Consensus 78 ~~~~~EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~-g~~FvfYD 156 (209)
+..++|+...+||.++.+|...|.+.+... +..-|+||++|.++..+++..|...+++++||.||.+| ++ |-.-|
T Consensus 87 L~~i~e~~gE~~F~~T~~~L~~~~d~~~~S---~~~~i~Cv~~~~~~d~~~~~~P~~~iF~~~~e~R~~qFFPS-~Q~~~ 162 (325)
T KOG4399|consen 87 LKFIEEDKGEGIFCQTCPPLGGLDDPGAHS---EHKFIACVIEGQSQDDSHKELPIFWIFPYFFESRICQFFPS-FQMLD 162 (325)
T ss_pred cCccccccCcceEEEecCccCCccchhhhh---hceeEEEEeccccccchhhhCchhheehhhHHHHHHHhCch-Hhhhh
Confidence 457889999999999999999999988765 67899999999999999998899999999999999997 54 44333
Q ss_pred C
Q 028404 157 Y 157 (209)
Q Consensus 157 y 157 (209)
|
T Consensus 163 Y 163 (325)
T KOG4399|consen 163 Y 163 (325)
T ss_pred h
Confidence 3
No 5
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.61 E-value=3.4e-05 Score=70.90 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=65.9
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCc---hHHHHHHhhCCCCCceEEeecccccccCC----------
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACP---TLYAYLKKIRPEVSPKILEYDMRFEQYGS---------- 150 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstP---Sly~~Lk~~~~~~~~~LLE~D~RF~~~g~---------- 150 (209)
+.+--|=+-+.+|.-.=+..+-+-.+-.+++|.+||.. ||..+|-.+ -.++.++|+|.|.-.|-.
T Consensus 125 ~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGDDDLtsia~aLt~m--pk~iaVvDIDERli~fi~k~aee~g~~~ 202 (354)
T COG1568 125 LHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGDDDLTSIALALTGM--PKRIAVVDIDERLIKFIEKVAEELGYNN 202 (354)
T ss_pred chhcccccccccceeeeeeeeccccCcCCCeEEEEcCchhhHHHHHhcCC--CceEEEEechHHHHHHHHHHHHHhCccc
Confidence 44555666666664332222222222257889999987 555566542 358999999998766521
Q ss_pred -cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+=+.||.++| +|+.++++||++++|||.--
T Consensus 203 ie~~~~Dlr~p--lpe~~~~kFDvfiTDPpeTi 233 (354)
T COG1568 203 IEAFVFDLRNP--LPEDLKRKFDVFITDPPETI 233 (354)
T ss_pred hhheeehhccc--ChHHHHhhCCeeecCchhhH
Confidence 3468999999 89999999999999999643
No 6
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.50 E-value=0.0012 Score=57.78 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=71.8
Q ss_pred cccChHHHHHHHHHHHhhcCC--CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cCCcceeecC
Q 028404 90 FWYDAVTAETVAQEAVSLCSD--SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YGSDFAFYDY 157 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~--~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g~~FvfYDy 157 (209)
||=...| +.|++.++..... +..+|+=++|=|=.. .+.+..+..+++.+|++..=-. .+.+|+.-|.
T Consensus 64 f~pr~~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 64 FVPRRRT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred cCCCccH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeec
Confidence 4433444 6666666654321 234787666665444 4444456678999999874322 2224666666
Q ss_pred CCCCCchHhhcccccEEEECCCCCCH--------------------------HHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPYLSK--------------------------ECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlse--------------------------ec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
.++ ++..+.++||+||+||||... +++.++...+..++++ ++++++.+|
T Consensus 143 ~~~--l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-gG~l~l~~~ 217 (251)
T TIGR03704 143 YDA--LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-GGHLLVETS 217 (251)
T ss_pred hhh--cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 543 344455789999999999842 2345677777777787 567888775
No 7
>PRK14967 putative methyltransferase; Provisional
Probab=97.22 E-value=0.0044 Score=52.51 Aligned_cols=114 Identities=19% Similarity=0.250 Sum_probs=68.3
Q ss_pred cccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHh-hCCCCCceEEeeccccccc--------CC--cceeec
Q 028404 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK-IRPEVSPKILEYDMRFEQY--------GS--DFAFYD 156 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~-~~~~~~~~LLE~D~RF~~~--------g~--~FvfYD 156 (209)
-+||....| ..|++.+....-.++.+|+-+||-+=+..+.- ..+..+++.+|++...... +- .++.-|
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d 92 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD 92 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc
Confidence 357888877 45667665542225679999999865543321 1223488999999855432 21 233334
Q ss_pred CCCCCCchHhhcccccEEEECCCCCCH---------------------HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 157 YNQPQDLPLELKHAFSVVVVDPPYLSK---------------------ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlse---------------------ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+..+ ++ .++||+||++|||... +.++++...+..++++ ++++++++
T Consensus 93 ~~~~--~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~-gG~l~~~~ 159 (223)
T PRK14967 93 WARA--VE---FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP-GGSLLLVQ 159 (223)
T ss_pred hhhh--cc---CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 4332 22 3689999999999842 2244454445555565 45777753
No 8
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.18 E-value=0.01 Score=49.93 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCcccccCcccccccccc------cChHHHHHHHHHHHhhcCCCCCeEE
Q 028404 43 PMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFW------YDAVTAETVAQEAVSLCSDSDSRVA 116 (209)
Q Consensus 43 ~~LSa~tLaAL~eF~~E~~~~~~~f~~~~~~~~~~~~~~~EDwqlSQFW------YSd~Ta~~La~~l~~~a~~~~~rIa 116 (209)
..|+...++.|+.++.++..+.. .+ .+....+-|... |. ........+.+.+.+.......+|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~p-l~--------~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~il 92 (251)
T TIGR03534 23 KELTPEELARFEALLARRAKGEP-VA--------YILGEREFYGLD-FKVSPGVLIPRPDTEELVEAALERLKKGPLRVL 92 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCC-HH--------HHcccceEeceE-EEECCCcccCCCChHHHHHHHHHhcccCCCeEE
Confidence 46888899999999988865531 11 000111222211 11 1111233444444444432456898
Q ss_pred EEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C-C--cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 117 CIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 117 clstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
=+||=+=+. .+.+..+..+++.+|++.+.-.. + + +|+.-|...+ ++ .++||+||++|||...
T Consensus 93 Dig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~---~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 93 DLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP--LP---GGKFDLIVSNPPYIPE 167 (251)
T ss_pred EEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--Cc---CCceeEEEECCCCCch
Confidence 888886555 33344566789999998754432 1 1 3444454433 22 3679999999999863
No 9
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.00 E-value=0.025 Score=48.49 Aligned_cols=149 Identities=20% Similarity=0.305 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhh-HhhhcccCCCCcccccCcccccccccccCh------HHHHHHHHHHHhhcC-CCCCeE
Q 028404 44 MLSSQALAALQEFLSEQNQTS-ETAQNKTESDSDEVALVSEDWRLSQFWYDA------VTAETVAQEAVSLCS-DSDSRV 115 (209)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~-~~f~~~~~~~~~~~~~~~EDwqlSQFWYSd------~Ta~~La~~l~~~a~-~~~~rI 115 (209)
.++.+.++.+++++..+..+. -++- ....+-|.+ .|.-+. ...+.|++.+..... .+..+|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~p~~~i----------~g~~~f~~~-~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~v 112 (275)
T PRK09328 44 ELTPEELERFRALVARRAAGEPLQYI----------LGEAEFWGL-DFKVSPGVLIPRPETEELVEWALEALLLKEPLRV 112 (275)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHH----------ceeceEcCc-EEEECCCceeCCCCcHHHHHHHHHhccccCCCEE
Confidence 478888888999998886542 1111 111122221 222221 112455555553221 146689
Q ss_pred EEEeCch--HHHHHHhhCCCCCceEEeeccccccc---------CC--cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 116 ACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY---------GS--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 116 aclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~---------g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+=+||=+ +...+....+..+++..|++...-.. .. +|+.=|...|. + .++||+||++|||..
T Consensus 113 LDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--~---~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 113 LDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--P---GGRFDLIVSNPPYIP 187 (275)
T ss_pred EEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--C---CCceeEEEECCCcCC
Confidence 8888875 33455555567789999998754211 11 45555554442 1 468999999999986
Q ss_pred HHH--------------------------HHHHHHHHHHhcCCCCCcEEEecC
Q 028404 183 KEC--------------------------LEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 183 eec--------------------------~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
... +.++...+..++++ ++.+++-+|
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~e~g 239 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLLEIG 239 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEEEEC
Confidence 432 23444445566776 456776554
No 10
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.47 E-value=0.012 Score=55.22 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=68.8
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCC-CCCceEEeecccccccCC------------
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRP-EVSPKILEYDMRFEQYGS------------ 150 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~-~~~~~LLE~D~RF~~~g~------------ 150 (209)
+-+...|+++....+..+..+. .+++|+-++|=|=...+..... ..+++.+|.+.+......
T Consensus 198 ~g~ktG~flDqr~~R~~~~~~~-----~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~ 272 (396)
T PRK15128 198 GGHKTGYYLDQRDSRLATRRYV-----ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSK 272 (396)
T ss_pred cccccCcChhhHHHHHHHHHhc-----CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCc
Confidence 3444558888777666665543 4679999999876655543222 347999999987654321
Q ss_pred -cceeecCCCCCCchHhh---cccccEEEECCCCCCHHH---------HHHHHHHHHHhcCCCCCcEEEec
Q 028404 151 -DFAFYDYNQPQDLPLEL---KHAFSVVVVDPPYLSKEC---------LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~l---k~~fD~Vv~DPPFlseec---------~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|+.-|..+ +...+ .++||+||+||||....- ...+...+..|+++ ++.|++||
T Consensus 273 v~~i~~D~~~---~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~-gG~lv~~s 339 (396)
T PRK15128 273 AEFVRDDVFK---LLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP-GGILLTFS 339 (396)
T ss_pred EEEEEccHHH---HHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 123233221 11222 247999999999976431 22233344556666 45788764
No 11
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.36 E-value=0.016 Score=47.15 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccccCC----------cceeecCCCCCCchHhh
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGS----------DFAFYDYNQPQDLPLEL 167 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~g~----------~FvfYDyn~P~~lp~~l 167 (209)
..|...+... ++++|+=+||-+=+..+.-.....+++.+|++..+..... +++.-|.-. .+
T Consensus 9 ~~l~~~l~~~---~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~------~~ 79 (179)
T TIGR00537 9 LLLEANLREL---KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK------GV 79 (179)
T ss_pred HHHHHHHHhc---CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc------cc
Confidence 4444444433 4678999999876664432212237999999987754311 222223221 12
Q ss_pred cccccEEEECCCCCCH---------------------HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 168 KHAFSVVVVDPPYLSK---------------------ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 168 k~~fD~Vv~DPPFlse---------------------ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++||+|+++|||... +..+.+...+..++++ ++++++++
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~~~~~~ 140 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE-GGRVQLIQ 140 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC-CCEEEEEE
Confidence 3589999999999633 2344555556666676 55777764
No 12
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.15 E-value=0.043 Score=51.43 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cccC--CcceeecCCCC
Q 028404 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG--SDFAFYDYNQP 160 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~~g--~~FvfYDyn~P 160 (209)
-|.++..++..+ ... ++.+|+=+||=+=.. .+.+..++..++-+|.+... ..+| -.++..|..++
T Consensus 229 Qd~~s~~~~~~l-~~~--~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~ 305 (427)
T PRK10901 229 QDAAAQLAATLL-APQ--NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 (427)
T ss_pred ECHHHHHHHHHc-CCC--CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 455555555554 332 678999998864333 33333444678899988743 2233 14666676653
Q ss_pred CCchHhh-cccccEEEECCCCCCH----------------------HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 161 QDLPLEL-KHAFSVVVVDPPYLSK----------------------ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 161 ~~lp~~l-k~~fD~Vv~DPPFlse----------------------ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
. ..+ .++||+|++|||+.+. ..+.++-.++..++++ |++|+.+|
T Consensus 306 ~---~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp-GG~lvyst 372 (427)
T PRK10901 306 A---QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP-GGTLLYAT 372 (427)
T ss_pred h---hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 2 222 3579999999998642 2345666666677787 56888776
No 13
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.87 E-value=0.11 Score=46.92 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-hh-Hhhh-cccCCCCcccccCcccccccccccChHHHHHHHHHHHhhcCCCC-CeEEEE
Q 028404 43 PMLSSQALAALQEFLSEQNQ-TS-ETAQ-NKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSD-SRVACI 118 (209)
Q Consensus 43 ~~LSa~tLaAL~eF~~E~~~-~~-~~f~-~~~~~~~~~~~~~~EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~-~rIacl 118 (209)
..|+....+.+.+++..|.. ++ -++- ...+-.. +.=...-.=|+=..+|...+...+........ .+|+=+
T Consensus 66 ~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g-----~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDl 140 (307)
T PRK11805 66 ARLTPSEKARILELIERRINERIPAAYLTNEAWFCG-----LEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDL 140 (307)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcC-----cEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEE
Confidence 36888888889999888863 32 1111 0000000 00000011133334566666665543322122 689888
Q ss_pred eCchHHH--HHHhhCCCCCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEECCCCCCHH
Q 028404 119 ACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (209)
Q Consensus 119 stPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (209)
||=|=.. .+.+..|..+++.+|++..--. .+ + +|+.-|..++ +| .++||+||++|||....
T Consensus 141 G~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~---~~~fDlIvsNPPyi~~~ 215 (307)
T PRK11805 141 CTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LP---GRRYDLIVSNPPYVDAE 215 (307)
T ss_pred echhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CC---CCCccEEEECCCCCCcc
Confidence 8875444 4444467778999999864332 22 1 3444454332 22 24799999999998642
Q ss_pred -------------------------HHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 185 -------------------------CLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 185 -------------------------c~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+..++...+..++++ ++++++-+|
T Consensus 216 ~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~E~g 264 (307)
T PRK11805 216 DMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVVEVG 264 (307)
T ss_pred chhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 234445555556666 557777655
No 14
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.59 E-value=0.085 Score=47.58 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred cccChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccccc--------ccCC---cceeecC
Q 028404 90 FWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYGS---DFAFYDY 157 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~-~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~--------~~g~---~FvfYDy 157 (209)
|+....-...|+..++..+. .++.+|+=++|=|=...+.....+.+++-.|+|.+.. .+|- +++..|.
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~ 239 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA 239 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch
Confidence 44433333445555555432 1456776544443332222222356899999998643 2331 4556666
Q ss_pred CCCCCchHhhcccccEEEECCCCCCHH---------HHHHHHHHHHHhcCCCCCcEEEe
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPYLSKE---------CLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlsee---------c~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+ +|.. .++||+||+||||+... -..++-..+..++++ ++++++.
T Consensus 240 ~~---l~~~-~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~-gG~lv~~ 293 (329)
T TIGR01177 240 TK---LPLS-SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS-EGWIVYA 293 (329)
T ss_pred hc---CCcc-cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC-CcEEEEE
Confidence 53 2211 46899999999997532 124444445555566 4455543
No 15
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.57 E-value=0.14 Score=41.77 Aligned_cols=105 Identities=17% Similarity=0.298 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------CC---cceeecCCCC
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------GS---DFAFYDYNQP 160 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g~---~FvfYDyn~P 160 (209)
+.....|++.+... ..++|+=+||=|=... +.+..|..+++..|++.+--.. +- +++.-|.-++
T Consensus 17 d~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT
T ss_pred CHHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence 34566888888877 5689999999865443 4444666679999999865433 11 2445565444
Q ss_pred CCchHhhcccccEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 161 QDLPLELKHAFSVVVVDPPYLSK-----ECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlse-----ec~~K~A~Tik~L~k~~~~kiilc 207 (209)
. + .++||+||+.|||..- +.+.++-.-.+.++++ +++++++
T Consensus 94 ~--~---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~-~G~l~lv 139 (170)
T PF05175_consen 94 L--P---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP-GGRLFLV 139 (170)
T ss_dssp C--C---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred c--c---ccceeEEEEccchhcccccchhhHHHHHHHHHHhccC-CCEEEEE
Confidence 2 2 4789999999999532 3566766666777776 4566543
No 16
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.51 E-value=0.2 Score=44.31 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCcccccCcccccccccccChHH------HHHHHHHHHhhc--CCCCCeE
Q 028404 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVT------AETVAQEAVSLC--SDSDSRV 115 (209)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~f~~~~~~~~~~~~~~~EDwqlSQFWYSd~T------a~~La~~l~~~a--~~~~~rI 115 (209)
.||.+..+.++++...|.+++ ..+ -+-...+=|.+ .|+.+..+ .+.|++.++... ..+..+|
T Consensus 49 ~l~~~~~~~~~~~~~~r~~~~-pl~--------yi~g~~~f~g~-~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~v 118 (284)
T TIGR00536 49 ELTPDEKERIFRLVLRRVKGV-PVA--------YLLGSKEFYGL-EFFVNEHVLIPRPETEELVEKALASLISQNPILHI 118 (284)
T ss_pred CCCHHHHHHHHHHHHHHHcCC-CHH--------HHhCcceEcCe-EEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEE
Confidence 588888888888888776652 111 00001111111 22222221 233444444321 1122688
Q ss_pred EEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEECCCCC
Q 028404 116 ACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL 181 (209)
Q Consensus 116 aclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (209)
+=|||=|=.. .+....+..+++.+|++..-.. ++ . +|+.-|.-++ ++. .+||+||++|||.
T Consensus 119 LDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~---~~fDlIvsNPPyi 193 (284)
T TIGR00536 119 LDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAG---QKIDIIVSNPPYI 193 (284)
T ss_pred EEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcC---CCccEEEECCCCC
Confidence 8777765444 4555456678999999873221 11 1 3444444333 221 2799999999998
Q ss_pred CHH-------------------------HHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 182 SKE-------------------------CLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 182 see-------------------------c~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
... +..++...+..++++ ++.|++-+|
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP-NGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-CCEEEEEEC
Confidence 753 334455555556666 456777665
No 17
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.50 E-value=0.76 Score=40.96 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHHHh-hh-Hhhh-cccCCCCcccccCcccccccccccChHHHHHHHHHHHhhcC-CCCCeEEEEe
Q 028404 44 MLSSQALAALQEFLSEQNQ-TS-ETAQ-NKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIA 119 (209)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~-~~-~~f~-~~~~~~~~~~~~~~EDwqlSQFWYSd~Ta~~La~~l~~~a~-~~~~rIacls 119 (209)
.|+.+..+.+.+++..|.. ++ -++- .+.+ +..+.=...-.=|+=..+|...+...+..... .+..+|+=+|
T Consensus 55 ~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~-----f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG 129 (284)
T TIGR03533 55 RLTPSEKERILELIERRIEERIPVAYLTNEAW-----FAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLC 129 (284)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcHHHHcCCCe-----ecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEe
Confidence 5778877888888887753 31 1111 0000 00000001112234344566666665543321 1356898888
Q ss_pred CchHH--HHHHhhCCCCCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 120 CPTLY--AYLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 120 tPSly--~~Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
|=|=. ..+.+..++.+++.+|++..--. +| . +|+.-|..++ ++ ..+||+||++|||...
T Consensus 130 ~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~---~~~fD~Iv~NPPy~~~ 202 (284)
T TIGR03533 130 TGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LP---GRKYDLIVSNPPYVDA 202 (284)
T ss_pred CchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cC---CCCccEEEECCCCCCc
Confidence 87544 34555566778999999864421 22 1 3555555443 22 2479999999999864
No 18
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.21 E-value=0.22 Score=47.79 Aligned_cols=110 Identities=16% Similarity=0.297 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cCC--cceeecCCCCCC
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YGS--DFAFYDYNQPQD 162 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g~--~FvfYDyn~P~~ 162 (209)
...+.|++.++.... ++.+|+=|||=|=.. .+.+..+..+++.+|++..--. .+. .|+.=|+.++.
T Consensus 236 peTE~LVe~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~- 313 (423)
T PRK14966 236 PETEHLVEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD- 313 (423)
T ss_pred ccHHHHHHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc-
Confidence 344566776665544 457899999986554 3444457778999999875432 221 34444553331
Q ss_pred chHhhcccccEEEECCCCCCH-------------------------HHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 163 LPLELKHAFSVVVVDPPYLSK-------------------------ECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlse-------------------------ec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+| ..++||+||++|||... ++..++...+...+++ ++.+++-.|
T Consensus 314 l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp-gG~lilEiG 382 (423)
T PRK14966 314 MP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE-GGFLLLEHG 382 (423)
T ss_pred cc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC-CcEEEEEEC
Confidence 22 13579999999999642 3455666666666776 446666554
No 19
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.02 E-value=0.062 Score=53.76 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=67.6
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhC-CCCCceEEeecccccccCC------------
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIR-PEVSPKILEYDMRFEQYGS------------ 150 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~-~~~~~~LLE~D~RF~~~g~------------ 150 (209)
+.|.--|+.+.+..+.++..+. .+++|+-|+|=|=...+.-.. ...+++-+|++.+--....
T Consensus 516 ~~~~tG~flDqr~~R~~~~~~~-----~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~ 590 (702)
T PRK11783 516 DYLDTGLFLDHRPTRRMIGQMA-----KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQ 590 (702)
T ss_pred CCCcceECHHHHHHHHHHHHhc-----CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 4555567777766555544432 357999999886666554322 2236899999976543321
Q ss_pred -cceeecCCCCCCchHhhcccccEEEECCCCCCHH-----------HHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE-----------CLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee-----------c~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+|+.=|..+ +...+.++||+||+|||+.... -..++...+..++++ ++.|++||.
T Consensus 591 v~~i~~D~~~---~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~-gG~l~~~~~ 657 (702)
T PRK11783 591 HRLIQADCLA---WLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP-GGTLYFSNN 657 (702)
T ss_pred eEEEEccHHH---HHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC-CCEEEEEeC
Confidence 233333221 1122356899999999997531 112333444445565 457777763
No 20
>PRK14968 putative methyltransferase; Provisional
Probab=94.94 E-value=0.23 Score=39.60 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=42.4
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-------------CcceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-------------SDFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-------------~~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
++.+|+=+||-+=+. .+.+. +.+++.+|++....... -.|+..|..++ ++ ..+||+|+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~---~~~~d~vi 95 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FR---GDKFDVIL 95 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--cc---ccCceEEE
Confidence 567899999885544 33332 56889999987554321 13455555443 22 23799999
Q ss_pred ECCCCCC
Q 028404 176 VDPPYLS 182 (209)
Q Consensus 176 ~DPPFls 182 (209)
++|||..
T Consensus 96 ~n~p~~~ 102 (188)
T PRK14968 96 FNPPYLP 102 (188)
T ss_pred ECCCcCC
Confidence 9999976
No 21
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.60 E-value=0.35 Score=44.60 Aligned_cols=99 Identities=11% Similarity=0.243 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchH--HHHHHhhCCCCCceEEeecc--------cccccC--CcceeecCCCCCCchH
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDM--------RFEQYG--SDFAFYDYNQPQDLPL 165 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~--------RF~~~g--~~FvfYDyn~P~~lp~ 165 (209)
+.|.+.+... ..++|+=+||=+= -..+.+..|..+++++|++. ++...+ .+++.-|.-.
T Consensus 186 ~lLl~~l~~~---~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~------ 256 (342)
T PRK09489 186 QLLLSTLTPH---TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS------ 256 (342)
T ss_pred HHHHHhcccc---CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc------
Confidence 4444444332 2457887777643 34455556777899999995 232222 1343334322
Q ss_pred hhcccccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 166 ELKHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 166 ~lk~~fD~Vv~DPPFls-----eec~~K~A~Tik~L~k~~~~kiil 206 (209)
.+.++||+||++|||-. .++.+.+-..+...+++ ++++++
T Consensus 257 ~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp-gG~L~i 301 (342)
T PRK09489 257 DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS-GGELRI 301 (342)
T ss_pred ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc-CCEEEE
Confidence 23578999999999963 44555555555555665 345544
No 22
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.96 E-value=0.042 Score=52.18 Aligned_cols=42 Identities=40% Similarity=0.724 Sum_probs=27.5
Q ss_pred ccccCC--cc---eeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHH
Q 028404 145 FEQYGS--DF---AFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKV 189 (209)
Q Consensus 145 F~~~g~--~F---vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~ 189 (209)
|++||. .| +--|+++|- +-. +-.||.|||||||+-+|--+|+
T Consensus 257 FkQYg~~~~fldvl~~D~sn~~-~rs--n~~fDaIvcDPPYGVRe~~rk~ 303 (421)
T KOG2671|consen 257 FKQYGSSSQFLDVLTADFSNPP-LRS--NLKFDAIVCDPPYGVREGARKT 303 (421)
T ss_pred HHHhCCcchhhheeeecccCcc-hhh--cceeeEEEeCCCcchhhhhhhh
Confidence 677763 23 356777662 111 4469999999999999754443
No 23
>PHA03412 putative methyltransferase; Provisional
Probab=93.92 E-value=0.49 Score=42.36 Aligned_cols=94 Identities=12% Similarity=0.195 Sum_probs=63.0
Q ss_pred ccCcccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--Hhh---CCCCCceEEeecccccccC----
Q 028404 79 ALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI---RPEVSPKILEYDMRFEQYG---- 149 (209)
Q Consensus 79 ~~~~EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~---~~~~~~~LLE~D~RF~~~g---- 149 (209)
..+.+.+.+-||+=-...++.++- ... .+.+|+=+||=|=-..+ .+. .+..+++.+|+|.+-....
T Consensus 22 ~~~~~~~~~GqFfTP~~iAr~~~i---~~~--~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 22 GAFTNNSELGAFFTPIGLARDFTI---DAC--TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred ccccccccCCccCCCHHHHHHHHH---hcc--CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 467899999999888887776642 222 35789888888655543 222 1345899999999765442
Q ss_pred --CcceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 150 --SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 150 --~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
.+++.=|+.... +.++||+||..|||..
T Consensus 97 ~~~~~~~~D~~~~~-----~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 97 PEATWINADALTTE-----FDTLFDMAISNPPFGK 126 (241)
T ss_pred cCCEEEEcchhccc-----ccCCccEEEECCCCCC
Confidence 144554554321 2468999999999994
No 24
>PRK11524 putative methyltransferase; Provisional
Probab=93.49 E-value=0.14 Score=45.39 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=12.8
Q ss_pred cccccEEEECCCCCC
Q 028404 168 KHAFSVVVVDPPYLS 182 (209)
Q Consensus 168 k~~fD~Vv~DPPFls 182 (209)
.+++|+||+||||..
T Consensus 25 ~~siDlIitDPPY~~ 39 (284)
T PRK11524 25 SESVDLIFADPPYNI 39 (284)
T ss_pred cCcccEEEECCCccc
Confidence 368999999999963
No 25
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.46 E-value=0.6 Score=31.57 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=33.5
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCC-HHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS-KECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls-eec~~K~A~Tik~L~k~~~~kiil 206 (209)
.|+..|...+.. ...+++|+|++++|+.. .+-...+-..+..++++ ++.+++
T Consensus 50 ~~~~~~~~~~~~---~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~-~g~~~~ 102 (107)
T cd02440 50 EVLKGDAEELPP---EADESFDVIISDPPLHHLVEDLARFLEEARRLLKP-GGVLVL 102 (107)
T ss_pred EEEEcChhhhcc---ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCC-CCEEEE
Confidence 455555544432 12467999999999987 65566666666666676 445554
No 26
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=93.15 E-value=0.56 Score=44.13 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=52.5
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhh-CCCCCceEEeecccc--------cccC-C--ccee
Q 028404 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRF--------EQYG-S--DFAF 154 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF--------~~~g-~--~Fvf 154 (209)
.|+-.+.+...++..+ ... ++.+|+=+||=+=.. .+.+. .+..+++-+|++..- ..+| + +|+.
T Consensus 231 ~~~~qd~~s~lv~~~l-~~~--~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~ 307 (444)
T PRK14902 231 LITIQDESSMLVAPAL-DPK--GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKA 307 (444)
T ss_pred eEEEEChHHHHHHHHh-CCC--CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3555666666666554 332 567888787764333 33332 245689999997642 2233 1 4566
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
-|..+. +..+.++||+|++|||+-+
T Consensus 308 ~D~~~~---~~~~~~~fD~Vl~D~Pcsg 332 (444)
T PRK14902 308 LDARKV---HEKFAEKFDKILVDAPCSG 332 (444)
T ss_pred CCcccc---cchhcccCCEEEEcCCCCC
Confidence 666542 2233478999999999653
No 27
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=93.13 E-value=0.49 Score=44.75 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=51.8
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhh-CCCCCceEEeeccccc--------ccC-C--cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFE--------QYG-S--DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~RF~--------~~g-~--~FvfY 155 (209)
|++-+..+ .++-.++... ++.+|+=+||=+=... +... .++.+++-+|.+..-- .+| . +++.-
T Consensus 219 ~~~Qd~~s-~~~~~~l~~~--~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~ 295 (431)
T PRK14903 219 ATVQGESS-QIVPLLMELE--PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIA 295 (431)
T ss_pred EEEECHHH-HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 44444444 4444454442 5778988888754433 2222 2345788888876432 222 1 45555
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
|... ++..+.++||+|++|||..+.
T Consensus 296 Da~~---l~~~~~~~fD~Vl~DaPCsg~ 320 (431)
T PRK14903 296 DAER---LTEYVQDTFDRILVDAPCTSL 320 (431)
T ss_pred chhh---hhhhhhccCCEEEECCCCCCC
Confidence 6543 344456789999999999543
No 28
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.04 E-value=0.69 Score=43.34 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=65.3
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccc--------cccCC--ccee
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYGS--DFAF 154 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF--------~~~g~--~Fvf 154 (209)
.-+|+--|..+..++..+. .. ++.+|+=+||=+=+.. +-+..+..+++-+|.+.+. ..+|- +..+
T Consensus 217 ~G~~~~Qd~~s~~~~~~L~-~~--~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~ 293 (426)
T TIGR00563 217 EGWVTVQDASAQWVATWLA-PQ--NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAET 293 (426)
T ss_pred CCeEEEECHHHHHHHHHhC-CC--CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 3345556666666666553 21 5678988888644433 2232344578999998743 22331 2223
Q ss_pred ecCCCCCCchHh-hcccccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEec
Q 028404 155 YDYNQPQDLPLE-LKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 155 YDyn~P~~lp~~-lk~~fD~Vv~DPPFlseec----------------------~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+..... ++.. -.++||+|++|||.-+.-. +.++-..+..++|+ |++|+.+|
T Consensus 294 ~~~d~~~-~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvyst 368 (426)
T TIGR00563 294 KDGDGRG-PSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYAT 368 (426)
T ss_pred ecccccc-ccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 4432211 1111 1357999999999776322 23444445556676 56788765
No 29
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=93.01 E-value=0.47 Score=44.65 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=62.4
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhh-CCCCCceEEeeccc--------ccccC-C--cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMR--------FEQYG-S--DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~R--------F~~~g-~--~FvfY 155 (209)
|+.-|..+..++..+ ... ++.+|+=+||=+=... |... .+...++-+|.+.. ...+| . .++.-
T Consensus 234 ~~~qd~~s~l~~~~l-~~~--~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~ 310 (434)
T PRK14901 234 WTVQDRSAQLVAPLL-DPQ--PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAA 310 (434)
T ss_pred EEEECHHHHHHHHHh-CCC--CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 334455555555544 332 5678888887754432 2222 23347888888762 22233 1 44555
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEec
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|............++||+|++|||.-+... +.++-..+..++|+ +++|+.+|
T Consensus 311 D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp-gG~lvyst 384 (434)
T PRK14901 311 DSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP-GGTLVYAT 384 (434)
T ss_pred ChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 554321111123468999999999754221 23444444555566 56788665
No 30
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.97 E-value=0.55 Score=45.46 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 112 DSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 112 ~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
..+|+=|||=|=... +.+..|..+++.+|++..-- .++ + .|+.-|+-.+ ++ .++||+||++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~---~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IE---KQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--Cc---CCCccEEEEC
Confidence 357888888865543 44445777899999986332 222 1 2333343222 21 3579999999
Q ss_pred CCCCCHH--------------------------HHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 178 PPYLSKE--------------------------CLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 178 PPFlsee--------------------------c~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
|||+..+ +..++...+..++++ ++.+++..|
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~-gG~l~lEig 270 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP-NGKIILEIG 270 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC-CCEEEEEEC
Confidence 9999732 233344455556666 457877665
No 31
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=91.90 E-value=0.094 Score=44.20 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=16.7
Q ss_pred cccccEEEECCCCCCHHHHHHHHHHHHHhc
Q 028404 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLA 197 (209)
Q Consensus 168 k~~fD~Vv~DPPFlseec~~K~A~Tik~L~ 197 (209)
..+||+|++||||....- +..++..|.
T Consensus 112 ~~~fDiIflDPPY~~~~~---~~~~l~~l~ 138 (183)
T PF03602_consen 112 GEKFDIIFLDPPYAKGLY---YEELLELLA 138 (183)
T ss_dssp TS-EEEEEE--STTSCHH---HHHHHHHHH
T ss_pred CCCceEEEECCCcccchH---HHHHHHHHH
Confidence 357999999999998863 344455554
No 32
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=91.63 E-value=0.23 Score=41.33 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=24.5
Q ss_pred ceEEeecccccc--------cC-C---cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 136 PKILEYDMRFEQ--------YG-S---DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 136 ~~LLE~D~RF~~--------~g-~---~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
++-.|+|.+--. +| + +|...|+.+ +| ...+++|+||+||||+-+
T Consensus 64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~---l~-~~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE---LP-LPDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG---GG-GTTSBSCEEEEE--STTS
T ss_pred EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh---cc-cccCCCCEEEECcchhhh
Confidence 667777775421 11 1 344555543 33 334689999999999965
No 33
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.33 E-value=0.23 Score=42.85 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=11.7
Q ss_pred cccEEEECCCCCC
Q 028404 170 AFSVVVVDPPYLS 182 (209)
Q Consensus 170 ~fD~Vv~DPPFls 182 (209)
.||+|++||||..
T Consensus 114 ~FDlVflDPPy~~ 126 (187)
T COG0742 114 PFDLVFLDPPYAK 126 (187)
T ss_pred cccEEEeCCCCcc
Confidence 4999999999993
No 34
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=91.02 E-value=1.6 Score=36.42 Aligned_cols=108 Identities=15% Similarity=0.070 Sum_probs=63.5
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccc--------ccC--C-cc
Q 028404 86 RLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S-DF 152 (209)
Q Consensus 86 qlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~--------~~g--~-~F 152 (209)
+..|+|-+......+...+. . . ++.+|+=|||-+=|.. |.+.. .+++.+|++.... .+| . ++
T Consensus 56 ~~~~~~~~p~~~~~l~~~l~-~-~-~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~ 130 (212)
T PRK00312 56 GCGQTISQPYMVARMTELLE-L-K-PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSV 130 (212)
T ss_pred CCCCeeCcHHHHHHHHHhcC-C-C-CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEE
Confidence 34577777777777665442 2 1 5789999999876653 33322 3688888885442 222 1 34
Q ss_pred eeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.-|..++ ++. .++||+|+++.++-.- -..+.-++++ +++|++..|
T Consensus 131 ~~~d~~~~--~~~--~~~fD~I~~~~~~~~~------~~~l~~~L~~-gG~lv~~~~ 176 (212)
T PRK00312 131 RHGDGWKG--WPA--YAPFDRILVTAAAPEI------PRALLEQLKE-GGILVAPVG 176 (212)
T ss_pred EECCcccC--CCc--CCCcCEEEEccCchhh------hHHHHHhcCC-CcEEEEEEc
Confidence 44554332 221 2679999999876432 2233445555 457776543
No 35
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=90.37 E-value=0.5 Score=41.48 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=61.6
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--Hhh-CCCCCceEEeeccccc--------ccC-C--cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRFE--------QYG-S--DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~-~~~~~~~LLE~D~RF~--------~~g-~--~FvfY 155 (209)
++|-.+-+..++-.++... ++.+|+=+||-+=...+ ... .....++-+|.+.+.. ..| . +++.-
T Consensus 52 ~~~~qd~~s~~~~~~l~~~--~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~ 129 (264)
T TIGR00446 52 LYYIQEASSMIPPLALEPD--PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF 129 (264)
T ss_pred eEEEECHHHHHHHHHhCCC--CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC
Confidence 3554455556665555542 56788888887544432 222 2234688888886432 222 1 23334
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEec
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|... ++. ..+.||+||+|||.-+... +.++-..+..++|+ +++|+.+|
T Consensus 130 D~~~---~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvYst 199 (264)
T TIGR00446 130 DGRV---FGA-AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP-GGVLVYST 199 (264)
T ss_pred CHHH---hhh-hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 4321 221 2346999999999875421 22333344445566 56888876
No 36
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.12 E-value=1.6 Score=38.27 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=65.3
Q ss_pred ccCcc-cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeecccccc--------c
Q 028404 79 ALVSE-DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQ--------Y 148 (209)
Q Consensus 79 ~~~~E-DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~--------~ 148 (209)
..|.+ +-.|.||=-..+.+..|+-.+......+++.|+=+||=|=--.+-.. ..-..++-+|.|..=.. +
T Consensus 12 ~~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l 91 (198)
T COG2263 12 KGFPNPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL 91 (198)
T ss_pred cCCCCCCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh
Confidence 34443 45799999999999998888865544466779888877544433322 12247899999985432 2
Q ss_pred CC--cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 149 GS--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 149 g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
++ +|+-=|-. ++.+.+|.||++|||++.
T Consensus 92 ~g~v~f~~~dv~-------~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 92 LGDVEFVVADVS-------DFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCceEEEEcchh-------hcCCccceEEECCCCccc
Confidence 22 44444443 346789999999999985
No 37
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=90.00 E-value=0.21 Score=36.96 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=27.6
Q ss_pred CCCceEEeeccccccc--------C--C--cceeecCCCCCCchHhh-cccccEEEECCCCCCH
Q 028404 133 EVSPKILEYDMRFEQY--------G--S--DFAFYDYNQPQDLPLEL-KHAFSVVVVDPPYLSK 183 (209)
Q Consensus 133 ~~~~~LLE~D~RF~~~--------g--~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~DPPFlse 183 (209)
..+++.+|+|.+.... + + +++.-|+.. ++..+ .++||+||+||||...
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARD---LPEPLPDGKFDLIVTNPPYGPR 83 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHH---HHHTCTTT-EEEEEE--STTSB
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhh---chhhccCceeEEEEECCCCccc
Confidence 4678888888755332 1 1 445555532 22222 4689999999999964
No 38
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.41 E-value=0.25 Score=46.43 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=58.5
Q ss_pred ccccccccChHHHHHHHHHHHhhcCC-CCCeEE--EEeCchHHHHHHhhCCCCCceEEeeccc--------ccccC-Ccc
Q 028404 85 WRLSQFWYDAVTAETVAQEAVSLCSD-SDSRVA--CIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG-SDF 152 (209)
Q Consensus 85 wqlSQFWYSd~Ta~~La~~l~~~a~~-~~~rIa--clstPSly~~Lk~~~~~~~~~LLE~D~R--------F~~~g-~~F 152 (209)
-..-+|+.....--.||+.+.+++.. .+..|+ |.||=++-...-- -+.+++=-|+|.| +..|+ ++|
T Consensus 170 ~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~ 247 (347)
T COG1041 170 PEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDY 247 (347)
T ss_pred cccCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCce
Confidence 34447887766666677777666541 345665 6677776543322 2345555566654 33343 356
Q ss_pred eeecCCCCCCchHhhccc-ccEEEECCCCCCH
Q 028404 153 AFYDYNQPQDLPLELKHA-FSVVVVDPPYLSK 183 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk~~-fD~Vv~DPPFlse 183 (209)
.++..-.-.++| |+.+ +|-|++||||+-.
T Consensus 248 ~~~~~~Da~~lp--l~~~~vdaIatDPPYGrs 277 (347)
T COG1041 248 PVLKVLDATNLP--LRDNSVDAIATDPPYGRS 277 (347)
T ss_pred eEEEecccccCC--CCCCccceEEecCCCCcc
Confidence 677764455566 6554 9999999999964
No 39
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=89.41 E-value=2.7 Score=39.68 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhh-CCCCCceEEeeccccc--------ccC-C--cceeecCCC
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQ 159 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~ 159 (209)
+.+.. ++-.++... ++.+|+=+||=+=+.. +.+. ....+++-+|.+..-- ..| . +++..|...
T Consensus 236 d~~s~-l~~~~l~~~--~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~ 312 (445)
T PRK14904 236 NPTQA-LACLLLNPQ--PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS 312 (445)
T ss_pred CHHHH-HHHHhcCCC--CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc
Confidence 34443 444444432 5789999999765543 2222 2234788888887432 222 1 455556543
Q ss_pred CCCchHhhcccccEEEECCCCCCHH----------------------HHHHHHHHHHHhcCCCCCcEEEec
Q 028404 160 PQDLPLELKHAFSVVVVDPPYLSKE----------------------CLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPFlsee----------------------c~~K~A~Tik~L~k~~~~kiilcT 208 (209)
. + -..+||+|++|||..+.- -+.++-..+..++++ +++|+.+|
T Consensus 313 ~---~--~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvyst 377 (445)
T PRK14904 313 F---S--PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP-GGVLVYAT 377 (445)
T ss_pred c---c--cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 2 1 125799999999985421 122344445555666 56888877
No 40
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=89.07 E-value=0.22 Score=45.24 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=58.9
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeecccccccC-----------C-
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQYG-----------S- 150 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~~g-----------~- 150 (209)
+-|..-|+.+.+-.+..+.... .+++|+-+-|=|=-+.+... ..-..++-+|...+.-..+ +
T Consensus 101 ~gqktGlFlDqR~nR~~v~~~~-----~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 101 DGQKTGLFLDQRENRKWVRKYA-----KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSSTSS-GGGHHHHHHHHHHC-----TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCCcceEcHHHHhhHHHHHHHc-----CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 4566779999888887766642 46899987655333333221 1224688888888765432 1
Q ss_pred -cceeecCCCCCCchHhh--cccccEEEECCCCCCHH------HHHHHHHHHHHhcCCCCCcEEEec
Q 028404 151 -DFAFYDYNQPQDLPLEL--KHAFSVVVVDPPYLSKE------CLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~l--k~~fD~Vv~DPPFlsee------c~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|+..|-- +.-..+ .++||+||+|||=.... =..++...+-.|+++ ++.|++||
T Consensus 176 ~~~~~~Dvf---~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~-gG~l~~~s 238 (286)
T PF10672_consen 176 HRFIQGDVF---KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKP-GGLLLTCS 238 (286)
T ss_dssp EEEEES-HH---HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred eEEEecCHH---HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCEEEEEc
Confidence 23333311 011122 35899999999954321 112223323333344 45688776
No 41
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=88.84 E-value=1.4 Score=39.47 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhh-Hhhh-cccCCCCcccccCcccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeC
Q 028404 43 PMLSSQALAALQEFLSEQNQTS-ETAQ-NKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIAC 120 (209)
Q Consensus 43 ~~LSa~tLaAL~eF~~E~~~~~-~~f~-~~~~~~~~~~~~~~EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclst 120 (209)
..|+.+.+..+.+-...|.++. -++- . ......+.-.=...-|-..++|-..+-..+..... ...+|+=|||
T Consensus 46 ~~~~~~~~~~~~~~~~rr~~~~P~~yi~g-----~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~-~~~~ilDlGT 119 (280)
T COG2890 46 AELSEEELERLRELLERRAEGEPVAYILG-----SAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ-LDKRILDLGT 119 (280)
T ss_pred cccCHHHHHHHHHHHHHHHCCCCHhHhhc-----cCeecceeeeeCCCceecCCchHHHHHHHHHhhhh-cCCcEEEecC
Confidence 4677788887777776663332 1110 0 00111222222334455667776655554322211 1126877777
Q ss_pred chHHH--HHHhhCCCCCceEEeeccccc--------ccC-CcceeecCCCCCCchHhhcccccEEEECCCCCCHH
Q 028404 121 PTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (209)
Q Consensus 121 PSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (209)
=|=.. .+.+..|..+++-.|+..+=- .+| .++.+..- ++-+.++++||+||+-|||+..+
T Consensus 120 GSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~----dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 120 GSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS----DLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred ChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee----ecccccCCceeEEEeCCCCCCCc
Confidence 76554 555656777899999987211 122 22222221 23334567999999999999986
No 42
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=88.81 E-value=0.57 Score=40.10 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCCeEEEEeCchHHHHHHhh-CCCCCceEEeeccccccc--------C-C--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
++.+|+=++|-|=...+.-. ....+++.+|.|.+.... + . .|+.=|..+. ++ ....+||+||+||
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~--l~-~~~~~fDlV~~DP 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF--LA-QPGTPHNVVFVDP 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH--Hh-hcCCCceEEEECC
Confidence 45678777777555444211 112478888888876432 1 1 2222232211 11 1234699999999
Q ss_pred CCCC
Q 028404 179 PYLS 182 (209)
Q Consensus 179 PFls 182 (209)
||..
T Consensus 130 Py~~ 133 (199)
T PRK10909 130 PFRK 133 (199)
T ss_pred CCCC
Confidence 9965
No 43
>PRK00811 spermidine synthase; Provisional
Probab=87.68 E-value=2.7 Score=37.49 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccCCcce-eec---CCCCC------CchHh---hcccccEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYGSDFA-FYD---YNQPQ------DLPLE---LKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g~~Fv-fYD---yn~P~------~lp~~---lk~~fD~Vv 175 (209)
+.++|+.||+=.-.. .+.+..+..++.++|+|...-....+|. .+. +..|. +.-.. ..++||+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 568999999974332 2323223458999999986544321111 110 01111 00111 246899999
Q ss_pred EC--CCCCCHHHH--HHHHHHHHHhcCCCCCcEEE
Q 028404 176 VD--PPYLSKECL--EKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 176 ~D--PPFlseec~--~K~A~Tik~L~k~~~~kiil 206 (209)
+| +|+....-+ +..-+.++.++++ ++.+++
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~-gGvlv~ 189 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKE-DGIFVA 189 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEE
Confidence 99 566432111 1222344555666 444554
No 44
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=87.63 E-value=3.8 Score=38.62 Aligned_cols=110 Identities=9% Similarity=0.149 Sum_probs=60.1
Q ss_pred cChHHHHHHHHHHHhhcCC-CCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccccc--------C-C-----ccee
Q 028404 92 YDAVTAETVAQEAVSLCSD-SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY--------G-S-----DFAF 154 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~-~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~--------g-~-----~Fvf 154 (209)
||.+....=.+.+++.... ..++|+=|||=+ |-..+.+..|..+++.+|.+.+--.. + + +|+.
T Consensus 208 Fs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 208 FSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred cCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 4444444434444444421 245888777764 44455555788899999999643221 1 0 2222
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFls-----eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
=|.-.. ++ .++||+||+.|||-. .+-..++-..++..+++ ++++++.
T Consensus 288 ~D~l~~--~~---~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp-GG~L~iV 339 (378)
T PRK15001 288 NNALSG--VE---PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIV 339 (378)
T ss_pred cccccc--CC---CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc-CCEEEEE
Confidence 222111 11 247999999999953 23234444445556666 4466654
No 45
>PHA03411 putative methyltransferase; Provisional
Probab=87.14 E-value=1.4 Score=40.23 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=54.1
Q ss_pred cCccc--ccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeecccccccC-----C
Q 028404 80 LVSED--WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYG-----S 150 (209)
Q Consensus 80 ~~~ED--wqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~g-----~ 150 (209)
.+.+| ...-||+=-+..+..++ .... ..++|+=+||=+ +-..+.+..+..+++.+|++.+..... .
T Consensus 36 ~~~g~~~~~~G~FfTP~~i~~~f~---~~~~--~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~ 110 (279)
T PHA03411 36 NYHGDGLGGSGAFFTPEGLAWDFT---IDAH--CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPE 110 (279)
T ss_pred hcccccccCceeEcCCHHHHHHHH---hccc--cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcC
Confidence 44444 22368877766664442 2221 346787666543 322333333456899999999887642 1
Q ss_pred -cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+++.=|+.+. + ...+||+||++|||..
T Consensus 111 v~~v~~D~~e~---~--~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 111 AEWITSDVFEF---E--SNEKFDVVISNPPFGK 138 (279)
T ss_pred CEEEECchhhh---c--ccCCCcEEEEcCCccc
Confidence 3333344322 1 1357999999999986
No 46
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=85.97 E-value=3.2 Score=36.44 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccccCCcce-eec--CCCCC------C---chHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYGSDFA-FYD--YNQPQ------D---LPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~g~~Fv-fYD--yn~P~------~---lp~~lk~~fD~Vv~ 176 (209)
+.++|+.||+-+-. ..+.+..+..++.+.|+|...-....+|. .+. ++.|. + +-....++||+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999987533 22322223468999999976532211111 110 11110 1 00112468999999
Q ss_pred CCCCCCHHH----HHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKEC----LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec----~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|+|...... ...+-+-++.++++ ++.+++.+
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~p-gG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNE-DGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCC-CcEEEEcC
Confidence 998532111 01122334455565 45566543
No 47
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=85.80 E-value=5.9 Score=37.36 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccc--------cC-C--cceeecCCC
Q 028404 94 AVTAETVAQEAVSLCS-DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQ 159 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~-~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~ 159 (209)
....+.|++.+++... .++.+|+=++|=+=... |.+. ..+++-+|++..--. .+ + +|+.-|..+
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 3345677777777653 24568877777644433 3332 247888998874322 11 1 455555543
Q ss_pred CCCchH-hh-cccccEEEECCCCCCH
Q 028404 160 PQDLPL-EL-KHAFSVVVVDPPYLSK 183 (209)
Q Consensus 160 P~~lp~-~l-k~~fD~Vv~DPPFlse 183 (209)
. ++. .+ .++||+||+|||+.+.
T Consensus 357 ~--l~~~~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 357 D--FTDQPWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred h--hhhhhhhcCCCCEEEECcCCcCh
Confidence 2 221 12 3579999999999874
No 48
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=84.93 E-value=7.4 Score=31.85 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=53.7
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeecccccccCCcceeecCCCCCCch---Hhh-cccccEEEECC--CCC
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLP---LEL-KHAFSVVVVDP--PYL 181 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp---~~l-k~~fD~Vv~DP--PFl 181 (209)
++.+|+=|||=+-.. .+.+. .+..+++.+|++.-...-+-+|+..|..++..++ +.+ .++||+|++|+ ||.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~ 111 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNIS 111 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCC
Confidence 578999998875443 33333 2445789999987321112257777887653222 223 34699999994 443
Q ss_pred CHHH---------HHHHHHHHHHhcCCCCCcEEE
Q 028404 182 SKEC---------LEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 182 seec---------~~K~A~Tik~L~k~~~~kiil 206 (209)
+... ++++-..+..++++ ++++++
T Consensus 112 g~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lvi 144 (188)
T TIGR00438 112 GYWDIDHLRSIDLVELALDIAKEVLKP-KGNFVV 144 (188)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHccC-CCEEEE
Confidence 2211 13444445555566 456665
No 49
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=84.68 E-value=5.1 Score=37.09 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcC-CCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccccccc--------C-C--cceeecCCCCCC
Q 028404 95 VTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQD 162 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~-~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn~P~~ 162 (209)
...+.|.+.+.+.+. .++.+|+=++|=+=...+.-.....+++.+|+|..--.. + + +|+.-|..+.
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~-- 293 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKF-- 293 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH--
Confidence 455666666655432 135678767666544333221234578999998754321 1 1 2333333221
Q ss_pred chHhhcccccEEEECCCCCCHHHHHHHHHHHHHh
Q 028404 163 LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFL 196 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L 196 (209)
...+.++||+||+|||+-+- ..++..++..+
T Consensus 294 -~~~~~~~~D~vi~DPPr~G~--~~~~l~~l~~~ 324 (374)
T TIGR02085 294 -ATAQMSAPELVLVNPPRRGI--GKELCDYLSQM 324 (374)
T ss_pred -HHhcCCCCCEEEECCCCCCC--cHHHHHHHHhc
Confidence 11233469999999999753 24554444443
No 50
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=83.26 E-value=1.6 Score=36.75 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.0
Q ss_pred cccEEEECCCCCCH
Q 028404 170 AFSVVVVDPPYLSK 183 (209)
Q Consensus 170 ~fD~Vv~DPPFlse 183 (209)
.||+|+.||||...
T Consensus 121 ~~dvv~~DPPy~~~ 134 (189)
T TIGR00095 121 FDNVIYLDPPFFNG 134 (189)
T ss_pred CceEEEECcCCCCC
Confidence 38999999999864
No 51
>PRK03612 spermidine synthase; Provisional
Probab=83.21 E-value=4.8 Score=39.11 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=52.3
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCC-CCceEEeecccccccCC-cceeec-----CCCCC------C---chHhhccccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPE-VSPKILEYDMRFEQYGS-DFAFYD-----YNQPQ------D---LPLELKHAFS 172 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~-~~~~LLE~D~RF~~~g~-~FvfYD-----yn~P~------~---lp~~lk~~fD 172 (209)
+.++|+.||+=+=.. .+.+ .+. .++.++|+|...-.... +|.+-. ++.|. + .-.....+||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 568999999874332 2333 344 69999999986654421 111111 11221 1 1112246899
Q ss_pred EEEECCCCCCHH-H----HHHHHHHHHHhcCCCCCcEEEe
Q 028404 173 VVVVDPPYLSKE-C----LEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 173 ~Vv~DPPFlsee-c----~~K~A~Tik~L~k~~~~kiilc 207 (209)
+||+|+|.-... . -+..-+.++.++++ ++.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p-gG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP-DGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCC-CeEEEEe
Confidence 999999875421 0 01233456667776 4456553
No 52
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.89 E-value=3.2 Score=35.71 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=62.0
Q ss_pred cccccccccChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHHHHHhhCC-CCCceEEeeccc-----------ccccCC
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRP-EVSPKILEYDMR-----------FEQYGS 150 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~-~~~~rIaclstPSly~~Lk~~~~-~~~~~LLE~D~R-----------F~~~g~ 150 (209)
.--|.||=-+.+-+...+..|.+-.+ .++++|+=|||=.=--.+.--.+ ...++=||+|.- |++- -
T Consensus 20 k~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-i 98 (185)
T KOG3420|consen 20 KLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-I 98 (185)
T ss_pred chhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-h
Confidence 34688999999999998888877665 36777776666532222221112 235666888862 2211 1
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
+++.-|+-.++- -.+.||.+|++|||++.
T Consensus 99 dlLqcdildle~----~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 99 DLLQCDILDLEL----KGGIFDTAVINPPFGTK 127 (185)
T ss_pred heeeeeccchhc----cCCeEeeEEecCCCCcc
Confidence 677777766532 13789999999999986
No 53
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=82.59 E-value=8.8 Score=31.94 Aligned_cols=112 Identities=12% Similarity=0.172 Sum_probs=70.0
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------C-C-
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G-S- 150 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g-~- 150 (209)
|+.-..|||=. .|.+.|.+.+... ..++|+-|||=+=+.. |.+ .+.+++-+|++...-.. + .
T Consensus 6 ~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~vLDiGcG~G~~a~~la~--~g~~V~~iD~s~~~l~~a~~~~~~~~~~v 79 (195)
T TIGR00477 6 EDYFHKKYGMT-TTHSAVREAVKTV---APCKTLDLGCGQGRNSLYLSL--AGYDVRAWDHNPASIASVLDMKARENLPL 79 (195)
T ss_pred HHHHHHhhCCC-CchHHHHHHhccC---CCCcEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHhCCCc
Confidence 45556678877 6777777776544 4579999999755443 333 24589999998643321 1 1
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl--seec~~K~A~Tik~L~k~~~~kiil 206 (209)
.+...|...+ + +.++||+|++=.+|. +.+=+..+...+..++++ ++++++
T Consensus 80 ~~~~~d~~~~---~--~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lli 131 (195)
T TIGR00477 80 RTDAYDINAA---A--LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRP-GGYNLI 131 (195)
T ss_pred eeEeccchhc---c--ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCC-CcEEEE
Confidence 3445555432 1 245799999888874 333356677777777787 456443
No 54
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=82.37 E-value=11 Score=31.74 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=62.2
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhC-CCCCceEEeeccccc--------ccC--C-ccee
Q 028404 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIR-PEVSPKILEYDMRFE--------QYG--S-DFAF 154 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~-~~~~~~LLE~D~RF~--------~~g--~-~Fvf 154 (209)
|..-+..+...+.+.+. . . ++.+|+=|||=+=|..+ .+.. +..+++-+|++.... .+| . +|+.
T Consensus 58 ~~~~~p~~~~~~~~~l~-~-~-~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~ 134 (215)
T TIGR00080 58 QTISAPHMVAMMTELLE-L-K-PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV 134 (215)
T ss_pred CEechHHHHHHHHHHhC-C-C-CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE
Confidence 44445556666665543 2 1 67899999999777653 3332 234688999885433 332 1 4565
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-|..... +. .+.||+|+++++.-.. ...+..++++ +++|++-.
T Consensus 135 ~d~~~~~--~~--~~~fD~Ii~~~~~~~~------~~~~~~~L~~-gG~lv~~~ 177 (215)
T TIGR00080 135 GDGTQGW--EP--LAPYDRIYVTAAGPKI------PEALIDQLKE-GGILVMPV 177 (215)
T ss_pred CCcccCC--cc--cCCCCEEEEcCCcccc------cHHHHHhcCc-CcEEEEEE
Confidence 5654321 11 2579999999875332 2334445566 55777654
No 55
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=82.26 E-value=4.2 Score=34.05 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=48.2
Q ss_pred CCCeEEEEeCch--HHHHHHhhCCCCCceEEeecccccc--------cCC--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQ--------YGS--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~--------~g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
.+.+|+-|||-+ +-..+.+. ..+++..|.+.-... .+. +|+.-|.. .++....++||+|++.-
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAE---ELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHH---HhhhhcCCCccEEEEhh
Confidence 567899998863 32333332 346888888754422 111 23333332 23333347899999865
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 179 PYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 179 PFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+....-...+-..+..++++ ++.+++++
T Consensus 123 ~l~~~~~~~~~l~~~~~~L~~-gG~l~v~~ 151 (233)
T PRK05134 123 MLEHVPDPASFVRACAKLVKP-GGLVFFST 151 (233)
T ss_pred HhhccCCHHHHHHHHHHHcCC-CcEEEEEe
Confidence 444322123333444555565 45676653
No 56
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=81.62 E-value=2.1 Score=40.75 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=45.6
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCc----hHHHHHHhhCCCCCceEEeecccccccC---------
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACP----TLYAYLKKIRPEVSPKILEYDMRFEQYG--------- 149 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstP----Sly~~Lk~~~~~~~~~LLE~D~RF~~~g--------- 149 (209)
.+-+.-=||.+..=.+.-+..... +++|+=+-|= |||.++- .-.+++-.|.++|--.-.
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~-----GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~ 265 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA-----GKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGL 265 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc-----CCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCC
Confidence 344455566666555554444432 3566665554 4444432 112667777777543221
Q ss_pred -C---cceeecCCCCCCchHhh--cc-cccEEEECCCCCCH
Q 028404 150 -S---DFAFYDYNQPQDLPLEL--KH-AFSVVVVDPPYLSK 183 (209)
Q Consensus 150 -~---~FvfYDyn~P~~lp~~l--k~-~fD~Vv~DPPFlse 183 (209)
+ +|+.-|-= +.-..+ +| +||+||+|||=.++
T Consensus 266 ~~~~~~~i~~Dvf---~~l~~~~~~g~~fDlIilDPPsF~r 303 (393)
T COG1092 266 DGDRHRFIVGDVF---KWLRKAERRGEKFDLIILDPPSFAR 303 (393)
T ss_pred CccceeeehhhHH---HHHHHHHhcCCcccEEEECCccccc
Confidence 0 23333310 011222 22 89999999996543
No 57
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=81.23 E-value=10 Score=32.75 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCCCCCceEEeecccccccC-CcceeecCCCCCCchHhhccccc
Q 028404 96 TAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYG-SDFAFYDYNQPQDLPLELKHAFS 172 (209)
Q Consensus 96 Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~~~~~~LLE~D~RF~~~g-~~FvfYDyn~P~~lp~~lk~~fD 172 (209)
|.....+.+..... ++.+|+=|||=|=+-.+ .+. ...+++.+|+|...-... .++...+......++.. ..+||
T Consensus 105 tt~~~l~~l~~~~~-~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-~~~fD 181 (250)
T PRK00517 105 TTRLCLEALEKLVL-PGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-DLKAD 181 (250)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-CCCcC
Confidence 55556666655443 67899999997654433 232 223599999998654331 11211111111111110 11699
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 173 VVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 173 ~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+|++.. ..+.+..+...+..++++ ++.+|++
T Consensus 182 ~Vvani---~~~~~~~l~~~~~~~Lkp-gG~lils 212 (250)
T PRK00517 182 VIVANI---LANPLLELAPDLARLLKP-GGRLILS 212 (250)
T ss_pred EEEEcC---cHHHHHHHHHHHHHhcCC-CcEEEEE
Confidence 999874 345566777777777777 5567765
No 58
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=81.15 E-value=7 Score=28.41 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=53.2
Q ss_pred CCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc----------CC--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 112 DSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY----------GS--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 112 ~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~----------g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
+.+|+=|||=+=.. .+.+..+..+++-+|++...-.+ ++ .|+.-|. .........||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA----EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcccCCCCCEEEEC
Confidence 56788888874333 33333467788888988744322 12 4455444 1122234569999999
Q ss_pred CCC----C-CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 178 PPY----L-SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 178 PPF----l-seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
- | + ..+-..++-+.++.+++| +++||+.|
T Consensus 78 ~-~~~~~~~~~~~~~~~l~~~~~~L~p-gG~lvi~~ 111 (112)
T PF12847_consen 78 G-FTLHFLLPLDERRRVLERIRRLLKP-GGRLVINT 111 (112)
T ss_dssp S-GSGGGCCHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred C-CccccccchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 8 4 2 222345555666666776 56777754
No 59
>PRK01581 speE spermidine synthase; Validated
Probab=80.02 E-value=15 Score=35.02 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHH---HHHHhhCCCCCceEEeeccccc
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLY---AYLKKIRPEVSPKILEYDMRFE 146 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly---~~Lk~~~~~~~~~LLE~D~RF~ 146 (209)
+.|+.-...... +.++|+.||+=.-+ +.++. .+..++.+.|+|.+--
T Consensus 138 E~Lvhp~m~~h~-~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVI 187 (374)
T PRK01581 138 EALVHPIMSKVI-DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMI 187 (374)
T ss_pred HHHHHHHHHhCC-CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHH
Confidence 345554433333 57899999998544 23332 2346899999999743
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=79.83 E-value=27 Score=30.98 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeeccccccc--------C--CcceeecCCCCCCc
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G--SDFAFYDYNQPQDL 163 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~~--------g--~~FvfYDyn~P~~l 163 (209)
.|.....+.+.+... ++.+|+=|||=|=+-.+.-. .+..+++.+|+|..--.. + .....+.-. +
T Consensus 144 ~tt~l~l~~l~~~~~-~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~----~ 218 (288)
T TIGR00406 144 PTTSLCLEWLEDLDL-KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY----L 218 (288)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc----c
Confidence 344444444444433 67899999998755433221 233589999999642211 1 112222111 1
Q ss_pred hHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.....++||+||++.. .+.+..+...+..++++ ++.||++
T Consensus 219 ~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~Lkp-gG~li~s 258 (288)
T TIGR00406 219 EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKP-GGWLILS 258 (288)
T ss_pred ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 1223568999999864 34456666677777777 4566664
No 61
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=79.05 E-value=5.1 Score=31.45 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=56.0
Q ss_pred CCCeEEEEeCchHHH--HHH-hhCCCCCceEEeecccc--------cccC-C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLK-KIRPEVSPKILEYDMRF--------EQYG-S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk-~~~~~~~~~LLE~D~RF--------~~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=+. .|. +..++.+++.+|++... ...+ + +|+.=|..+ ++..+.++||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQELEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGCSSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccccCCCeeEEEE
Confidence 456788888763333 343 34567789999999833 3222 1 444445544 33323378999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+++....-..++-+-+..++++ ++.+++.
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~-~G~~i~~ 109 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKP-GGILIIS 109 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCC-CcEEEEE
Confidence 99986544445666666666665 3455543
No 62
>PRK04457 spermidine synthase; Provisional
Probab=78.63 E-value=6 Score=34.92 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCCeEEEEeCc--hHHHHHHhhCCCCCceEEeecccccccC----------C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACP--TLYAYLKKIRPEVSPKILEYDMRFEQYG----------S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstP--Sly~~Lk~~~~~~~~~LLE~D~RF~~~g----------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
..++|+.||+= ++-..+.+..|..++..+|+|.-..... + +++.-|..+ +-....++||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~---~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE---YIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH---HHHhCCCCCCEEEE
Confidence 46789999986 4444565657888999999986433221 1 233334321 11123467999999
Q ss_pred CCCCCCH-----HHHHHHHHHHHHhcCCCCCcEEE
Q 028404 177 DPPYLSK-----ECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 177 DPPFlse-----ec~~K~A~Tik~L~k~~~~kiil 206 (209)
|. |-+. -+...+-+.++.++++ ++.+++
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~p-gGvlvi 175 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSS-DGIFVV 175 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCC-CcEEEE
Confidence 84 3221 1112334445555665 445554
No 63
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=77.80 E-value=2.5 Score=39.02 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeecc
Q 028404 96 TAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDM 143 (209)
Q Consensus 96 Ta~~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~ 143 (209)
-.+.|.+.+.+.......+|+=+.|=| +-..|.+.. .+++..|++.
T Consensus 191 ~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~ 238 (362)
T PRK05031 191 VNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF--RRVLATEISK 238 (362)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC--CEEEEEECCH
Confidence 456677777665431224565454443 333444322 3688888776
No 64
>PRK10904 DNA adenine methylase; Provisional
Probab=77.67 E-value=4.2 Score=36.13 Aligned_cols=37 Identities=32% Similarity=0.345 Sum_probs=26.0
Q ss_pred cccEEEECCCCC----------------CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 170 AFSVVVVDPPYL----------------SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 170 ~fD~Vv~DPPFl----------------seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.-|+|.+||||. +++=.+.+|+.++.|... +.|+|||
T Consensus 174 ~~~fvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~La~~l~~l~~~-~~k~ilS 226 (271)
T PRK10904 174 KGSVVYCDPPYAPLSATANFTAYHTNSFSLEQQAHLAEIAEGLVER-HIPVLIS 226 (271)
T ss_pred CCcEEEECCCCCCCCCCCCCcCcccCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 456999999994 233345788888888543 4578876
No 65
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=76.45 E-value=36 Score=28.25 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=52.7
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccc--------ccC--C-cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~--------~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||=+=+.. +....+..+++.+|.+..-. ..+ . +|+.-|..+ ++ ..++||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~---~~--~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED---FQ--HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh---cc--ccCCccEEEeh
Confidence 3678888888654432 22335667899999997421 122 1 344455433 21 24689999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 178 PPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 178 PPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
. +..- ..+-+.+..++++ ++++++..|
T Consensus 117 ~-~~~~---~~~~~~~~~~Lkp-gG~lvi~~~ 143 (181)
T TIGR00138 117 A-LASL---NVLLELTLNLLKV-GGYFLAYKG 143 (181)
T ss_pred h-hhCH---HHHHHHHHHhcCC-CCEEEEEcC
Confidence 7 4332 3344555666676 567777654
No 66
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=76.05 E-value=17 Score=32.66 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcC-CCCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCch
Q 028404 97 AETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDLP 164 (209)
Q Consensus 97 a~~La~~l~~~a~-~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~lp 164 (209)
++.|.+.+.+... .++.+|+=++|=+=...+.-.....+++-+|++..--. .| + +|+.=|..+ +.
T Consensus 158 ~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~---~~ 234 (315)
T PRK03522 158 AAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQ---FA 234 (315)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHH---HH
Confidence 3455554444432 13578888877654433322123457888888764321 11 1 344433321 12
Q ss_pred HhhcccccEEEECCCCCC
Q 028404 165 LELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 165 ~~lk~~fD~Vv~DPPFls 182 (209)
....++||+||+|||.-+
T Consensus 235 ~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred HhcCCCCeEEEECCCCCC
Confidence 223357999999999765
No 67
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=75.70 E-value=4.1 Score=36.65 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=53.9
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccccC----------C--cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYG----------S--DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~g----------~--~FvfY 155 (209)
|=|+-.+ .|........ ..++|+=|||=+=... +..+.+..++..+|++.|=..+. + +++.-
T Consensus 27 ~~~~~Da--iLL~~~~~~~--~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~ 102 (248)
T COG4123 27 FRYGTDA--ILLAAFAPVP--KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA 102 (248)
T ss_pred cccccHH--HHHHhhcccc--cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh
Confidence 4455443 3333333332 4789998888854443 33444558999999999866542 1 56677
Q ss_pred cCCCCCCchHhh-cccccEEEECCCCCC
Q 028404 156 DYNQPQDLPLEL-KHAFSVVVVDPPYLS 182 (209)
Q Consensus 156 Dyn~P~~lp~~l-k~~fD~Vv~DPPFls 182 (209)
|.++ +...+ ..+||+||+-|||--
T Consensus 103 Di~~---~~~~~~~~~fD~Ii~NPPyf~ 127 (248)
T COG4123 103 DIKE---FLKALVFASFDLIICNPPYFK 127 (248)
T ss_pred hHHH---hhhcccccccCEEEeCCCCCC
Confidence 7653 22233 336999999999963
No 68
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=73.73 E-value=4.5 Score=38.02 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=19.4
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
.+||+|++|| |++.. .-+-.+++.+.+.
T Consensus 113 ~~fDvIdlDP-fGs~~--~fld~al~~~~~~ 140 (374)
T TIGR00308 113 RKFHVIDIDP-FGTPA--PFVDSAIQASAER 140 (374)
T ss_pred CCCCEEEeCC-CCCcH--HHHHHHHHhcccC
Confidence 5799999999 78753 3444556666553
No 69
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=73.08 E-value=51 Score=27.25 Aligned_cols=90 Identities=7% Similarity=0.117 Sum_probs=51.3
Q ss_pred CCCeEEEEeCchHHHHHH--h-hCCCCCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLYAYLK--K-IRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk--~-~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
.+.+|+=+||-+=+..+. + ..+..+++.+|.+.+... +| . .++.-|.. ++...+.+.||+|+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~---~~l~~~~~~~D~V~ 116 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP---EILFTINEKFDRIF 116 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh---hhHhhcCCCCCEEE
Confidence 577999999986554432 2 234568999999875543 33 1 23333332 22233456899999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+.... .+. ..+-..+..++++ +++|++.
T Consensus 117 ~~~~~--~~~-~~~l~~~~~~Lkp-gG~lv~~ 144 (198)
T PRK00377 117 IGGGS--EKL-KEIISASWEIIKK-GGRIVID 144 (198)
T ss_pred ECCCc--ccH-HHHHHHHHHHcCC-CcEEEEE
Confidence 97632 232 3333444445566 4577653
No 70
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=73.00 E-value=13 Score=31.85 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=66.6
Q ss_pred ccccccccChHHHHHHHHHHHhhcC-CCCCeEEEEeCc--hHHHHHHhhCCCCCceEEeeccccccc----CCcceeecC
Q 028404 85 WRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACP--TLYAYLKKIRPEVSPKILEYDMRFEQY----GSDFAFYDY 157 (209)
Q Consensus 85 wqlSQFWYSd~Ta~~La~~l~~~a~-~~~~rIaclstP--Sly~~Lk~~~~~~~~~LLE~D~RF~~~----g~~FvfYDy 157 (209)
|+-.+|-.........+..+++... .++.+|+=|||= .+...|.+..|+.+++.+|+....-.. +-+|+.-|.
T Consensus 2 w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~ 81 (255)
T PRK14103 2 WDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV 81 (255)
T ss_pred CCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh
Confidence 3444443333333333334444332 256789989885 334455555677789999998876543 125666666
Q ss_pred CCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
... + ..++||+|++-..+-.-.-..++..-+..+++| ++++++.
T Consensus 82 ~~~---~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp-gG~l~~~ 125 (255)
T PRK14103 82 RDW---K--PKPDTDVVVSNAALQWVPEHADLLVRWVDELAP-GSWIAVQ 125 (255)
T ss_pred hhC---C--CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCC-CcEEEEE
Confidence 432 1 136899999987653311124455555566677 4566654
No 71
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=72.75 E-value=19 Score=30.61 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=67.2
Q ss_pred cccccccccChHHHHHHHHHHHhhcC-CCCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccccc-----CC-ccee
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY-----GS-DFAF 154 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~-~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~-----g~-~Fvf 154 (209)
+|+-++|=-........++.++.... .++.+|+=|||=+ +-..|.+..+..+++.+|++...-.. .. +|+.
T Consensus 3 ~w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~ 82 (258)
T PRK01683 3 DWNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE 82 (258)
T ss_pred CCCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE
Confidence 37777663222333345666665543 2567899898863 33345544667789999998654332 11 3444
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCCH-HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSK-ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlse-ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
=|.... .+ ..+||+|++...|--- + ..++-..+..++++ ++++++++
T Consensus 83 ~d~~~~--~~---~~~fD~v~~~~~l~~~~d-~~~~l~~~~~~Lkp-gG~~~~~~ 130 (258)
T PRK01683 83 ADIASW--QP---PQALDLIFANASLQWLPD-HLELFPRLVSLLAP-GGVLAVQM 130 (258)
T ss_pred Cchhcc--CC---CCCccEEEEccChhhCCC-HHHHHHHHHHhcCC-CcEEEEEC
Confidence 444322 11 2479999999886321 2 24455555566676 45676653
No 72
>PTZ00146 fibrillarin; Provisional
Probab=72.55 E-value=30 Score=31.88 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcC----CCCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccc----cc----CC-cceeecCC
Q 028404 95 VTAETVAQEAVSLCS----DSDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFE----QY----GS-DFAFYDYN 158 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~----~~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~----~~----g~-~FvfYDyn 158 (209)
..-..||..|+.... .++.+|+-|+|=+=+. .+-++ .+.-.|+-+|+..|-. .. .. .++.-|.+
T Consensus 112 p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred CcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 334456666654433 2578999999886443 33333 2345799999887521 11 11 46667777
Q ss_pred CCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 159 QPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 159 ~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
.|..++. +..++|+|++|=... +-...+...++.++|+ ++.+++
T Consensus 192 ~p~~y~~-~~~~vDvV~~Dva~p--dq~~il~~na~r~LKp-GG~~vI 235 (293)
T PTZ00146 192 YPQKYRM-LVPMVDVIFADVAQP--DQARIVALNAQYFLKN-GGHFII 235 (293)
T ss_pred Chhhhhc-ccCCCCEEEEeCCCc--chHHHHHHHHHHhccC-CCEEEE
Confidence 6643322 224799999998642 2224555567878887 456665
No 73
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=72.28 E-value=7.1 Score=34.49 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=26.3
Q ss_pred cccEEEECCCCC----------------CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 170 AFSVVVVDPPYL----------------SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 170 ~fD~Vv~DPPFl----------------seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.-|+|.+||||. +++=...+++.++-|... +.|+|++.
T Consensus 172 ~~dfvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~L~~~l~~l~~~-~~~~~lS~ 225 (266)
T TIGR00571 172 DDSFVYCDPPYLPLSATYNFTGYHTNGFDEDEQKRLANFCKSLDER-GIKFLLSN 225 (266)
T ss_pred CCCEEEECCCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 456999999994 333345788888888543 45787763
No 74
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=72.22 E-value=13 Score=31.58 Aligned_cols=90 Identities=11% Similarity=0.106 Sum_probs=53.1
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccccc-----C-CcceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY-----G-SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~-----g-~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
...+|+-|||=+=. ..|.+ .+.+++.+|++...... . ..|+.-|.... .++ .++||+|+...++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~~~---~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKDAADHYLAGDIESL-PLA---TATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-cCC---CCcEEEEEECchhhh
Confidence 46789999987533 34443 34688999998755432 1 14666676442 122 357999999877643
Q ss_pred -HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 183 -KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 183 -eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+. .++-.-+..++++ ++.+++.|
T Consensus 116 ~~d~-~~~l~~~~~~Lk~-gG~l~~~~ 140 (251)
T PRK10258 116 CGNL-STALRELYRVVRP-GGVVAFTT 140 (251)
T ss_pred cCCH-HHHHHHHHHHcCC-CeEEEEEe
Confidence 222 3333444455565 45677664
No 75
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=72.15 E-value=46 Score=28.22 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=53.0
Q ss_pred CCCeEEEEeCchHH--HHHHhh-CCCCCceEEeecccccccCC-cceeecCCCCCCchH---hh-cccccEEEECC-CCC
Q 028404 111 SDSRVACIACPTLY--AYLKKI-RPEVSPKILEYDMRFEQYGS-DFAFYDYNQPQDLPL---EL-KHAFSVVVVDP-PYL 181 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~-~~~~~~~LLE~D~RF~~~g~-~FvfYDyn~P~~lp~---~l-k~~fD~Vv~DP-PFl 181 (209)
++.+|+=|||=+=. ..+.+. .+...++-+|++.. ...++ .|+.=|...+..++. .+ .++||+|++|+ |+.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~ 129 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM 129 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc
Confidence 56788888776433 344443 34458999999872 22322 566667776643332 23 35799999986 433
Q ss_pred -CHHH---------HHHHHHHHHHhcCCCCCcEEE
Q 028404 182 -SKEC---------LEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 182 -seec---------~~K~A~Tik~L~k~~~~kiil 206 (209)
+... .+.+-..+..++++ ++.+++
T Consensus 130 ~g~~~~d~~~~~~~~~~~L~~~~~~Lkp-GG~~vi 163 (209)
T PRK11188 130 SGTPAVDIPRAMYLVELALDMCRDVLAP-GGSFVV 163 (209)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEE
Confidence 2211 12333445555666 445655
No 76
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=72.10 E-value=48 Score=30.39 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=57.7
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhh--C------C-CCCceEEe------------------ec
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKI--R------P-EVSPKILE------------------YD 142 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~--~------~-~~~~~LLE------------------~D 142 (209)
|+.+....|++.|.+... ..++.+.++=|--. +|+-. . + +.+++.+| +-
T Consensus 74 ~~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~ 151 (397)
T TIGR03246 74 YTNEPVLRLAKKLVDATF--ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYS 151 (397)
T ss_pred cCCHHHHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 344556778888877652 34676665543222 23310 0 1 22344443 11
Q ss_pred ccccccCCcceeecCCCCCCchHhhcccccEEEECCCCCCHHHH---HHHHHHHHHhcCC
Q 028404 143 MRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECL---EKVSETVSFLARP 199 (209)
Q Consensus 143 ~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~---~K~A~Tik~L~k~ 199 (209)
..|..++..+.++.||.+..+.+.+....-.||++|++..-.+. ..+-+.++.|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~ 211 (397)
T TIGR03246 152 QGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDR 211 (397)
T ss_pred cCCCCCCCceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence 12333333567888887777776676667799999999743322 2333445555554
No 77
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=71.04 E-value=39 Score=28.08 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=54.3
Q ss_pred CCCeEEEEeCchHH--HHHHhh-CCCCCceEEeeccccc--------ccC--C-cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLY--AYLKKI-RPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~-~~~~~~~LLE~D~RF~--------~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||-+=. ..|.+. .+..+++-+|++.... ..+ . +|+..|...- .++ .++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~---~~~fD~V~~ 120 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFD---DNSFDYVTI 120 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCC---CCCccEEEE
Confidence 56899999997544 345443 3556899999974332 111 1 4455554321 122 368999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.-.+...+...++-..+..++++ +++|++.
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~-gG~l~~~ 150 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKP-GGKVVCL 150 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCc-CeEEEEE
Confidence 87765543345555555556676 4566653
No 78
>PRK00536 speE spermidine synthase; Provisional
Probab=70.98 E-value=36 Score=30.65 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCc---hHHHHHHhhCCCCCceEEeeccccccc-----CCcceeecCCCCC-----Cch
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACP---TLYAYLKKIRPEVSPKILEYDMRFEQY-----GSDFAFYDYNQPQ-----DLP 164 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstP---Sly~~Lk~~~~~~~~~LLE~D~RF~~~-----g~~FvfYDyn~P~-----~lp 164 (209)
+.|+.-.+-... +.+||+.||.= ++-+-||+ +. ++.+.|+|..--.. +. +.- -|+.|. .+.
T Consensus 60 EmLvHppl~~h~-~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~-~~~-~~~DpRv~l~~~~~ 133 (262)
T PRK00536 60 ELLAHMGGCTKK-ELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPH-FHE-VKNNKNFTHAKQLL 133 (262)
T ss_pred HHHHHHHHhhCC-CCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHH-HHH-hhcCCCEEEeehhh
Confidence 355555554444 67999999986 88888886 33 99999999854321 21 100 112221 011
Q ss_pred HhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 165 LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 165 ~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
+.-.++||+||+|-.|- + +-+ +.++..+++
T Consensus 134 ~~~~~~fDVIIvDs~~~-~---~fy-~~~~~~L~~ 163 (262)
T PRK00536 134 DLDIKKYDLIICLQEPD-I---HKI-DGLKRMLKE 163 (262)
T ss_pred hccCCcCCEEEEcCCCC-h---HHH-HHHHHhcCC
Confidence 11236799999994443 2 223 445666666
No 79
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=70.89 E-value=17 Score=31.63 Aligned_cols=87 Identities=24% Similarity=0.225 Sum_probs=56.5
Q ss_pred ccccc-cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-------C--cc
Q 028404 85 WRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-------S--DF 152 (209)
Q Consensus 85 wqlSQ-FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-------~--~F 152 (209)
..+.| |--+.+.++.+++.+.-. ++.+|+=|||-+=.. .|.+. ..+++.+|+|.+..... + ++
T Consensus 5 k~~GQnfl~d~~~~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~i 79 (258)
T PRK14896 5 KKLGQHFLIDDRVVDRIVEYAEDT---DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEI 79 (258)
T ss_pred CcCCccccCCHHHHHHHHHhcCCC---CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEE
Confidence 45667 668899999998876322 567899898884333 34433 34799999997665331 1 34
Q ss_pred eeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+.-|..+- .+| .||.||.-|||.-
T Consensus 80 i~~D~~~~-~~~-----~~d~Vv~NlPy~i 103 (258)
T PRK14896 80 IEGDALKV-DLP-----EFNKVVSNLPYQI 103 (258)
T ss_pred EEeccccC-Cch-----hceEEEEcCCccc
Confidence 44454321 122 3799999999974
No 80
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=69.76 E-value=17 Score=32.90 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=55.9
Q ss_pred Cccccccccccc-ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccccC--------
Q 028404 81 VSEDWRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYG-------- 149 (209)
Q Consensus 81 ~~EDwqlSQFWY-Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~g-------- 149 (209)
+.-...+.|-|. +...+..+++.+.-. ++.+|+=|||-+=. ..|.+. ..+++.+|+|.|+..+.
T Consensus 8 ~~~kk~~GQnFL~d~~i~~~Iv~~~~~~---~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~ 82 (294)
T PTZ00338 8 MVFNKKFGQHILKNPLVLDKIVEKAAIK---PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP 82 (294)
T ss_pred cCcCCCCCccccCCHHHHHHHHHhcCCC---CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC
Confidence 344667889775 667777777765322 56788888888433 344432 35799999999876531
Q ss_pred --Cc--ceeecCCCCCCchHhhcccccEEEECCCCC
Q 028404 150 --SD--FAFYDYNQPQDLPLELKHAFSVVVVDPPYL 181 (209)
Q Consensus 150 --~~--FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (209)
++ ++.=|.-+ + .+ ..||+||+.|||-
T Consensus 83 ~~~~v~ii~~Dal~---~--~~-~~~d~VvaNlPY~ 112 (294)
T PTZ00338 83 LASKLEVIEGDALK---T--EF-PYFDVCVANVPYQ 112 (294)
T ss_pred CCCcEEEEECCHhh---h--cc-cccCEEEecCCcc
Confidence 11 12222211 1 11 3589999999996
No 81
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=69.31 E-value=25 Score=32.68 Aligned_cols=82 Identities=17% Similarity=0.359 Sum_probs=52.2
Q ss_pred CCeEEEEeCch--HHHHHHhhCCCCCceEEeecccccccC---------Cc-ceeecC-CCCCCchHhhcccccEEEECC
Q 028404 112 DSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYG---------SD-FAFYDY-NQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 112 ~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~g---------~~-FvfYDy-n~P~~lp~~lk~~fD~Vv~DP 178 (209)
..+|+=+||=- |=..+.+..|..++.|.|.|.|=-... +. +++.+- -.| .+++||.||+-|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------v~~kfd~IisNP 232 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------VEGKFDLIISNP 232 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------ccccccEEEeCC
Confidence 45899898873 333455567888999999998632221 23 566553 223 345899999999
Q ss_pred CCCC-HHHH-----HHHHHHHHHhcCC
Q 028404 179 PYLS-KECL-----EKVSETVSFLARP 199 (209)
Q Consensus 179 PFls-eec~-----~K~A~Tik~L~k~ 199 (209)
||-. .+.. +-+..+.+.|..+
T Consensus 233 Pfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 233 PFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred CccCCcchhHHHHHHHHHHHHHhhccC
Confidence 9974 2222 3455556666554
No 82
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=69.24 E-value=7.3 Score=36.60 Aligned_cols=86 Identities=16% Similarity=0.039 Sum_probs=42.0
Q ss_pred CeEEEEeCchHHHHHH--hhCCCCCceEEeecccccccC---------C--cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 113 SRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQYG---------S--DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 113 ~rIaclstPSly~~Lk--~~~~~~~~~LLE~D~RF~~~g---------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
.+|+=+.|=|=...|. ...+...++..|.+..-..+. . +++.-|.+.- ++. ...||+|++|||
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--l~~--~~~fD~V~lDP~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--LHE--ERKFDVVDIDPF 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--Hhh--cCCCCEEEECCC
Confidence 3565555554444332 112234688888886443221 0 1333333221 111 356999999997
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 180 YLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 180 Flseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++.. .-+..+++.+..+ +||..|
T Consensus 135 -Gs~~--~~l~~al~~~~~~---gilyvS 157 (382)
T PRK04338 135 -GSPA--PFLDSAIRSVKRG---GLLCVT 157 (382)
T ss_pred -CCcH--HHHHHHHHHhcCC---CEEEEE
Confidence 7642 2223335555433 455443
No 83
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=68.79 E-value=13 Score=29.91 Aligned_cols=66 Identities=23% Similarity=0.090 Sum_probs=39.2
Q ss_pred CCCeEEEEeCch--HHHHHHhhCCCCCceEEeecccccccC-------C--cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYG-------S--DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~g-------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++.+|+=|||-+ +-..+.+. ..+++.+|+|.++.... + +++.=|..+- .++. +.||+|+.+||
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-~~~~---~~~d~vi~n~P 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-DLPK---LQPYKVVGNLP 86 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-Cccc---cCCCEEEECCC
Confidence 456888888773 43444442 45899999998765431 1 2232232210 0111 25899999999
Q ss_pred CCC
Q 028404 180 YLS 182 (209)
Q Consensus 180 Fls 182 (209)
|-.
T Consensus 87 y~~ 89 (169)
T smart00650 87 YNI 89 (169)
T ss_pred ccc
Confidence 974
No 84
>PLN02476 O-methyltransferase
Probab=67.78 E-value=29 Score=31.53 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=65.3
Q ss_pred cccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh---CCCCCceEEeecccccccCC-cceeecCC-----
Q 028404 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI---RPEVSPKILEYDMRFEQYGS-DFAFYDYN----- 158 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~---~~~~~~~LLE~D~RF~~~g~-~FvfYDyn----- 158 (209)
+|-+.+.++...|.-.+... +.++|+=|||=+=|..|.-. .++.+++-+|.|........ .|-.+.+.
T Consensus 98 ~~~~v~~~~g~lL~~L~~~~---~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~l 174 (278)
T PLN02476 98 SQMQVSPDQAQLLAMLVQIL---GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNV 174 (278)
T ss_pred CccccCHHHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 67788999998888777665 57899999999777765321 23457899999986654421 22222222
Q ss_pred ---CCCC-chHhh-----cccccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 159 ---QPQD-LPLEL-----KHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 159 ---~P~~-lp~~l-----k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
...+ |+. + .++||+|++|++= ..- ..+-+.+.-|+++
T Consensus 175 i~GdA~e~L~~-l~~~~~~~~FD~VFIDa~K--~~Y-~~y~e~~l~lL~~ 220 (278)
T PLN02476 175 KHGLAAESLKS-MIQNGEGSSYDFAFVDADK--RMY-QDYFELLLQLVRV 220 (278)
T ss_pred EEcCHHHHHHH-HHhcccCCCCCEEEECCCH--HHH-HHHHHHHHHhcCC
Confidence 1111 332 3 2579999999983 333 3333444445565
No 85
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=66.79 E-value=4.5 Score=36.23 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=16.7
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 171 FSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 171 fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
--+|+|||||-..+=-+.++.+++...+.
T Consensus 126 RglVLIDPpYE~~~dy~~v~~~l~~a~kR 154 (245)
T PF04378_consen 126 RGLVLIDPPYEQKDDYQRVVDALAKALKR 154 (245)
T ss_dssp -EEEEE-----STTHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHHh
Confidence 34999999999876567777777666554
No 86
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=66.22 E-value=63 Score=26.25 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=59.3
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC-CcceeecCCCC
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG-SDFAFYDYNQP 160 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g-~~FvfYDyn~P 160 (209)
++.+.++.++-..+... ++.+|+=|||=+=+. .+.+..+..+++.+|.+..... ++ .+..+..-+.+
T Consensus 14 ~~~~~~r~~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 14 MTKEEVRALALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred CchHHHHHHHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 45555555554444432 567898898865444 3334456778999999885432 21 12233322222
Q ss_pred CCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 161 QDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..+.++||+|+++-....- ..+-..+..++++ ++++++.
T Consensus 92 ----~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~Lk~-gG~lv~~ 130 (187)
T PRK08287 92 ----IELPGKADAIFIGGSGGNL---TAIIDWSLAHLHP-GGRLVLT 130 (187)
T ss_pred ----hhcCcCCCEEEECCCccCH---HHHHHHHHHhcCC-CeEEEEE
Confidence 2234679999998654332 3333444445566 4567664
No 87
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=66.08 E-value=40 Score=29.14 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=36.6
Q ss_pred cccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--Hhh-CCCCCceEEeeccccccc
Q 028404 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRFEQY 148 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~-~~~~~~~LLE~D~RF~~~ 148 (209)
.+-+=+.++.+.|.-.+ +.. +.++|+=|||=+=|-.+ -.. .+..+++-+|+|..+...
T Consensus 48 ~~~~v~~~~g~~L~~l~-~~~--~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~ 108 (234)
T PLN02781 48 SEMEVPVDEGLFLSMLV-KIM--NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV 108 (234)
T ss_pred cccccCHHHHHHHHHHH-HHh--CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 33344556666665544 443 57899999988666433 222 235689999999866543
No 88
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=65.49 E-value=36 Score=28.31 Aligned_cols=88 Identities=10% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC-C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
+..+|+-+||=+=.. .|.+ .+.+++-+|+..-.- .-+ . ++..-|.... .+.++||+|++=
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~--~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~I~~~ 102 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAA--NGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-----TFDGEYDFILST 102 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-----CcCCCcCEEEEe
Confidence 468999999964333 2333 245788999865211 111 1 3444454332 124679988754
Q ss_pred CC--CCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 178 PP--YLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 178 PP--Flseec~~K~A~Tik~L~k~~~~kiil 206 (209)
-. |++.+....+...+..++++ ++++|+
T Consensus 103 ~~~~~~~~~~~~~~l~~i~~~Lkp-gG~~~~ 132 (197)
T PRK11207 103 VVLMFLEAKTIPGLIANMQRCTKP-GGYNLI 132 (197)
T ss_pred cchhhCCHHHHHHHHHHHHHHcCC-CcEEEE
Confidence 33 55666677888888888888 556544
No 89
>PRK04266 fibrillarin; Provisional
Probab=64.84 E-value=94 Score=26.96 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=51.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccc----ccc----cCC-cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMR----FEQ----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~R----F~~----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++.+|+.+||=+=+. .|.+..+...++-+|.+.. +.. ... .++.=|...|.. ...+..+||+|+.|=+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~-~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER-YAHVVEKVDVIYQDVA 150 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch-hhhccccCCEEEECCC
Confidence 578999999985333 3444444457999999872 211 111 333336555421 1123456999999855
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 180 YLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 180 Flseec~~K~A~Tik~L~k~~~~kiil 206 (209)
.-.. ...+-+.+..++|+ +++|++
T Consensus 151 ~p~~--~~~~L~~~~r~LKp-GG~lvI 174 (226)
T PRK04266 151 QPNQ--AEIAIDNAEFFLKD-GGYLLL 174 (226)
T ss_pred ChhH--HHHHHHHHHHhcCC-CcEEEE
Confidence 3111 12223445556677 567776
No 90
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=64.70 E-value=31 Score=33.50 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=50.4
Q ss_pred cccccChHHHHHHHHHHHh-hcCCCCCeEEEEeCc----hHHHHHHhhCCCCCceEEeecc-cccc-------cC-Cc--
Q 028404 88 SQFWYDAVTAETVAQEAVS-LCSDSDSRVACIACP----TLYAYLKKIRPEVSPKILEYDM-RFEQ-------YG-SD-- 151 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~-~a~~~~~rIaclstP----Sly~~Lk~~~~~~~~~LLE~D~-RF~~-------~g-~~-- 151 (209)
+-++|-.+-+..++-.++. ... ++.+|+=+|+- |.+.+-.- ..+..++-.|++. |... +| .+
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~~~~-pg~~VLD~CAAPGgKTt~la~~l-~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~ 167 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFADDN-APQRVLDMAAAPGSKTTQIAALM-NNQGAIVANEYSASRVKVLHANISRCGVSNVA 167 (470)
T ss_pred CCcEEEECHHHHHHHHHhccCCC-CCCEEEEeCCCccHHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 4456666666666655552 122 67788888774 55543211 1223566677764 3322 22 12
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
.+..| +..++..+.+.||+|++|+|=-+
T Consensus 168 v~~~D---~~~~~~~~~~~fD~ILvDaPCSG 195 (470)
T PRK11933 168 LTHFD---GRVFGAALPETFDAILLDAPCSG 195 (470)
T ss_pred EEeCc---hhhhhhhchhhcCeEEEcCCCCC
Confidence 22333 33455556678999999999553
No 91
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=64.65 E-value=10 Score=36.19 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=38.0
Q ss_pred ceEEeecccccccC----------C--cceeecCCCCCCchHhhcccccEEEECCCCCCH----HHHH----HHHHHHHH
Q 028404 136 PKILEYDMRFEQYG----------S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK----ECLE----KVSETVSF 195 (209)
Q Consensus 136 ~~LLE~D~RF~~~g----------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse----ec~~----K~A~Tik~ 195 (209)
++-.|+|.|--.-. + +|..-|.+ .|++.+ ..+|+||+.|||+-+ +-++ .+..++|.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~---~l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADAT---DLKEPL-EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchh---hCCCCC-CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 44667777654321 1 45555543 233334 679999999999842 2222 24456655
Q ss_pred hcCCCCCcEEEec
Q 028404 196 LARPGDSKLLLLT 208 (209)
Q Consensus 196 L~k~~~~kiilcT 208 (209)
+.+. -++.|++|
T Consensus 333 ~~~~-ws~~v~tt 344 (381)
T COG0116 333 LLAG-WSRYVFTT 344 (381)
T ss_pred HhcC-CceEEEEc
Confidence 5553 34566665
No 92
>PLN02823 spermine synthase
Probab=64.23 E-value=45 Score=30.94 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchH---HHHHHhhCCCCCceEEeeccccccc
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTL---YAYLKKIRPEVSPKILEYDMRFEQY 148 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSl---y~~Lk~~~~~~~~~LLE~D~RF~~~ 148 (209)
+.|+....-... +.++|+.||.=.- .+.++. .+..++.+.|+|..--..
T Consensus 91 E~l~h~~l~~~~-~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~l 142 (336)
T PLN02823 91 ESLVHPALLHHP-NPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDF 142 (336)
T ss_pred HHHHhHHHhhCC-CCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHH
Confidence 345544333332 5679999998733 333443 234589999999855443
No 93
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=63.05 E-value=17 Score=39.28 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh----CCCCCceEEeecccccccCCcceeecCCCCCCchHhhcc
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI----RPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKH 169 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~----~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp~~lk~ 169 (209)
|.|..+|-+-|.--++ ++.+||.-|||.=|++|.+. .++.-.++ |-++-..=.-..--.+.+...+
T Consensus 1024 dHSSaRiERfLqlcAe-~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvV---------fTPKSmLR~KaA~S~vedFT~g 1093 (1228)
T PRK12270 1024 DHSSARIERFLQLCAE-GNMTVAQPSTPANYFHLLRRQALSGPRRPLVV---------FTPKSMLRLKAAVSDVEDFTEG 1093 (1228)
T ss_pred CcchHHHHHHHHhhcc-CCeEEEccCChHHHHHHHHHHhhcCCCCCeEE---------EChHHhhcchhhcCCHHHhccC
Confidence 4455566555544444 78899999999999988764 11111111 1000000000000012233468
Q ss_pred cccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 170 ~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+|.-||-||=....+ . -.|||||||
T Consensus 1094 ~F~pVi~D~~~~~~~------------~---V~RVlLcSG 1118 (1228)
T PRK12270 1094 KFRPVIDDPTVDDGA------------K---VRRVLLCSG 1118 (1228)
T ss_pred CceecCCCCCCCCcc------------c---eeEEEEEcc
Confidence 899999999876653 1 238999998
No 94
>PLN02366 spermidine synthase
Probab=62.45 E-value=78 Score=28.94 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=23.0
Q ss_pred CCCeEEEEeCc--hHHHHHHhhCCC-CCceEEeeccc
Q 028404 111 SDSRVACIACP--TLYAYLKKIRPE-VSPKILEYDMR 144 (209)
Q Consensus 111 ~~~rIaclstP--Sly~~Lk~~~~~-~~~~LLE~D~R 144 (209)
+.++|+.||+= .+-..+.+ .+. .++.+.|+|..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk-~~~v~~V~~VEiD~~ 126 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIAR-HSSVEQIDICEIDKM 126 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCCCeEEEEECCHH
Confidence 57899999996 33333333 354 58999999984
No 95
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=61.33 E-value=33 Score=31.65 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=17.7
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHh
Q 028404 171 FSVVVVDPPYLSKECLEKVSETVSFL 196 (209)
Q Consensus 171 fD~Vv~DPPFlseec~~K~A~Tik~L 196 (209)
--+|+|||||--.+=-..+..|++.-
T Consensus 157 RglVLIDPPfE~~~eY~rvv~~l~~~ 182 (279)
T COG2961 157 RGLVLIDPPFELKDEYQRVVEALAEA 182 (279)
T ss_pred ceEEEeCCCcccccHHHHHHHHHHHH
Confidence 44999999998765445555555443
No 96
>PRK10742 putative methyltransferase; Provisional
Probab=60.33 E-value=5.5 Score=35.92 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.7
Q ss_pred ccccEEEECCCCCCHH
Q 028404 169 HAFSVVVVDPPYLSKE 184 (209)
Q Consensus 169 ~~fD~Vv~DPPFlsee 184 (209)
.+||+|..||||-.+.
T Consensus 163 ~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 163 PRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCCcEEEECCCCCCCc
Confidence 4699999999998763
No 97
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=58.64 E-value=12 Score=34.88 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C-C--cceeecCC
Q 028404 93 DAVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G-S--DFAFYDYN 158 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn 158 (209)
.....+.|.+.+.+.+. .++.+|+=++|=+=.. .|.+. ..+++-+|++...-.. | . +|+.-|..
T Consensus 273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~ 350 (431)
T TIGR00479 273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE 350 (431)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence 45566677777776553 1346777666653333 33332 2478889988744322 1 1 35555543
Q ss_pred CCCCchHh-h-cccccEEEECCCCCC
Q 028404 159 QPQDLPLE-L-KHAFSVVVVDPPYLS 182 (209)
Q Consensus 159 ~P~~lp~~-l-k~~fD~Vv~DPPFls 182 (209)
+ .++.. + .++||+||+|||..+
T Consensus 351 ~--~l~~~~~~~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 351 T--VLPKQPWAGQIPDVLLLDPPRKG 374 (431)
T ss_pred H--HHHHHHhcCCCCCEEEECcCCCC
Confidence 2 13322 2 246999999999876
No 98
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=57.90 E-value=14 Score=37.23 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=12.8
Q ss_pred ccccEEEECCCCCCH
Q 028404 169 HAFSVVVVDPPYLSK 183 (209)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (209)
+++|+||++|||+.+
T Consensus 302 ~~~d~IvtNPPYg~r 316 (702)
T PRK11783 302 GPTGLVISNPPYGER 316 (702)
T ss_pred CCCCEEEECCCCcCc
Confidence 569999999999754
No 99
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=57.88 E-value=51 Score=26.81 Aligned_cols=107 Identities=16% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCchH--HHHHHhhCCCCCceEEeeccccccc-----CC--cceeecCCCCCCchHh
Q 028404 96 TAETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRFEQY-----GS--DFAFYDYNQPQDLPLE 166 (209)
Q Consensus 96 Ta~~La~~l~~~a~~~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~RF~~~-----g~--~FvfYDyn~P~~lp~~ 166 (209)
.+..|++.+.........+|+=|||-+= -..+.+..+..+++..|.+..+... +. .|+.-|...- .+
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~--- 94 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL-PL--- 94 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC-CC---
Confidence 3344444444321013468999988743 3345554566778999988765422 11 3555555421 11
Q ss_pred hcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 167 LKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 167 lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..++||+|++.=.+-...-..++-..++.++++ ++.+++.
T Consensus 95 ~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~-~G~l~~~ 134 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCDDLSQALSELARVLKP-GGLLAFS 134 (240)
T ss_pred CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCC-CcEEEEE
Confidence 135799999865443322235566667777777 4566664
No 100
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=57.73 E-value=47 Score=30.78 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=50.9
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEe-Cc---hHHHHHHhhCCCCCceEEeecc-ccccc-------CC---ccee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIA-CP---TLYAYLKKIRPEVSPKILEYDM-RFEQY-------GS---DFAF 154 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIacls-tP---Sly~~Lk~~~~~~~~~LLE~D~-RF~~~-------g~---~Fvf 154 (209)
+||-.+-+..|+-.++.-- ++.+|+=+| +| |.|.+-.-...+..++-+|.|. |.... |- .-+.
T Consensus 137 ~~~vQd~sS~l~a~~L~p~--pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~ 214 (355)
T COG0144 137 LIYVQDEASQLPALVLDPK--PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVN 214 (355)
T ss_pred EEEEcCHHHHHHHHHcCCC--CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEe
Confidence 4555555555666665553 566776554 45 6555433212234568899887 44332 21 2445
Q ss_pred ecCCCCCCchHhhc--ccccEEEECCCCCCHHHH
Q 028404 155 YDYNQPQDLPLELK--HAFSVVVVDPPYLSKECL 186 (209)
Q Consensus 155 YDyn~P~~lp~~lk--~~fD~Vv~DPPFlseec~ 186 (209)
.|-.. ++.... ++||.|++|||=-+.-.+
T Consensus 215 ~d~~~---~~~~~~~~~~fD~iLlDaPCSg~G~i 245 (355)
T COG0144 215 KDARR---LAELLPGGEKFDRILLDAPCSGTGVI 245 (355)
T ss_pred ccccc---ccccccccCcCcEEEECCCCCCCccc
Confidence 55432 222222 269999999997665544
No 101
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=56.82 E-value=1.1e+02 Score=25.03 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=55.4
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCC-CCCceEEeeccccccc-----------CC-cceee
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRP-EVSPKILEYDMRFEQY-----------GS-DFAFY 155 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~-~~~~~LLE~D~RF~~~-----------g~-~FvfY 155 (209)
++.......+.+.+... ++.+|+=|||.+=.. .+....+ ..+++.+|++...... +. .|+.-
T Consensus 34 ~~~~~~~~~~~~~~~~~---~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 110 (239)
T PRK00216 34 GLHRVWRRKTIKWLGVR---PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG 110 (239)
T ss_pred CCcHHHHHHHHHHhCCC---CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec
Confidence 34444444555544322 467999999985433 3333344 5789999998644221 11 34444
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|.... + .-.++||+|++.-=+.. .+ ...+-..+..++++ +++||++
T Consensus 111 d~~~~---~-~~~~~~D~I~~~~~l~~~~~-~~~~l~~~~~~L~~-gG~li~~ 157 (239)
T PRK00216 111 DAEAL---P-FPDNSFDAVTIAFGLRNVPD-IDKALREMYRVLKP-GGRLVIL 157 (239)
T ss_pred ccccC---C-CCCCCccEEEEecccccCCC-HHHHHHHHHHhccC-CcEEEEE
Confidence 44321 1 11367999886311111 01 12333444555666 4567764
No 102
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=55.03 E-value=39 Score=31.85 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=62.2
Q ss_pred cCcccccccccc-cChHHHHHHHHHHHhhcCCCCCeEEEEe---CchHHHHHHhh-CCCCCceEEeecccccccCCccee
Q 028404 80 LVSEDWRLSQFW-YDAVTAETVAQEAVSLCSDSDSRVACIA---CPTLYAYLKKI-RPEVSPKILEYDMRFEQYGSDFAF 154 (209)
Q Consensus 80 ~~~EDwqlSQFW-YSd~Ta~~La~~l~~~a~~~~~rIacls---tPSly~~Lk~~-~~~~~~~LLE~D~RF~~~g~~Fvf 154 (209)
.|=.||.-||+= =-+=|.+.||+.+......+.+.|=+|+ ||.+..-|... ....+ .+ +.
T Consensus 133 VfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~lp~Ile~l~~~~~~------------iP---vv 197 (335)
T COG1313 133 VFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPHLPFILEALRYASEN------------IP---VV 197 (335)
T ss_pred EEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCchHHHHHHHHHHhcC------------CC---EE
Confidence 466899999984 1122455566555554432678999998 77666655432 00001 11 55
Q ss_pred ecCCCC--CCchHhhcccccEEEECCCCCCHHHHHHHHHH
Q 028404 155 YDYNQP--QDLPLELKHAFSVVVVDPPYLSKECLEKVSET 192 (209)
Q Consensus 155 YDyn~P--~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~T 192 (209)
||-|-= ++.-.-|.|-.|+=+.|==|++.+|-+|++.+
T Consensus 198 wNSnmY~s~E~l~lL~gvVDiyL~DfKYgNdeca~kySkv 237 (335)
T COG1313 198 WNSNMYMSEETLKLLDGVVDIYLPDFKYGNDECAEKYSKV 237 (335)
T ss_pred EecCCccCHHHHHHhhccceeeecccccCCHHHHHHhhcC
Confidence 663321 12334568999999999999999999998754
No 103
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=54.42 E-value=81 Score=22.85 Aligned_cols=89 Identities=13% Similarity=0.046 Sum_probs=49.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC-C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
.+.+|+=|||=+=+. .+.+..|..+++.+|+..... .++ . +|+..|.... +.....+||+|+++
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA---LEDSLPEPDRVFIG 95 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc---ChhhcCCCCEEEEC
Confidence 356888888753222 333445667899999975432 222 1 3444454321 12234589999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 178 PPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 178 PPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
.+... ...+-..+..++++ ++++++
T Consensus 96 ~~~~~---~~~~l~~~~~~Lk~-gG~li~ 120 (124)
T TIGR02469 96 GSGGL---LQEILEAIWRRLRP-GGRIVL 120 (124)
T ss_pred Ccchh---HHHHHHHHHHHcCC-CCEEEE
Confidence 75432 24555555555565 455655
No 104
>PRK05939 hypothetical protein; Provisional
Probab=53.55 E-value=82 Score=29.40 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=60.6
Q ss_pred cccCh---HHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH----HHhh-CCCCCceEEeecc--------cccccCCcce
Q 028404 90 FWYDA---VTAETVAQEAVSLCSDSDSRVACIACPTLYAY----LKKI-RPEVSPKILEYDM--------RFEQYGSDFA 153 (209)
Q Consensus 90 FWYSd---~Ta~~La~~l~~~a~~~~~rIaclstPSly~~----Lk~~-~~~~~~~LLE~D~--------RF~~~g~~Fv 153 (209)
|.|+. .|.+.|.+.+.++-+ .. .+|.++|-..+ +... .|+.++++.+..- ....+|-+.+
T Consensus 39 ~~Y~r~g~p~~~~lE~~la~leg---~~-~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~ 114 (397)
T PRK05939 39 FTYARQGTPTTAALEAKITKMEG---GV-GTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVT 114 (397)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhC---CC-eEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEE
Confidence 77776 899999999998843 22 23444433333 3222 4566677765431 2233455788
Q ss_pred eecCCCCCCchHhhcccccEEEECCC---CCCHHHHHHHHHHHH
Q 028404 154 FYDYNQPQDLPLELKHAFSVVVVDPP---YLSKECLEKVSETVS 194 (209)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPP---Flseec~~K~A~Tik 194 (209)
++|...++.|...+.....+|++.-| .+...=+++++..++
T Consensus 115 ~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~ 158 (397)
T PRK05939 115 MVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCR 158 (397)
T ss_pred EECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHH
Confidence 99987777777777666777777553 444433455554444
No 105
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=50.46 E-value=91 Score=28.22 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=51.7
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchH--HHHHHhh---------CC--CCCceEEee--------------cc
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKI---------RP--EVSPKILEY--------------DM 143 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSl--y~~Lk~~---------~~--~~~~~LLE~--------------D~ 143 (209)
++.-+....|++.+.+..+ ..++.++++=|- ..+|+-. .+ +.+++.++. |.
T Consensus 79 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~ 156 (401)
T PRK00854 79 AFRNDQLAPLYEELAALTG--SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDP 156 (401)
T ss_pred ccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCc
Confidence 3444677778888887753 345555544432 1122211 01 124555542 11
Q ss_pred ----cccccCCcceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 144 ----RFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 144 ----RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+|..++.++.+++++.+..|.+.+..+..+||+.||+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~ 199 (401)
T PRK00854 157 DARGGFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGE 199 (401)
T ss_pred cccccCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCC
Confidence 133333467888888887777666556679999999974
No 106
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=49.84 E-value=7.6 Score=36.58 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=22.7
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCCHH
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (209)
.|+.=|-..-+.++.--.-.+|+||+|||.-|..
T Consensus 165 sF~~gDv~~~~qll~~H~llpdlIIiDPPW~NKS 198 (366)
T KOG2356|consen 165 SFHVGDVKDIEQLLRAHDLLPDLIIIDPPWFNKS 198 (366)
T ss_pred ceecccHHHHHHHhHHHhhcCCeEEeCCCCCCcc
Confidence 5666565555555533233469999999999864
No 107
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=49.69 E-value=1.6e+02 Score=25.32 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=65.4
Q ss_pred ccccccccc-ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccc----c-c---------
Q 028404 82 SEDWRLSQF-WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR----F-E--------- 146 (209)
Q Consensus 82 ~EDwqlSQF-WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~R----F-~--------- 146 (209)
.+-|+..++ |=..+--..|++.+......++.||++++|=+=..++---..+-+|+=+|+-.. + .
T Consensus 7 d~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~ 86 (218)
T PRK13255 7 HEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTR 86 (218)
T ss_pred HHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCcccc
Confidence 355666776 445677777888765442224679999999854443211112446666665532 1 0
Q ss_pred ------cc-CC--cceeecCCCCCCchHhhcccccEEE-----ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 147 ------QY-GS--DFAFYDYNQPQDLPLELKHAFSVVV-----VDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 147 ------~~-g~--~FvfYDyn~P~~lp~~lk~~fD~Vv-----~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
.| +. .|..-|+-+. +....+.||.|+ + .+..+=.+++...+..|++++ +.+++
T Consensus 87 ~~~~~~~~~~~~v~~~~~D~~~l---~~~~~~~fd~v~D~~~~~---~l~~~~R~~~~~~l~~lL~pg-G~~~l 153 (218)
T PRK13255 87 QSGEFEHYQAGEITIYCGDFFAL---TAADLADVDAVYDRAALI---ALPEEMRERYVQQLAALLPAG-CRGLL 153 (218)
T ss_pred ccccccccccCceEEEECcccCC---CcccCCCeeEEEehHhHh---hCCHHHHHHHHHHHHHHcCCC-CeEEE
Confidence 11 11 3444444332 111124577665 4 344555688999999999984 44443
No 108
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=49.19 E-value=1.2e+02 Score=26.72 Aligned_cols=89 Identities=12% Similarity=0.269 Sum_probs=55.9
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C--CcceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G--SDFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g--~~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
..++|+=|||=+=.. .|.+ .+.+++.+|++...-.+ + -++..+|.+.+. +.++||+|++=-
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-----~~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-----IQEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-----ccCCccEEEEcc
Confidence 356999999875333 3333 24689999998754221 1 156777876542 257899988765
Q ss_pred C--CCCHHHHHHHHHHHHHhcCCCCCc-EEEe
Q 028404 179 P--YLSKECLEKVSETVSFLARPGDSK-LLLL 207 (209)
Q Consensus 179 P--Flseec~~K~A~Tik~L~k~~~~k-iilc 207 (209)
. |++.+-+..+...++.+++++ +. +|++
T Consensus 193 vl~~l~~~~~~~~l~~~~~~Lkpg-G~~l~v~ 223 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPG-GYNLIVC 223 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 4 445555667777777777874 45 4443
No 109
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=49.04 E-value=15 Score=34.57 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=18.7
Q ss_pred hcccccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 167 LKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 167 lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
|...-|+||+-|||-- .-+=+.+|.+-
T Consensus 132 Ll~eADIVVTNPPFSL------FrEyv~~Li~~ 158 (336)
T PF13651_consen 132 LLKEADIVVTNPPFSL------FREYVAQLIEY 158 (336)
T ss_pred HHhcCCEEEeCCCcHH------HHHHHHHHHHh
Confidence 4456899999999954 23445566654
No 110
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=48.76 E-value=8.7 Score=32.35 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=9.4
Q ss_pred ccEEEECCCCCCHHH
Q 028404 171 FSVVVVDPPYLSKEC 185 (209)
Q Consensus 171 fD~Vv~DPPFlseec 185 (209)
+|+|+++||.++.+-
T Consensus 70 ~D~vFlSPPWGGp~Y 84 (163)
T PF09445_consen 70 FDVVFLSPPWGGPSY 84 (163)
T ss_dssp -SEEEE---BSSGGG
T ss_pred ccEEEECCCCCCccc
Confidence 899999999998654
No 111
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=48.52 E-value=14 Score=31.66 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.2
Q ss_pred chHhhcccccEEEECCCCCCHH
Q 028404 163 LPLELKHAFSVVVVDPPYLSKE 184 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlsee 184 (209)
|...|..++++|||.|.-|++|
T Consensus 24 Le~ALe~~~~~IVIEP~~LGde 45 (165)
T PF14972_consen 24 LERALEAKVSYIVIEPTRLGDE 45 (165)
T ss_pred HHHHHHhCCCEEEECCccccHH
Confidence 3445677899999999999995
No 112
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=46.62 E-value=29 Score=28.48 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhc-------CCCCCeEEEEeC----chHHHHHHhhCCCCCceEEeecccccc-----------c-CC-
Q 028404 95 VTAETVAQEAVSLC-------SDSDSRVACIAC----PTLYAYLKKIRPEVSPKILEYDMRFEQ-----------Y-GS- 150 (209)
Q Consensus 95 ~Ta~~La~~l~~~a-------~~~~~rIaclst----PSly~~Lk~~~~~~~~~LLE~D~RF~~-----------~-g~- 150 (209)
+.+..|++.+.+.. ...+.+|+=||| |++..+.. ....++++=|++. --. . .+
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~--~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL--FGAARVVLTDYNE-VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc--cCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence 66777777777742 114677777765 57666655 2345788888877 211 0 11
Q ss_pred -cceeecCCCCCCchHh-h-cccccEEE-ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 151 -DFAFYDYNQPQDLPLE-L-KHAFSVVV-VDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~-l-k~~fD~Vv-~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+...|..++ ++.. + .++||+|| +|==|. +++.+.+..|++.|+++++ +||++
T Consensus 99 v~v~~L~Wg~~--~~~~~~~~~~~D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~-~vl~~ 155 (173)
T PF10294_consen 99 VSVRPLDWGDE--LDSDLLEPHSFDVILASDVLYD-EELFEPLVRTLKRLLKPNG-KVLLA 155 (173)
T ss_dssp -EEEE--TTS---HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-T-TEEEE
T ss_pred ccCcEEEecCc--ccccccccccCCEEEEecccch-HHHHHHHHHHHHHHhCCCC-EEEEE
Confidence 4667777765 3233 3 35799655 788776 4678999999999999844 47765
No 113
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=46.22 E-value=1.9e+02 Score=24.75 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=63.8
Q ss_pred cccccccccccC-hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccc-----c----------
Q 028404 82 SEDWRLSQFWYD-AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR-----F---------- 145 (209)
Q Consensus 82 ~EDwqlSQFWYS-d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~R-----F---------- 145 (209)
.+.|+..+++|+ .+....|++.+..+...++.||++++|=+=+.++-=...+-+|+=+|+=.. +
T Consensus 4 d~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~ 83 (213)
T TIGR03840 4 HERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVT 83 (213)
T ss_pred HHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCccee
Confidence 356777888876 556667777665542115679999999854443221112335555554221 0
Q ss_pred -----ccc-CC--cceeecCCCCCCchHhhcccccEEEECCC--CCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 146 -----EQY-GS--DFAFYDYNQPQDLPLELKHAFSVVVVDPP--YLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 146 -----~~~-g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP--Flseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..+ +. +|+.=|+-+. +....+.||.|+-=== -+..+=.+.+...+..|+++ ++.+++.
T Consensus 84 ~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp-gG~~ll~ 151 (213)
T TIGR03840 84 QQGEFTRYRAGNIEIFCGDFFAL---TAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP-GARQLLI 151 (213)
T ss_pred ccccceeeecCceEEEEccCCCC---CcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC-CCeEEEE
Confidence 111 11 3444444332 1111234554431100 13445567889999999998 4555554
No 114
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=46.03 E-value=9.7 Score=33.53 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=42.4
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCch------HHHHHHh---hCCCCCceEEeecccccc-------
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT------LYAYLKK---IRPEVSPKILEYDMRFEQ------- 147 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPS------ly~~Lk~---~~~~~~~~LLE~D~RF~~------- 147 (209)
..+..||+ +...+..|+-.++... .+.+|+=-+|=| ++..+++ .....+++-.|+|..-..
T Consensus 22 ~k~~G~~~-TP~~i~~l~~~~~~~~--~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 22 RKKLGQFY-TPREIVDLMVKLLNPK--KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp TTSCGGC----HHHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ccccceee-hHHHHHHHHHhhhhcc--ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34566775 5544444444444331 455677655542 2333321 134567888899986532
Q ss_pred -cCC--c---ceeecCCCCCCchHhh-cccccEEEECCCCCCH
Q 028404 148 -YGS--D---FAFYDYNQPQDLPLEL-KHAFSVVVVDPPYLSK 183 (209)
Q Consensus 148 -~g~--~---FvfYDyn~P~~lp~~l-k~~fD~Vv~DPPFlse 183 (209)
.|. . ...-|. ..-+... ...||+||+.|||+..
T Consensus 99 l~~~~~~~~~i~~~d~---l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDS---LENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-T---TTSHSCTST--EEEEEEE--CTCE
T ss_pred hhcccccccccccccc---ccccccccccccccccCCCCcccc
Confidence 121 1 122221 1111111 3579999999999987
No 115
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=45.89 E-value=1e+02 Score=25.37 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cCC---cceeecCC
Q 028404 93 DAVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YGS---DFAFYDYN 158 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g~---~FvfYDyn 158 (209)
+...+..+.+.+...-. ..+.+|+=|||-+=+. .+.+. ..+++..|.+..... .+. .|..-|.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~- 102 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV- 102 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH-
Confidence 44556667766664300 0356888888875443 33332 345888888764321 111 1222222
Q ss_pred CCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 159 QPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 159 ~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+++....++||+|++.-.+....-...+-..++.++++ ++.|++.+
T Consensus 103 --~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~-gG~l~i~~ 149 (224)
T TIGR01983 103 --EDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKP-GGILFFST 149 (224)
T ss_pred --HHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCC-CcEEEEEe
Confidence 122222246899998754332221122333334444455 45666654
No 116
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=45.66 E-value=1.2e+02 Score=26.85 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=53.9
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHh---hCCCCCceEEeecccccccCC-cceeecCC-------
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK---IRPEVSPKILEYDMRFEQYGS-DFAFYDYN------- 158 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~---~~~~~~~~LLE~D~RF~~~g~-~FvfYDyn------- 158 (209)
-+=+.++.+.|...+... +.++|+=|||=+=|-.|.= ..++.+++-+|+|..+..++. .|-...+.
T Consensus 61 ~~~~~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred CccCHHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 455678888887776555 5789999999877775531 224568999999987655532 22222211
Q ss_pred -CCCC-chHhh-----cccccEEEECC
Q 028404 159 -QPQD-LPLEL-----KHAFSVVVVDP 178 (209)
Q Consensus 159 -~P~~-lp~~l-----k~~fD~Vv~DP 178 (209)
...+ ||.-. .++||+|++|=
T Consensus 138 G~a~e~L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 138 GPALPVLDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred ccHHHHHHHHHhccccCCcccEEEecC
Confidence 1122 23211 36899999994
No 117
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=45.39 E-value=87 Score=26.86 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=51.7
Q ss_pred CCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
...+|+=|||=+=+..+.-...+.+++.+|+...... .| . .|+.-|..+ ++....++||+|++.-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~---l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD---IAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH---HhhhcCCCCCEEEehh
Confidence 4678998988866554322122468999999864432 22 1 344445432 3333457899999765
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 PYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 PFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+-.-+-...+-..+..+++| ++.|+++
T Consensus 121 vl~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 148 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRP-GGALSLM 148 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCC-CeEEEEE
Confidence 542110013444455566676 4566654
No 118
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=45.15 E-value=97 Score=25.89 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=52.4
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C-C--cceeecCCCCCCchHhh-cccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQDLPLEL-KHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~ 176 (209)
+..+|+=|||=+=+. .|.+..|..+++.+|++.....+ + + +|+.-|.. ..++..+ .++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV--EVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH--HHHHHHcCccccceEEE
Confidence 356788787774433 34444577789999998743322 1 1 34555541 1244334 467998888
Q ss_pred C---CCCCCHH-----HHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 D---PPYLSKE-----CLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 D---PPFlsee-----c~~K~A~Tik~L~k~~~~kiilcT 208 (209)
. |.+.... -...+-..+..++++ ++.|+++|
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~~ 156 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKP-GGEIHFAT 156 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCC-CCEEEEEc
Confidence 4 4332110 013344555566676 45677764
No 119
>PRK06234 methionine gamma-lyase; Provisional
Probab=45.05 E-value=42 Score=31.13 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=52.4
Q ss_pred ccccC---hHHHHHHHHHHHhhcCCCCCeEEEEe--CchHHHHHHhh-CCCCCceEEeec--ccc-------cccCCcce
Q 028404 89 QFWYD---AVTAETVAQEAVSLCSDSDSRVACIA--CPTLYAYLKKI-RPEVSPKILEYD--MRF-------EQYGSDFA 153 (209)
Q Consensus 89 QFWYS---d~Ta~~La~~l~~~a~~~~~rIacls--tPSly~~Lk~~-~~~~~~~LLE~D--~RF-------~~~g~~Fv 153 (209)
-|+|+ +.|...|.+.+.+..+ ...+++++ +..++..+... .|+..+++-+.. .-| ..+|-+.+
T Consensus 55 ~~~Y~r~~~p~~~~Le~~iA~~~g--~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~ 132 (400)
T PRK06234 55 GYIYSRLGNPTSTEVENKLALLEG--GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVT 132 (400)
T ss_pred CCcccCCCCccHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEE
Confidence 46788 8899999999988864 23333332 22333333332 355556555421 111 22455788
Q ss_pred eecCCCCCCchHhhcccccEEEECCC
Q 028404 154 FYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++|...|+.+...+....++|++.=|
T Consensus 133 ~vd~~d~e~l~~~i~~~tklI~iesP 158 (400)
T PRK06234 133 FVDTSNLEEVRNALKANTKVVYLETP 158 (400)
T ss_pred EECCCCHHHHHHHhccCCeEEEEECC
Confidence 89988777777666656677775544
No 120
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=44.97 E-value=1.1e+02 Score=25.75 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=50.6
Q ss_pred CCCeEEEEeCchHHHHH--Hhh-CCCCCceEEeeccccccc--------C-C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~~L--k~~-~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=|=|... .+. .+..+++-+|++..+..+ | + .|+.-|.... .+. .+.||+|++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~--~~~--~~~fD~I~~ 151 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG--YEE--NAPYDRIYV 151 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC--CCc--CCCcCEEEE
Confidence 67899999999888753 333 234589999999765532 2 1 3555554432 111 257999988
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
+=-+ . .+-..+.-.+++ +++|++
T Consensus 152 ~~~~--~----~~~~~l~~~Lkp-gG~lvi 174 (212)
T PRK13942 152 TAAG--P----DIPKPLIEQLKD-GGIMVI 174 (212)
T ss_pred CCCc--c----cchHHHHHhhCC-CcEEEE
Confidence 6321 2 222344445666 456655
No 121
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=43.58 E-value=32 Score=26.94 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=8.7
Q ss_pred CCCceEEeeccccc
Q 028404 133 EVSPKILEYDMRFE 146 (209)
Q Consensus 133 ~~~~~LLE~D~RF~ 146 (209)
+.++.|+|.|.+..
T Consensus 28 g~~vllvD~D~~~~ 41 (179)
T cd02036 28 GYKVVLIDADLGLR 41 (179)
T ss_pred CCeEEEEeCCCCCC
Confidence 45677777776543
No 122
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=43.14 E-value=14 Score=28.13 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=13.1
Q ss_pred cccEEEECCCCCCHH
Q 028404 170 AFSVVVVDPPYLSKE 184 (209)
Q Consensus 170 ~fD~Vv~DPPFlsee 184 (209)
+||+||--|||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 599999999999764
No 123
>PLN03075 nicotianamine synthase; Provisional
Probab=42.91 E-value=1.7e+02 Score=27.02 Aligned_cols=119 Identities=20% Similarity=0.135 Sum_probs=65.0
Q ss_pred cccc-ccccccChHHHHHHHHHH--H-hhcCCCCCeEEEEeCc----hHHHHHHhhCCCCCceEEeeccccc--------
Q 028404 83 EDWR-LSQFWYDAVTAETVAQEA--V-SLCSDSDSRVACIACP----TLYAYLKKIRPEVSPKILEYDMRFE-------- 146 (209)
Q Consensus 83 EDwq-lSQFWYSd~Ta~~La~~l--~-~~a~~~~~rIaclstP----Sly~~Lk~~~~~~~~~LLE~D~RF~-------- 146 (209)
.-|. |.-|=|=.+-....--+. + .......++|+.|||= |....+....|+..++-+|+|..-.
T Consensus 91 ~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 91 NPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred cHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhh
Confidence 4444 444656555444332221 1 1111156899999998 4444454556777899999996221
Q ss_pred c-c--CC--cceeecCCCCCCchHhhcccccEEEECCCCC---CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 147 Q-Y--GS--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL---SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 147 ~-~--g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl---seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
. . +. .|..=|-.+. +.. .+.||+|+++ -+ ..+=-.++-.-+...+++ |+.+++-+
T Consensus 171 ~~~gL~~rV~F~~~Da~~~---~~~-l~~FDlVF~~--ALi~~dk~~k~~vL~~l~~~LkP-GG~Lvlr~ 233 (296)
T PLN03075 171 SDPDLSKRMFFHTADVMDV---TES-LKEYDVVFLA--ALVGMDKEEKVKVIEHLGKHMAP-GALLMLRS 233 (296)
T ss_pred hccCccCCcEEEECchhhc---ccc-cCCcCEEEEe--cccccccccHHHHHHHHHHhcCC-CcEEEEec
Confidence 1 1 11 5665555432 111 3579999999 32 112124555556666666 45666644
No 124
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=42.30 E-value=1.3e+02 Score=22.54 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=37.2
Q ss_pred CCCceEEeecccccccCCcceeecCCCCCCch-Hhhccccc--EEEECCCCCCHHHHHHHHHHHHHhc
Q 028404 133 EVSPKILEYDMRFEQYGSDFAFYDYNQPQDLP-LELKHAFS--VVVVDPPYLSKECLEKVSETVSFLA 197 (209)
Q Consensus 133 ~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp-~~lk~~fD--~Vv~DPPFlseec~~K~A~Tik~L~ 197 (209)
+.+++|+|.|.++.. +|+..|-.--.... ..+-...| +|+++|-..+.. .+...+++|.
T Consensus 29 ~~~~~l~d~d~~~~~---D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~~s~~---~~~~~~~~l~ 90 (106)
T cd03111 29 GRRVLLVDLDLQFGD---DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIR---NAKRLLELLR 90 (106)
T ss_pred CCcEEEEECCCCCCC---CEEEEeCCCCcCHHHHHHHHHcCeEEEEecCChHHHH---HHHHHHHHHH
Confidence 678999999999854 79999974322211 22223345 666888877764 4444454443
No 125
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=42.22 E-value=14 Score=31.30 Aligned_cols=14 Identities=43% Similarity=0.752 Sum_probs=8.4
Q ss_pred ccccEEEECCCCCC
Q 028404 169 HAFSVVVVDPPYLS 182 (209)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (209)
.+-|+|.+||||..
T Consensus 176 ~~~d~vYlDPPY~~ 189 (260)
T PF02086_consen 176 SPNDFVYLDPPYYS 189 (260)
T ss_dssp TTE-EEEE--S-TT
T ss_pred CCCeEEEEcCcccc
Confidence 45789999999998
No 126
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=41.72 E-value=1.3e+02 Score=27.48 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeeccc----------ccccCCcceeecCCCCCCc
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMR----------FEQYGSDFAFYDYNQPQDL 163 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~R----------F~~~g~~FvfYDyn~P~~l 163 (209)
+|.+.-.+.+.+... ++++|+=|||=|=-=+|-.. ..-.+++-+|+|.- ......++..+ .+.++
T Consensus 146 ~TT~lcl~~l~~~~~-~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVK-PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSS-TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCT
T ss_pred HHHHHHHHHHHHhcc-CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---Eeccc
Confidence 466667777777765 78899999999644333221 23347999999972 22222234333 22333
Q ss_pred hHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+ +++||+||+- +..+.+..++..+..++++ ++.+|+|
T Consensus 222 ~---~~~~dlvvAN---I~~~vL~~l~~~~~~~l~~-~G~lIlS 258 (295)
T PF06325_consen 222 V---EGKFDLVVAN---ILADVLLELAPDIASLLKP-GGYLILS 258 (295)
T ss_dssp C---CS-EEEEEEE---S-HHHHHHHHHHCHHHEEE-EEEEEEE
T ss_pred c---cccCCEEEEC---CCHHHHHHHHHHHHHhhCC-CCEEEEc
Confidence 3 3889999987 7788888999988888887 4456654
No 127
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.57 E-value=35 Score=29.93 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=31.1
Q ss_pred HhhcccccEEE-ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 165 LELKHAFSVVV-VDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 165 ~~lk~~fD~Vv-~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
....++||+|+ +|==|..|- -+.++.||+.|++|.+.-++.
T Consensus 98 q~eq~tFDiIlaADClFfdE~-h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFDEH-HESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred HHhhCcccEEEeccchhHHHH-HHHHHHHHHHHhCcccceeEe
Confidence 34567899555 799999875 488999999999996543443
No 128
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=39.31 E-value=94 Score=26.80 Aligned_cols=88 Identities=24% Similarity=0.192 Sum_probs=55.7
Q ss_pred cccccccc-cChHHHHHHHHHHHhhcCCCCCeEEEEeCc--hHHHHHHhhCCCCCceEEeecccccccC-------C--c
Q 028404 84 DWRLSQFW-YDAVTAETVAQEAVSLCSDSDSRVACIACP--TLYAYLKKIRPEVSPKILEYDMRFEQYG-------S--D 151 (209)
Q Consensus 84 DwqlSQFW-YSd~Ta~~La~~l~~~a~~~~~rIaclstP--Sly~~Lk~~~~~~~~~LLE~D~RF~~~g-------~--~ 151 (209)
.+.+.|.+ -+.+.++.+++.+.-. ++.+|+=|||= .+-..|.+.. .+++.+|+|.++.... + +
T Consensus 4 ~k~~gq~fl~d~~i~~~i~~~~~~~---~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~ 78 (253)
T TIGR00755 4 RKSLGQNFLIDESVIQKIVEAANVL---EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLE 78 (253)
T ss_pred CCCCCCccCCCHHHHHHHHHhcCCC---CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEE
Confidence 46788844 6677777777765322 56788888865 5555666543 3699999999885431 1 2
Q ss_pred ceeecCCCCCCchHhhccccc---EEEECCCCCC
Q 028404 152 FAFYDYNQPQDLPLELKHAFS---VVVVDPPYLS 182 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD---~Vv~DPPFls 182 (209)
++.-|..+.. ++ .+| +||.-|||--
T Consensus 79 v~~~D~~~~~-~~-----~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 79 VIEGDALKVD-LP-----DFPKQLKVVSNLPYNI 106 (253)
T ss_pred EEECchhcCC-hh-----HcCCcceEEEcCChhh
Confidence 3444543321 11 355 9999999853
No 129
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=37.82 E-value=86 Score=27.46 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=29.3
Q ss_pred ccEEEECCCC---CCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 171 FSVVVVDPPY---LSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 171 fD~Vv~DPPF---lseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
.-+.+-.|+- ++.+.+..+.+.++.+......|+|+.||
T Consensus 23 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg 64 (268)
T PRK07327 23 LEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRG 64 (268)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEEC
Confidence 3455667775 57888888999999988765568888776
No 130
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=37.73 E-value=27 Score=32.28 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCeEEEEeCch--HHHHHHhhCCCCCceEEeecccccccCC-cceee-cCC---------CCCCchHhh---cccccEEE
Q 028404 112 DSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYGS-DFAFY-DYN---------QPQDLPLEL---KHAFSVVV 175 (209)
Q Consensus 112 ~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~g~-~FvfY-Dyn---------~P~~lp~~l---k~~fD~Vv 175 (209)
..+|+=|||=+ ||-.|-...++.+++..|+|..-..... +.-.. .+. .+..+...+ .+.||+||
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 45777777774 7776655455678899999985433310 01000 011 111122222 34799999
Q ss_pred ECCCCCCHH
Q 028404 176 VDPPYLSKE 184 (209)
Q Consensus 176 ~DPPFlsee 184 (209)
+-|||....
T Consensus 195 cNPPf~~s~ 203 (321)
T PRK11727 195 CNPPFHASA 203 (321)
T ss_pred eCCCCcCcc
Confidence 999999753
No 131
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=37.61 E-value=1.7e+02 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=21.0
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCC
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL 181 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (209)
++.++.|+.+..+...+.....+||++||..
T Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~aviiep~~~ 194 (398)
T PRK03244 164 GVEHVPYGDVDALAAAVDDDTAAVFLEPIQG 194 (398)
T ss_pred CceEeCCCCHHHHHHhhcCCeEEEEEecccC
Confidence 4566666666555555555667999999964
No 132
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=37.53 E-value=37 Score=31.31 Aligned_cols=48 Identities=13% Similarity=-0.029 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchH--HHHHHhhCCCCCceEEeecc
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDM 143 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~ 143 (209)
....+.|.+.+.+.+...+.+|+=++|=+= -..|.+.. .+++..|++.
T Consensus 180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~ 229 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF--RRVLATEIAK 229 (353)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC--CEEEEEECCH
Confidence 555677777777765312346766666543 33444322 3688888776
No 133
>PRK08317 hypothetical protein; Provisional
Probab=37.11 E-value=1.5e+02 Score=23.96 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCCeEEEEeCchHHH--HHHhhC-CCCCceEEeeccccccc--------CC--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIR-PEVSPKILEYDMRFEQY--------GS--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~-~~~~~~LLE~D~RF~~~--------g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||-+=.. .+.... +..+++.+|.+.....+ +. .|..-|.... .++ .++||+|++.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~---~~~~D~v~~~ 94 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFP---DGSFDAVRSD 94 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCC---CCCceEEEEe
Confidence 467898888874333 333333 55688999988654221 11 3443343321 111 3679999987
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
--+..-.=+..+-..+..++++ ++.|++.
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~ 123 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRP-GGRVVVL 123 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcC-CcEEEEE
Confidence 5553311124444555666676 4566653
No 134
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=36.90 E-value=3.1e+02 Score=24.50 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=23.6
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
++.++.++.+..+.+.+......||++|+...
T Consensus 148 ~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~ 179 (377)
T PRK02936 148 GFTHVPFNDIKALKEVMNEEVAAVMLEVVQGE 179 (377)
T ss_pred CceEeCCCCHHHHHHhccCCeEEEEEecccCC
Confidence 56677787776666666666789999998753
No 135
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=36.13 E-value=1.4e+02 Score=26.16 Aligned_cols=93 Identities=19% Similarity=0.074 Sum_probs=56.4
Q ss_pred cccccccc-cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchH--HHHHHhhCCCCCceEEeecccccccC------C--
Q 028404 82 SEDWRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRFEQYG------S-- 150 (209)
Q Consensus 82 ~EDwqlSQ-FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~RF~~~g------~-- 150 (209)
.-...+.| |--+...++.+++.+.-. ++.+|+=|||-+= -..|.+.. .+++.+|+|.++.... +
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~---~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v 89 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGPQ---PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNL 89 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCCC---CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCce
Confidence 44567788 444666667666655221 5678999998843 33444433 3899999999887541 1
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
+++.=|+.+- .++. +. ++.||.-|||.--
T Consensus 90 ~~i~~D~~~~-~~~~-~~--~~~vv~NlPY~is 118 (272)
T PRK00274 90 TIIEGDALKV-DLSE-LQ--PLKVVANLPYNIT 118 (272)
T ss_pred EEEEChhhcC-CHHH-cC--cceEEEeCCccch
Confidence 2334443321 1221 11 5899999999653
No 136
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=35.58 E-value=1.2e+02 Score=27.99 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=47.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC----------C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG----------S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g----------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=+. .|.+ .+.+++.+|.......+. . +|+.=|. +++|. -.++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da---e~l~~-~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA---EKLAD-EGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH---HHhhh-ccCCCCEEEE
Confidence 356899999975443 3333 356899999986433221 0 2333222 22331 2468998884
Q ss_pred --------CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 --------DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 --------DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|| . .+-..+.-++|+ ++.|+++|
T Consensus 205 ~~vLeHv~d~----~----~~L~~l~r~LkP-GG~liist 235 (322)
T PLN02396 205 LEVIEHVANP----A----EFCKSLSALTIP-NGATVLST 235 (322)
T ss_pred hhHHHhcCCH----H----HHHHHHHHHcCC-CcEEEEEE
Confidence 43 1 333445566777 56788876
No 137
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=34.79 E-value=41 Score=24.38 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCCceEEeecccccccC---------C-cceeecCCCCCCchHhhcccccEEEE--C-CCCCCHHHHHHHHHHHHHhcC
Q 028404 132 PEVSPKILEYDMRFEQYG---------S-DFAFYDYNQPQDLPLELKHAFSVVVV--D-PPYLSKECLEKVSETVSFLAR 198 (209)
Q Consensus 132 ~~~~~~LLE~D~RF~~~g---------~-~FvfYDyn~P~~lp~~lk~~fD~Vv~--D-PPFlseec~~K~A~Tik~L~k 198 (209)
|..+++.+|++...-.++ . +|+.=|+.+ +| ...++||+|++ - ..+++.+=++++-+.+..+++
T Consensus 23 ~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~---l~-~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 23 PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD---LP-FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLR 98 (101)
T ss_dssp --SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC---HH-HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEE
T ss_pred ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH---Cc-ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhC
Confidence 346888899888654331 1 566666643 54 35668999998 3 567787666777777766666
Q ss_pred C
Q 028404 199 P 199 (209)
Q Consensus 199 ~ 199 (209)
|
T Consensus 99 p 99 (101)
T PF13649_consen 99 P 99 (101)
T ss_dssp E
T ss_pred C
Confidence 5
No 138
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=32.76 E-value=2.9e+02 Score=24.88 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=21.0
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCC
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL 181 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (209)
+|.++.|+.+..+.+.+......||+.|+..
T Consensus 156 ~~~~~~~~d~~~l~~~l~~~~~avivep~~~ 186 (389)
T PRK01278 156 GFDQVPFGDIEALKAAITPNTAAILIEPIQG 186 (389)
T ss_pred CceEeCCCCHHHHHHhhCCCeEEEEEecccC
Confidence 3555666666666555655677999999964
No 139
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=32.68 E-value=21 Score=37.40 Aligned_cols=15 Identities=47% Similarity=1.023 Sum_probs=13.0
Q ss_pred ccccEEEECCCCCCH
Q 028404 169 HAFSVVVVDPPYLSK 183 (209)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (209)
.+||+||+||||--.
T Consensus 488 ekfd~IVtDPPY~Dd 502 (875)
T COG1743 488 EKFDVIVTDPPYYDD 502 (875)
T ss_pred ccCceeecCCCcccC
Confidence 579999999999755
No 140
>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]
Probab=32.35 E-value=25 Score=34.97 Aligned_cols=16 Identities=38% Similarity=0.885 Sum_probs=13.2
Q ss_pred HhhcccccEEEECCCC
Q 028404 165 LELKHAFSVVVVDPPY 180 (209)
Q Consensus 165 ~~lk~~fD~Vv~DPPF 180 (209)
...-|+|-||++|||+
T Consensus 384 m~iLGkFaVVmADPpW 399 (591)
T KOG2098|consen 384 MSILGKFAVVMADPPW 399 (591)
T ss_pred eeeeceeEEEeeCCCc
Confidence 3456899999999985
No 141
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=32.18 E-value=72 Score=29.47 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=42.5
Q ss_pred CCCeEEEEeCchHHHHHHhhCCC-CCceEEeecccccccCC--cce--eecCC------CCCCchHhhc-ccccEEEECC
Q 028404 111 SDSRVACIACPTLYAYLKKIRPE-VSPKILEYDMRFEQYGS--DFA--FYDYN------QPQDLPLELK-HAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk~~~~~-~~~~LLE~D~RF~~~g~--~Fv--fYDyn------~P~~lp~~lk-~~fD~Vv~DP 178 (209)
.+.+|+=.|+=-=|.++.....+ ..++=+|-|.---.... -+. .++-+ .-.++=..|. .+||+||-||
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 46788888888777777654223 25666666653222210 000 00000 0000112232 4699999999
Q ss_pred CCCCHHHHHHHHHH
Q 028404 179 PYLSKECLEKVSET 192 (209)
Q Consensus 179 PFlseec~~K~A~T 192 (209)
|=+|.-- +-+++-
T Consensus 214 PRfS~Ag-eLYsee 226 (287)
T COG2521 214 PRFSLAG-ELYSEE 226 (287)
T ss_pred Cccchhh-hHhHHH
Confidence 9988654 555543
No 142
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=31.59 E-value=2.7e+02 Score=24.64 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=21.6
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCC
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL 181 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (209)
++.+.++|.+..+.+.+.....+|++.|+..
T Consensus 151 ~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~ 181 (379)
T TIGR00707 151 GFSYAPYNDIESLKKAIDDETAAVIVEPIQG 181 (379)
T ss_pred CceeeCCCCHHHHHHHhhhCeeEEEEEcccc
Confidence 4566677766666666655567888898863
No 143
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.38 E-value=1.7e+02 Score=23.18 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCc
Q 028404 97 AETVAQEAVSLCSDSDSRVACIACP 121 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclstP 121 (209)
+..|+..+.+ .+.+|++|+++
T Consensus 17 ~~~la~~~~~----~g~~v~~i~~D 37 (173)
T cd03115 17 AAKLALYLKK----KGKKVLLVAAD 37 (173)
T ss_pred HHHHHHHHHH----CCCcEEEEEcC
Confidence 3444544433 24678888887
No 144
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=30.88 E-value=62 Score=23.39 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCCceEEeecccccccCCcceeecCCCCCC-chHhhccccc--EEEECCCCCCHHHHHHHHHHHH
Q 028404 132 PEVSPKILEYDMRFEQYGSDFAFYDYNQPQD-LPLELKHAFS--VVVVDPPYLSKECLEKVSETVS 194 (209)
Q Consensus 132 ~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~-lp~~lk~~fD--~Vv~DPPFlseec~~K~A~Tik 194 (209)
.+.+++++|.|.. | +|+..|...-.. ....+-...| +|+++|-..+- ..+.+.++
T Consensus 27 ~~~~vl~~d~d~~---~--d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~s~---~~~~~~~~ 84 (104)
T cd02042 27 RGKRVLLIDLDPQ---Y--DYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDL---DGLEKLLE 84 (104)
T ss_pred CCCcEEEEeCCCC---C--CEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHHHH---HHHHHHHH
Confidence 4678999999988 3 588888632211 1122223345 55667755543 44555544
No 145
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.73 E-value=2e+02 Score=27.43 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=43.5
Q ss_pred CCeEEEEeCc-----hHHHH----HHhhCCCCCceEEeecc-c------ccccCC--cceeecCCCCCCchHhhc--ccc
Q 028404 112 DSRVACIACP-----TLYAY----LKKIRPEVSPKILEYDM-R------FEQYGS--DFAFYDYNQPQDLPLELK--HAF 171 (209)
Q Consensus 112 ~~rIaclstP-----Sly~~----Lk~~~~~~~~~LLE~D~-R------F~~~g~--~FvfYDyn~P~~lp~~lk--~~f 171 (209)
+..|+++|-+ |+-.. +.....+.++.|++.|. | ...|+. +.-++-...|.++...+. ..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4578888866 22222 22112456899999997 2 222321 222222334444444442 358
Q ss_pred cEEEECCCCCC-HHHHHHHHHHHHHhc
Q 028404 172 SVVVVDPPYLS-KECLEKVSETVSFLA 197 (209)
Q Consensus 172 D~Vv~DPPFls-eec~~K~A~Tik~L~ 197 (209)
|+||+|=|=.+ .+ ...+.+..++|.
T Consensus 301 DlVlIDt~G~~~~d-~~~~~~L~~ll~ 326 (424)
T PRK05703 301 DVILIDTAGRSQRD-KRLIEELKALIE 326 (424)
T ss_pred CEEEEeCCCCCCCC-HHHHHHHHHHHh
Confidence 99999966333 32 233334444444
No 146
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=30.58 E-value=4.3e+02 Score=24.80 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccccc--------CC--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY--------GS--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~--------g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
++.+|+=|||=+=. ..|.+. .+.+++-+|+......+ +. .|..-|+..+. +| .++||+|++--
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~---~~~fD~I~s~~ 340 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN-FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YP---DNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CC---CCCEEEEEECC
Confidence 56799999987433 234432 25578999998533211 11 46667765431 33 25799999854
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 179 PYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 179 PFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-+.--.=..++-.-+..++++ +++|++++
T Consensus 341 ~l~h~~d~~~~l~~~~r~Lkp-gG~l~i~~ 369 (475)
T PLN02336 341 TILHIQDKPALFRSFFKWLKP-GGKVLISD 369 (475)
T ss_pred cccccCCHHHHHHHHHHHcCC-CeEEEEEE
Confidence 333211013444445556666 56777753
No 147
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=30.09 E-value=83 Score=28.54 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=50.1
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHH----hh-CCCCCceEEe--ecc------c-ccccCCcceeecC
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK----KI-RPEVSPKILE--YDM------R-FEQYGSDFAFYDY 157 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk----~~-~~~~~~~LLE--~D~------R-F~~~g~~FvfYDy 157 (209)
|...|...|.+.+.+..+ ... ++.++|-..++. .. .++.++++-. |-. + ...+|-+..++|.
T Consensus 37 ~~~p~~~~le~~la~l~g--~~~--a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 37 IGNPTVDALEKKLAALEG--GEA--ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred CCChhHHHHHHHHHHHHC--CCC--EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 457889999998888753 222 344454444332 22 2444444433 111 1 1124447788898
Q ss_pred CCCCCchHhhcccccEEEECCCC
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPY 180 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPF 180 (209)
+.+..+.+.++....+|+++.|.
T Consensus 113 ~d~~~l~~~i~~~~~~v~~e~~~ 135 (369)
T cd00614 113 DDPEALEAAIKPETKLVYVESPT 135 (369)
T ss_pred CCHHHHHHhcCCCCeEEEEECCC
Confidence 87777766676667789988876
No 148
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=29.89 E-value=3.6e+02 Score=23.11 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=52.7
Q ss_pred CCCeEEEEeCchHH--HHHHh--hCCCCCceEEeeccccccc--------C--C--cceeecCCCCCCchHhhcccccEE
Q 028404 111 SDSRVACIACPTLY--AYLKK--IRPEVSPKILEYDMRFEQY--------G--S--DFAFYDYNQPQDLPLELKHAFSVV 174 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~--~~~~~~~~LLE~D~RF~~~--------g--~--~FvfYDyn~P~~lp~~lk~~fD~V 174 (209)
++.+|+-|||=+=. ..|.+ ..|+.+++.+|.+...... + . +|+.-|... +| ...+|+|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~---~~---~~~~D~v 129 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD---IA---IENASMV 129 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh---CC---CCCCCEE
Confidence 57899999886433 33443 2467789999998754432 1 1 233333321 22 1358888
Q ss_pred EECCC--CCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 175 VVDPP--YLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 175 v~DPP--Flseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|+--. |+..+=...+-..+...+++ ++.++++
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~Lkp-GG~l~l~ 163 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNP-GGALVLS 163 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 87544 34433235666677777787 5567765
No 149
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=28.86 E-value=32 Score=31.28 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=20.1
Q ss_pred cc-cEEEECCCCCCH----------------HHHHHHHHHHHHhcCC
Q 028404 170 AF-SVVVVDPPYLSK----------------ECLEKVSETVSFLARP 199 (209)
Q Consensus 170 ~f-D~Vv~DPPFlse----------------ec~~K~A~Tik~L~k~ 199 (209)
+- |+|.+||||... +=+.-+|+.++.|...
T Consensus 173 ~~~dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~~~~~La~~~~~l~~~ 219 (274)
T COG0338 173 SGDDFVYCDPPYLPLSATSNFTAYGGNGFTEDQHLRLAEVLKELEGK 219 (274)
T ss_pred CCCcEEEeCCCCCccccccccccccCCCCChHHHHHHHHHHHhcccc
Confidence 45 799999999863 1233467777777444
No 150
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=28.80 E-value=2.8e+02 Score=27.11 Aligned_cols=80 Identities=26% Similarity=0.520 Sum_probs=48.1
Q ss_pred CeEEEEeCch------HHHHHHhhCCCCCceEEeecccccccCC--cceeecCCCCCCch-----HhhcccccEEEECC-
Q 028404 113 SRVACIACPT------LYAYLKKIRPEVSPKILEYDMRFEQYGS--DFAFYDYNQPQDLP-----LELKHAFSVVVVDP- 178 (209)
Q Consensus 113 ~rIaclstPS------ly~~Lk~~~~~~~~~LLE~D~RF~~~g~--~FvfYDyn~P~~lp-----~~lk~~fD~Vv~DP- 178 (209)
+-..||.+|+ ||.+|+..+++.++.+| ||+ .+. +.|.-+- -.++..||+||+|=
T Consensus 144 G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L--------yg~S~~~f----r~plvVaTtHQLlrFk~aFD~liIDEV 211 (441)
T COG4098 144 GGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL--------YGDSDSYF----RAPLVVATTHQLLRFKQAFDLLIIDEV 211 (441)
T ss_pred CCeEEEecCcccchHHHHHHHHHhhccCCeeeE--------ecCCchhc----cccEEEEehHHHHHHHhhccEEEEecc
Confidence 3456789996 46677766666666664 332 111 2444332 12466899999995
Q ss_pred ---CCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 ---PYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 ---PFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
||-...-+ -.+++.-.|+.+..|+|.
T Consensus 212 DAFP~~~d~~L---~~Av~~ark~~g~~IylT 240 (441)
T COG4098 212 DAFPFSDDQSL---QYAVKKARKKEGATIYLT 240 (441)
T ss_pred ccccccCCHHH---HHHHHHhhcccCceEEEe
Confidence 89887544 355666666655555553
No 151
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=28.43 E-value=2.7e+02 Score=30.11 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCeEEEEeCchHHHHHHhh----CCCCCceEEeecccc--cc----c-CCc--c--eeecCCCCCCchHhh-cccccEEE
Q 028404 112 DSRVACIACPTLYAYLKKI----RPEVSPKILEYDMRF--EQ----Y-GSD--F--AFYDYNQPQDLPLEL-KHAFSVVV 175 (209)
Q Consensus 112 ~~rIaclstPSly~~Lk~~----~~~~~~~LLE~D~RF--~~----~-g~~--F--vfYDyn~P~~lp~~l-k~~fD~Vv 175 (209)
.+.+++|+-+|+-..+.+. .|..+++++.-+.+- .. . .+. . +-|+.-.. -...| +..+++||
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~--e~~~L~k~~W~~VI 296 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIK--EKTALKRFSWRYII 296 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHH--HHHHhccCCCCEEE
Confidence 4567878777888776653 566677766544321 00 0 111 1 12332100 01223 34689999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+|=-..-....++.+.+++.|... ..|++||
T Consensus 297 vDEAHrIKN~~Sklskalr~L~a~---~RLLLTG 327 (1033)
T PLN03142 297 IDEAHRIKNENSLLSKTMRLFSTN---YRLLITG 327 (1033)
T ss_pred EcCccccCCHHHHHHHHHHHhhcC---cEEEEec
Confidence 998776444457889999998765 5677887
No 152
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=28.03 E-value=30 Score=29.73 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=12.7
Q ss_pred cccEEEECCCCCCH
Q 028404 170 AFSVVVVDPPYLSK 183 (209)
Q Consensus 170 ~fD~Vv~DPPFlse 183 (209)
++|+|++||||..-
T Consensus 35 svDli~tdppy~~~ 48 (302)
T COG0863 35 SVDLIFTDPPYNNV 48 (302)
T ss_pred ceeEEEcCCCcccc
Confidence 89999999999864
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=27.80 E-value=80 Score=27.86 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHh--hCC-CCCceEEeecccccccC-CcceeecCCCC---------
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK--IRP-EVSPKILEYDMRFEQYG-SDFAFYDYNQP--------- 160 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~--~~~-~~~~~LLE~D~RF~~~g-~~FvfYDyn~P--------- 160 (209)
++|...|.-.+... +.++|+=|||=.=|-+|.= ..| +.+++-+|+|..+.... .+|.-+....-
T Consensus 45 ~e~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 78888887776655 6799999999977776542 134 56899999999777653 24555554332
Q ss_pred CCchH-hhcccccEEEEC
Q 028404 161 QDLPL-ELKHAFSVVVVD 177 (209)
Q Consensus 161 ~~lp~-~lk~~fD~Vv~D 177 (209)
.+.-. .+.++||+|++|
T Consensus 122 l~~l~~~~~~~fDliFID 139 (219)
T COG4122 122 LDVLSRLLDGSFDLVFID 139 (219)
T ss_pred HHHHHhccCCCccEEEEe
Confidence 22222 245789999988
No 154
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=27.77 E-value=3.7e+02 Score=22.58 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=52.8
Q ss_pred CCCeEEEEeCchHHHHH--HhhCCCCCceEEeeccccccc--------C-CcceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQY--------G-SDFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~~L--k~~~~~~~~~LLE~D~RF~~~--------g-~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++.+|+=|||-+=+..+ ....+..+++.+|.+.....+ + ++..+..-+ ..+++. .++||+|++.-
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d-~~~~~~--~~~fDlV~~~~- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR-AEEFGQ--EEKFDVVTSRA- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc-HhhCCC--CCCccEEEEcc-
Confidence 36799999998766443 333567799999999754322 2 122222221 122332 46899999963
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 180 YLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 180 Flseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+.. ++.+...+..++++ ++++++.
T Consensus 121 ~~~---~~~~l~~~~~~Lkp-GG~lv~~ 144 (187)
T PRK00107 121 VAS---LSDLVELCLPLLKP-GGRFLAL 144 (187)
T ss_pred ccC---HHHHHHHHHHhcCC-CeEEEEE
Confidence 322 34556666667776 4566654
No 155
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=27.63 E-value=96 Score=25.19 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCCeEEEEe-CchHHHHHHhhCCCCCceEEeeccccccc-CCcceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIA-CPTLYAYLKKIRPEVSPKILEYDMRFEQY-GSDFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIacls-tPSly~~Lk~~~~~~~~~LLE~D~RF~~~-g~~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+.|| =+-+...|++ ...+++++|.+.+...= ...+ |..--+++...+|+||+
T Consensus 10 ~~~~V~~VG~f~P~~~~l~~--~~~~v~v~d~~~~~~~~~~~~~-------~~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 10 PGDKVGMVGYFQPLVEKLKE--RGAEVRVFDLNPDNIGEEPGDV-------PDEDAEEILPWADVVII 68 (147)
T ss_dssp TTSEEEEES--HCCHHHHCC--CCSEEEEEESSGGG--SSCT-E-------EGGGHHHHGGG-SEEEE
T ss_pred CCCEEEEEcCcHHHHHHHhc--CCCCEEEEECCCCCCCCCCCcC-------CHHHHHHHHccCCEEEE
Confidence 689999999 5337777874 45689999999966421 1112 33333455566887765
No 156
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=27.37 E-value=29 Score=32.01 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=8.8
Q ss_pred cccEEEECCCCCCHH
Q 028404 170 AFSVVVVDPPYLSKE 184 (209)
Q Consensus 170 ~fD~Vv~DPPFlsee 184 (209)
.+|+||+|||=-+-.
T Consensus 278 ~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 278 KFDAVILDPPRAGLD 292 (352)
T ss_dssp TESEEEE---TT-SC
T ss_pred CCCEEEEcCCCCCch
Confidence 589999999988743
No 157
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=27.27 E-value=4.3e+02 Score=23.20 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=64.2
Q ss_pred cccccChHHHHHHHHHHHhh----cC-CCCCeEEEEeCchHH------HHHHhhCC-----CCCceEEeecccccc----
Q 028404 88 SQFWYDAVTAETVAQEAVSL----CS-DSDSRVACIACPTLY------AYLKKIRP-----EVSPKILEYDMRFEQ---- 147 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~----a~-~~~~rIaclstPSly------~~Lk~~~~-----~~~~~LLE~D~RF~~---- 147 (209)
+.||=+.+.-..|.+.++.. .. .+.-||.++||=|=. ..|.+..+ +.+++-.|+|..--.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 45665677777777776432 11 134699999998543 34444322 457888888874221
Q ss_pred --cC------------------------------C--cceeecCCCCCCchHhhcccccEEEECC--CCCCHHHHHHHHH
Q 028404 148 --YG------------------------------S--DFAFYDYNQPQDLPLELKHAFSVVVVDP--PYLSKECLEKVSE 191 (209)
Q Consensus 148 --~g------------------------------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP--PFlseec~~K~A~ 191 (209)
|+ . .|...|..++. . ..++||+|++== -|++.+-..++..
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~-~---~~~~fD~I~crnvl~yf~~~~~~~~l~ 226 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAES-P---PLGDFDLIFCRNVLIYFDEPTQRKLLN 226 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCC-C---ccCCCCEEEechhHHhCCHHHHHHHHH
Confidence 11 0 35556665542 1 146899998710 1122222345555
Q ss_pred HHHHhcCCCCCcEEEe
Q 028404 192 TVSFLARPGDSKLLLL 207 (209)
Q Consensus 192 Tik~L~k~~~~kiilc 207 (209)
.+..++++ ++.+++.
T Consensus 227 ~l~~~L~p-GG~L~lg 241 (264)
T smart00138 227 RFAEALKP-GGYLFLG 241 (264)
T ss_pred HHHHHhCC-CeEEEEE
Confidence 66666676 5566664
No 158
>PLN02672 methionine S-methyltransferase
Probab=27.14 E-value=58 Score=35.18 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=44.3
Q ss_pred CCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc-------------------------CC--cceeecCCCCCC
Q 028404 112 DSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-------------------------GS--DFAFYDYNQPQD 162 (209)
Q Consensus 112 ~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~-------------------------g~--~FvfYDyn~P~~ 162 (209)
+.+|+=|||=|=... |.+..+..+++.+|++.+=... .. +|+.-|+.++.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~- 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC- 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-
Confidence 358988888876654 3444566688999988732211 01 45555665442
Q ss_pred chHhhcccccEEEECCCCCCHH
Q 028404 163 LPLELKHAFSVVVVDPPYLSKE 184 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlsee 184 (209)
+ ....+||+||.-|||+...
T Consensus 198 -~-~~~~~fDlIVSNPPYI~~~ 217 (1082)
T PLN02672 198 -R-DNNIELDRIVGCIPQILNP 217 (1082)
T ss_pred -c-ccCCceEEEEECCCcCCCc
Confidence 1 1223699999999999643
No 159
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=26.87 E-value=3.4e+02 Score=21.82 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=47.5
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCC-CCceEEeecccccccC-------C--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPE-VSPKILEYDMRFEQYG-------S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~-~~~~LLE~D~RF~~~g-------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
++.+|+-+||-+=.. .+.+..+. .+++.+|.+....... . +|+.=|..+ +| .-.++||+|++-=
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~-~~~~~~D~i~~~~ 114 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA---LP-FEDNSFDAVTIAF 114 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc---CC-CCCCcEEEEEEee
Confidence 467999998874333 33333443 5899999986543211 1 333333322 11 1135799887621
Q ss_pred CCCC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 PYLS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 PFls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
-+.. .+. ..+-+.++.++++ +++|+++
T Consensus 115 ~~~~~~~~-~~~l~~~~~~L~~-gG~l~~~ 142 (223)
T TIGR01934 115 GLRNVTDI-QKALREMYRVLKP-GGRLVIL 142 (223)
T ss_pred eeCCcccH-HHHHHHHHHHcCC-CcEEEEE
Confidence 1111 122 3444555566676 5577764
No 160
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=26.20 E-value=1.6e+02 Score=28.14 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCeEEEE--eCchHHHHHHhhCCCCCceEEeecccccccCCcceeecCCCCCCchHhh----cccccEEEECCCCCCH
Q 028404 112 DSRVACI--ACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLEL----KHAFSVVVVDPPYLSK 183 (209)
Q Consensus 112 ~~rIacl--stPSly~~Lk~~~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp~~l----k~~fD~Vv~DPPFlse 183 (209)
+.+||++ +.+.+|..+.+. .-.|.+||+.+| ++..+ ....++|+.=|-++..
T Consensus 143 g~r~a~~~~~~~~ly~~~~~~------------------~~~~~~~~l~~~--~~~~l~~L~~~~P~~L~g~pS~l~~ 200 (430)
T TIGR02304 143 KHRIAFFLRADNNLYQSVNNR------------------WISLDFFDLLAP--FQAHIKRLNQRKPSIIVAPPSVLRA 200 (430)
T ss_pred CCcEEEEEccChhHHHHHHhc------------------cceeeecCCCcC--HHHHHHHHHHhCCCEEEEcHHHHHH
Confidence 4678888 455666655431 014778888855 55544 3356788887766644
No 161
>PRK06922 hypothetical protein; Provisional
Probab=25.75 E-value=4.5e+02 Score=27.29 Aligned_cols=93 Identities=9% Similarity=0.095 Sum_probs=55.3
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccc--------cCC--cceeecCCCCCCchHhh-cccccEEEEC
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQ--------YGS--DFAFYDYNQPQDLPLEL-KHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~--------~g~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~D 177 (209)
++.+|+=|||=+=. ..|....|+.+++-+|+....-. .+. +++.-|... +|..+ .++||+|++-
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~d---Lp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAIN---LSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHh---CccccCCCCEEEEEEc
Confidence 46789888887543 35555568889999999875321 111 233345432 34333 3679999987
Q ss_pred CCCC-------------CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPYL-------------SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPFl-------------seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+++- +.+...++-+.+...+|+ |+++|+.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP-GGrLII~ 536 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP-GGRIIIR 536 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 6542 122334555555556676 5577765
No 162
>PF01974 tRNA_int_endo: tRNA intron endonuclease, catalytic C-terminal domain; InterPro: IPR006677 This entry represents a 3-layer alpha/beta/alpha domain found as the catalytic domain at the C-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 2 and 4 (C-terminal) in the homodimeric enzymes []. tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 3IEY_B 3IF0_X 2CV8_A 3P1Z_B 3AJV_B 2GJW_D 1R0V_A 3P1Y_C 1R11_B 1RLV_A ....
Probab=25.72 E-value=2.4e+02 Score=20.42 Aligned_cols=68 Identities=19% Similarity=0.373 Sum_probs=33.6
Q ss_pred HHHHHHhhCCCCCceEEeecccccccCCcceeecCCCCCCchHhhcccccEEEEC--CCCCCHHHHHHHHHHHHHhcCCC
Q 028404 123 LYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVD--PPYLSKECLEKVSETVSFLARPG 200 (209)
Q Consensus 123 ly~~Lk~~~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~D--PPFlseec~~K~A~Tik~L~k~~ 200 (209)
||..|+++ -+..---.+ ||.+|+.| -..| ...+..+-+.|++ -|+ -+..+....|+...-
T Consensus 7 vY~dLr~r-----G~~v~~G~k---fG~df~vY-~~~p----~~~Hs~~~V~v~~~~~~~----~~~~l~~~~Rla~~v- 68 (85)
T PF01974_consen 7 VYRDLRSR-----GYVVKPGIK---FGCDFLVY-PGDP----GRYHSSYLVHVLSEDDPI----SWSDLIALVRLATSV- 68 (85)
T ss_dssp HHHHHHHT-----T-EEEEEGG---GTSSEEEE-TSCT----TSSSSSEEEEEEETTSEE----EHHHHHHHHHHHHHT-
T ss_pred HHHHHHHC-----CCEECccCc---CCceEEEE-eCCC----CCcCceEEEEEEcCCCcc----CHHHHHHHHHHHhhc-
Confidence 56677763 222222223 57799999 2233 2233444444433 223 244555555654432
Q ss_pred CCcEEEec
Q 028404 201 DSKLLLLT 208 (209)
Q Consensus 201 ~~kiilcT 208 (209)
.+++|+|+
T Consensus 69 ~K~~ila~ 76 (85)
T PF01974_consen 69 KKELILAY 76 (85)
T ss_dssp TSEEEEEE
T ss_pred CcEEEEEE
Confidence 34677764
No 163
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.54 E-value=53 Score=26.19 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCCCceEEeecccccccCCcceeecCCCCCC-chHhh----cccccEEEEC-CCCCCHH
Q 028404 132 PEVSPKILEYDMRFEQYGSDFAFYDYNQPQD-LPLEL----KHAFSVVVVD-PPYLSKE 184 (209)
Q Consensus 132 ~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~-lp~~l----k~~fD~Vv~D-PPFlsee 184 (209)
.+.+++|+|.|.|..... .. +.-..+.. +...+ ...||+||+| ||.++.+
T Consensus 27 ~g~~vllvD~D~q~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~ 82 (169)
T cd02037 27 LGYKVGLLDADIYGPSIP--KM-WRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE 82 (169)
T ss_pred cCCcEEEEeCCCCCCCch--HH-HhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHH
Confidence 367899999998875321 10 11111111 22222 2579999999 5665543
No 164
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=25.35 E-value=63 Score=28.96 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=27.7
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL 127 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L 127 (209)
--.+.||| ++-++.++.++.++ .+--++|+|.|++|-.+
T Consensus 69 ~e~~~~~~--~e~a~~va~~l~~G---~~VAf~~lGDP~~YsTf 107 (234)
T COG2243 69 REELEDAW--EEAAAEVAAELEAG---RDVAFLTLGDPTFYSTF 107 (234)
T ss_pred HHHHHHHH--HHHHHHHHHHHHcC---CeEEEEEccCccHHHHH
Confidence 34566666 45566688888776 45678899999998843
No 165
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.20 E-value=2.6e+02 Score=28.34 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=39.5
Q ss_pred CCCeEEEEeCc-----hHHHHHHh----hCCCCCceEEeecc-cc------cccCC--cceeecCCCCCCchHhhc--cc
Q 028404 111 SDSRVACIACP-----TLYAYLKK----IRPEVSPKILEYDM-RF------EQYGS--DFAFYDYNQPQDLPLELK--HA 170 (209)
Q Consensus 111 ~~~rIaclstP-----Sly~~Lk~----~~~~~~~~LLE~D~-RF------~~~g~--~FvfYDyn~P~~lp~~lk--~~ 170 (209)
.++.|+++|-. |+...|-. ...+.++.|++.|. |. ..|+. .+.++.-..+..+...++ ..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 46788888755 34443322 12246899999997 42 22332 233443333334443332 35
Q ss_pred ccEEEECCCCCC
Q 028404 171 FSVVVVDPPYLS 182 (209)
Q Consensus 171 fD~Vv~DPPFls 182 (209)
+|+||+|=|=.+
T Consensus 429 ~DLVLIDTaG~s 440 (559)
T PRK12727 429 YKLVLIDTAGMG 440 (559)
T ss_pred CCEEEecCCCcc
Confidence 899999966443
No 166
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=25.05 E-value=1.8e+02 Score=25.23 Aligned_cols=100 Identities=8% Similarity=0.088 Sum_probs=46.1
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCc--hHHHHHHhh--CCCCCceEEeeccc-----ccccCCcceeecCCC--
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACP--TLYAYLKKI--RPEVSPKILEYDMR-----FEQYGSDFAFYDYNQ-- 159 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstP--Sly~~Lk~~--~~~~~~~LLE~D~R-----F~~~g~~FvfYDyn~-- 159 (209)
|+...+...+.+.+.+..+ ...+.++++- .++..++.. .++..+++..+... +...|-+.+++|...
T Consensus 14 ~~~~~~~~~~~~~la~~~~--~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 91 (352)
T cd00616 14 LTLGPKVREFEKAFAEYLG--VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDT 91 (352)
T ss_pred ccCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCc
Confidence 3556666666666666553 2234333322 222233322 23334444433321 111233566666542
Q ss_pred ----CCCchHhhcccccEEEECCCCCCHHHHHHHHHH
Q 028404 160 ----PQDLPLELKHAFSVVVVDPPYLSKECLEKVSET 192 (209)
Q Consensus 160 ----P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~T 192 (209)
+..|.+.+.....+|++-.|++...-++.+.+-
T Consensus 92 ~~~d~~~l~~~i~~~~~~v~~~~~~G~~~~~~~i~~l 128 (352)
T cd00616 92 YNIDPELIEAAITPRTKAIIPVHLYGNPADMDAIMAI 128 (352)
T ss_pred CCcCHHHHHHhcCcCCeEEEEECCCCCcCCHHHHHHH
Confidence 122333344455677767788865434444433
No 167
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=24.95 E-value=3.8e+02 Score=24.34 Aligned_cols=102 Identities=11% Similarity=0.240 Sum_probs=56.4
Q ss_pred ccccCh---HHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHH---hh-CCCCCceEEee---------cccccccCCcc
Q 028404 89 QFWYDA---VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK---KI-RPEVSPKILEY---------DMRFEQYGSDF 152 (209)
Q Consensus 89 QFWYSd---~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk---~~-~~~~~~~LLE~---------D~RF~~~g~~F 152 (209)
.|+|+. .|...|.+.+.++-+ .. .+|.++|-..++. .. .++.++++-+. ..-+..+|-+.
T Consensus 43 ~~~y~r~~~pt~~~le~~la~l~g---~~-~~~~~~sG~~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v 118 (366)
T PRK08247 43 GFDYSRTGNPTRGVLEQAIADLEG---GD-QGFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRF 118 (366)
T ss_pred CccccCCCCchHHHHHHHHHHHhC---CC-cEEEEcCHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceE
Confidence 577764 589999999988853 21 2344554333222 22 34545555431 22222345577
Q ss_pred eeecCCCCCCchHhhcccccEEEECC---CCCCHHHHHHHHHHHH
Q 028404 153 AFYDYNQPQDLPLELKHAFSVVVVDP---PYLSKECLEKVSETVS 194 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DP---PFlseec~~K~A~Tik 194 (209)
.++|...+..+.+.+....++|++.- |.++..=+++++.-++
T Consensus 119 ~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~ 163 (366)
T PRK08247 119 VYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAK 163 (366)
T ss_pred EEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 88888777667666665667777543 4455443444444333
No 168
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=24.69 E-value=53 Score=27.07 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=21.9
Q ss_pred EeCchHHHH-HHhhCCCCCceEEeecccc
Q 028404 118 IACPTLYAY-LKKIRPEVSPKILEYDMRF 145 (209)
Q Consensus 118 lstPSly~~-Lk~~~~~~~~~LLE~D~RF 145 (209)
.|-|+-|.. +++..|+...+|+|||.|=
T Consensus 22 FGLP~~~~~~V~~I~pG~~LFLfn~~~r~ 50 (130)
T PF10539_consen 22 FGLPAGHKDFVKKIKPGMPLFLFNYSDRK 50 (130)
T ss_pred ccCChhhhhHHheeCCCCEEEEEEcCCCE
Confidence 567776664 4555789999999999995
No 169
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.65 E-value=83 Score=30.29 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=29.5
Q ss_pred eeecCCCCCCchHhhc--ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEE
Q 028404 153 AFYDYNQPQDLPLELK--HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLL 205 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk--~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kii 205 (209)
++|.-..-+++..... ..+|.||+|||=-+-+ + .+++.|++-+..|||
T Consensus 343 ~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~---~~lk~l~~~~p~~Iv 392 (432)
T COG2265 343 VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--R---EVLKQLAKLKPKRIV 392 (432)
T ss_pred EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--H---HHHHHHHhcCCCcEE
Confidence 5666555555555442 4699999999988865 2 445555554333554
No 170
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=24.45 E-value=4.1e+02 Score=22.07 Aligned_cols=86 Identities=9% Similarity=0.077 Sum_probs=50.6
Q ss_pred CCCeEEEEeCchHHHH--HHhhC-CCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLYAY--LKKIR-PEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~-~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
++.+|+=|||=|=|.. |.+.. +..+++-+|++.... ..+ . +|+.-|..+. ++. .++||+|+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~--~~~--~~~fD~Ii 147 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG--LEK--HAPFDAII 147 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC--Ccc--CCCccEEE
Confidence 5679999999887764 33322 245799999996543 222 1 3444555432 222 36899999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
++-+.... ...+.-.+++ +++|++.
T Consensus 148 ~~~~~~~~------~~~l~~~L~~-gG~lvi~ 172 (205)
T PRK13944 148 VTAAASTI------PSALVRQLKD-GGVLVIP 172 (205)
T ss_pred EccCcchh------hHHHHHhcCc-CcEEEEE
Confidence 99765322 2233334455 4567664
No 171
>PLN02244 tocopherol O-methyltransferase
Probab=24.39 E-value=5.4e+02 Score=23.38 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcC------CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeecC
Q 028404 98 ETVAQEAVSLCS------DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDY 157 (209)
Q Consensus 98 ~~La~~l~~~a~------~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDy 157 (209)
..+.+++++.+. .++.+|+=|||=+=.. .|.+.. +.+++-+|++..-. ..| + .|+.-|.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc
Confidence 344555555432 1467899999974333 333322 45788888875321 111 1 4666665
Q ss_pred CCCCCchHhhcccccEEEECCCCC-CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPYL-SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFl-seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+. .++ .++||+|++-=-+. -.+ ..++-..+..++|+ +++|+++|
T Consensus 178 ~~~-~~~---~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkp-GG~lvi~~ 223 (340)
T PLN02244 178 LNQ-PFE---DGQFDLVWSMESGEHMPD-KRKFVQELARVAAP-GGRIIIVT 223 (340)
T ss_pred ccC-CCC---CCCccEEEECCchhccCC-HHHHHHHHHHHcCC-CcEEEEEE
Confidence 431 122 36899888621110 011 23455556666777 55777754
No 172
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.73 E-value=1.6e+02 Score=27.56 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=30.4
Q ss_pred HhhcccccEEEECCCCCCHHHH--HHHHHHHHHhcCCCCCcEEEec
Q 028404 165 LELKHAFSVVVVDPPYLSKECL--EKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 165 ~~lk~~fD~Vv~DPPFlseec~--~K~A~Tik~L~k~~~~kiilcT 208 (209)
..+-|..++||.|=||-+-+.. +-+-..|.-|... |.-||++|
T Consensus 143 saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~-GatIifSs 187 (300)
T COG4152 143 SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSS 187 (300)
T ss_pred HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc-CCEEEEec
Confidence 4557889999999999985542 4455556666654 55688876
No 173
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=23.54 E-value=46 Score=32.04 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=48.4
Q ss_pred ccccccChHHHHHHHHHHHhhcCC----CCCeEEEE--eCchHHHHHHhhC--------CCCCceEEeecccccc-----
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSD----SDSRVACI--ACPTLYAYLKKIR--------PEVSPKILEYDMRFEQ----- 147 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~----~~~rIacl--stPSly~~Lk~~~--------~~~~~~LLE~D~RF~~----- 147 (209)
.-||+=...-++.+++.+...... ...+|+=. |+-.+...+.+.. -..+++..|+|..-..
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 458887788888888877543210 12344422 3333333322211 1257788888874321
Q ss_pred ---cC--------CcceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 148 ---YG--------SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 148 ---~g--------~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
++ .+|.-+.+.. .....+.||+||.-|||+.
T Consensus 83 l~~~~~~~~~i~~~d~l~~~~~~----~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 83 LGEFALLEINVINFNSLSYVLLN----IESYLDLFDIVITNPPYGR 124 (524)
T ss_pred HhhcCCCCceeeecccccccccc----cccccCcccEEEeCCCccc
Confidence 22 0122222211 1122357999999999996
No 174
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=23.07 E-value=1.3e+02 Score=24.44 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=9.4
Q ss_pred CCCeEEEEeCchHHH
Q 028404 111 SDSRVACIACPTLYA 125 (209)
Q Consensus 111 ~~~rIaclstPSly~ 125 (209)
++++||++|+|---.
T Consensus 3 ~~~kV~~vG~PCqi~ 17 (161)
T PF04432_consen 3 GGKKVAFVGTPCQIA 17 (161)
T ss_pred CCCEEEEEeccHHHH
Confidence 456777777773333
No 175
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=22.76 E-value=1.3e+02 Score=28.84 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=34.6
Q ss_pred CceEEeecccccccC--Ccc-eeecCC--CCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 135 SPKILEYDMRFEQYG--SDF-AFYDYN--QPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 135 ~~~LLE~D~RF~~~g--~~F-vfYDyn--~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
++.++++..++..++ .++ .+||+. .+..|-+-+.++||.||+|=|+.--+ .|.+.|...
T Consensus 177 d~~~~~~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~~~~~~vV~Dlp~~~~~------~t~~vL~~S 240 (366)
T COG4963 177 DSLLTRLASGLKLLAAPTELAKNYDLKTGAVERLLDLLRGSFDFVVVDLPNIWTD------WTRQVLSGS 240 (366)
T ss_pred HHHHhccCCCceeecCCcchhhhcccccchHHHHHHHhhccCCeEEEcCCCccch------HHHHHHhcC
Confidence 445555555555552 111 245543 23334455688999999999954443 567777765
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=22.57 E-value=1e+02 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=23.4
Q ss_pred Hhhcc-ccc--EEEECCCCCCHHHHHHHHHHHHHhcCC--CCCcEEEe
Q 028404 165 LELKH-AFS--VVVVDPPYLSKECLEKVSETVSFLARP--GDSKLLLL 207 (209)
Q Consensus 165 ~~lk~-~fD--~Vv~DPPFlseec~~K~A~Tik~L~k~--~~~kiilc 207 (209)
..++| +|+ +||+| |||.-..+.++.+... +++|||+|
T Consensus 111 ~~iRGrt~~~~~iIvD------EaQN~t~~~~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 111 AFIRGRTFDNAFIIVD------EAQNLTPEELKMILTRIGEGSKIIIT 152 (205)
T ss_dssp GGGTT--B-SEEEEE-------SGGG--HHHHHHHHTTB-TT-EEEEE
T ss_pred hhhcCccccceEEEEe------cccCCCHHHHHHHHcccCCCcEEEEe
Confidence 34565 464 88887 8898888888888765 47788876
No 177
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.49 E-value=2.1e+02 Score=27.67 Aligned_cols=86 Identities=15% Similarity=0.313 Sum_probs=43.2
Q ss_pred cChHHHHHHHHHHHhhcC------CCCCeEEEEeCc-----hHHH----HHHhhCCCCCceEEeecc-c---c---cccC
Q 028404 92 YDAVTAETVAQEAVSLCS------DSDSRVACIACP-----TLYA----YLKKIRPEVSPKILEYDM-R---F---EQYG 149 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~------~~~~rIaclstP-----Sly~----~Lk~~~~~~~~~LLE~D~-R---F---~~~g 149 (209)
.-.-..+.|++.+..... ...+.|+++|-| |.-. .+++ .+.++.|++.|. | + ..++
T Consensus 74 v~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~--~G~kV~lV~~D~~R~aA~eQLk~~a 151 (429)
T TIGR01425 74 IQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQR--KGFKPCLVCADTFRAGAFDQLKQNA 151 (429)
T ss_pred HHHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEcCcccchhHHHHHHHHh
Confidence 334555556665532110 023567788866 2322 2332 356888888886 2 1 1122
Q ss_pred C----c-ceeecCCCCCCchH----hhc-ccccEEEECCC
Q 028404 150 S----D-FAFYDYNQPQDLPL----ELK-HAFSVVVVDPP 179 (209)
Q Consensus 150 ~----~-FvfYDyn~P~~lp~----~lk-~~fD~Vv~DPP 179 (209)
. . |..++-..|..+-. .++ ..+|+||+|=|
T Consensus 152 ~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTa 191 (429)
T TIGR01425 152 TKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTS 191 (429)
T ss_pred hccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 1 1 22333345533221 222 46999999976
No 178
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.38 E-value=1.9e+02 Score=24.71 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=25.0
Q ss_pred hcccccEEEE---CCCCCCHH-----HHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 167 LKHAFSVVVV---DPPYLSKE-----CLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 167 lk~~fD~Vv~---DPPFlsee-----c~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+..++|+|++ .|. ++.. -.+....-++.|-++ +.|||+|-|
T Consensus 24 ~pds~D~v~lf~~~~~-~~~~~~~~~~~~~~~~~i~~l~~k-G~KVl~sig 72 (255)
T cd06542 24 LPDSVDMVSLFAANIN-LDAATAVQFLLTNKETYIRPLQAK-GTKVLLSIL 72 (255)
T ss_pred CCCcceEEEEcccccC-cccccchhhhhHHHHHHHHHHhhC-CCEEEEEEC
Confidence 4478998886 333 4411 123445567777554 779998854
No 179
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=22.20 E-value=55 Score=27.12 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=21.7
Q ss_pred EeCchHHHH-HHhhCCCCCceEEeecccc
Q 028404 118 IACPTLYAY-LKKIRPEVSPKILEYDMRF 145 (209)
Q Consensus 118 lstPSly~~-Lk~~~~~~~~~LLE~D~RF 145 (209)
.|.|.-|.. +++..|+...+|+|||.|=
T Consensus 24 FGLP~~~~~~V~~IkpG~~LFLfn~~~r~ 52 (132)
T smart00767 24 FGLPRGYRDFVRNIKPGLPLFLYNYDTRK 52 (132)
T ss_pred ccCChhhhhhhheeCCCCEEEEEecCCce
Confidence 567766664 4455789999999999994
No 180
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=22.16 E-value=1.5e+02 Score=27.04 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCCeEEEEeCc---hHHHHHHhhCCCCCceEEeecccc
Q 028404 111 SDSRVACIACP---TLYAYLKKIRPEVSPKILEYDMRF 145 (209)
Q Consensus 111 ~~~rIaclstP---Sly~~Lk~~~~~~~~~LLE~D~RF 145 (209)
..++|+.||-= ++-+.++. .+-.++.+.|+|.+-
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh-~~ve~i~~VEID~~V 112 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKH-LPVERITMVEIDPAV 112 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhc-CCcceEEEEEcCHHH
Confidence 34799999865 55555655 345688999999854
No 181
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=21.22 E-value=1.5e+02 Score=24.28 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=25.1
Q ss_pred cccEEEECCCCCCHHHHHH--H-HHHHHHhcCCCCCcEEEec
Q 028404 170 AFSVVVVDPPYLSKECLEK--V-SETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 170 ~fD~Vv~DPPFlseec~~K--~-A~Tik~L~k~~~~kiilcT 208 (209)
..++||+|-|+.+-+-.+. + ...++.|.+..+..+|++|
T Consensus 78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~T 119 (185)
T smart00534 78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFAT 119 (185)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 5679999999988654332 2 2345666652244677776
No 182
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=21.02 E-value=64 Score=27.72 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHh--hCC-CCCceEEeecccccccCC-cceeecC--------CCC
Q 028404 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK--IRP-EVSPKILEYDMRFEQYGS-DFAFYDY--------NQP 160 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~--~~~-~~~~~LLE~D~RF~~~g~-~FvfYDy--------n~P 160 (209)
+..+...|.-.+... ..++|+=|||=+=|..|.= ..| +.+++-+|.|..+...+. .|-.+.+ ...
T Consensus 30 ~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 556666665444433 5789999999988886542 223 568999999997766532 1222221 112
Q ss_pred CCchHhh-----cccccEEEECCCCCCHHHHHHHHHHHHHhcC
Q 028404 161 QDLPLEL-----KHAFSVVVVDPPYLSKECLEKVSETVSFLAR 198 (209)
Q Consensus 161 ~~lp~~l-----k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k 198 (209)
.++-..| .++||+|++|=.=.. .+.-+-..+++|.+
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~--y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADKRN--YLEYFEKALPLLRP 147 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTGGG--HHHHHHHHHHHEEE
T ss_pred HhhHHHHHhccCCCceeEEEEcccccc--hhhHHHHHhhhccC
Confidence 2222223 247999999975332 22223334454443
No 183
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=21.02 E-value=2.3e+02 Score=24.16 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccccc
Q 028404 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE 146 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~ 146 (209)
+-.|+..+.+.+.+..-.+-.-+++|++|.-...|.+.+|+.+++..-+|.+-.
T Consensus 134 TG~Tl~~ai~~L~~~G~~~I~v~~ll~~~~gl~~l~~~~p~v~i~~~~id~~l~ 187 (207)
T TIGR01091 134 TGGTMIAALDLLKKRGAKKIKVLSIVAAPEGIEAVEKAHPDVDIYTAAIDEKLN 187 (207)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHCCCCEEEEEEECCCcc
Confidence 457778888888776321334456678888888888889999999997777543
No 184
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.93 E-value=1.9e+02 Score=20.26 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=4.5
Q ss_pred cccEEEEC
Q 028404 170 AFSVVVVD 177 (209)
Q Consensus 170 ~fD~Vv~D 177 (209)
.+|+||+|
T Consensus 43 ~~d~iiid 50 (112)
T PF00072_consen 43 PPDLIIID 50 (112)
T ss_dssp TESEEEEE
T ss_pred CceEEEEE
Confidence 35555555
No 185
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=20.79 E-value=5e+02 Score=26.36 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=26.7
Q ss_pred eecCCCCCC-chHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 154 FYDYNQPQD-LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 154 fYDyn~P~~-lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|||=+|+- +|. -|..+-..--.+.+....=..|++.|+.. ...||++|
T Consensus 89 y~d~y~pe~y~P~-----~d~~~~k~~~~~~~i~~~R~~al~~L~~~-~~~ivVas 138 (655)
T TIGR00631 89 YYDYYQPEAYVPS-----KDTYIEKDASINDEIERLRHSATRSLLER-RDVIVVAS 138 (655)
T ss_pred ecccCCccccCCC-----ccccccccCCCChHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 799999975 443 44444444334666544334445555543 22466654
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=20.66 E-value=1.3e+02 Score=26.50 Aligned_cols=13 Identities=15% Similarity=0.641 Sum_probs=9.2
Q ss_pred cccEEEEC----CCCCC
Q 028404 170 AFSVVVVD----PPYLS 182 (209)
Q Consensus 170 ~fD~Vv~D----PPFls 182 (209)
++|++|+| +|+..
T Consensus 167 ~~dlLIiDDlG~~~~~~ 183 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQ 183 (254)
T ss_pred cCCEEEEecccCccCCH
Confidence 48888888 56554
No 187
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.64 E-value=4.2e+02 Score=24.50 Aligned_cols=103 Identities=13% Similarity=0.270 Sum_probs=55.7
Q ss_pred cccccC---hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHh----h-CCCCCceEEeecc----c-----ccccCC
Q 028404 88 SQFWYD---AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK----I-RPEVSPKILEYDM----R-----FEQYGS 150 (209)
Q Consensus 88 SQFWYS---d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~----~-~~~~~~~LLE~D~----R-----F~~~g~ 150 (209)
..|.|+ ..|...|.+.+.++.+ .. .|+.++|-..++.. . .++.++++-+.-- + ...+|-
T Consensus 40 ~~~~Y~r~gnPt~~~lE~~lA~l~g--~~--~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi 115 (377)
T TIGR01324 40 GELTYGRRGTLTHFALQDAMCELEG--GA--GCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV 115 (377)
T ss_pred CCCcccCCCCccHHHHHHHHHHHhC--CC--cEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc
Confidence 357777 4577788888887742 22 34446655554432 2 3455555543221 1 122343
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCC---CCCHHHHHHHHHHHH
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPP---YLSKECLEKVSETVS 194 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP---Flseec~~K~A~Tik 194 (209)
++.++|.+..+.+.+.+.....+|++.-| .+...-++++++-++
T Consensus 116 ~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~ 162 (377)
T TIGR01324 116 DITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAAR 162 (377)
T ss_pred EEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 67777765444455556666778886544 445544555544433
No 188
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=20.29 E-value=1.6e+02 Score=27.49 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=48.4
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH----HHhh-CCCCCceEEeec---------ccccccCCcceeecC
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY----LKKI-RPEVSPKILEYD---------MRFEQYGSDFAFYDY 157 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~----Lk~~-~~~~~~~LLE~D---------~RF~~~g~~FvfYDy 157 (209)
|...|...|.+.+.++.+ ... +|.++|=..+ +... .++.++++.+.- .....+|-+.+++|.
T Consensus 54 ~~~p~~~~le~~lA~l~g--~~~--~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALEG--GVA--ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred CCChhHHHHHHHHHHHhC--CCe--EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 456778888888888753 223 3444433333 3222 345556555421 111224546778887
Q ss_pred CCCCCchHhhcccccEEEECCCC
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPY 180 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPF 180 (209)
+.+..+.+.+.....+|++..|.
T Consensus 130 ~d~~~l~~~l~~~t~~V~le~p~ 152 (418)
T TIGR01326 130 DDPEEFEKAIDENTKAVFAETIG 152 (418)
T ss_pred CCHHHHHHhcCcCCeEEEEECCC
Confidence 66666666666666788888764
No 189
>PF06372 Gemin6: Gemin6 protein; InterPro: IPR009422 This family consists of several mammalian Gemin6 proteins. The exact function of Gemin6 is unknown but it has been found to form part of the Survival of motor neuron complex. The SMN complex plays a key role in the biogenesis of spliceosomal small nuclear ribonucleoproteins (snRNPs) and other ribonucleoprotein particles [].; GO: 0000245 spliceosome assembly, 0005634 nucleus; PDB: 1Y96_A.
Probab=20.28 E-value=34 Score=29.17 Aligned_cols=17 Identities=35% Similarity=0.811 Sum_probs=0.0
Q ss_pred ccEEEECCCCCCHHHHH
Q 028404 171 FSVVVVDPPYLSKECLE 187 (209)
Q Consensus 171 fD~Vv~DPPFlseec~~ 187 (209)
+++|.++|||.-+.|-.
T Consensus 129 ~gvvtI~pPY~~e~C~s 145 (166)
T PF06372_consen 129 AGVVTIEPPYGPENCSS 145 (166)
T ss_dssp -----------------
T ss_pred eeEEEECCCCChHhcCC
Confidence 57999999999999943
Done!