Query 028404
Match_columns 209
No_of_seqs 169 out of 254
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3t_A Protein methyltransfera 97.1 0.0034 1.2E-07 52.5 10.2 150 44-209 46-239 (276)
2 2qm3_A Predicted methyltransfe 97.0 0.0041 1.4E-07 55.0 10.6 117 86-208 147-278 (373)
3 4dzr_A Protein-(glutamine-N5) 96.7 0.0067 2.3E-07 47.1 8.4 87 97-185 14-116 (215)
4 3p9n_A Possible methyltransfer 96.7 0.011 3.7E-07 46.2 9.5 112 92-208 25-153 (189)
5 1dus_A MJ0882; hypothetical pr 96.3 0.012 4E-07 44.8 7.2 109 92-208 32-157 (194)
6 1ej0_A FTSJ; methyltransferase 96.2 0.022 7.6E-07 42.2 7.9 111 95-207 5-135 (180)
7 3evz_A Methyltransferase; NYSG 96.1 0.017 5.9E-07 46.1 7.3 92 111-207 55-178 (230)
8 3q87_B N6 adenine specific DNA 95.9 0.071 2.4E-06 41.4 9.9 104 94-207 7-122 (170)
9 3tma_A Methyltransferase; thum 95.2 0.12 4.1E-06 44.9 9.9 110 95-209 186-318 (354)
10 1ws6_A Methyltransferase; stru 95.2 0.015 5.3E-07 43.6 3.7 106 94-208 25-147 (171)
11 1sqg_A SUN protein, FMU protei 95.1 0.045 1.5E-06 49.3 7.0 88 90-183 228-328 (429)
12 3lpm_A Putative methyltransfer 95.0 0.033 1.1E-06 46.0 5.4 107 96-208 35-176 (259)
13 1wy7_A Hypothetical protein PH 94.9 0.13 4.5E-06 40.2 8.5 92 83-182 21-124 (207)
14 3m6w_A RRNA methylase; rRNA me 94.5 0.019 6.4E-07 53.6 3.0 91 90-183 82-183 (464)
15 3dmg_A Probable ribosomal RNA 94.4 0.11 3.9E-06 46.6 8.0 108 94-208 213-340 (381)
16 3ajd_A Putative methyltransfer 94.3 0.017 5.8E-07 48.7 2.1 112 91-208 65-211 (274)
17 2esr_A Methyltransferase; stru 94.2 0.025 8.6E-07 43.3 2.8 92 111-208 31-138 (177)
18 3mti_A RRNA methylase; SAM-dep 94.1 0.14 4.8E-06 39.3 6.8 105 99-207 10-134 (185)
19 3ofk_A Nodulation protein S; N 94.1 0.091 3.1E-06 41.3 5.8 116 83-208 25-154 (216)
20 2yxl_A PH0851 protein, 450AA l 94.0 0.087 3E-06 47.9 6.4 88 90-183 241-343 (450)
21 4dmg_A Putative uncharacterize 94.0 0.1 3.5E-06 47.2 6.7 111 90-208 197-326 (393)
22 2kw5_A SLR1183 protein; struct 94.0 0.16 5.3E-06 39.5 6.9 116 83-208 4-131 (202)
23 1boo_A Protein (N-4 cytosine-s 93.9 0.032 1.1E-06 48.8 3.1 40 168-208 31-84 (323)
24 2ih2_A Modification methylase 93.8 0.16 5.4E-06 44.4 7.5 94 81-182 12-110 (421)
25 1g60_A Adenine-specific methyl 93.8 0.034 1.2E-06 46.8 3.1 15 169-183 22-36 (260)
26 2gpy_A O-methyltransferase; st 93.7 0.12 4.3E-06 41.4 6.0 107 91-207 37-159 (233)
27 2frx_A Hypothetical protein YE 93.5 0.17 5.9E-06 46.9 7.5 116 89-208 95-246 (479)
28 1ve3_A Hypothetical protein PH 93.5 0.32 1.1E-05 38.1 8.0 105 95-207 23-141 (227)
29 2zig_A TTHA0409, putative modi 93.5 0.044 1.5E-06 47.0 3.2 14 169-182 39-52 (297)
30 2yx1_A Hypothetical protein MJ 93.5 0.11 3.7E-06 45.4 5.7 102 90-207 177-290 (336)
31 2ift_A Putative methylase HI07 93.4 0.05 1.7E-06 43.4 3.3 92 111-208 53-163 (201)
32 3eey_A Putative rRNA methylase 93.4 0.16 5.4E-06 39.4 6.1 93 111-207 22-138 (197)
33 4df3_A Fibrillarin-like rRNA/T 93.3 0.37 1.3E-05 40.9 8.7 105 99-207 61-181 (233)
34 2igt_A SAM dependent methyltra 93.2 0.17 5.9E-06 44.4 6.7 102 99-206 143-270 (332)
35 1nv8_A HEMK protein; class I a 93.0 0.54 1.8E-05 40.0 9.4 80 97-183 108-205 (284)
36 4dcm_A Ribosomal RNA large sub 92.9 0.15 5.1E-06 45.6 5.9 91 111-207 222-333 (375)
37 3ntv_A MW1564 protein; rossman 92.9 0.29 1E-05 39.7 7.2 106 92-206 55-174 (232)
38 2pxx_A Uncharacterized protein 92.6 0.35 1.2E-05 37.3 7.0 103 99-208 31-159 (215)
39 3hm2_A Precorrin-6Y C5,15-meth 92.6 0.51 1.8E-05 35.4 7.7 91 111-208 25-127 (178)
40 3cgg_A SAM-dependent methyltra 92.5 0.44 1.5E-05 35.9 7.2 91 111-208 46-147 (195)
41 1o9g_A RRNA methyltransferase; 92.3 0.14 4.9E-06 41.7 4.6 54 152-206 149-212 (250)
42 2frn_A Hypothetical protein PH 92.2 0.091 3.1E-06 44.4 3.4 106 89-208 106-225 (278)
43 3tr6_A O-methyltransferase; ce 92.2 0.48 1.6E-05 37.4 7.4 107 90-206 46-172 (225)
44 3duw_A OMT, O-methyltransferas 92.1 1.3 4.4E-05 35.0 9.8 105 92-206 42-165 (223)
45 2ozv_A Hypothetical protein AT 92.1 0.058 2E-06 45.0 2.0 95 111-208 36-170 (260)
46 3gu3_A Methyltransferase; alph 92.0 0.22 7.6E-06 41.4 5.5 111 89-207 2-125 (284)
47 2pjd_A Ribosomal RNA small sub 91.9 0.22 7.5E-06 43.2 5.5 102 96-207 184-302 (343)
48 1ixk_A Methyltransferase; open 91.9 0.42 1.4E-05 41.2 7.3 85 90-181 100-198 (315)
49 2avd_A Catechol-O-methyltransf 91.9 0.37 1.3E-05 38.2 6.5 110 87-206 48-177 (229)
50 3v97_A Ribosomal RNA large sub 91.9 0.13 4.3E-06 50.0 4.3 114 87-209 520-658 (703)
51 1ne2_A Hypothetical protein TA 91.8 0.43 1.5E-05 37.2 6.7 93 83-183 23-123 (200)
52 3m4x_A NOL1/NOP2/SUN family pr 91.8 0.15 5.2E-06 47.3 4.6 87 90-182 87-187 (456)
53 1eg2_A Modification methylase 91.7 0.09 3.1E-06 46.2 2.9 15 169-183 57-71 (319)
54 2ipx_A RRNA 2'-O-methyltransfe 91.5 0.3 1E-05 39.2 5.6 93 111-207 77-181 (233)
55 3bzb_A Uncharacterized protein 91.5 1 3.6E-05 37.8 9.1 113 89-206 59-203 (281)
56 3e05_A Precorrin-6Y C5,15-meth 90.7 3.6 0.00012 31.9 11.0 89 111-207 40-141 (204)
57 3grz_A L11 mtase, ribosomal pr 90.6 0.46 1.6E-05 37.1 5.8 102 94-207 44-158 (205)
58 1wxx_A TT1595, hypothetical pr 90.4 0.14 4.8E-06 45.3 2.9 90 112-208 210-325 (382)
59 2yxe_A Protein-L-isoaspartate 90.1 0.36 1.2E-05 37.9 4.7 112 84-209 53-178 (215)
60 3adn_A Spermidine synthase; am 90.1 0.99 3.4E-05 38.9 7.9 93 111-207 83-197 (294)
61 2as0_A Hypothetical protein PH 90.0 0.15 5E-06 45.2 2.6 111 89-208 199-335 (396)
62 3c0k_A UPF0064 protein YCCW; P 90.0 0.14 4.9E-06 45.3 2.6 92 111-208 220-339 (396)
63 2fhp_A Methylase, putative; al 89.7 0.058 2E-06 41.1 -0.2 107 96-208 27-154 (187)
64 2oo3_A Protein involved in cat 89.4 0.23 8E-06 43.9 3.4 94 97-195 80-184 (283)
65 1vbf_A 231AA long hypothetical 89.3 0.43 1.5E-05 37.8 4.7 111 83-209 45-166 (231)
66 1mjf_A Spermidine synthase; sp 89.2 0.39 1.3E-05 40.7 4.6 96 111-208 75-193 (281)
67 2b78_A Hypothetical protein SM 89.1 0.25 8.5E-06 44.0 3.4 113 89-208 194-331 (385)
68 3tfw_A Putative O-methyltransf 88.9 1.1 3.8E-05 36.7 7.0 106 92-207 47-169 (248)
69 3bwc_A Spermidine synthase; SA 88.8 0.42 1.4E-05 41.0 4.5 94 111-208 95-210 (304)
70 3dou_A Ribosomal RNA large sub 88.5 2 6.7E-05 34.2 8.1 110 94-206 7-137 (191)
71 2b2c_A Spermidine synthase; be 88.5 0.78 2.7E-05 40.0 6.1 94 111-208 108-222 (314)
72 3gdh_A Trimethylguanosine synt 88.3 0.077 2.6E-06 42.7 -0.4 82 95-185 64-159 (241)
73 3u81_A Catechol O-methyltransf 88.3 0.98 3.4E-05 36.0 6.2 109 91-207 41-169 (221)
74 1yf3_A DNA adenine methylase; 88.0 0.65 2.2E-05 39.5 5.2 37 170-207 164-210 (259)
75 3mb5_A SAM-dependent methyltra 88.0 0.58 2E-05 37.8 4.7 106 87-207 73-193 (255)
76 3bt7_A TRNA (uracil-5-)-methyl 88.0 2 6.8E-05 37.7 8.4 101 97-207 199-325 (369)
77 2fpo_A Methylase YHHF; structu 88.0 0.22 7.5E-06 39.6 2.1 92 111-208 54-160 (202)
78 1sui_A Caffeoyl-COA O-methyltr 87.7 5.2 0.00018 32.9 10.4 105 92-206 63-188 (247)
79 3pfg_A N-methyltransferase; N, 87.3 2.1 7.2E-05 34.6 7.7 104 95-207 35-150 (263)
80 2yxd_A Probable cobalt-precorr 87.1 2.1 7.1E-05 31.8 7.0 86 111-208 35-131 (183)
81 1fbn_A MJ fibrillarin homologu 87.0 1.8 6.1E-05 34.7 7.0 91 111-206 74-176 (230)
82 2jjq_A Uncharacterized RNA met 87.0 3.8 0.00013 37.1 10.0 105 89-207 269-386 (425)
83 3a27_A TYW2, uncharacterized p 86.6 1 3.5E-05 37.8 5.6 108 86-206 96-217 (272)
84 3r3h_A O-methyltransferase, SA 86.5 3 0.0001 34.3 8.3 107 90-206 42-168 (242)
85 3ldg_A Putative uncharacterize 86.4 0.99 3.4E-05 40.6 5.7 44 134-182 257-312 (384)
86 3lbf_A Protein-L-isoaspartate 86.3 0.63 2.1E-05 36.3 3.9 108 85-208 54-174 (210)
87 2hnk_A SAM-dependent O-methylt 86.2 1.2 4.3E-05 35.8 5.7 112 87-207 39-180 (239)
88 2p35_A Trans-aconitate 2-methy 86.0 0.53 1.8E-05 37.7 3.4 120 83-208 4-132 (259)
89 1iy9_A Spermidine synthase; ro 86.0 0.52 1.8E-05 39.9 3.5 90 111-208 75-189 (275)
90 2pt6_A Spermidine synthase; tr 85.9 0.69 2.4E-05 40.3 4.3 93 111-207 116-229 (321)
91 3k0b_A Predicted N6-adenine-sp 85.4 1.2 4.1E-05 40.1 5.7 45 134-183 264-320 (393)
92 3dr5_A Putative O-methyltransf 85.4 3.5 0.00012 33.5 8.1 106 93-206 38-161 (221)
93 1inl_A Spermidine synthase; be 85.3 0.76 2.6E-05 39.3 4.2 95 111-209 90-206 (296)
94 2i7c_A Spermidine synthase; tr 85.2 0.8 2.7E-05 38.8 4.3 94 111-208 78-192 (283)
95 2nxc_A L11 mtase, ribosomal pr 85.2 2.1 7.3E-05 35.3 6.8 102 95-207 105-217 (254)
96 2plw_A Ribosomal RNA methyltra 85.2 7.6 0.00026 29.7 9.6 112 94-207 4-153 (201)
97 2h00_A Methyltransferase 10 do 85.2 3.2 0.00011 33.5 7.7 88 96-183 47-153 (254)
98 1g8a_A Fibrillarin-like PRE-rR 85.0 2.6 9E-05 33.3 7.0 106 98-207 56-177 (227)
99 2b9e_A NOL1/NOP2/SUN domain fa 84.8 1.1 3.6E-05 39.1 4.9 91 90-183 83-187 (309)
100 3cbg_A O-methyltransferase; cy 84.8 1.2 4.2E-05 36.0 5.0 104 93-206 57-180 (232)
101 1uwv_A 23S rRNA (uracil-5-)-me 84.5 7.2 0.00025 35.0 10.4 87 94-183 268-369 (433)
102 3dtn_A Putative methyltransfer 84.3 2.3 7.8E-05 33.5 6.3 92 111-208 44-148 (234)
103 3e8s_A Putative SAM dependent 84.3 0.34 1.2E-05 37.6 1.4 105 97-208 41-152 (227)
104 3id6_C Fibrillarin-like rRNA/T 84.0 2.3 7.7E-05 35.8 6.5 93 111-207 76-180 (232)
105 1i1n_A Protein-L-isoaspartate 83.9 1.2 4.2E-05 35.1 4.6 111 87-209 54-183 (226)
106 3ldu_A Putative methylase; str 83.8 1.1 3.8E-05 40.1 4.7 45 134-183 258-314 (385)
107 2qfm_A Spermine synthase; sper 83.7 1 3.5E-05 41.0 4.5 37 111-148 188-226 (364)
108 1o54_A SAM-dependent O-methylt 83.3 1.2 4.3E-05 36.7 4.5 87 111-208 112-213 (277)
109 1l3i_A Precorrin-6Y methyltran 82.5 12 0.00042 27.6 9.5 86 111-208 33-134 (192)
110 2dpm_A M.dpnii 1, protein (ade 82.4 1.8 6E-05 37.5 5.3 38 169-207 186-239 (284)
111 1jg1_A PIMT;, protein-L-isoasp 82.2 2.6 8.9E-05 33.8 5.9 107 88-209 71-190 (235)
112 2nyu_A Putative ribosomal RNA 82.1 4.7 0.00016 30.7 7.1 113 94-208 4-145 (196)
113 1uir_A Polyamine aminopropyltr 81.9 2.3 7.7E-05 36.6 5.8 94 111-208 77-195 (314)
114 2g1p_A DNA adenine methylase; 81.8 1.5 5E-05 37.8 4.5 37 170-207 174-226 (278)
115 3gru_A Dimethyladenosine trans 81.6 2 7E-05 37.3 5.4 93 81-182 22-126 (295)
116 3c3y_A Pfomt, O-methyltransfer 81.4 2.3 7.8E-05 34.7 5.4 105 92-206 54-179 (237)
117 3d2l_A SAM-dependent methyltra 81.2 5.2 0.00018 31.4 7.3 99 99-207 22-136 (243)
118 3dp7_A SAM-dependent methyltra 81.1 13 0.00044 32.1 10.4 91 111-207 179-286 (363)
119 1yzh_A TRNA (guanine-N(7)-)-me 80.8 7.1 0.00024 30.6 8.0 94 111-208 41-156 (214)
120 2pwy_A TRNA (adenine-N(1)-)-me 80.6 2 6.7E-05 34.4 4.7 88 111-208 96-198 (258)
121 1jsx_A Glucose-inhibited divis 80.6 12 0.0004 28.8 9.0 138 44-209 15-166 (207)
122 2pbf_A Protein-L-isoaspartate 80.5 2.6 9E-05 33.2 5.3 111 88-208 58-193 (227)
123 1r18_A Protein-L-isoaspartate( 80.5 1.3 4.6E-05 35.2 3.6 110 88-209 62-195 (227)
124 3m70_A Tellurite resistance pr 80.4 1.8 6.2E-05 35.5 4.5 98 98-206 110-221 (286)
125 2p8j_A S-adenosylmethionine-de 80.4 3.4 0.00012 31.7 5.9 109 90-207 4-127 (209)
126 2o07_A Spermidine synthase; st 80.3 1.1 3.7E-05 38.7 3.2 93 111-207 95-208 (304)
127 3g2m_A PCZA361.24; SAM-depende 80.0 6.9 0.00024 32.3 8.0 90 111-208 82-190 (299)
128 1ri5_A MRNA capping enzyme; me 80.0 6.1 0.00021 32.0 7.5 93 111-208 64-174 (298)
129 3dlc_A Putative S-adenosyl-L-m 79.8 2.6 9E-05 32.2 5.0 104 98-207 30-147 (219)
130 3njr_A Precorrin-6Y methylase; 79.7 13 0.00046 29.3 9.3 86 111-208 55-154 (204)
131 1xj5_A Spermidine synthase 1; 79.7 2.7 9.2E-05 36.9 5.6 93 111-207 120-234 (334)
132 2yvl_A TRMI protein, hypotheti 79.4 8.8 0.0003 30.3 8.1 86 111-208 91-190 (248)
133 3ll7_A Putative methyltransfer 79.3 4.1 0.00014 37.3 6.9 97 84-183 60-176 (410)
134 2avn_A Ubiquinone/menaquinone 78.8 3.2 0.00011 33.6 5.4 102 98-208 42-152 (260)
135 2cmg_A Spermidine synthase; tr 78.7 2.9 9.8E-05 35.3 5.3 89 111-208 72-171 (262)
136 3bkx_A SAM-dependent methyltra 78.4 12 0.00041 30.1 8.7 94 111-207 43-158 (275)
137 3jwh_A HEN1; methyltransferase 78.3 14 0.00047 28.7 8.8 108 91-206 12-139 (217)
138 1yb2_A Hypothetical protein TA 78.0 2.7 9.2E-05 34.8 4.8 87 111-208 110-211 (275)
139 3iv6_A Putative Zn-dependent a 77.9 17 0.00058 30.9 9.9 93 111-207 45-147 (261)
140 3tm4_A TRNA (guanine N2-)-meth 77.7 1.4 4.8E-05 38.8 3.2 82 98-183 204-299 (373)
141 1wzn_A SAM-dependent methyltra 77.5 6 0.00021 31.4 6.7 102 97-206 27-143 (252)
142 3v97_A Ribosomal RNA large sub 77.5 3.1 0.0001 40.3 5.7 47 134-183 257-316 (703)
143 2bm8_A Cephalosporin hydroxyla 77.3 27 0.00094 28.3 11.3 106 94-207 67-186 (236)
144 3ocj_A Putative exported prote 77.0 4.4 0.00015 33.8 5.9 92 111-208 118-227 (305)
145 3lcc_A Putative methyl chlorid 76.8 2.6 8.9E-05 33.4 4.3 110 91-207 47-170 (235)
146 3orh_A Guanidinoacetate N-meth 76.8 3.1 0.00011 33.8 4.8 93 111-208 60-170 (236)
147 3fpf_A Mtnas, putative unchara 76.7 15 0.00052 32.2 9.5 112 86-208 97-222 (298)
148 3jwg_A HEN1, methyltransferase 76.2 17 0.00057 28.2 8.8 105 94-207 15-139 (219)
149 3sm3_A SAM-dependent methyltra 76.2 2.3 7.9E-05 33.0 3.7 90 111-207 30-140 (235)
150 3e23_A Uncharacterized protein 75.6 4 0.00014 31.6 5.0 90 111-208 43-141 (211)
151 2h1r_A Dimethyladenosine trans 75.6 3.7 0.00013 35.0 5.1 87 86-183 19-119 (299)
152 3hnr_A Probable methyltransfer 75.2 7.1 0.00024 30.2 6.3 100 98-208 35-145 (220)
153 3ujc_A Phosphoethanolamine N-m 75.1 9.8 0.00034 30.1 7.3 102 101-208 44-159 (266)
154 2zfu_A Nucleomethylin, cerebra 74.5 12 0.0004 29.0 7.5 98 95-207 53-150 (215)
155 2f8l_A Hypothetical protein LM 73.6 9.3 0.00032 32.8 7.2 92 85-182 103-213 (344)
156 3gjy_A Spermidine synthase; AP 73.3 3.9 0.00013 36.2 4.9 90 114-207 92-199 (317)
157 4htf_A S-adenosylmethionine-de 72.3 4.2 0.00014 33.2 4.5 102 100-208 58-173 (285)
158 3c3p_A Methyltransferase; NP_9 72.1 5.2 0.00018 31.2 4.9 104 92-206 40-158 (210)
159 3l8d_A Methyltransferase; stru 71.8 2.9 0.0001 32.9 3.4 104 97-208 40-153 (242)
160 1dl5_A Protein-L-isoaspartate 71.7 5.6 0.00019 33.7 5.3 87 111-208 75-175 (317)
161 3bus_A REBM, methyltransferase 71.6 8.7 0.0003 30.8 6.2 106 97-208 46-166 (273)
162 3k6r_A Putative transferase PH 70.7 4.9 0.00017 34.7 4.8 102 85-197 101-216 (278)
163 3cc8_A Putative methyltransfer 70.5 4.7 0.00016 31.0 4.2 92 111-208 32-130 (230)
164 2r3s_A Uncharacterized protein 70.3 12 0.0004 31.2 6.9 89 111-207 165-270 (335)
165 3ccf_A Cyclopropane-fatty-acyl 70.2 1.3 4.5E-05 36.3 1.0 90 111-208 57-154 (279)
166 1m6y_A S-adenosyl-methyltransf 70.0 7 0.00024 33.9 5.7 70 111-183 26-111 (301)
167 3bxo_A N,N-dimethyltransferase 69.4 37 0.0013 26.2 9.4 103 96-207 26-140 (239)
168 1kpg_A CFA synthase;, cyclopro 68.9 23 0.0008 28.6 8.4 101 99-208 51-168 (287)
169 4fzv_A Putative methyltransfer 68.9 7.9 0.00027 34.7 5.9 98 78-182 117-235 (359)
170 2gs9_A Hypothetical protein TT 67.9 12 0.00041 28.8 6.1 97 103-208 29-132 (211)
171 1xdz_A Methyltransferase GIDB; 67.8 16 0.00055 29.2 7.0 91 111-209 70-175 (240)
172 3hem_A Cyclopropane-fatty-acyl 67.7 25 0.00086 28.9 8.4 89 111-208 72-183 (302)
173 3ou2_A SAM-dependent methyltra 67.3 11 0.00037 28.8 5.7 102 97-208 34-146 (218)
174 2oyr_A UPF0341 protein YHIQ; a 65.4 2.4 8.4E-05 36.2 1.7 15 169-183 163-177 (258)
175 1zx0_A Guanidinoacetate N-meth 65.3 8.1 0.00028 30.7 4.8 92 111-207 60-169 (236)
176 2ip2_A Probable phenazine-spec 65.2 59 0.002 27.0 11.5 86 113-207 169-271 (334)
177 2i62_A Nicotinamide N-methyltr 64.5 1.7 5.8E-05 34.7 0.5 96 111-208 56-198 (265)
178 2xyq_A Putative 2'-O-methyl tr 64.2 16 0.00056 31.5 6.8 86 111-206 63-169 (290)
179 3b3j_A Histone-arginine methyl 63.8 14 0.00048 34.0 6.6 103 98-208 144-263 (480)
180 3ftd_A Dimethyladenosine trans 63.7 16 0.00056 30.4 6.5 92 84-182 6-107 (249)
181 3f4k_A Putative methyltransfer 63.6 9 0.00031 30.4 4.7 91 111-208 46-150 (257)
182 1y8c_A S-adenosylmethionine-de 63.0 7.1 0.00024 30.4 3.9 103 96-207 23-141 (246)
183 3gwz_A MMCR; methyltransferase 62.9 73 0.0025 27.3 11.1 99 101-207 191-306 (369)
184 3kkz_A Uncharacterized protein 62.7 19 0.00066 28.9 6.6 91 111-208 46-150 (267)
185 3dh0_A SAM dependent methyltra 62.5 7.8 0.00027 30.0 4.1 92 111-207 37-142 (219)
186 1i9g_A Hypothetical protein RV 62.2 8 0.00027 31.4 4.2 88 111-208 99-203 (280)
187 2fk8_A Methoxy mycolic acid sy 61.9 17 0.00058 30.1 6.3 102 98-208 76-194 (318)
188 2b25_A Hypothetical protein; s 61.7 17 0.00059 30.7 6.4 89 111-208 105-219 (336)
189 1pjz_A Thiopurine S-methyltran 61.6 28 0.00096 27.2 7.3 111 91-207 2-139 (203)
190 1x19_A CRTF-related protein; m 61.5 55 0.0019 27.8 9.6 89 111-207 190-294 (359)
191 2dul_A N(2),N(2)-dimethylguano 61.2 5.6 0.00019 35.5 3.4 94 86-184 22-145 (378)
192 3ege_A Putative methyltransfer 61.1 29 0.001 27.9 7.5 92 111-208 34-130 (261)
193 3q7e_A Protein arginine N-meth 61.1 9.5 0.00032 33.0 4.7 90 111-206 66-171 (349)
194 3axs_A Probable N(2),N(2)-dime 60.8 4.5 0.00016 36.6 2.7 93 88-182 24-136 (392)
195 2p7i_A Hypothetical protein; p 60.7 17 0.00059 28.0 5.8 102 97-208 30-141 (250)
196 2xvm_A Tellurite resistance pr 60.5 2.8 9.6E-05 31.8 1.1 89 111-207 32-135 (199)
197 2okc_A Type I restriction enzy 60.1 17 0.00057 32.6 6.3 92 84-183 147-266 (445)
198 1qzz_A RDMB, aclacinomycin-10- 59.1 23 0.00079 30.0 6.8 88 111-207 182-286 (374)
199 3s1s_A Restriction endonucleas 58.3 17 0.00057 36.9 6.5 96 84-182 291-411 (878)
200 3llv_A Exopolyphosphatase-rela 57.8 44 0.0015 24.1 7.4 88 112-206 6-101 (141)
201 1zq9_A Probable dimethyladenos 57.7 7.7 0.00026 32.7 3.5 88 84-182 3-105 (285)
202 1yub_A Ermam, rRNA methyltrans 57.6 7.9 0.00027 31.5 3.4 89 85-182 5-105 (245)
203 3tqs_A Ribosomal RNA small sub 57.6 12 0.00043 31.4 4.8 90 85-181 5-107 (255)
204 3bgv_A MRNA CAP guanine-N7 met 57.2 17 0.00059 30.2 5.5 114 91-208 15-155 (313)
205 1nt2_A Fibrillarin-like PRE-rR 57.0 28 0.00095 27.7 6.6 93 111-207 57-160 (210)
206 1u2z_A Histone-lysine N-methyl 56.3 70 0.0024 29.2 9.9 94 111-207 242-358 (433)
207 2qe6_A Uncharacterized protein 56.0 50 0.0017 27.4 8.3 96 111-208 77-196 (274)
208 3uwp_A Histone-lysine N-methyl 55.4 86 0.0029 29.2 10.4 113 91-207 153-287 (438)
209 3r0q_C Probable protein argini 55.1 20 0.00069 31.3 5.9 102 98-207 49-168 (376)
210 3g5t_A Trans-aconitate 3-methy 54.9 27 0.00094 28.6 6.4 104 100-206 25-147 (299)
211 2r6z_A UPF0341 protein in RSP 54.8 5 0.00017 33.8 1.8 68 111-183 83-174 (258)
212 3lst_A CALO1 methyltransferase 54.8 83 0.0028 26.6 9.6 88 111-207 184-285 (348)
213 1tw3_A COMT, carminomycin 4-O- 53.8 40 0.0014 28.5 7.3 89 111-207 183-287 (360)
214 3i53_A O-methyltransferase; CO 53.1 57 0.002 27.2 8.2 89 111-207 169-273 (332)
215 1g6q_1 HnRNP arginine N-methyl 52.9 42 0.0014 28.6 7.4 89 111-205 38-142 (328)
216 3o4f_A Spermidine synthase; am 52.7 15 0.00053 32.1 4.7 46 99-145 72-119 (294)
217 3ggd_A SAM-dependent methyltra 52.0 53 0.0018 25.7 7.4 93 111-207 56-162 (245)
218 3g07_A 7SK snRNA methylphospha 51.6 21 0.00073 29.6 5.2 34 111-144 46-81 (292)
219 2yqz_A Hypothetical protein TT 51.5 23 0.00079 27.9 5.2 108 92-207 18-140 (263)
220 3mcz_A O-methyltransferase; ad 49.3 53 0.0018 27.6 7.4 91 112-207 180-286 (352)
221 2ar0_A M.ecoki, type I restric 49.2 6.6 0.00022 36.7 1.8 95 85-183 146-274 (541)
222 2y1w_A Histone-arginine methyl 48.3 24 0.00081 30.4 5.1 90 111-208 50-155 (348)
223 3mgg_A Methyltransferase; NYSG 48.3 18 0.00061 29.1 4.1 105 98-207 23-141 (276)
224 1vl5_A Unknown conserved prote 48.1 16 0.00053 29.3 3.7 109 88-207 17-139 (260)
225 3m33_A Uncharacterized protein 46.5 26 0.00088 27.6 4.7 80 94-178 32-119 (226)
226 2fyt_A Protein arginine N-meth 46.2 86 0.0029 26.9 8.4 89 111-205 64-168 (340)
227 3nx3_A Acoat, acetylornithine 45.8 1.3E+02 0.0045 25.1 9.8 90 91-182 74-191 (395)
228 3ufb_A Type I restriction-modi 45.7 8.9 0.0003 35.8 2.1 15 169-183 301-315 (530)
229 3p9c_A Caffeic acid O-methyltr 44.7 1E+02 0.0035 26.5 8.7 87 111-207 201-297 (364)
230 1fp1_D Isoliquiritigenin 2'-O- 44.0 1.2E+02 0.0042 25.8 9.0 97 101-207 197-305 (372)
231 3i16_A Aluminum resistance pro 43.8 82 0.0028 28.2 8.1 106 87-195 65-208 (427)
232 3thr_A Glycine N-methyltransfe 43.2 33 0.0011 27.7 5.0 103 98-207 47-174 (293)
233 3g89_A Ribosomal RNA small sub 43.0 16 0.00056 30.0 3.1 91 111-209 80-185 (249)
234 1xxl_A YCGJ protein; structura 42.3 34 0.0012 27.0 4.9 89 111-207 21-123 (239)
235 3jzl_A Putative cystathionine 42.1 70 0.0024 28.4 7.3 107 87-195 51-191 (409)
236 3lkd_A Type I restriction-modi 41.9 11 0.00037 35.5 2.1 98 84-182 193-309 (542)
237 1p91_A Ribosomal RNA large sub 40.3 33 0.0011 27.5 4.5 102 95-208 69-178 (269)
238 3khk_A Type I restriction-modi 38.7 12 0.0004 35.2 1.8 14 169-182 328-341 (544)
239 3reo_A (ISO)eugenol O-methyltr 38.5 1.9E+02 0.0064 24.8 11.0 98 101-207 191-299 (368)
240 3kjh_A CO dehydrogenase/acetyl 38.3 14 0.00047 28.9 1.8 18 166-183 126-145 (254)
241 2o57_A Putative sarcosine dime 38.2 43 0.0015 27.2 5.0 91 111-208 82-187 (297)
242 3dli_A Methyltransferase; PSI- 37.9 23 0.00079 27.9 3.2 92 111-208 41-140 (240)
243 2fca_A TRNA (guanine-N(7)-)-me 37.6 1.1E+02 0.0037 24.0 7.2 94 111-208 38-153 (213)
244 3fut_A Dimethyladenosine trans 37.5 34 0.0011 29.1 4.3 93 81-182 19-122 (271)
245 2ex4_A Adrenal gland protein A 37.1 16 0.00055 28.9 2.1 92 111-208 79-185 (241)
246 3h2b_A SAM-dependent methyltra 36.0 30 0.001 26.2 3.5 90 112-208 42-141 (203)
247 3i42_A Response regulator rece 35.9 37 0.0013 23.3 3.6 40 169-209 46-85 (127)
248 3sso_A Methyltransferase; macr 35.8 2.1E+02 0.0073 26.4 9.7 115 84-206 194-322 (419)
249 1s3l_A Hypothetical protein MJ 35.8 46 0.0016 26.2 4.6 53 152-209 7-60 (190)
250 4dad_A Putative pilus assembly 34.3 64 0.0022 22.6 4.8 38 169-209 66-103 (146)
251 2qxy_A Response regulator; reg 34.0 62 0.0021 22.5 4.7 37 169-209 47-83 (142)
252 3nhm_A Response regulator; pro 33.9 52 0.0018 22.6 4.2 41 168-209 45-85 (133)
253 4fsd_A Arsenic methyltransfera 33.9 41 0.0014 29.2 4.4 93 111-207 83-202 (383)
254 3heb_A Response regulator rece 33.4 49 0.0017 23.5 4.1 40 169-209 58-97 (152)
255 3hvy_A Cystathionine beta-lyas 33.0 1.3E+02 0.0043 27.0 7.6 106 87-195 66-208 (427)
256 1fp2_A Isoflavone O-methyltran 32.9 2E+02 0.0068 24.2 8.5 88 111-207 188-287 (352)
257 3eod_A Protein HNR; response r 32.6 46 0.0016 22.8 3.7 38 169-209 50-87 (130)
258 1nkv_A Hypothetical protein YJ 32.0 31 0.0011 27.2 3.0 90 111-208 36-140 (256)
259 3kht_A Response regulator; PSI 31.9 46 0.0016 23.3 3.7 40 169-209 50-89 (144)
260 1cr0_A DNA primase/helicase; R 31.4 19 0.00066 29.7 1.8 40 168-207 145-193 (296)
261 3ht4_A Aluminum resistance pro 31.4 65 0.0022 28.6 5.4 106 87-195 57-197 (431)
262 3ndn_A O-succinylhomoserine su 31.3 78 0.0027 27.7 5.8 87 92-180 78-176 (414)
263 3gpi_A NAD-dependent epimerase 31.3 1.9E+02 0.0066 23.0 7.8 64 113-176 4-69 (286)
264 3igf_A ALL4481 protein; two-do 31.2 20 0.00068 32.1 1.9 43 97-143 19-69 (374)
265 3grc_A Sensor protein, kinase; 30.0 47 0.0016 23.1 3.5 41 168-209 48-88 (140)
266 2a14_A Indolethylamine N-methy 30.0 35 0.0012 27.7 3.1 108 97-208 38-197 (263)
267 3jte_A Response regulator rece 29.5 57 0.0019 22.8 3.8 38 169-209 48-85 (143)
268 3ckk_A TRNA (guanine-N(7)-)-me 29.3 84 0.0029 25.4 5.3 95 111-208 46-168 (235)
269 3bkw_A MLL3908 protein, S-aden 28.7 1.3E+02 0.0043 23.2 6.1 92 111-208 43-144 (243)
270 3lua_A Response regulator rece 28.6 83 0.0028 21.9 4.6 40 169-209 49-89 (140)
271 3gt7_A Sensor protein; structu 28.2 67 0.0023 23.1 4.1 40 169-209 50-89 (154)
272 3b2n_A Uncharacterized protein 28.1 63 0.0022 22.4 3.8 10 169-178 48-57 (133)
273 4eyb_A Beta-lactamase NDM-1; m 27.4 64 0.0022 26.4 4.3 38 169-208 82-119 (270)
274 4e7p_A Response regulator; DNA 27.2 68 0.0023 22.8 3.9 38 169-209 65-102 (150)
275 3io3_A DEHA2D07832P; chaperone 27.1 29 0.001 30.5 2.2 30 97-128 35-67 (348)
276 3n53_A Response regulator rece 27.1 43 0.0015 23.4 2.8 40 169-209 45-84 (140)
277 3k9g_A PF-32 protein; ssgcid, 27.0 39 0.0013 27.2 2.9 17 167-183 141-158 (267)
278 3i9f_A Putative type 11 methyl 26.8 23 0.00077 26.2 1.3 87 111-207 17-111 (170)
279 2w0m_A SSO2452; RECA, SSPF, un 26.7 27 0.00094 26.7 1.8 40 169-208 120-165 (235)
280 3mm4_A Histidine kinase homolo 26.2 69 0.0023 24.7 4.1 38 170-209 119-159 (206)
281 1qam_A ERMC' methyltransferase 26.2 47 0.0016 27.1 3.2 88 86-182 7-106 (244)
282 2r25_B Osmosensing histidine p 26.1 92 0.0031 21.7 4.4 8 170-177 52-59 (133)
283 3hdg_A Uncharacterized protein 25.8 69 0.0024 22.1 3.7 38 169-209 50-87 (137)
284 3vc1_A Geranyl diphosphate 2-C 25.8 52 0.0018 27.2 3.5 91 111-208 117-221 (312)
285 2d1p_A TUSD, hypothetical UPF0 25.2 54 0.0018 25.3 3.2 30 170-199 14-43 (140)
286 1dbw_A Transcriptional regulat 24.9 87 0.003 21.3 4.1 10 169-178 46-55 (126)
287 2rjn_A Response regulator rece 24.3 75 0.0026 22.6 3.7 38 169-209 50-87 (154)
288 3f6c_A Positive transcription 24.2 66 0.0022 22.1 3.3 38 169-209 45-82 (134)
289 3cz5_A Two-component response 23.8 94 0.0032 22.0 4.2 38 169-209 50-87 (153)
290 3lte_A Response regulator; str 23.7 78 0.0027 21.6 3.6 14 169-182 49-62 (132)
291 3hv2_A Response regulator/HD d 23.3 82 0.0028 22.4 3.8 38 169-209 57-94 (153)
292 3nmy_A Xometc, cystathionine g 23.2 68 0.0023 28.0 3.9 86 93-180 65-162 (400)
293 3end_A Light-independent proto 23.2 32 0.0011 28.4 1.7 16 167-182 153-169 (307)
294 3dxy_A TRNA (guanine-N(7)-)-me 23.2 33 0.0011 27.5 1.7 95 111-208 34-150 (218)
295 2zay_A Response regulator rece 22.7 73 0.0025 22.3 3.3 40 169-209 51-90 (147)
296 1lss_A TRK system potassium up 22.7 2E+02 0.0067 19.9 7.2 89 112-207 4-101 (140)
297 3q9l_A Septum site-determining 22.6 53 0.0018 25.9 2.8 18 166-183 108-127 (260)
298 3kto_A Response regulator rece 22.5 71 0.0024 22.2 3.2 38 169-209 49-88 (136)
299 2j48_A Two-component sensor ki 22.4 89 0.003 20.3 3.6 10 170-179 45-54 (119)
300 3eqz_A Response regulator; str 22.3 1.1E+02 0.0038 20.7 4.2 36 171-209 47-82 (135)
301 2xj4_A MIPZ; replication, cell 22.0 49 0.0017 27.3 2.6 17 167-183 100-117 (286)
302 3hzh_A Chemotaxis response reg 22.0 98 0.0033 22.2 4.0 37 170-209 83-119 (157)
303 3kcn_A Adenylate cyclase homol 21.9 86 0.0029 22.2 3.6 36 171-209 49-84 (151)
304 3fwz_A Inner membrane protein 21.8 2.3E+02 0.0078 20.5 6.1 89 112-206 7-103 (140)
305 1xtp_A LMAJ004091AAA; SGPP, st 21.7 56 0.0019 25.5 2.8 92 111-208 93-197 (254)
306 3ug7_A Arsenical pump-driving 21.7 98 0.0033 26.7 4.5 12 168-179 149-161 (349)
307 3cu5_A Two component transcrip 21.5 1E+02 0.0035 21.7 4.0 38 169-209 48-85 (141)
308 3ea0_A ATPase, para family; al 21.5 26 0.0009 27.5 0.8 17 167-183 115-132 (245)
309 3f6p_A Transcriptional regulat 21.0 1.1E+02 0.0036 20.8 3.9 11 169-179 45-55 (120)
310 2k5k_A Uncharacterized protein 20.8 64 0.0022 23.1 2.6 19 39-57 6-24 (70)
311 1z63_A Helicase of the SNF2/RA 20.6 85 0.0029 27.6 4.0 38 169-209 148-185 (500)
312 3eul_A Possible nitrate/nitrit 20.4 82 0.0028 22.3 3.2 39 168-209 59-97 (152)
313 3cnb_A DNA-binding response re 20.2 1E+02 0.0034 21.2 3.6 12 169-180 53-64 (143)
314 1qkk_A DCTD, C4-dicarboxylate 20.0 1.1E+02 0.0036 21.8 3.8 38 169-209 46-83 (155)
No 1
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=97.10 E-value=0.0034 Score=52.50 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhh-HhhhcccCCCCcccccCccccccc-----ccccChHHHHHHHHHHHhhcCCCCCeEEE
Q 028404 44 MLSSQALAALQEFLSEQNQTS-ETAQNKTESDSDEVALVSEDWRLS-----QFWYDAVTAETVAQEAVSLCSDSDSRVAC 117 (209)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~-~~f~~~~~~~~~~~~~~~EDwqlS-----QFWYSd~Ta~~La~~l~~~a~~~~~rIac 117 (209)
.|+.+..+.|+++..++..+. -++- ....+-|.+. ..+......+.|++.+++....++.+|+=
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~p~~~i----------~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~~~~~vLD 115 (276)
T 2b3t_A 46 QLTDEQCQQLDALLTRRRDGEPIAHL----------TGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILD 115 (276)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCCHHHH----------SCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCChhHe----------eeeeEECCceEEeCCCCcccCchHHHHHHHHHHhcccCCCEEEE
Confidence 588889999999887765442 1111 1111223221 11122234566677776654225679999
Q ss_pred EeCchHH--HHHHhhCCCCCceEEeeccccc--------ccC-C--cceeecCCCCCCchHhhcccccEEEECCCCCCH-
Q 028404 118 IACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK- 183 (209)
Q Consensus 118 lstPSly--~~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse- 183 (209)
|||=|=. ..+.+..|..+++.+|++..-- .+| + +|+.-|...+ ++ .++||+||++|||...
T Consensus 116 lG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~--~~---~~~fD~Iv~npPy~~~~ 190 (276)
T 2b3t_A 116 LGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LA---GQQFAMIVSNPPYIDEQ 190 (276)
T ss_dssp ETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GT---TCCEEEEEECCCCBCTT
T ss_pred ecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh--cc---cCCccEEEECCCCCCcc
Confidence 9887533 3444445777899999986432 222 1 3555555443 22 4689999999999764
Q ss_pred ------------------------HHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 184 ------------------------ECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 184 ------------------------ec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+.++...+..++++ ++.+++.+|
T Consensus 191 ~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 239 (276)
T 2b3t_A 191 DPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLLEHG 239 (276)
T ss_dssp CHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEEECC
T ss_pred ccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 2345555556666666 556776543
No 2
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=97.04 E-value=0.0041 Score=55.03 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=67.6
Q ss_pred cccccccC-hHHHHHHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccc--------ccC--C-c
Q 028404 86 RLSQFWYD-AVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFE--------QYG--S-D 151 (209)
Q Consensus 86 qlSQFWYS-d~Ta~~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~--------~~g--~-~ 151 (209)
...|.|.+ ..++..++........ ++.+|+-|| =+ +-..+....+..+++.+|+|.+-- ..| . +
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~ 224 (373)
T 2qm3_A 147 EFDQAYVTPETTVARVILMHTRGDL-ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIE 224 (373)
T ss_dssp GGTCCCBCHHHHHHHHHHHHHTTCS-TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEE
T ss_pred hcCCeecCHHHHHHHHHHHhhcCCC-CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEE
Confidence 35664444 3344444433222111 467898887 53 333444445557899999986432 222 1 5
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE-EEec
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL-LLLT 208 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~ki-ilcT 208 (209)
|+.-|..++ +|..+.++||+||+||||.... ..++-..+..++++ ++++ ++++
T Consensus 225 ~~~~D~~~~--l~~~~~~~fD~Vi~~~p~~~~~-~~~~l~~~~~~Lkp-gG~~~~~~~ 278 (373)
T 2qm3_A 225 IFTFDLRKP--LPDYALHKFDTFITDPPETLEA-IRAFVGRGIATLKG-PRCAGYFGI 278 (373)
T ss_dssp EECCCTTSC--CCTTTSSCBSEEEECCCSSHHH-HHHHHHHHHHTBCS-TTCEEEEEE
T ss_pred EEEChhhhh--chhhccCCccEEEECCCCchHH-HHHHHHHHHHHccc-CCeEEEEEE
Confidence 667777664 4544557899999999998765 34554555556666 3444 5543
No 3
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.73 E-value=0.0067 Score=47.07 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcC--CCCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccccCC----------cceeecCCCCCC
Q 028404 97 AETVAQEAVSLCS--DSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYGS----------DFAFYDYNQPQD 162 (209)
Q Consensus 97 a~~La~~l~~~a~--~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~g~----------~FvfYDyn~P~~ 162 (209)
.+.+++.+++... .++.+|+=|||=+=. ..+.+..++.+++.+|++........ +|+.-|..+|
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-- 91 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW-- 91 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHH--
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh--
Confidence 3455555555432 267899999887433 34445456678999999986654421 2222233221
Q ss_pred chH--hhcccccEEEECCCCCCHHH
Q 028404 163 LPL--ELKHAFSVVVVDPPYLSKEC 185 (209)
Q Consensus 163 lp~--~lk~~fD~Vv~DPPFlseec 185 (209)
++. ...++||+|++||||.....
T Consensus 92 ~~~~~~~~~~fD~i~~npp~~~~~~ 116 (215)
T 4dzr_A 92 LIERAERGRPWHAIVSNPPYIPTGE 116 (215)
T ss_dssp HHHHHHTTCCBSEEEECCCCCC---
T ss_pred hhhhhhccCcccEEEECCCCCCCcc
Confidence 221 12378999999999976543
No 4
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.71 E-value=0.011 Score=46.21 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=68.8
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCCCCCceEEeeccccccc--------C-C--cceeecCC
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQY--------G-S--DFAFYDYN 158 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn 158 (209)
-++...+.+.+.+......++.+|+=|||=+=...+ .. .+..+++-+|++...... + + +|+.-|..
T Consensus 25 ~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~ 103 (189)
T 3p9n_A 25 TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVA 103 (189)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHH
T ss_pred CcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHH
Confidence 345555666666655322267899999998654433 22 244579999999744322 2 1 34444443
Q ss_pred CCCCchHhh-cccccEEEECCCCCCH-HHHHHHHHHHHH--hcCCCCCcEEEec
Q 028404 159 QPQDLPLEL-KHAFSVVVVDPPYLSK-ECLEKVSETVSF--LARPGDSKLLLLT 208 (209)
Q Consensus 159 ~P~~lp~~l-k~~fD~Vv~DPPFlse-ec~~K~A~Tik~--L~k~~~~kiilcT 208 (209)
+ ++..+ .++||+|++||||... +-+.++-..+.. ++++ ++.|++.+
T Consensus 104 ~---~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~p-gG~l~~~~ 153 (189)
T 3p9n_A 104 A---VVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTRE-GTVAVVER 153 (189)
T ss_dssp H---HHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCT-TCEEEEEE
T ss_pred H---HHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCC-CeEEEEEe
Confidence 2 23333 5789999999999982 335666666666 7777 55777754
No 5
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=96.30 E-value=0.012 Score=44.78 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=64.7
Q ss_pred cChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC-----Ccceee
Q 028404 92 YDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-----SDFAFY 155 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-----~~FvfY 155 (209)
|+..+....++.+++... .++.+|+=|||=+=.. .+.+. ..+++.+|++.... ..+ -+|+.-
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (194)
T 1dus_A 32 FSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS 109 (194)
T ss_dssp TTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC
T ss_pred CCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 344433333334443332 1567999999875433 33332 56899999986432 222 134444
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCC-HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLS-KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFls-eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|..++ ++ .++||+|+++|||.. .+-+..+-..+..++++ ++++++.+
T Consensus 110 d~~~~--~~---~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~ 157 (194)
T 1dus_A 110 DLYEN--VK---DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKD-NGEIWVVI 157 (194)
T ss_dssp STTTT--CT---TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred chhcc--cc---cCCceEEEECCCcccchhHHHHHHHHHHHHcCC-CCEEEEEE
Confidence 55443 22 467999999999986 45556666667777776 45677654
No 6
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=96.18 E-value=0.022 Score=42.16 Aligned_cols=111 Identities=12% Similarity=-0.016 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhc-CCCCCeEEEEeCchHH--HHHHhh-CCCCCceEEeecccccccCC-cceeecCCCCC---CchHh
Q 028404 95 VTAETVAQEAVSLC-SDSDSRVACIACPTLY--AYLKKI-RPEVSPKILEYDMRFEQYGS-DFAFYDYNQPQ---DLPLE 166 (209)
Q Consensus 95 ~Ta~~La~~l~~~a-~~~~~rIaclstPSly--~~Lk~~-~~~~~~~LLE~D~RF~~~g~-~FvfYDyn~P~---~lp~~ 166 (209)
+....|.+.+.... ..++.+|+=|||=+=. ..+.+. .++.+++.+|++. ...... +|+.-|..... .++..
T Consensus 5 r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhcc
Confidence 34444555444432 1257799999886432 334443 3567899999998 544432 56666665431 12222
Q ss_pred hc-ccccEEEECCCCCCHHH-----------HHHHHHHHHHhcCCCCCcEEEe
Q 028404 167 LK-HAFSVVVVDPPYLSKEC-----------LEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 167 lk-~~fD~Vv~DPPFlseec-----------~~K~A~Tik~L~k~~~~kiilc 207 (209)
+. ++||+|++++|+-...- +.++-..+..++++ ++.+++.
T Consensus 84 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~ 135 (180)
T 1ej0_A 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP-GGSFVVK 135 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 43 68999999999753110 13444555556666 4566654
No 7
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=96.05 E-value=0.017 Score=46.07 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=57.5
Q ss_pred CCCeEEEEeCc-hHHHH--HHhhCCCCCceEEeecccccc--------cC--CcceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACP-TLYAY--LKKIRPEVSPKILEYDMRFEQ--------YG--SDFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstP-Sly~~--Lk~~~~~~~~~LLE~D~RF~~--------~g--~~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||= +=... +.+.. ..+++.+|++...-. .| -+|+.-|......++ .++||+|+++
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~I~~n 130 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVV---EGTFDVIFSA 130 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTC---CSCEEEEEEC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcc---cCceeEEEEC
Confidence 67899999998 54443 33322 568999999975432 22 145665654333343 3789999999
Q ss_pred CCCCCH-------------------HHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPYLSK-------------------ECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPFlse-------------------ec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|||... +...++...+..++++ ++++++.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 178 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP-GGKVALY 178 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEE-EEEEEEE
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC-CeEEEEE
Confidence 999642 2235556666667776 5567664
No 8
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.87 E-value=0.071 Score=41.42 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccccCC--cceeecCCCCCCchHhhcccc
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGS--DFAFYDYNQPQDLPLELKHAF 171 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~g~--~FvfYDyn~P~~lp~~lk~~f 171 (209)
....+.|++.+..... ++.+|+=|||=+=+..+.-.... +++-+|++...-.... +|+.=|..+|. +. ++|
T Consensus 7 ~~~~~~l~~~l~~~~~-~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~~~~~~~~~~d~~~~~--~~---~~f 79 (170)
T 3q87_B 7 GEDTYTLMDALEREGL-EMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALESHRGGNLVRADLLCSI--NQ---ESV 79 (170)
T ss_dssp CHHHHHHHHHHHHHTC-CSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHTCSSSCEEECSTTTTB--CG---GGC
T ss_pred CccHHHHHHHHHhhcC-CCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhcccCCeEEECChhhhc--cc---CCC
Confidence 3445566666544212 56799999998655543321122 8999999987654422 67777777653 32 789
Q ss_pred cEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 172 SVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 172 D~Vv~DPPFls----------eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|+|+++|||.. .+-..-+.+.++.| + ++++++.
T Consensus 80 D~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p-gG~l~~~ 122 (170)
T 3q87_B 80 DVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV--T-VGMLYLL 122 (170)
T ss_dssp SEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC--C-SSEEEEE
T ss_pred CEEEECCCCccCCccccccCCcchHHHHHHHHhhC--C-CCEEEEE
Confidence 99999999983 11223445556666 4 4566664
No 9
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=95.19 E-value=0.12 Score=44.87 Aligned_cols=110 Identities=17% Similarity=0.055 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhC-CCCCceEEeecccccc--------cC--C-cceeecCCC
Q 028404 95 VTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIR-PEVSPKILEYDMRFEQ--------YG--S-DFAFYDYNQ 159 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~-~~~~~~LLE~D~RF~~--------~g--~-~FvfYDyn~ 159 (209)
.....|+..++..+. .++.+|+=++|=|=.. .+.... +..+++-+|+|.+.-. .| . +|..-|..+
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH 265 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh
Confidence 344567777776654 2467888777764333 233333 5678999999975432 22 1 455556543
Q ss_pred CCCchHhhcccccEEEECCCCCCHHH--------HHHHHHHHHHhcCCCCCcEEEecC
Q 028404 160 PQDLPLELKHAFSVVVVDPPYLSKEC--------LEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPFlseec--------~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
++.. ...||+||+||||+.+-- ...+...++.++++ ++++++.|+
T Consensus 266 ---~~~~-~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp-gG~l~i~t~ 318 (354)
T 3tma_A 266 ---LPRF-FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP-GGRVALLTL 318 (354)
T ss_dssp ---GGGT-CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT-TCEEEEEES
T ss_pred ---Cccc-cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC-CcEEEEEeC
Confidence 2221 235899999999985321 24566667777777 567777764
No 10
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=95.18 E-value=0.015 Score=43.62 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C-C-cceeecCCCCC
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G-S-DFAFYDYNQPQ 161 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g-~-~FvfYDyn~P~ 161 (209)
+...+.+.+.+..... ++.+|+=+||=+=.. .+.+..+ +++.+|++...... + . +|+.-|..+.
T Consensus 25 ~~~~~~~~~~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~- 100 (171)
T 1ws6_A 25 VRLRKALFDYLRLRYP-RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF- 100 (171)
T ss_dssp HHHHHHHHHHHHHHCT-TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH-
T ss_pred HHHHHHHHHHHHhhcc-CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHH-
Confidence 3444445555543221 467899999885443 3333333 49999998754322 1 1 2333333221
Q ss_pred CchHhhc---ccccEEEECCCCCCHHHHHHHHHHHH--HhcCCCCCcEEEec
Q 028404 162 DLPLELK---HAFSVVVVDPPYLSKECLEKVSETVS--FLARPGDSKLLLLT 208 (209)
Q Consensus 162 ~lp~~lk---~~fD~Vv~DPPFlseec~~K~A~Tik--~L~k~~~~kiilcT 208 (209)
++ .+. ++||+|++||||. .....+.+.+. .++++ ++.+++++
T Consensus 101 -~~-~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~-gG~~~~~~ 147 (171)
T 1ws6_A 101 -LP-EAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEA-GGLYVLQH 147 (171)
T ss_dssp -HH-HHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEE-EEEEEEEE
T ss_pred -HH-hhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCC-CcEEEEEe
Confidence 11 222 2799999999996 22344444444 55666 45677765
No 11
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=95.07 E-value=0.045 Score=49.28 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=54.6
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--CcceeecC
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--SDFAFYDY 157 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~~FvfYDy 157 (209)
|+--+..+..++..+. . . ++.+|+=+||=+=.. .|.+..++.+++-+|++.... .+| -+++.-|.
T Consensus 228 ~~~qd~~s~~~~~~l~-~-~-~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~ 304 (429)
T 1sqg_A 228 VTVQDASAQGCMTWLA-P-Q-NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG 304 (429)
T ss_dssp EEECCHHHHTHHHHHC-C-C-TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT
T ss_pred eEeeCHHHHHHHHHcC-C-C-CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch
Confidence 4445666666666553 3 2 577998888763333 344444556899999987432 222 14555565
Q ss_pred CCCCCchHhhc-ccccEEEECCCCCCH
Q 028404 158 NQPQDLPLELK-HAFSVVVVDPPYLSK 183 (209)
Q Consensus 158 n~P~~lp~~lk-~~fD~Vv~DPPFlse 183 (209)
.. ++..+. ++||+|++|||+.+.
T Consensus 305 ~~---~~~~~~~~~fD~Vl~D~Pcsg~ 328 (429)
T 1sqg_A 305 RY---PSQWCGEQQFDRILLDAPCSAT 328 (429)
T ss_dssp TC---THHHHTTCCEEEEEEECCCCCG
T ss_pred hh---chhhcccCCCCEEEEeCCCCcc
Confidence 43 344444 579999999999763
No 12
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=94.96 E-value=0.033 Score=46.00 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCCCCCceEEeecccccc--------cC--C--cceeecCCCCC
Q 028404 96 TAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQ 161 (209)
Q Consensus 96 Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~ 161 (209)
|-..|......... ++.+|+=|||=+=...+ .+..+ .+++.+|++..... .+ + .|+.-|..+
T Consensus 35 ~d~~ll~~~~~~~~-~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~-- 110 (259)
T 3lpm_A 35 IDAVLLAKFSYLPI-RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKK-- 110 (259)
T ss_dssp HHHHHHHHHCCCCS-SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGG--
T ss_pred HHHHHHHHHhcCCC-CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHH--
Confidence 33444444444310 36799999888655543 33333 38999999974322 11 1 344445433
Q ss_pred CchHhh-cccccEEEECCCCCCH--------------------HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 162 DLPLEL-KHAFSVVVVDPPYLSK--------------------ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 162 ~lp~~l-k~~fD~Vv~DPPFlse--------------------ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++..+ .++||+||++|||... .-++.+...+..++++ +++++++.
T Consensus 111 -~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 176 (259)
T 3lpm_A 111 -ITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ-GGKANFVH 176 (259)
T ss_dssp -GGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred -hhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC-CcEEEEEE
Confidence 23333 4789999999999755 2234566667777777 45666653
No 13
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=94.91 E-value=0.13 Score=40.20 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=59.5
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC-C-
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG-S- 150 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g-~- 150 (209)
..+.+.||.-+...+..++..+......++.+|+=+||=+=.. .+.+. ...+++.+|++..... .| .
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 99 (207)
T 1wy7_A 21 PKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKF 99 (207)
T ss_dssp CCGGGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSE
T ss_pred cccceeeecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCE
Confidence 4677888887888888888777654222567999999874433 33332 2236999999964432 22 1
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+|+.-|..+ + .++||+||+||||..
T Consensus 100 ~~~~~d~~~---~----~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 100 KVFIGDVSE---F----NSRVDIVIMNPPFGS 124 (207)
T ss_dssp EEEESCGGG---C----CCCCSEEEECCCCSS
T ss_pred EEEECchHH---c----CCCCCEEEEcCCCcc
Confidence 344444332 2 248999999999975
No 14
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=94.47 E-value=0.019 Score=53.59 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=51.1
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCC-CCCceEEeeccccc--------ccCCcceeecCC
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRP-EVSPKILEYDMRFE--------QYGSDFAFYDYN 158 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~-~~~~~LLE~D~RF~--------~~g~~FvfYDyn 158 (209)
+||-.+-+..++-.++... ++.+|+=+||=+=.. .|....+ ...++-+|++..-. .+|-. +.+--.
T Consensus 82 ~~~vQd~ss~l~a~~L~~~--~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~ 158 (464)
T 3m6w_A 82 LYYIQEPSAQAVGVLLDPK--PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQA 158 (464)
T ss_dssp SEEECCTTTHHHHHHHCCC--TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECS
T ss_pred eEEEECHHHHHHHHhcCcC--CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEEC
Confidence 4444444444444444442 578999888864333 2333322 35788899987332 22312 222112
Q ss_pred CCCCchHhhcccccEEEECCCCCCH
Q 028404 159 QPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 159 ~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
....++..+.++||+||+|||+.+.
T Consensus 159 Da~~l~~~~~~~FD~Il~D~PcSg~ 183 (464)
T 3m6w_A 159 PPRALAEAFGTYFHRVLLDAPCSGE 183 (464)
T ss_dssp CHHHHHHHHCSCEEEEEEECCCCCG
T ss_pred CHHHhhhhccccCCEEEECCCcCCc
Confidence 2333555567889999999999543
No 15
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=94.45 E-value=0.11 Score=46.56 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhhcC---CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--CcceeecCC
Q 028404 94 AVTAETVAQEAVSLCS---DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--SDFAFYDYN 158 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~---~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~~FvfYDyn 158 (209)
+.+.+.|++.+.+... .++.+|+=|||=+=+. .+.+. +.+++.+|++.+.- ..+ -+|+.-|..
T Consensus 213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~ 290 (381)
T 3dmg_A 213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD 290 (381)
T ss_dssp CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTT
T ss_pred CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchh
Confidence 4667778887766431 1467999999985333 33332 45899999987532 222 257777765
Q ss_pred CCCCchHhhcccccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 159 QPQDLPLELKHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 159 ~P~~lp~~lk~~fD~Vv~DPPFls-----eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+... . .++||+||++|||-. .+-...+...+..++++ +++|++.+
T Consensus 291 ~~~~--~--~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp-GG~l~iv~ 340 (381)
T 3dmg_A 291 EALT--E--EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP-GGVFFLVS 340 (381)
T ss_dssp TTSC--T--TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred hccc--c--CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc-CcEEEEEE
Confidence 5321 1 368999999999986 44455666666667776 45666643
No 16
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=94.28 E-value=0.017 Score=48.72 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=62.4
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCC-CCceEEeeccccc--------ccC-C--cceeec
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPE-VSPKILEYDMRFE--------QYG-S--DFAFYD 156 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~-~~~~LLE~D~RF~--------~~g-~--~FvfYD 156 (209)
||-.+-+..++-.++... ++.+|+=+||=+=... |.+..++ .+++-+|++..-. .+| . +++.-|
T Consensus 65 ~~~qd~~s~l~~~~l~~~--~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D 142 (274)
T 3ajd_A 65 YMPQSISSMIPPIVLNPR--EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINAD 142 (274)
T ss_dssp EEECCSGGGHHHHHHCCC--TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred EEEeCHHHHHHHHHhCCC--CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 344444444444444442 5778998887643332 4443343 6899999987532 222 1 344444
Q ss_pred CCCCCCchHhh---cccccEEEECCCCCCHHH------------------HHHHHHHHHHhcCCCCCcEEEec
Q 028404 157 YNQPQDLPLEL---KHAFSVVVVDPPYLSKEC------------------LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 157 yn~P~~lp~~l---k~~fD~Vv~DPPFlseec------------------~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.. .++..+ .++||+|++|||+.+... +.++-..+..++|+ +++|+.+|
T Consensus 143 ~~---~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~st 211 (274)
T 3ajd_A 143 MR---KYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK-DGELVYST 211 (274)
T ss_dssp HH---HHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred hH---hcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEE
Confidence 32 233332 468999999999976322 24445555556666 56788865
No 17
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=94.21 E-value=0.025 Score=43.27 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=51.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .+.+. +..+++.+|++..... .+ + +|+.=|..+ +...+.++||+|++
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~fD~i~~ 106 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER---AIDCLTGRFDLVFL 106 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH---HHHHBCSCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH---hHHhhcCCCCEEEE
Confidence 567999999985443 23332 4468999999874322 22 1 222222221 11223467999999
Q ss_pred CCCCCCHHHHHHHHHHHH--HhcCCCCCcEEEec
Q 028404 177 DPPYLSKECLEKVSETVS--FLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik--~L~k~~~~kiilcT 208 (209)
||||.. .....+-..+. .++++ ++.+++++
T Consensus 107 ~~~~~~-~~~~~~~~~l~~~~~L~~-gG~l~~~~ 138 (177)
T 2esr_A 107 DPPYAK-ETIVATIEALAAKNLLSE-QVMVVCET 138 (177)
T ss_dssp CCSSHH-HHHHHHHHHHHHTTCEEE-EEEEEEEE
T ss_pred CCCCCc-chHHHHHHHHHhCCCcCC-CcEEEEEE
Confidence 999943 22344434443 34454 45676654
No 18
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=94.07 E-value=0.14 Score=39.29 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCchHhh
Q 028404 99 TVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDLPLEL 167 (209)
Q Consensus 99 ~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~lp~~l 167 (209)
.++..++...-.++.+|+=|||=+=+..+.-.....+++-+|++...-. .| + +|+. + .-..++...
T Consensus 10 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~--~~~~l~~~~ 86 (185)
T 3mti_A 10 HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-D--GHENLDHYV 86 (185)
T ss_dssp HHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-S--CGGGGGGTC
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-C--cHHHHHhhc
Confidence 3444444433226789999999865553321112568999999874322 22 2 3333 2 122333344
Q ss_pred cccccEEEECCCCCCH---------HHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 168 KHAFSVVVVDPPYLSK---------ECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 168 k~~fD~Vv~DPPFlse---------ec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.++||+|++++||+.. +.....-..+..++++ +++++++
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 134 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV-GGRLAIM 134 (185)
T ss_dssp CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 5789999999988754 3333444555556666 4566554
No 19
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=94.05 E-value=0.091 Score=41.29 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=73.6
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccCC-c
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYGS-D 151 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g~-~ 151 (209)
.-|...+-||..+....+...+.... ++.+|+=|||=+=.. .|.+. ..+++.+|++...- ..+. +
T Consensus 25 ~~w~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 100 (216)
T 3ofk_A 25 DPWRLDDNPFERERHTQLLRLSLSSG--AVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWSHIS 100 (216)
T ss_dssp SGGGTTTCHHHHHHHHHHHHHHTTTS--SEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCSSEE
T ss_pred CCcccccCHhHHHHHHHHHHHHcccC--CCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCCCeE
Confidence 56888899998866666655554432 567999999986444 34332 24789999986432 2222 4
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCC---CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYL---SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl---seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|+.-|..+.. ..++||+|++-..+- ..+-+.++-..+..++++ ++.++++|
T Consensus 101 ~~~~d~~~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 154 (216)
T 3ofk_A 101 WAATDILQFS-----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAP-GGHLVFGS 154 (216)
T ss_dssp EEECCTTTCC-----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred EEEcchhhCC-----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCC-CCEEEEEe
Confidence 6666665432 247899999875542 234445666666677777 55777754
No 20
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=94.05 E-value=0.087 Score=47.87 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=50.8
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCC-CCceEEeecccc--------cccCC---cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPE-VSPKILEYDMRF--------EQYGS---DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~-~~~~LLE~D~RF--------~~~g~---~FvfY 155 (209)
||--+..+..++.. +... ++.+|+=+||=+=.. .|....++ .+++-+|++..- ..+|- +++.-
T Consensus 241 ~~~qd~~s~l~~~~-l~~~--~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~ 317 (450)
T 2yxl_A 241 IIVQEEASAVASIV-LDPK--PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVK 317 (450)
T ss_dssp EEECCHHHHHHHHH-HCCC--TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEecCchhHHHHHh-cCCC--CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 34445555444444 4432 577899888764333 33333343 578999998642 22231 34455
Q ss_pred cCCCCCCchHhhc-ccccEEEECCCCCCH
Q 028404 156 DYNQPQDLPLELK-HAFSVVVVDPPYLSK 183 (209)
Q Consensus 156 Dyn~P~~lp~~lk-~~fD~Vv~DPPFlse 183 (209)
|... ++..+. ++||+|++|||+.+.
T Consensus 318 D~~~---~~~~~~~~~fD~Vl~D~Pcsg~ 343 (450)
T 2yxl_A 318 DARK---APEIIGEEVADKVLLDAPCTSS 343 (450)
T ss_dssp CTTC---CSSSSCSSCEEEEEEECCCCCG
T ss_pred Chhh---cchhhccCCCCEEEEcCCCCCC
Confidence 5543 233344 679999999999654
No 21
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=93.97 E-value=0.1 Score=47.19 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=60.7
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccccccc--------C--CcceeecCCC
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY--------G--SDFAFYDYNQ 159 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~--------g--~~FvfYDyn~ 159 (209)
||++..-.+.++.. .+. ++.+|+=++|=+=...+.-...+.+++-+|++..--.. | ..|..-|..+
T Consensus 197 ~f~dqr~~r~~l~~---~~~-~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~ 272 (393)
T 4dmg_A 197 YYLDQRENRRLFEA---MVR-PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALP 272 (393)
T ss_dssp SCGGGHHHHHHHHT---TCC-TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHH
T ss_pred cCCCHHHHHHHHHH---Hhc-CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHH
Confidence 66666555444333 332 47899999998655544322123348999998754322 2 1343223211
Q ss_pred CCCchHhhcccccEEEECCCCCCH---------HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 160 PQDLPLELKHAFSVVVVDPPYLSK---------ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPFlse---------ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+...+.+.||+||+|||+... .-+.++...+..++++ ++.|++||
T Consensus 273 ---~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~Lkp-GG~Lv~~s 326 (393)
T 4dmg_A 273 ---TLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAE-EGFLWLSS 326 (393)
T ss_dssp ---HHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ---HHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 122235569999999998652 1123333334445565 45676554
No 22
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=93.96 E-value=0.16 Score=39.50 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=72.4
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccCC--
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYGS-- 150 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g~-- 150 (209)
+-|+..++||+......|.+.+.... ++ +|+=|||=+=.. .|.+. +.+++.+|++.... ..+.
T Consensus 4 ~~y~~~~~~~~~~~~~~l~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 78 (202)
T 2kw5_A 4 ERFSQSEYVYGTEPNDFLVSVANQIP--QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKI 78 (202)
T ss_dssp CCCCCCCCCCCCCCCSSHHHHHHHSC--SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhcccchhhccCchHHHHHHHHhCC--CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCce
Confidence 34555678888877777777665553 44 999999875333 33332 45889999986432 2221
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.|+.-|.... .++ .++||+|++-......+-..++-..+..++++ ++.|++.+
T Consensus 79 ~~~~~d~~~~-~~~---~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 131 (202)
T 2kw5_A 79 TTVQSNLADF-DIV---ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKP-GGVFILEG 131 (202)
T ss_dssp EEECCBTTTB-SCC---TTTCSEEEEECCCCCHHHHHHHHHHHHTTCCS-SEEEEEEE
T ss_pred EEEEcChhhc-CCC---cCCccEEEEEhhcCCHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 3444455432 111 36899999866666655566777777777887 56777654
No 23
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=93.91 E-value=0.032 Score=48.77 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=24.9
Q ss_pred cccccEEEECCCCCCHH--------------HHHHHHHHHHHhcCCCCCcEEEec
Q 028404 168 KHAFSVVVVDPPYLSKE--------------CLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 168 k~~fD~Vv~DPPFlsee--------------c~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+++|+|++||||.... -+......++.++++ ++.|++..
T Consensus 31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~-~G~i~i~~ 84 (323)
T 1boo_A 31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKP-DGSFVVDF 84 (323)
T ss_dssp SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcC-CcEEEEEE
Confidence 36899999999997641 123344444556665 34566543
No 24
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=93.85 E-value=0.16 Score=44.36 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=53.1
Q ss_pred CcccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhC-CCCCceEEeecccccccCC--cceee
Q 028404 81 VSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIR-PEVSPKILEYDMRFEQYGS--DFAFY 155 (209)
Q Consensus 81 ~~EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~-~~~~~~LLE~D~RF~~~g~--~FvfY 155 (209)
..+.....||+-...-++.+++.+.. . ...+|+=+||=|=.. .+.+.. +..+++-+|+|..-..... +++.-
T Consensus 12 ~~~~~~~g~~~TP~~l~~~~~~~~~~--~-~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~ 88 (421)
T 2ih2_A 12 NSAPRSLGRVETPPEVVDFMVSLAEA--P-RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILA 88 (421)
T ss_dssp ---------CCCCHHHHHHHHHHCCC--C-TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEES
T ss_pred hhhcccCceEeCCHHHHHHHHHhhcc--C-CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeC
Confidence 34556677888777766666665532 1 456899888875333 333322 4568999999986654321 34444
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCC
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
|+.... ..++||+||+.|||..
T Consensus 89 D~~~~~-----~~~~fD~Ii~NPPy~~ 110 (421)
T 2ih2_A 89 DFLLWE-----PGEAFDLILGNPPYGI 110 (421)
T ss_dssp CGGGCC-----CSSCEEEEEECCCCCC
T ss_pred ChhhcC-----ccCCCCEEEECcCccC
Confidence 433221 1357999999999975
No 25
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=93.82 E-value=0.034 Score=46.77 Aligned_cols=15 Identities=33% Similarity=0.735 Sum_probs=13.1
Q ss_pred ccccEEEECCCCCCH
Q 028404 169 HAFSVVVVDPPYLSK 183 (209)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (209)
+++|+|++||||...
T Consensus 22 ~~vdlI~~DPPY~~~ 36 (260)
T 1g60_A 22 KSVQLAVIDPPYNLS 36 (260)
T ss_dssp TCEEEEEECCCCSSC
T ss_pred cccCEEEECCCCCCC
Confidence 589999999999754
No 26
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=93.65 E-value=0.12 Score=41.41 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=64.4
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeec
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYD 156 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYD 156 (209)
.....+...|...+... ++.+|+=|||=+=+. .|.+..|..+++.+|++.... ..| . +|+.-|
T Consensus 37 ~~~~~~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 113 (233)
T 2gpy_A 37 IMDLLGMESLLHLLKMA---APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD 113 (233)
T ss_dssp CCCHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC
T ss_pred CcCHHHHHHHHHHHhcc---CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 45666666666665443 568999999975444 344445667899999986442 222 1 233333
Q ss_pred CCCCCCchHhh--cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 157 YNQPQDLPLEL--KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 157 yn~P~~lp~~l--k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
... .+| .+ .++||+|++|+|.... ..+-..+..++++ ++.|++.
T Consensus 114 ~~~--~~~-~~~~~~~fD~I~~~~~~~~~---~~~l~~~~~~L~p-gG~lv~~ 159 (233)
T 2gpy_A 114 ALQ--LGE-KLELYPLFDVLFIDAAKGQY---RRFFDMYSPMVRP-GGLILSD 159 (233)
T ss_dssp GGG--SHH-HHTTSCCEEEEEEEGGGSCH---HHHHHHHGGGEEE-EEEEEEE
T ss_pred HHH--HHH-hcccCCCccEEEECCCHHHH---HHHHHHHHHHcCC-CeEEEEE
Confidence 322 123 33 4789999999996532 3444455556666 4567765
No 27
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=93.53 E-value=0.17 Score=46.92 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=65.5
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhC-CCCCceEEeeccccc--------ccC-C--ccee
Q 028404 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIR-PEVSPKILEYDMRFE--------QYG-S--DFAF 154 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~-~~~~~~LLE~D~RF~--------~~g-~--~Fvf 154 (209)
-.+|-.+-+..++-.++.....++.+|+=+||=+=... |.... +...++-+|++..-. .+| . .++.
T Consensus 95 G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~ 174 (479)
T 2frx_A 95 GLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTH 174 (479)
T ss_dssp TSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred cEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 34454444455554444432114679998888644332 33322 345789999987432 223 1 3445
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEec
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.|.. .++..+.++||+|++|||+.+... +.++-..+..++|+ +++|+.+|
T Consensus 175 ~D~~---~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~LvysT 246 (479)
T 2frx_A 175 FDGR---VFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP-GGTLVYST 246 (479)
T ss_dssp CCST---THHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCHH---HhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEec
Confidence 5543 345445678999999999864321 22333444455666 56888876
No 28
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=93.47 E-value=0.32 Score=38.10 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccc--------ccCC--cceeecCCCCCC
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYGS--DFAFYDYNQPQD 162 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~--------~~g~--~FvfYDyn~P~~ 162 (209)
+..+.+.+.+.+... ++.+|+=|||=+=. ..+.+..+ +++.+|++.... ..+. +|+.-|..+. .
T Consensus 23 ~~~~~~~~~l~~~~~-~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~ 98 (227)
T 1ve3_A 23 SRIETLEPLLMKYMK-KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-S 98 (227)
T ss_dssp HHHHHHHHHHHHSCC-SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-C
T ss_pred HHHHHHHHHHHHhcC-CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC-C
Confidence 456777787877765 57899999987533 33444333 899999986432 2222 5666676542 1
Q ss_pred chHhhcccccEEEECCC--CCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 163 LPLELKHAFSVVVVDPP--YLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DPP--Flseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
++ .++||+|++.+| +....-..++-..++.++++ ++++++.
T Consensus 99 ~~---~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~ 141 (227)
T 1ve3_A 99 FE---DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP-SGKFIMY 141 (227)
T ss_dssp SC---TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CC---CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 22 358999999999 77754445666666777776 4567665
No 29
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.46 E-value=0.044 Score=46.97 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=12.5
Q ss_pred ccccEEEECCCCCC
Q 028404 169 HAFSVVVVDPPYLS 182 (209)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (209)
++||+||+||||..
T Consensus 39 ~s~DlIvtdPPY~~ 52 (297)
T 2zig_A 39 ASVHLVVTSPPYWT 52 (297)
T ss_dssp TCEEEEEECCCCCC
T ss_pred CceeEEEECCCCCC
Confidence 68999999999974
No 30
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=93.45 E-value=0.11 Score=45.38 Aligned_cols=102 Identities=6% Similarity=0.008 Sum_probs=59.2
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccc--------cC--C--cceeecC
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDY 157 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDy 157 (209)
||+...-.+++ .+..... ++.+|+=++|=+=...+. .....+++-+|++..--. .| + +|+.-|.
T Consensus 177 ~~~~~~~~er~--~i~~~~~-~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~ 252 (336)
T 2yx1_A 177 YFSPRLGGERA--RIMKKVS-LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252 (336)
T ss_dssp CCCGGGHHHHH--HHHHHCC-TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred ccCCccHHHHH--HHHHhcC-CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh
Confidence 45444444444 2334433 578999998887666666 444568999999863321 11 1 2333343
Q ss_pred CCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+. + ++||+||+|||+...+.+ ....+. +++ ++.|+++
T Consensus 253 ~~~------~-~~fD~Vi~dpP~~~~~~l---~~~~~~-L~~-gG~l~~~ 290 (336)
T 2yx1_A 253 REV------D-VKGNRVIMNLPKFAHKFI---DKALDI-VEE-GGVIHYY 290 (336)
T ss_dssp GGC------C-CCEEEEEECCTTTGGGGH---HHHHHH-EEE-EEEEEEE
T ss_pred HHh------c-CCCcEEEECCcHhHHHHH---HHHHHH-cCC-CCEEEEE
Confidence 322 1 689999999998876433 333444 444 3456654
No 31
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=93.44 E-value=0.05 Score=43.44 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=50.7
Q ss_pred CCCeEEEEeCchHHHHHH--hhCCCCCceEEeecccccc--------cC---C--cceeecCCCCCCchHhh-ccc-ccE
Q 028404 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQ--------YG---S--DFAFYDYNQPQDLPLEL-KHA-FSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk--~~~~~~~~~LLE~D~RF~~--------~g---~--~FvfYDyn~P~~lp~~l-k~~-fD~ 173 (209)
++.+|+=+||=+=...+. .. ...+++-+|++..... .| + +|+.-|..+ ++..+ .++ ||+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~~~fD~ 128 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD---FLKQPQNQPHFDV 128 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH---HTTSCCSSCCEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHH---HHHhhccCCCCCE
Confidence 467999998876544332 22 2247999999964322 12 1 233333221 11111 357 999
Q ss_pred EEECCCCCCHHHHHHHHHHH--HHhcCCCCCcEEEec
Q 028404 174 VVVDPPYLSKECLEKVSETV--SFLARPGDSKLLLLT 208 (209)
Q Consensus 174 Vv~DPPFlseec~~K~A~Ti--k~L~k~~~~kiilcT 208 (209)
|++||||.... ..++-..+ ..++++ ++.|++++
T Consensus 129 I~~~~~~~~~~-~~~~l~~~~~~~~Lkp-gG~l~i~~ 163 (201)
T 2ift_A 129 VFLDPPFHFNL-AEQAISLLCENNWLKP-NALIYVET 163 (201)
T ss_dssp EEECCCSSSCH-HHHHHHHHHHTTCEEE-EEEEEEEE
T ss_pred EEECCCCCCcc-HHHHHHHHHhcCccCC-CcEEEEEE
Confidence 99999987433 34443333 223565 45676654
No 32
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=93.40 E-value=0.16 Score=39.41 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=55.7
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
++.+|+=|||=+=.. .+.+. .+..+++.+|++.... ..| + +|+.-|.. .++..+.++||+|+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ---NMDKYIDCPVKAVM 98 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGG---GGGGTCCSCEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH---HHhhhccCCceEEE
Confidence 578999999885443 23332 3556899999986432 211 1 34444542 24444557899999
Q ss_pred ECCCCCC---------HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 176 VDPPYLS---------KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 176 ~DPPFls---------eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
++|||+. .+...++-..+..++++ +++++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~l~~~ 138 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVT-GGIITVV 138 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcC-CCEEEEE
Confidence 9999943 22333445555556666 4566654
No 33
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=93.29 E-value=0.37 Score=40.91 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHHHHHHhhcC----CCCCeEEEEeCchHHHH--HHhh-CCCCCceEEeecccccc--------cCC-cceeecCCCCCC
Q 028404 99 TVAQEAVSLCS----DSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFEQ--------YGS-DFAFYDYNQPQD 162 (209)
Q Consensus 99 ~La~~l~~~a~----~~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~RF~~--------~g~-~FvfYDyn~P~~ 162 (209)
.||..++.+.+ .++.+|+-|||=+=+.. |-+. .|+.+++-+|+..+.-. .+. .++..|-+.|..
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~ 140 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK 140 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc
Confidence 46666655432 37899999999975543 3333 57789999999987643 222 577888888865
Q ss_pred chHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 163 LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+ .+..++|+|++|.|+-.. -..+..-++..+|+ +++++++
T Consensus 141 ~~-~~~~~vDvVf~d~~~~~~--~~~~l~~~~r~LKp-GG~lvI~ 181 (233)
T 4df3_A 141 YR-HLVEGVDGLYADVAQPEQ--AAIVVRNARFFLRD-GGYMLMA 181 (233)
T ss_dssp GT-TTCCCEEEEEECCCCTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred cc-cccceEEEEEEeccCChh--HHHHHHHHHHhccC-CCEEEEE
Confidence 43 345689999999998754 24555556677777 4566654
No 34
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=93.23 E-value=0.17 Score=44.40 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccccccc--------C--C---cceeecCCCCCCchH
Q 028404 99 TVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY--------G--S---DFAFYDYNQPQDLPL 165 (209)
Q Consensus 99 ~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~--------g--~---~FvfYDyn~P~~lp~ 165 (209)
.|++.+... . ++.+|+=|+|=+=...+.-...+.+++.+|++..--.. + . +|+.-|..+ +..
T Consensus 143 ~l~~~~~~~-~-~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~---~l~ 217 (332)
T 2igt_A 143 WLKNAVETA-D-RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK---FIQ 217 (332)
T ss_dssp HHHHHHHHS-S-SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH---HHH
T ss_pred HHHHHHHhc-C-CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHH---HHH
Confidence 355555422 2 46799999887544433211123389999998754321 1 0 233223211 122
Q ss_pred hh---cccccEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 166 EL---KHAFSVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 166 ~l---k~~fD~Vv~DPPFls----------eec~~K~A~Tik~L~k~~~~kiil 206 (209)
.+ ..+||+||+|||+.+ .+.+.++...+..++++ ++.|++
T Consensus 218 ~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp-gG~lli 270 (332)
T 2igt_A 218 REERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP-KALGLV 270 (332)
T ss_dssp HHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT-TCCEEE
T ss_pred HHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc-CcEEEE
Confidence 22 357999999999633 22344555555566676 445444
No 35
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=93.02 E-value=0.54 Score=40.01 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCC
Q 028404 97 AETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQ 161 (209)
Q Consensus 97 a~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~ 161 (209)
.+.|++.+++... .++.+|+=|||=|=.. .|.+. +..+++.+|++..-- .+| + +|+.-|...+
T Consensus 108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~- 185 (284)
T 1nv8_A 108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP- 185 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-
T ss_pred HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-
Confidence 3445555544321 1457899999885444 45555 777899999986322 222 1 4566666554
Q ss_pred CchHhhcccc---cEEEECCCCCCH
Q 028404 162 DLPLELKHAF---SVVVVDPPYLSK 183 (209)
Q Consensus 162 ~lp~~lk~~f---D~Vv~DPPFlse 183 (209)
+ .++| |+||++|||...
T Consensus 186 -~----~~~f~~~D~IvsnPPyi~~ 205 (284)
T 1nv8_A 186 -F----KEKFASIEMILSNPPYVKS 205 (284)
T ss_dssp -G----GGGTTTCCEEEECCCCBCG
T ss_pred -c----ccccCCCCEEEEcCCCCCc
Confidence 2 2568 999999999964
No 36
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=92.94 E-value=0.15 Score=45.56 Aligned_cols=91 Identities=10% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC------CcceeecCCCCCCchHhhcccccEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG------SDFAFYDYNQPQDLPLELKHAFSVV 174 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g------~~FvfYDyn~P~~lp~~lk~~fD~V 174 (209)
.+.+|+=|||=+=.. .+.+..|..+++.+|++...-. .| -+|+.-|..++ ++ .++||+|
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~--~~---~~~fD~I 296 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VE---PFRFNAV 296 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT--CC---TTCEEEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc--CC---CCCeeEE
Confidence 357999999985444 4445567789999999874421 12 03455555543 22 3589999
Q ss_pred EECCCCCCH-----HHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 175 VVDPPYLSK-----ECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 175 v~DPPFlse-----ec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|++|||... .-..++-..+..++++ ++++++.
T Consensus 297 i~nppfh~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~iv 333 (375)
T 4dcm_A 297 LCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIV 333 (375)
T ss_dssp EECCCC-------CCHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred EECCCcccCcccCHHHHHHHHHHHHHhCCC-CcEEEEE
Confidence 999999742 2222444555555666 4456553
No 37
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=92.92 E-value=0.29 Score=39.67 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=65.1
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCCCCCceEEeecccc--------cccC--C--cceeecC
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDY 157 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~~~~~~LLE~D~RF--------~~~g--~--~FvfYDy 157 (209)
.+..+...|...+... +..+|+=|||=+=+..+ .+..+..+++.+|++... ...| + +|+.-|.
T Consensus 55 ~~~~~~~~l~~~~~~~---~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (232)
T 3ntv_A 55 VDRLTLDLIKQLIRMN---NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA 131 (232)
T ss_dssp CCHHHHHHHHHHHHHH---TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred cCHHHHHHHHHHHhhc---CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence 4566666666555433 57899999997655543 333467789999999743 2222 1 3444444
Q ss_pred CCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 158 NQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
.+. +|..+.++||+|++|++...- ..+-..+..++++ ++.||+
T Consensus 132 ~~~--~~~~~~~~fD~V~~~~~~~~~---~~~l~~~~~~Lkp-gG~lv~ 174 (232)
T 3ntv_A 132 LEQ--FENVNDKVYDMIFIDAAKAQS---KKFFEIYTPLLKH-QGLVIT 174 (232)
T ss_dssp GGC--HHHHTTSCEEEEEEETTSSSH---HHHHHHHGGGEEE-EEEEEE
T ss_pred HHH--HHhhccCCccEEEEcCcHHHH---HHHHHHHHHhcCC-CeEEEE
Confidence 322 332456889999999986653 3444455556666 455655
No 38
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=92.60 E-value=0.35 Score=37.27 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccccc--------CC-cceeecCCCCCCchHhh
Q 028404 99 TVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY--------GS-DFAFYDYNQPQDLPLEL 167 (209)
Q Consensus 99 ~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~--------g~-~FvfYDyn~P~~lp~~l 167 (209)
.+.+.+..... ++.+|+=|||=+ +-..+.+..+. +++.+|++...... +. +|+.-|..+. .++
T Consensus 31 ~~~~~l~~~~~-~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-~~~--- 104 (215)
T 2pxx_A 31 SFRALLEPELR-PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-DFP--- 104 (215)
T ss_dssp HHHHHHGGGCC-TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-CSC---
T ss_pred HHHHHHHHhcC-CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-CCC---
Confidence 36666666654 678999999874 33334443222 89999998643221 11 4555665442 122
Q ss_pred cccccEEEECCCCCC---------------HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 168 KHAFSVVVVDPPYLS---------------KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 168 k~~fD~Vv~DPPFls---------------eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++||+|++.+||.. .+-..++-..+..++++ ++++|+.+
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~ 159 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP-GGRFISMT 159 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcC-CCEEEEEe
Confidence 367999999988732 22234555556666676 45677654
No 39
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=92.58 E-value=0.51 Score=35.43 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=55.2
Q ss_pred CCCeEEEEeCchHHHHH--HhhCCCCCceEEeecccccc--------cCC--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQ--------YGS--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~~L--k~~~~~~~~~LLE~D~RF~~--------~g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
++.+|+=|||=+=+..+ .+..+..+++.+|++..... +|- +. ++.-+.+..+|. ..++||+|++..
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~-~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD-VPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG-CCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc-cCCCCCEEEECC
Confidence 56799999998655543 34456678999999874322 221 23 443333333332 226899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 179 PYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 179 PFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++..+ ++-..+..++++ ++++++.+
T Consensus 103 ~~~~~----~~l~~~~~~L~~-gG~l~~~~ 127 (178)
T 3hm2_A 103 GLTAP----GVFAAAWKRLPV-GGRLVANA 127 (178)
T ss_dssp -TTCT----THHHHHHHTCCT-TCEEEEEE
T ss_pred cccHH----HHHHHHHHhcCC-CCEEEEEe
Confidence 98773 333445556676 45777654
No 40
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=92.45 E-value=0.44 Score=35.92 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=57.4
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----C-CcceeecCCCCCCchHhhcccccEEEECCCCC-
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----G-SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYL- 181 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g-~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl- 181 (209)
++.+|+=|||=+=.. .+.+. +.+++.+|++...... . -+|+.-|.... .++ .++||+|++.|+.+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~---~~~~D~i~~~~~~~~ 119 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVD-QIS---ETDFDLIVSAGNVMG 119 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTS-CCC---CCCEEEEEECCCCGG
T ss_pred CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccC-CCC---CCceeEEEECCcHHh
Confidence 678999999864332 34432 4589999998744221 1 14566665542 122 36799999998764
Q ss_pred --CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 182 --SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 182 --seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+.+-..++-..+..++++ ++++++.+
T Consensus 120 ~~~~~~~~~~l~~~~~~l~~-~G~l~~~~ 147 (195)
T 3cgg_A 120 FLAEDGREPALANIHRALGA-DGRAVIGF 147 (195)
T ss_dssp GSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred hcChHHHHHHHHHHHHHhCC-CCEEEEEe
Confidence 344456666677777776 55677653
No 41
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=92.28 E-value=0.14 Score=41.68 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=33.5
Q ss_pred ceeecCCCCCCchHh-hcccccEEEECCCCCCH---------HHHHHHHHHHHHhcCCCCCcEEE
Q 028404 152 FAFYDYNQPQDLPLE-LKHAFSVVVVDPPYLSK---------ECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 152 FvfYDyn~P~~lp~~-lk~~fD~Vv~DPPFlse---------ec~~K~A~Tik~L~k~~~~kiil 206 (209)
|+.-|...+...... ...+||+||++|||... +-..++...+..++++ ++.|++
T Consensus 149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~ 212 (250)
T 1o9g_A 149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA-HAVIAV 212 (250)
T ss_dssp EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT-TCEEEE
T ss_pred eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC-CcEEEE
Confidence 777777654211001 12379999999999753 3334666666667777 456666
No 42
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=92.22 E-value=0.091 Score=44.38 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=60.1
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------C--C--ccee
Q 028404 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G--S--DFAF 154 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g--~--~Fvf 154 (209)
-|||.....++ ..+.+... ++.+|+=++|=+=+.. +.+..+. +++-+|++..--.+ | . +|+.
T Consensus 106 ~~f~~~~~~~~--~~l~~~~~-~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~ 181 (278)
T 2frn_A 106 IMFSPANVKER--VRMAKVAK-PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN 181 (278)
T ss_dssp SCCCGGGHHHH--HHHHHHCC-TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred eeEcCCcHHHH--HHHHHhCC-CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 56777733332 11222333 5789998888753332 2222232 69999998743221 1 1 3555
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-|..+... .++||+|++|||+...+.+. ...+ ++++ ++.|++++
T Consensus 182 ~D~~~~~~-----~~~fD~Vi~~~p~~~~~~l~---~~~~-~Lkp-gG~l~~~~ 225 (278)
T 2frn_A 182 MDNRDFPG-----ENIADRILMGYVVRTHEFIP---KALS-IAKD-GAIIHYHN 225 (278)
T ss_dssp SCTTTCCC-----CSCEEEEEECCCSSGGGGHH---HHHH-HEEE-EEEEEEEE
T ss_pred CCHHHhcc-----cCCccEEEECCchhHHHHHH---HHHH-HCCC-CeEEEEEE
Confidence 55544321 57899999999998865443 3344 4555 45677654
No 43
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=92.18 E-value=0.48 Score=37.40 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=62.4
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC-CCCceEEeecccc--------cccC--C--ccee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDMRF--------EQYG--S--DFAF 154 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~-~~~~~LLE~D~RF--------~~~g--~--~Fvf 154 (209)
+-.+..+...|...+... +..+|+=|||=+=+.. |.+..+ ..+++.+|++... ...| + +|+.
T Consensus 46 ~~~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 122 (225)
T 3tr6_A 46 MQTAPEQAQLLALLVKLM---QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL 122 (225)
T ss_dssp GSCCHHHHHHHHHHHHHH---TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred cccCHHHHHHHHHHHHhh---CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 446677777666655444 5689999999765543 333344 6789999999743 3222 1 2333
Q ss_pred ecCCCCCCchHhhc-----ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 155 YDYNQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 155 YDyn~P~~lp~~lk-----~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
=|.. ++...+. ++||+|++|+|... ...+-..+..++++ ++.||+
T Consensus 123 ~d~~---~~~~~~~~~~~~~~fD~v~~~~~~~~---~~~~l~~~~~~L~p-gG~lv~ 172 (225)
T 3tr6_A 123 SPAK---DTLAELIHAGQAWQYDLIYIDADKAN---TDLYYEESLKLLRE-GGLIAV 172 (225)
T ss_dssp SCHH---HHHHHHHTTTCTTCEEEEEECSCGGG---HHHHHHHHHHHEEE-EEEEEE
T ss_pred CCHH---HHHHHhhhccCCCCccEEEECCCHHH---HHHHHHHHHHhcCC-CcEEEE
Confidence 2321 1222333 78999999998432 23444445556666 455654
No 44
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=92.07 E-value=1.3 Score=34.95 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=60.8
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC-CCCceEEeecccccc--------cC--C--cceeec
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDMRFEQ--------YG--S--DFAFYD 156 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~-~~~~~LLE~D~RF~~--------~g--~--~FvfYD 156 (209)
-+..+...|...+... ++.+|+=|||=+=+.. |.+..+ +.+++.+|++..... .| + +|+.=|
T Consensus 42 ~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 118 (223)
T 3duw_A 42 VSPTQGKFLQLLVQIQ---GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGL 118 (223)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3566666665554433 5789999999865553 333344 678999999874432 22 1 233333
Q ss_pred CCCCCCchHhh----cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 157 YNQPQDLPLEL----KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 157 yn~P~~lp~~l----k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
..+ +...+ .++||+|++|++... ...+-..+..++++ ++.|++
T Consensus 119 ~~~---~~~~~~~~~~~~fD~v~~d~~~~~---~~~~l~~~~~~L~p-gG~lv~ 165 (223)
T 3duw_A 119 ALD---SLQQIENEKYEPFDFIFIDADKQN---NPAYFEWALKLSRP-GTVIIG 165 (223)
T ss_dssp HHH---HHHHHHHTTCCCCSEEEECSCGGG---HHHHHHHHHHTCCT-TCEEEE
T ss_pred HHH---HHHHHHhcCCCCcCEEEEcCCcHH---HHHHHHHHHHhcCC-CcEEEE
Confidence 221 11222 157999999998432 24445555566676 445554
No 45
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=92.05 E-value=0.058 Score=45.03 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------c---cC--C--cceeecCCCCCCchH----hh-c
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------Q---YG--S--DFAFYDYNQPQDLPL----EL-K 168 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~---~g--~--~FvfYDyn~P~~lp~----~l-k 168 (209)
++.+|+=|||=+=.. .|....|..+++.+|+|.... . .+ + +|+.-|..+. ++. .+ .
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR--AKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC--HHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH--hhhhhhhccCC
Confidence 467899888875433 344445667899999997532 2 21 1 3555666554 121 12 4
Q ss_pred ccccEEEECCCCCCHH------------------HHHHHHHHHHHhcCCCCCcEEEec
Q 028404 169 HAFSVVVVDPPYLSKE------------------CLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 169 ~~fD~Vv~DPPFlsee------------------c~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++||+||++|||.... -++.+...+..++++ ++++++..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS-GGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC-CCEEEEEE
Confidence 6899999999998641 135556666677776 45676654
No 46
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=91.95 E-value=0.22 Score=41.42 Aligned_cols=111 Identities=10% Similarity=0.134 Sum_probs=73.6
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC-CCCceEEeeccccc--------ccCC--cceee
Q 028404 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDMRFE--------QYGS--DFAFY 155 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~-~~~~~LLE~D~RF~--------~~g~--~FvfY 155 (209)
++||++.....+.+.+.... +..+|+=|||=+=... |.+..| +.+++.+|++...- ..+. .|+.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~ 79 (284)
T 3gu3_A 2 DLYYNDDYVSFLVNTVWKIT--KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG 79 (284)
T ss_dssp TTTCCHHHHHHHHHTTSCCC--SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEES
T ss_pred CcccchHHHHHHHHHHhccC--CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEc
Confidence 68999999999988876653 5789999999865543 444455 46899999987433 2221 56666
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|..+. | +.++||+|++.-.+....-+.++-..+..+++| ++.|++.
T Consensus 80 d~~~~---~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 125 (284)
T 3gu3_A 80 DATEI---E--LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKK-GGKIICF 125 (284)
T ss_dssp CTTTC---C--CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEE
T ss_pred chhhc---C--cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCC-CCEEEEE
Confidence 76542 2 136899999977654432234555556666776 4566654
No 47
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=91.91 E-value=0.22 Score=43.19 Aligned_cols=102 Identities=10% Similarity=0.208 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccc--------cCC--cceeecCCCCCCc
Q 028404 96 TAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQ--------YGS--DFAFYDYNQPQDL 163 (209)
Q Consensus 96 Ta~~La~~l~~~a~~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~--------~g~--~FvfYDyn~P~~l 163 (209)
..+.|++.+... ...+|+=|||=+=. ..+.+..|..+++.+|++...-. .+- +|+.-|...
T Consensus 184 ~~~~ll~~l~~~---~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~---- 256 (343)
T 2pjd_A 184 GSQLLLSTLTPH---TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS---- 256 (343)
T ss_dssp HHHHHHHHSCTT---CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT----
T ss_pred HHHHHHHhcCcC---CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc----
Confidence 344555444221 45688888887433 34445567779999999975322 221 343334322
Q ss_pred hHhhcccccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 164 PLELKHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFls-----eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
...++||+||++|||-. .+-..++-..+..++++ ++++++.
T Consensus 257 --~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 302 (343)
T 2pjd_A 257 --EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS-GGELRIV 302 (343)
T ss_dssp --TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE-EEEEEEE
T ss_pred --cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCC-CcEEEEE
Confidence 12468999999999963 33344555555566666 4566664
No 48
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=91.89 E-value=0.42 Score=41.24 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=48.4
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhC-CCCCceEEeeccccc--------ccCC---cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIR-PEVSPKILEYDMRFE--------QYGS---DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~-~~~~~~LLE~D~RF~--------~~g~---~FvfY 155 (209)
|+--+..+..++. ++... ++.+|+=+||=+=.. .|.+.. +..+++-+|++.... .+|- +|+.-
T Consensus 100 ~~~qd~~s~l~~~-~l~~~--~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~ 176 (315)
T 1ixk_A 100 IYIQEASSMYPPV-ALDPK--PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS 176 (315)
T ss_dssp EEECCHHHHHHHH-HHCCC--TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS
T ss_pred EEEeCHHHHHHHH-HhCCC--CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4444555544444 44432 577999888764333 333332 346799999986432 2221 34444
Q ss_pred cCCCCCCchHhhcccccEEEECCCCC
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYL 181 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (209)
|... ++. +.++||+|++|||+-
T Consensus 177 D~~~---~~~-~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 177 SSLH---IGE-LNVEFDKILLDAPCT 198 (315)
T ss_dssp CGGG---GGG-GCCCEEEEEEECCTT
T ss_pred Chhh---ccc-ccccCCEEEEeCCCC
Confidence 4432 222 456899999999964
No 49
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=91.88 E-value=0.37 Score=38.17 Aligned_cols=110 Identities=21% Similarity=0.122 Sum_probs=63.7
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC-CCCceEEeeccccccc--------C--C--c
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDMRFEQY--------G--S--D 151 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~-~~~~~LLE~D~RF~~~--------g--~--~ 151 (209)
...+..+..+...|...+ ... +..+|+=|||=+=+.. +.+..+ ..+++.+|++...... | . +
T Consensus 48 ~~~~~~~~~~~~~l~~l~-~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~ 124 (229)
T 2avd_A 48 QGDSMMTCEQAQLLANLA-RLI--QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124 (229)
T ss_dssp TGGGSCCHHHHHHHHHHH-HHT--TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEE
T ss_pred CCCCccCHHHHHHHHHHH-Hhc--CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEE
Confidence 345667777777765544 332 5789999999865543 333334 5689999998755322 2 1 2
Q ss_pred ceeecCCCCCCchHhhc-----ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 152 FAFYDYNQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk-----~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
|+.-|.. +....+. ++||+|++|||...- ..+-..+..++++ ++.|++
T Consensus 125 ~~~~d~~---~~~~~~~~~~~~~~~D~v~~d~~~~~~---~~~l~~~~~~L~p-gG~lv~ 177 (229)
T 2avd_A 125 LRLKPAL---ETLDELLAAGEAGTFDVAVVDADKENC---SAYYERCLQLLRP-GGILAV 177 (229)
T ss_dssp EEESCHH---HHHHHHHHTTCTTCEEEEEECSCSTTH---HHHHHHHHHHEEE-EEEEEE
T ss_pred EEEcCHH---HHHHHHHhcCCCCCccEEEECCCHHHH---HHHHHHHHHHcCC-CeEEEE
Confidence 2222221 1112232 689999999995442 3334444455555 445655
No 50
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=91.85 E-value=0.13 Score=49.98 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=64.0
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeeccccccc--------C---C--cc
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G---S--DF 152 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~~--------g---~--~F 152 (209)
..-+|++..-.+.++..+ + .+.+|+=++|=|=...+.-. ....+++-+|++...-.. | + +|
T Consensus 520 ~tG~f~d~r~~r~~l~~~---~--~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~ 594 (703)
T 3v97_A 520 DTGLFLDHRIARRMLGQM---S--KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRL 594 (703)
T ss_dssp SCSCCGGGHHHHHHHHHH---C--TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEE
T ss_pred cCCCcccHHHHHHHHHHh---c--CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence 344667665555444433 2 46799999887655544322 122358999999754322 1 1 23
Q ss_pred eeecCCCCCCchHhhcccccEEEECCCCCCH-----------HHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLSK-----------ECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse-----------ec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.-|..+ +.....++||+||+|||+.+. .-..++...+..++++ ++.|++||.
T Consensus 595 i~~D~~~---~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp-gG~L~~s~~ 658 (703)
T 3v97_A 595 IQADCLA---WLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA-GGTIMFSNN 658 (703)
T ss_dssp EESCHHH---HHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEE-EEEEEEEEC
T ss_pred EecCHHH---HHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCC-CcEEEEEEC
Confidence 3333221 112234689999999998642 2233444445556666 457777763
No 51
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=91.81 E-value=0.43 Score=37.17 Aligned_cols=93 Identities=16% Similarity=0.062 Sum_probs=53.8
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC------Cccee
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG------SDFAF 154 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g------~~Fvf 154 (209)
..+.+.||-=....+..++..+......++.+|+=|||=+=.. .+.+. +..+++.+|++....... -+|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 101 (200)
T 1ne2_A 23 FKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMV 101 (200)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEE
T ss_pred cccceeecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 4566777777777778888776644222567999999885444 33332 334699999997554321 13444
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
-|..+ +| ++||+||+||||...
T Consensus 102 ~d~~~---~~----~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 102 ADVSE---IS----GKYDTWIMNPPFGSV 123 (200)
T ss_dssp CCGGG---CC----CCEEEEEECCCC---
T ss_pred CcHHH---CC----CCeeEEEECCCchhc
Confidence 44432 22 689999999999754
No 52
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=91.76 E-value=0.15 Score=47.32 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=49.2
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhh-CCCCCceEEeeccccc--------ccC-C--cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFE--------QYG-S--DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~RF~--------~~g-~--~FvfY 155 (209)
|+--|.++..++.. +... ++.+|+=+||=+=... |... .....++-+|++..-. .+| . .++.-
T Consensus 87 ~~vQd~ss~l~~~~-L~~~--~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~ 163 (456)
T 3m4x_A 87 EYSQEPSAMIVGTA-AAAK--PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNH 163 (456)
T ss_dssp CEECCTTTHHHHHH-HCCC--TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECC
T ss_pred EEEECHHHHHHHHH-cCCC--CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC
Confidence 44445555444444 4432 6789998888643332 2222 2335788899987322 222 1 22222
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCC
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
| +..++..+.++||+||+|||..+
T Consensus 164 D---a~~l~~~~~~~FD~Il~DaPCSg 187 (456)
T 3m4x_A 164 A---PAELVPHFSGFFDRIVVDAPCSG 187 (456)
T ss_dssp C---HHHHHHHHTTCEEEEEEECCCCC
T ss_pred C---HHHhhhhccccCCEEEECCCCCC
Confidence 3 23345556688999999999754
No 53
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=91.68 E-value=0.09 Score=46.24 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=13.1
Q ss_pred ccccEEEECCCCCCH
Q 028404 169 HAFSVVVVDPPYLSK 183 (209)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (209)
+++|+|++||||...
T Consensus 57 ~svDlI~tDPPY~~~ 71 (319)
T 1eg2_A 57 DSVQLIICDPPYNIM 71 (319)
T ss_dssp TCEEEEEECCCSBCC
T ss_pred CCcCEEEECCCCCCC
Confidence 579999999999764
No 54
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=91.53 E-value=0.3 Score=39.23 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccc----cccc----CC-cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMR----FEQY----GS-DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~R----F~~~----g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
++.+|+=|||=+=.. .|.+. .+..+++-+|++.+ .... .. +|+.-|..++..+| ...++||+|++||
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~-~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR-MLIAMVDVIFADV 155 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGG-GGCCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhc-ccCCcEEEEEEcC
Confidence 577999999875433 34333 35568999999842 2111 12 56666777654333 2346899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 PYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 PFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|.... ...+...+..++++ ++.++++
T Consensus 156 ~~~~~--~~~~~~~~~~~Lkp-gG~l~i~ 181 (233)
T 2ipx_A 156 AQPDQ--TRIVALNAHTFLRN-GGHFVIS 181 (233)
T ss_dssp CCTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCccH--HHHHHHHHHHHcCC-CeEEEEE
Confidence 93322 23444545566666 4566654
No 55
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=91.45 E-value=1 Score=37.76 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=65.4
Q ss_pred ccccChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHHHH--HhhCCCCCceEEee-cccc-------------cccC--
Q 028404 89 QFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYL--KKIRPEVSPKILEY-DMRF-------------EQYG-- 149 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~-~~~~rIaclstPSly~~L--k~~~~~~~~~LLE~-D~RF-------------~~~g-- 149 (209)
.|| .....|++.+.+... ..+.+|+=|||=+=+..+ .+ ....+++.+|+ +... ...+
T Consensus 59 ~~~---~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~-~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~ 134 (281)
T 3bzb_A 59 HVW---SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFL-AGADQVVATDYPDPEILNSLESNIREHTANSCSSE 134 (281)
T ss_dssp ------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHH-TTCSEEEEEECSCHHHHHHHHHHHHTTCC------
T ss_pred eee---cHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHH-cCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccc
Confidence 456 345667777766542 156799999998655433 22 22247999999 7422 1111
Q ss_pred -----C-cceeecCCCCC-CchHhh-cccccEEEE-CCCCCCHHHHHHHHHHHHHhcC---CC-CCcEEE
Q 028404 150 -----S-DFAFYDYNQPQ-DLPLEL-KHAFSVVVV-DPPYLSKECLEKVSETVSFLAR---PG-DSKLLL 206 (209)
Q Consensus 150 -----~-~FvfYDyn~P~-~lp~~l-k~~fD~Vv~-DPPFlseec~~K~A~Tik~L~k---~~-~~kiil 206 (209)
. ++..+|...+. .++..+ .++||+||+ |++|.... ..++..+++.+++ +. ++++++
T Consensus 135 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~-~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 135 TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA-HDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ----CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG-HHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHH-HHHHHHHHHHHhcccCCCCCCEEEE
Confidence 1 35555655432 233222 468998876 99998655 5777888888888 61 445444
No 56
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=90.66 E-value=3.6 Score=31.91 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=55.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||=+=+. .+.+..|..+++.+|++..... +| + +++.-|..+. ++. + ++||+|+++
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~-~-~~~D~i~~~ 115 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG--LDD-L-PDPDRVFIG 115 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT--CTT-S-CCCSEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh--hhc-C-CCCCEEEEC
Confidence 578999999975443 3444466778999999874322 22 1 3444444322 221 1 579999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+++... .++-..+..++++ +++|++.
T Consensus 116 ~~~~~~---~~~l~~~~~~Lkp-gG~l~~~ 141 (204)
T 3e05_A 116 GSGGML---EEIIDAVDRRLKS-EGVIVLN 141 (204)
T ss_dssp CCTTCH---HHHHHHHHHHCCT-TCEEEEE
T ss_pred CCCcCH---HHHHHHHHHhcCC-CeEEEEE
Confidence 998733 4555566666676 4567765
No 57
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=90.62 E-value=0.46 Score=37.06 Aligned_cols=102 Identities=11% Similarity=-0.018 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccc--------cC---CcceeecCCCC
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ--------YG---SDFAFYDYNQP 160 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~--------~g---~~FvfYDyn~P 160 (209)
..+...+.+.+..... ++.+|+=|||=+=... +.+ .+..+++.+|++..... .+ -+|+.-|....
T Consensus 44 ~~~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 121 (205)
T 3grz_A 44 HQTTQLAMLGIERAMV-KPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD 121 (205)
T ss_dssp HHHHHHHHHHHHHHCS-SCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT
T ss_pred CccHHHHHHHHHHhcc-CCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 3566677777776654 6789999999854443 333 34558999999874322 22 13444454332
Q ss_pred CCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 161 QDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..++||+|+++||+ +.+.++...+..++++ +++++++
T Consensus 122 ------~~~~fD~i~~~~~~---~~~~~~l~~~~~~L~~-gG~l~~~ 158 (205)
T 3grz_A 122 ------VDGKFDLIVANILA---EILLDLIPQLDSHLNE-DGQVIFS 158 (205)
T ss_dssp ------CCSCEEEEEEESCH---HHHHHHGGGSGGGEEE-EEEEEEE
T ss_pred ------CCCCceEEEECCcH---HHHHHHHHHHHHhcCC-CCEEEEE
Confidence 23789999999987 3345555556666666 4567664
No 58
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=90.44 E-value=0.14 Score=45.28 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=50.0
Q ss_pred CCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------C-C--cceeecCCCCCCchHhh---cccccEEE
Q 028404 112 DSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQDLPLEL---KHAFSVVV 175 (209)
Q Consensus 112 ~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn~P~~lp~~l---k~~fD~Vv 175 (209)
+.+|+=++|=+=... +... ..+++-+|++...-.. | . +|+.-|..+ +...+ ..+||+||
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~---~~~~~~~~~~~fD~Ii 284 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD---LLRRLEKEGERFDLVV 284 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHH---HHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHH---HHHHHHhcCCCeeEEE
Confidence 568888888643332 2222 3478999998743221 1 1 233333221 22222 45799999
Q ss_pred ECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 176 VDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 176 ~DPPFls----------eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|||+.. +.+ .++...+..++++ ++.|+++|
T Consensus 285 ~dpP~~~~~~~~~~~~~~~~-~~~l~~~~~~Lkp-gG~l~~~~ 325 (382)
T 1wxx_A 285 LDPPAFAKGKKDVERAYRAY-KEVNLRAIKLLKE-GGILATAS 325 (382)
T ss_dssp ECCCCSCCSTTSHHHHHHHH-HHHHHHHHHTEEE-EEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHH-HHHHHHHHHhcCC-CCEEEEEE
Confidence 9999965 333 3333444444555 45677765
No 59
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=90.07 E-value=0.36 Score=37.88 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=68.6
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccc--------ccC-C-
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFE--------QYG-S- 150 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~--------~~g-~- 150 (209)
.|...|+|........+.+.+. . . ++.+|+-|||=+=+. .|.+. .+..+++.+|++.... ..| .
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 129 (215)
T 2yxe_A 53 EIGYGQTISAIHMVGMMCELLD-L-K-PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN 129 (215)
T ss_dssp EEETTEEECCHHHHHHHHHHTT-C-C-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT
T ss_pred cCCCCcEeCcHHHHHHHHHhhC-C-C-CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence 4566788888888877777652 2 2 578999999975433 33333 2446899999986432 222 1
Q ss_pred -cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+|+.-|...+ ++ -.++||+|+++.++-.-. ..+..++++ +++|++.+|
T Consensus 130 v~~~~~d~~~~--~~--~~~~fD~v~~~~~~~~~~------~~~~~~L~p-gG~lv~~~~ 178 (215)
T 2yxe_A 130 VIVIVGDGTLG--YE--PLAPYDRIYTTAAGPKIP------EPLIRQLKD-GGKLLMPVG 178 (215)
T ss_dssp EEEEESCGGGC--CG--GGCCEEEEEESSBBSSCC------HHHHHTEEE-EEEEEEEES
T ss_pred eEEEECCcccC--CC--CCCCeeEEEECCchHHHH------HHHHHHcCC-CcEEEEEEC
Confidence 3444444332 22 136799999998875431 244556666 457777654
No 60
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=90.06 E-value=0.99 Score=38.92 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=49.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc-------------cCC---cceeecCCCCCCchHhhccccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ-------------YGS---DFAFYDYNQPQDLPLELKHAFS 172 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~-------------~g~---~FvfYDyn~P~~lp~~lk~~fD 172 (209)
+.++|+.|||=+=.. .+.+..+..++..+|+|...-. +.+ +++.=|..+.. ....++||
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~~~~~fD 159 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV---NQTSQTFD 159 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC------CCCCCEE
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHH---hhcCCCcc
Confidence 578999999975433 3444334568999999984321 111 34444443321 11246899
Q ss_pred EEEECCCCCC--HHHH--HHHHHHHHHhcCCCCCcEEEe
Q 028404 173 VVVVDPPYLS--KECL--EKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 173 ~Vv~DPPFls--eec~--~K~A~Tik~L~k~~~~kiilc 207 (209)
+||+|+|--. .+-+ ..+-+.++.++++ ++.+++-
T Consensus 160 vIi~D~~~p~~~~~~l~~~~f~~~~~~~Lkp-gG~lv~~ 197 (294)
T 3adn_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNP-GGIFVAQ 197 (294)
T ss_dssp EEEECC----------CCHHHHHHHHHTEEE-EEEEEEE
T ss_pred EEEECCCCccCcchhccHHHHHHHHHHhcCC-CCEEEEe
Confidence 9999987421 1111 2344455666666 4455553
No 61
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=90.04 E-value=0.15 Score=45.20 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=59.1
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeecccccc--------cC---C-cceee
Q 028404 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQ--------YG---S-DFAFY 155 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~--------~g---~-~FvfY 155 (209)
-||++..-...++. .... ++.+|+=++|=+=...+.-. .+..+++-+|++...-. .| . +|+.-
T Consensus 199 g~f~~~~~~~~~~~---~~~~-~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~ 274 (396)
T 2as0_A 199 GFFLDQRENRLALE---KWVQ-PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 274 (396)
T ss_dssp CCCSTTHHHHHHHG---GGCC-TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred CccCCHHHHHHHHH---HHhh-CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC
Confidence 36665444433333 3332 56799988887544432211 22347999999875321 11 1 23333
Q ss_pred cCCCCCCchHhh---cccccEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 156 DYNQPQDLPLEL---KHAFSVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 156 Dyn~P~~lp~~l---k~~fD~Vv~DPPFls----------eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|..+ ++..+ .++||+||+|||+.. ..+..-+..+++ ++++ ++.|+++|
T Consensus 275 d~~~---~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~-~Lkp-gG~lv~~~ 335 (396)
T 2as0_A 275 SAFE---EMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLN-LVKD-GGILVTCS 335 (396)
T ss_dssp CHHH---HHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHT-TEEE-EEEEEEEE
T ss_pred CHHH---HHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH-hcCC-CcEEEEEE
Confidence 3321 22222 357999999999976 344333344444 4444 34666654
No 62
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=90.03 E-value=0.14 Score=45.31 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------C--C---cceeecCCCCCCchHhh---ccccc
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G--S---DFAFYDYNQPQDLPLEL---KHAFS 172 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g--~---~FvfYDyn~P~~lp~~l---k~~fD 172 (209)
++.+|+=++|=+=... +... ...+++-+|++..--.. | . +|+.=|..+ +...+ ..+||
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~---~~~~~~~~~~~fD 295 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK---LLRTYRDRGEKFD 295 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHH---HHHHHHHTTCCEE
T ss_pred CCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH---HHHHHHhcCCCCC
Confidence 5678988877643322 2221 23479999998643211 1 0 233333221 22222 35799
Q ss_pred EEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 173 VVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 173 ~Vv~DPPFls----------eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+||+|||+.+ +.+..-+..+++.|. + ++.|+++|
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-p-gG~l~~~~ 339 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-E-GGILLTFS 339 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE-E-EEEEEEEE
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-C-CcEEEEEe
Confidence 9999999965 444444555555554 4 34566654
No 63
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=89.66 E-value=0.058 Score=41.09 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcC--CCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccc--------cC--C--cceeecCCC
Q 028404 96 TAETVAQEAVSLCS--DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQ 159 (209)
Q Consensus 96 Ta~~La~~l~~~a~--~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~ 159 (209)
|...+++.+.+... .++.+|+=+||=+=... +.+ .+..+++.+|++..... .+ + +|+.-|..+
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 33444444444331 15678998988754432 222 24458999999874432 11 1 233334322
Q ss_pred CCCchHhh---cccccEEEECCCCCCHHHHHHHHHHH--HHhcCCCCCcEEEec
Q 028404 160 PQDLPLEL---KHAFSVVVVDPPYLSKECLEKVSETV--SFLARPGDSKLLLLT 208 (209)
Q Consensus 160 P~~lp~~l---k~~fD~Vv~DPPFlseec~~K~A~Ti--k~L~k~~~~kiilcT 208 (209)
+...+ .++||+|++||||.... ..+....+ ..++++ ++.|++++
T Consensus 106 ---~~~~~~~~~~~fD~i~~~~~~~~~~-~~~~~~~l~~~~~L~~-gG~l~~~~ 154 (187)
T 2fhp_A 106 ---ALEQFYEEKLQFDLVLLDPPYAKQE-IVSQLEKMLERQLLTN-EAVIVCET 154 (187)
T ss_dssp ---HHHHHHHTTCCEEEEEECCCGGGCC-HHHHHHHHHHTTCEEE-EEEEEEEE
T ss_pred ---HHHHHHhcCCCCCEEEECCCCCchh-HHHHHHHHHHhcccCC-CCEEEEEe
Confidence 11112 46899999999986321 23333333 333455 45677664
No 64
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=89.44 E-value=0.23 Score=43.89 Aligned_cols=94 Identities=10% Similarity=-0.004 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCCCCeE--EEEeCchHHHHHHhhCCCCCceEEeecccccc-cCCc------ceeecCCCCCCchHhh
Q 028404 97 AETVAQEAVSLCSDSDSRV--ACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ-YGSD------FAFYDYNQPQDLPLEL 167 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rI--aclstPSly~~Lk~~~~~~~~~LLE~D~RF~~-~g~~------FvfYDyn~P~~lp~~l 167 (209)
...+.+.|... +..++ ++-|+|.|-..... +..+++++|.+.+=.. ...+ ...+.-.--.-+...+
T Consensus 80 l~~yf~~l~~~---n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~ 154 (283)
T 2oo3_A 80 FLEYISVIKQI---NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALL 154 (283)
T ss_dssp GHHHHHHHHHH---SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHC
T ss_pred HHHHHHHHHHh---cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhc
Confidence 44566666554 33444 78888887765543 3357788887764322 1211 1222111000011111
Q ss_pred c--ccccEEEECCCCCCHHHHHHHHHHHHH
Q 028404 168 K--HAFSVVVVDPPYLSKECLEKVSETVSF 195 (209)
Q Consensus 168 k--~~fD~Vv~DPPFlseec~~K~A~Tik~ 195 (209)
+ .+||+|++||||...+-++++..++..
T Consensus 155 ~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 155 PPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 1 259999999999953224555554443
No 65
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=89.33 E-value=0.43 Score=37.82 Aligned_cols=111 Identities=12% Similarity=-0.038 Sum_probs=68.8
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cCC-c
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YGS-D 151 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g~-~ 151 (209)
-.|...|.|-.......+++.+.- . ++.+|+=|||=+=+. .|.+.. .+++.+|++..... .+. +
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~ 119 (231)
T 1vbf_A 45 LPILPGINTTALNLGIFMLDELDL--H-KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIK 119 (231)
T ss_dssp EEEETTEEECCHHHHHHHHHHTTC--C-TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEE
T ss_pred eeeCCCCccCCHHHHHHHHHhcCC--C-CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeE
Confidence 346667888888888877776632 2 578999999975443 333332 57899999874432 221 3
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
|+.-|...+ ++ ..++||+|+++.++-.-. ..+..++++ +++|++.++
T Consensus 120 ~~~~d~~~~--~~--~~~~fD~v~~~~~~~~~~------~~~~~~L~p-gG~l~~~~~ 166 (231)
T 1vbf_A 120 LILGDGTLG--YE--EEKPYDRVVVWATAPTLL------CKPYEQLKE-GGIMILPIG 166 (231)
T ss_dssp EEESCGGGC--CG--GGCCEEEEEESSBBSSCC------HHHHHTEEE-EEEEEEEEC
T ss_pred EEECCcccc--cc--cCCCccEEEECCcHHHHH------HHHHHHcCC-CcEEEEEEc
Confidence 444454432 22 246899999998765321 234456666 457777654
No 66
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=89.23 E-value=0.39 Score=40.66 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=50.9
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccCCcceee--cC-------CCCC------CchHhh--cccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYGSDFAFY--DY-------NQPQ------DLPLEL--KHAF 171 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g~~FvfY--Dy-------n~P~------~lp~~l--k~~f 171 (209)
...+|+-|||=+=.. .+.+. +..++..+|+|...-....++..+ .+ +.|. +.-..+ .++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 568999999985444 34443 556899999997654321111111 00 0110 111111 5689
Q ss_pred cEEEECCCCCCH--HH--HHHHHHHHHHhcCCCCCcEEEec
Q 028404 172 SVVVVDPPYLSK--EC--LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 172 D~Vv~DPPFlse--ec--~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|+||+|+|.-.. +- ...+-+.++.++++ ++.+++.+
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNN-PGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEE-EEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEEc
Confidence 999999985311 10 12333444555665 45666544
No 67
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=89.05 E-value=0.25 Score=44.01 Aligned_cols=113 Identities=9% Similarity=0.130 Sum_probs=58.3
Q ss_pred ccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeeccccccc--------C----C-ccee
Q 028404 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G----S-DFAF 154 (209)
Q Consensus 89 QFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~~--------g----~-~Fvf 154 (209)
-||.+....+.+....+ . ++.+|+=++|=+=...+.-. ....+++-+|++..--.. | . +|+.
T Consensus 194 ~ff~~~~~~~~~~~~~~---~-~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~ 269 (385)
T 2b78_A 194 GIFLDQRQVRNELINGS---A-AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269 (385)
T ss_dssp SSCGGGHHHHHHHHHTT---T-BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred CcCCcHHHHHHHHHHHh---c-CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 44455554444444332 2 56899999887654443321 122378999998854221 1 1 2333
Q ss_pred ecCCCCCCchHhh--cccccEEEECCCCCCH------HH---HHHHHHHHHHhcCCCCCcEEEec
Q 028404 155 YDYNQPQDLPLEL--KHAFSVVVVDPPYLSK------EC---LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 155 YDyn~P~~lp~~l--k~~fD~Vv~DPPFlse------ec---~~K~A~Tik~L~k~~~~kiilcT 208 (209)
=|..+ -++... ..+||+||+|||+.+. +. +.++...+..++++ ++.|++++
T Consensus 270 ~D~~~--~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p-gG~l~~~~ 331 (385)
T 2b78_A 270 MDVFD--YFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE-NGLIIAST 331 (385)
T ss_dssp SCHHH--HHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CCHHH--HHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 33221 122211 2479999999999631 11 22233333455565 44676665
No 68
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=88.95 E-value=1.1 Score=36.74 Aligned_cols=106 Identities=17% Similarity=0.063 Sum_probs=61.0
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC-CCCceEEeecccccc--------cC--C--cceeec
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDMRFEQ--------YG--S--DFAFYD 156 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~-~~~~~LLE~D~RF~~--------~g--~--~FvfYD 156 (209)
-+..+...|...+... +..+|+=|||=+=+.. |.+..| +.+++.+|++..... .| + +|+.-|
T Consensus 47 ~~~~~~~~l~~l~~~~---~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 123 (248)
T 3tfw_A 47 VAANQGQFLALLVRLT---QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123 (248)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred cCHHHHHHHHHHHhhc---CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3466666555544333 5789999999865554 333344 678999999875432 22 1 233333
Q ss_pred CCCCCCchHhhc--ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 157 YNQPQDLPLELK--HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 157 yn~P~~lp~~lk--~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..+ +...+. ++||+|++|.+... ...+-..+..++++ ++.||+.
T Consensus 124 ~~~---~l~~~~~~~~fD~V~~d~~~~~---~~~~l~~~~~~Lkp-GG~lv~~ 169 (248)
T 3tfw_A 124 ALQ---SLESLGECPAFDLIFIDADKPN---NPHYLRWALRYSRP-GTLIIGD 169 (248)
T ss_dssp HHH---HHHTCCSCCCCSEEEECSCGGG---HHHHHHHHHHTCCT-TCEEEEE
T ss_pred HHH---HHHhcCCCCCeEEEEECCchHH---HHHHHHHHHHhcCC-CeEEEEe
Confidence 221 122222 38999999997433 23444555566776 4556653
No 69
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=88.78 E-value=0.42 Score=41.03 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=50.3
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-------------C--cceeecCCCCCCchHh-hccccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLE-LKHAFS 172 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-------------~--~FvfYDyn~P~~lp~~-lk~~fD 172 (209)
+..+|+-|||=+=.. .+.+..+..+++.+|+|...-... + +++.=|..+ ++.. -.++||
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~~~~~~fD 171 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA---FVRQTPDNTYD 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH---HHHSSCTTCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH---HHHhccCCcee
Confidence 568999999985433 344433456899999996432211 1 233333211 1211 146799
Q ss_pred EEEECCCCCCHHH--H--HHHHHHHHHhcCCCCCcEEEec
Q 028404 173 VVVVDPPYLSKEC--L--EKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 173 ~Vv~DPPFlseec--~--~K~A~Tik~L~k~~~~kiilcT 208 (209)
+||+|+|.-.... + ..+-..++.++++ ++.+++.+
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~ 210 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKP-DGICCNQG 210 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCC-CcEEEEec
Confidence 9999997643110 0 2334455566666 45666643
No 70
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=88.54 E-value=2 Score=34.20 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhhcC-CCCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccccCCcceeecCCCCCCc---hHhh
Q 028404 94 AVTAETVAQEAVSLCS-DSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDL---PLEL 167 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~-~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~l---p~~l 167 (209)
.+.+-.|.+.+.+..- .++.+|+=|||=+=. ..+.+. ..+++-+|+...-..-+-.|+.=|..++... ...+
T Consensus 7 ~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~ 84 (191)
T 3dou_A 7 SRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRAL 84 (191)
T ss_dssp SHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHh
Confidence 4556667666665421 257899999886333 334332 4578888887642211226778888775321 1223
Q ss_pred c----ccccEEEECCCCCCH-----------HHHHHHHHHHHHhcCCCCCcEEE
Q 028404 168 K----HAFSVVVVDPPYLSK-----------ECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 168 k----~~fD~Vv~DPPFlse-----------ec~~K~A~Tik~L~k~~~~kiil 206 (209)
. ++||+|++|||.-.. +.++.+...+..+++| ++++++
T Consensus 85 ~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp-GG~lv~ 137 (191)
T 3dou_A 85 REEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN-GGNVLL 137 (191)
T ss_dssp HHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEE
T ss_pred hcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEE
Confidence 3 589999999875321 1123334445566676 445554
No 71
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=88.51 E-value=0.78 Score=40.00 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=49.8
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccccCC---------------cceeecCCCCCCchHhhcccccE
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYGS---------------DFAFYDYNQPQDLPLELKHAFSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~g~---------------~FvfYDyn~P~~lp~~lk~~fD~ 173 (209)
...+|+-|||=+=+.. +.+..+..++..+|+|.+...... +++.-|.. +......++||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~---~~l~~~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF---EFLKNHKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH---HHHHHCTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHH---HHHHhcCCCceE
Confidence 5689999999865543 333335678999999975432211 11211211 011112468999
Q ss_pred EEECCCCC--CHHHH--HHHHHHHHHhcCCCCCcEEEec
Q 028404 174 VVVDPPYL--SKECL--EKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 174 Vv~DPPFl--seec~--~K~A~Tik~L~k~~~~kiilcT 208 (209)
||+|+|-- ...-+ ..+-+.++.++++ ++.|++-+
T Consensus 185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkp-gG~lv~~~ 222 (314)
T 2b2c_A 185 IITDSSDPVGPAESLFGQSYYELLRDALKE-DGILSSQG 222 (314)
T ss_dssp EEECCC-------------HHHHHHHHEEE-EEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHhhcCC-CeEEEEEC
Confidence 99999532 11111 2344455566666 45666644
No 72
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=88.29 E-value=0.077 Score=42.65 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccc--------ccccC--C--cceeecCCCC
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR--------FEQYG--S--DFAFYDYNQP 160 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~R--------F~~~g--~--~FvfYDyn~P 160 (209)
..+..|+..+.... ++.+|+=|||=+=... |.+. +.+++-+|++.. +...| . +|+.=|..+
T Consensus 64 ~~~~~l~~~~~~~~--~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~- 138 (241)
T 3gdh_A 64 KIAEHIAGRVSQSF--KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL- 138 (241)
T ss_dssp HHHHHHHHHHHHHS--CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-
T ss_pred HHHHHHHHHhhhcc--CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-
Confidence 34667777766553 5789999999864443 3332 368999999874 22222 1 344444432
Q ss_pred CCchHhhcccccEEEECCCCCCHHH
Q 028404 161 QDLPLELKHAFSVVVVDPPYLSKEC 185 (209)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlseec 185 (209)
++ ..++||+|++||||....-
T Consensus 139 --~~--~~~~~D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 139 --LA--SFLKADVVFLSPPWGGPDY 159 (241)
T ss_dssp --HG--GGCCCSEEEECCCCSSGGG
T ss_pred --hc--ccCCCCEEEECCCcCCcch
Confidence 12 2468999999999987553
No 73
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=88.29 E-value=0.98 Score=35.95 Aligned_cols=109 Identities=16% Similarity=0.033 Sum_probs=63.3
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhC-CCCCceEEeeccccccc--------C--C--cceee
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIR-PEVSPKILEYDMRFEQY--------G--S--DFAFY 155 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~-~~~~~~LLE~D~RF~~~--------g--~--~FvfY 155 (209)
.-++.+...|...+... +..+|+=|||=+=+..+ .+.. ++.+++.+|++...... | + +|+.=
T Consensus 41 ~~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 117 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG 117 (221)
T ss_dssp GCCHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC
Confidence 34667777776666544 56899999997555433 3322 36689999998754322 2 1 23333
Q ss_pred cCCCCCCchHhhc-----ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 156 DYNQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 156 Dyn~P~~lp~~lk-----~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|..+ +...+. ++||+|++|.+...-.-..++...+ .++++ ++.|++.
T Consensus 118 d~~~---~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkp-gG~lv~~ 169 (221)
T 3u81_A 118 ASQD---LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRK-GTVLLAD 169 (221)
T ss_dssp CHHH---HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCT-TCEEEES
T ss_pred CHHH---HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCC-CeEEEEe
Confidence 3321 112233 6899999999776543223334444 55666 4556553
No 74
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=87.99 E-value=0.65 Score=39.53 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=29.0
Q ss_pred cccEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 170 AFSVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 170 ~fD~Vv~DPPFls----------eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.-++|.+||||.. ++=...+++.++.|.+. +.|+|||
T Consensus 164 ~~~fvY~DPPY~~~~~~Y~~~f~~~d~~~L~~~l~~l~~~-g~~~~lS 210 (259)
T 1yf3_A 164 DGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDR-GIKFGLS 210 (259)
T ss_dssp TTEEEEECCCCTTSCCGGGGGCCHHHHHHHHHHHHHHHTT-TCEEEEE
T ss_pred CCeEEEECCCCCCccchhccCCCHHHHHHHHHHHHHHhhC-CCEEEEE
Confidence 3579999999974 44468999999999764 5688886
No 75
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=87.98 E-value=0.58 Score=37.76 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=60.1
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccc--------ccC--C--c
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFE--------QYG--S--D 151 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~--------~~g--~--~ 151 (209)
..|.+|..... .++..+ .. .++.+|+=+||=+=.. .+.+. .|..+++.+|++.... .+| + +
T Consensus 73 ~~~~~~~~~~~-~i~~~~-~~--~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~ 148 (255)
T 3mb5_A 73 GPQIVHPKDAA-LIVAYA-GI--SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVT 148 (255)
T ss_dssp CSCCCCHHHHH-HHHHHT-TC--CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEE
T ss_pred ccccccHhHHH-HHHHhh-CC--CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceE
Confidence 44666755443 333332 22 1578999999875443 33343 5677899999986432 222 1 3
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|+.-|..++ ++ .++||+|++|||-.. .+-..+..++++ +++|++.
T Consensus 149 ~~~~d~~~~--~~---~~~~D~v~~~~~~~~-----~~l~~~~~~L~~-gG~l~~~ 193 (255)
T 3mb5_A 149 IKLKDIYEG--IE---EENVDHVILDLPQPE-----RVVEHAAKALKP-GGFFVAY 193 (255)
T ss_dssp EECSCGGGC--CC---CCSEEEEEECSSCGG-----GGHHHHHHHEEE-EEEEEEE
T ss_pred EEECchhhc--cC---CCCcCEEEECCCCHH-----HHHHHHHHHcCC-CCEEEEE
Confidence 444455443 22 357999999999542 223334445555 3466553
No 76
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=87.97 E-value=2 Score=37.71 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCchH
Q 028404 97 AETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDLPL 165 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~lp~ 165 (209)
.+.+.+.+.+.+...+.+|+=++|=+=...+.-.....+++-+|++..--. .| + +|+.=|.. ++..
T Consensus 199 ~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~---~~~~ 275 (369)
T 3bt7_A 199 NIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE---EFTQ 275 (369)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSH---HHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHH---HHHH
Confidence 367777777766423578988888755544421112247888888874321 12 1 23332321 1222
Q ss_pred hhc---------------ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 166 ELK---------------HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 166 ~lk---------------~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+. ++||+||+|||+.+-. ..+++.|.++ ++|+.+
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~-----~~~~~~l~~~--g~ivyv 325 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD-----SETEKMVQAY--PRILYI 325 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCC-----HHHHHHHTTS--SEEEEE
T ss_pred HHhhccccccccccccccCCCCEEEECcCccccH-----HHHHHHHhCC--CEEEEE
Confidence 221 2799999999997421 2345566543 466654
No 77
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=87.96 E-value=0.22 Score=39.65 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=49.1
Q ss_pred CCCeEEEEeCchHHHHHH--hhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk--~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|+|=+=...+. .. ...+++-+|++...-. .+ . +|+.-|..+. ++ ...++||+|++|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~--~~-~~~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF--LA-QKGTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH--HS-SCCCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH--Hh-hcCCCCCEEEEC
Confidence 457888888875444332 21 2247899999865422 11 1 2333332210 01 123579999999
Q ss_pred CCCCCHHHHHHHHHHHHH--hcCCCCCcEEEec
Q 028404 178 PPYLSKECLEKVSETVSF--LARPGDSKLLLLT 208 (209)
Q Consensus 178 PPFlseec~~K~A~Tik~--L~k~~~~kiilcT 208 (209)
|||.... ...+...+.. ++++ ++.|++++
T Consensus 130 ~p~~~~~-~~~~l~~l~~~~~L~p-gG~l~i~~ 160 (202)
T 2fpo_A 130 PPFRRGL-LEETINLLEDNGWLAD-EALIYVES 160 (202)
T ss_dssp CSSSTTT-HHHHHHHHHHTTCEEE-EEEEEEEE
T ss_pred CCCCCCc-HHHHHHHHHhcCccCC-CcEEEEEE
Confidence 9987433 2333333332 2555 45666654
No 78
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=87.68 E-value=5.2 Score=32.93 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=61.4
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCC-CCCceEEeeccccccc--------C--C--cceeec
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRP-EVSPKILEYDMRFEQY--------G--S--DFAFYD 156 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~-~~~~~LLE~D~RF~~~--------g--~--~FvfYD 156 (209)
.+..+...|...+ ... +..+|+=|||=+=|..+ .+..| +.+++.+|++...... | + +|+.=|
T Consensus 63 ~~~~~~~ll~~l~-~~~--~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
T 1sui_A 63 TSADEGQFLSMLL-KLI--NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP 139 (247)
T ss_dssp CCHHHHHHHHHHH-HHT--TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHH-Hhh--CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 4666666665544 432 56899999998766543 23334 6789999999865432 1 1 122222
Q ss_pred CCCCCCchHhh------cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 157 YNQPQDLPLEL------KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 157 yn~P~~lp~~l------k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
.. ++...+ .++||+|++|.+.... ..+-..+..++++ ++.|++
T Consensus 140 a~---~~l~~l~~~~~~~~~fD~V~~d~~~~~~---~~~l~~~~~~Lkp-GG~lv~ 188 (247)
T 1sui_A 140 AL---PVLDEMIKDEKNHGSYDFIFVDADKDNY---LNYHKRLIDLVKV-GGVIGY 188 (247)
T ss_dssp HH---HHHHHHHHSGGGTTCBSEEEECSCSTTH---HHHHHHHHHHBCT-TCCEEE
T ss_pred HH---HHHHHHHhccCCCCCEEEEEEcCchHHH---HHHHHHHHHhCCC-CeEEEE
Confidence 11 121223 4689999999875432 3444445556676 455665
No 79
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=87.30 E-value=2.1 Score=34.56 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc-----CC-cceeecCCCCCCchHh
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-----GS-DFAFYDYNQPQDLPLE 166 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~-----g~-~FvfYDyn~P~~lp~~ 166 (209)
..+..+++.+..... ++.+|+=|||=+=... |.+. ..+++.+|++...... +. .|+.-|.... |.
T Consensus 35 ~~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~---~~- 107 (263)
T 3pfg_A 35 REAADLAALVRRHSP-KAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDF---SL- 107 (263)
T ss_dssp HHHHHHHHHHHHHCT-TCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTC---CC-
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHC---Cc-
Confidence 345667777766654 5689999999854443 3332 3578999998754322 11 5666666542 21
Q ss_pred hcccccEEEECC-CC--C-CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 167 LKHAFSVVVVDP-PY--L-SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 167 lk~~fD~Vv~DP-PF--l-seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.++||+|++-. .+ + +.+-+.++-..+..++++ ++++|+.
T Consensus 108 -~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~i~ 150 (263)
T 3pfg_A 108 -GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP-DGVVVVE 150 (263)
T ss_dssp -SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEE-EEEEEEC
T ss_pred -cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCC-CcEEEEE
Confidence 57899999987 43 2 334455666667777777 5577764
No 80
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=87.12 E-value=2.1 Score=31.83 Aligned_cols=86 Identities=12% Similarity=0.053 Sum_probs=51.2
Q ss_pred CCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++.+|+=|||=+=...+.-..+..+++.+|++..... .| + +|+.-|..+| ++. ++||+|++++|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~---~~~D~i~~~~~ 109 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV--LDK---LEFNKAFIGGT 109 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH--GGG---CCCSEEEECSC
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc--ccC---CCCcEEEECCc
Confidence 5679999999865443322126678999999874432 22 1 3333343322 222 58999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 180 YLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 180 Flseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.. ...+-..++.+ + ++++++++
T Consensus 110 -~~---~~~~l~~~~~~--~-gG~l~~~~ 131 (183)
T 2yxd_A 110 -KN---IEKIIEILDKK--K-INHIVANT 131 (183)
T ss_dssp -SC---HHHHHHHHHHT--T-CCEEEEEE
T ss_pred -cc---HHHHHHHHhhC--C-CCEEEEEe
Confidence 22 34455555555 4 55777654
No 81
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=86.98 E-value=1.8 Score=34.69 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=57.4
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cCC-cceeecCCCCCC-chHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YGS-DFAFYDYNQPQD-LPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g~-~FvfYDyn~P~~-lp~~lk~~fD~Vv~DP 178 (209)
++.+|+=|||=+=.. .|.+..+..+++-+|++.+.-. ... .|+.-|...|.. ++ +.++||+|+.|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~D~v~~~~ 151 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN--IVEKVDVIYEDV 151 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT--TSCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc--cCccEEEEEEec
Confidence 577999999975433 3444445568999999974321 111 455667776543 22 236899999998
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 179 PYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 179 PFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
|... +...+...+..++++ ++.+++
T Consensus 152 ~~~~--~~~~~l~~~~~~Lkp-gG~l~i 176 (230)
T 1fbn_A 152 AQPN--QAEILIKNAKWFLKK-GGYGMI 176 (230)
T ss_dssp CSTT--HHHHHHHHHHHHEEE-EEEEEE
T ss_pred CChh--HHHHHHHHHHHhCCC-CcEEEE
Confidence 7654 335555566666676 456666
No 82
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=86.96 E-value=3.8 Score=37.14 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=60.3
Q ss_pred cccc-ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------CC--cceee
Q 028404 89 QFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------GS--DFAFY 155 (209)
Q Consensus 89 QFWY-Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g~--~FvfY 155 (209)
-||- .....+.|.+.+.+ .. ++.+|+=++|=+=... |.+. ..+++-+|++..--.. |- +|+.=
T Consensus 269 ~F~q~n~~~~e~l~~~~~~-~~-~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~ 344 (425)
T 2jjq_A 269 SFFQTNSYQAVNLVRKVSE-LV-EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVA 344 (425)
T ss_dssp SCCCSBHHHHHHHHHHHHH-HC-CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccccCHHHHHHHHHHhhc-cC-CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 4555 33445666666666 33 6789999988754443 3332 3578999998643221 21 34444
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|..+- ++. +||+||+|||+.+-. .++...++.| ++ ++-|+++
T Consensus 345 d~~~~--~~~----~fD~Vv~dPPr~g~~--~~~~~~l~~l-~p-~givyvs 386 (425)
T 2jjq_A 345 SDREV--SVK----GFDTVIVDPPRAGLH--PRLVKRLNRE-KP-GVIVYVS 386 (425)
T ss_dssp CTTTC--CCT----TCSEEEECCCTTCSC--HHHHHHHHHH-CC-SEEEEEE
T ss_pred ChHHc--Ccc----CCCEEEEcCCccchH--HHHHHHHHhc-CC-CcEEEEE
Confidence 44332 222 799999999986532 3455566554 44 2334443
No 83
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=86.61 E-value=1 Score=37.76 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=56.2
Q ss_pred cccccccChH-HHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC-C--c
Q 028404 86 RLSQFWYDAV-TAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-S--D 151 (209)
Q Consensus 86 qlSQFWYSd~-Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~ 151 (209)
...+||++.. ..+.+. .+ .... ++.+|+=++|=+=.. .+.+..+..+++-+|++..-- ..| . .
T Consensus 96 ~~~~~f~~~~~~~e~~~-~~-~~~~-~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~ 172 (272)
T 3a27_A 96 DVAKIMWSQGNIEERKR-MA-FISN-ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI 172 (272)
T ss_dssp ETTTSCCCGGGHHHHHH-HH-TSCC-TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEE
T ss_pred echhEEECCCchHHHHH-HH-HhcC-CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEE
Confidence 3456655553 333332 22 2223 577888887763222 233333455899999986322 111 1 2
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
|+.=|..+. +. .++||+||+|||+...+ -+..+++.| ++ ++.|++
T Consensus 173 ~~~~d~~~~---~~--~~~~D~Vi~d~p~~~~~---~l~~~~~~L-kp-gG~l~~ 217 (272)
T 3a27_A 173 PILADNRDV---EL--KDVADRVIMGYVHKTHK---FLDKTFEFL-KD-RGVIHY 217 (272)
T ss_dssp EEESCGGGC---CC--TTCEEEEEECCCSSGGG---GHHHHHHHE-EE-EEEEEE
T ss_pred EEECChHHc---Cc--cCCceEEEECCcccHHH---HHHHHHHHc-CC-CCEEEE
Confidence 333333221 11 45799999999995443 344445555 44 334443
No 84
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=86.54 E-value=3 Score=34.30 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=62.6
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCC-CCCceEEeecccccccC----------C--ccee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRP-EVSPKILEYDMRFEQYG----------S--DFAF 154 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~-~~~~~LLE~D~RF~~~g----------~--~Fvf 154 (209)
+-.+..+...|...+... +..+|+=|||=+=+..+ .+..+ +.+++.+|++....... + +|+.
T Consensus 42 ~~i~~~~~~~l~~l~~~~---~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~ 118 (242)
T 3r3h_A 42 MQVAPEQAQFMQMLIRLT---RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL 118 (242)
T ss_dssp TSCCHHHHHHHHHHHHHH---TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE
T ss_pred CccCHHHHHHHHHHHhhc---CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 446777777777665544 56899999997555433 33233 67899999998654332 1 2222
Q ss_pred ecCCCCCCchHhh-----cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 155 YDYNQPQDLPLEL-----KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 155 YDyn~P~~lp~~l-----k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
=|.. ++...+ .++||+|++|.+.... ..+-+.+..++++ ++.|++
T Consensus 119 gda~---~~l~~~~~~~~~~~fD~V~~d~~~~~~---~~~l~~~~~~Lkp-GG~lv~ 168 (242)
T 3r3h_A 119 GPAL---DTLHSLLNEGGEHQFDFIFIDADKTNY---LNYYELALKLVTP-KGLIAI 168 (242)
T ss_dssp SCHH---HHHHHHHHHHCSSCEEEEEEESCGGGH---HHHHHHHHHHEEE-EEEEEE
T ss_pred cCHH---HHHHHHhhccCCCCEeEEEEcCChHHh---HHHHHHHHHhcCC-CeEEEE
Confidence 2321 222333 4789999999984322 3333444455565 344554
No 85
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=86.38 E-value=0.99 Score=40.64 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 134 VSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 134 ~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
.+++-+|+|.+--. .| + +|..-|..+- + ...+||+||+||||+.
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l---~--~~~~fD~Iv~NPPYG~ 312 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDF---K--TNKINGVLISNPPYGE 312 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGC---C--CCCCSCEEEECCCCTT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHC---C--ccCCcCEEEECCchhh
Confidence 46888899875422 12 1 3555554431 1 1247999999999973
No 86
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=86.33 E-value=0.63 Score=36.31 Aligned_cols=108 Identities=13% Similarity=0.004 Sum_probs=65.5
Q ss_pred ccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccc--------cccC-C--c
Q 028404 85 WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG-S--D 151 (209)
Q Consensus 85 wqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF--------~~~g-~--~ 151 (209)
+...|+|....+...+.+.+.-. ++.+|+=|||=+=+.. |.+. ..+++.+|++... ..+| . +
T Consensus 54 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~ 128 (210)
T 3lbf_A 54 IGQGQTISQPYMVARMTELLELT---PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVS 128 (210)
T ss_dssp CTTSCEECCHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEE
T ss_pred cCCCCEeCCHHHHHHHHHhcCCC---CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceE
Confidence 45568888888888777765322 6789999999865543 3333 4689999998743 3222 1 3
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|+.-|..+. ++. .++||+|+++.++-.-. ..+..++++ +++|++..
T Consensus 129 ~~~~d~~~~--~~~--~~~~D~i~~~~~~~~~~------~~~~~~L~p-gG~lv~~~ 174 (210)
T 3lbf_A 129 TRHGDGWQG--WQA--RAPFDAIIVTAAPPEIP------TALMTQLDE-GGILVLPV 174 (210)
T ss_dssp EEESCGGGC--CGG--GCCEEEEEESSBCSSCC------THHHHTEEE-EEEEEEEE
T ss_pred EEECCcccC--Ccc--CCCccEEEEccchhhhh------HHHHHhccc-CcEEEEEE
Confidence 444454432 121 46899999985543211 124455666 45777654
No 87
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=86.16 E-value=1.2 Score=35.77 Aligned_cols=112 Identities=10% Similarity=0.066 Sum_probs=64.3
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC-CCCceEEeeccccccc--------C--C--c
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDMRFEQY--------G--S--D 151 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~-~~~~~LLE~D~RF~~~--------g--~--~ 151 (209)
..|.-.+..+...|...+... ++.+|+=|||=+=+.. |.+..+ ..+++.+|++...... | . .
T Consensus 39 ~~~~~~~~~~~~~l~~l~~~~---~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 115 (239)
T 2hnk_A 39 QANMQISPEEGQFLNILTKIS---GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIF 115 (239)
T ss_dssp --CCSCCHHHHHHHHHHHHHH---TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEE
T ss_pred CcccccCHHHHHHHHHHHHhh---CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEE
Confidence 345667788888877766443 5789999999865543 333344 5789999999754322 2 1 2
Q ss_pred ceeecCCCCCCchHhh--------------c-ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 152 FAFYDYNQPQDLPLEL--------------K-HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 152 FvfYDyn~P~~lp~~l--------------k-~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|+.-|..+ .+|... . ++||+|++|... +. ...+-..+..++++ ++.|++.
T Consensus 116 ~~~~d~~~--~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~--~~-~~~~l~~~~~~L~p-gG~lv~~ 180 (239)
T 2hnk_A 116 LKLGSALE--TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK--EN-YPNYYPLILKLLKP-GGLLIAD 180 (239)
T ss_dssp EEESCHHH--HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG--GG-HHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEECCHHH--HHHHHHhhcccccccccccCCCCCcCEEEEeCCH--HH-HHHHHHHHHHHcCC-CeEEEEE
Confidence 22222211 122111 1 679999999653 22 23444555556666 4566664
No 88
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=86.04 E-value=0.53 Score=37.66 Aligned_cols=120 Identities=8% Similarity=-0.020 Sum_probs=71.0
Q ss_pred ccccccccccChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccccc-----CC-cce
Q 028404 83 EDWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY-----GS-DFA 153 (209)
Q Consensus 83 EDwqlSQFWYSd~Ta~~La~~l~~~a~-~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~-----g~-~Fv 153 (209)
++|.-..|.-........+..+++... .++.+|+=|||=+=. ..|.+..|..+++.+|++...-.. +. +|+
T Consensus 4 ~~W~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 83 (259)
T 2p35_A 4 MAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFG 83 (259)
T ss_dssp ----CGGGBCCCCGGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEE
Confidence 457766666554445555556665543 256799999997533 344444567789999998754322 11 566
Q ss_pred eecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 154 FYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.-|... +| ..++||+|++-..+-.-.-..++-..+..++++ +++|++.+
T Consensus 84 ~~d~~~---~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 132 (259)
T 2p35_A 84 KADLAT---WK--PAQKADLLYANAVFQWVPDHLAVLSQLMDQLES-GGVLAVQM 132 (259)
T ss_dssp ECCTTT---CC--CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEE-EEEEEEEE
T ss_pred ECChhh---cC--ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCC-CeEEEEEe
Confidence 666654 23 246899999876654432235555556666676 55777654
No 89
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=86.04 E-value=0.52 Score=39.90 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=50.5
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-------------C--cceeecCCCCCCchHhhcccccE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLELKHAFSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-------------~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (209)
+..+|+-|||=+=.. .+.+..+..++..+|+|...-... + +++.=|..+- + ....++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~--l-~~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH--I-AKSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH--H-HTCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH--H-hhCCCCeeE
Confidence 568999999985443 333323456899999997543221 1 2222222110 1 112468999
Q ss_pred EEECCCCC--------CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 174 VVVDPPYL--------SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 174 Vv~DPPFl--------seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
||+|+|.- +++.+ +.++.++++ ++.+++.+
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~----~~~~~~L~p-gG~lv~~~ 189 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFY----AGIAKALKE-DGIFVAQT 189 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHH----HHHHHHEEE-EEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHH----HHHHHhcCC-CcEEEEEc
Confidence 99999873 23333 334455555 44566554
No 90
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=85.94 E-value=0.69 Score=40.26 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=51.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-------------C--cceeecCCCCCCchHhhcccccE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLELKHAFSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-------------~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (209)
+..+|+-|||=+=.. .+.+..+..++..+|+|...-... + +++.=|..+ ......++||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~---~l~~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK---FLENVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH---HHHHCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH---HHhhcCCCceE
Confidence 568999999985443 344433567899999997433211 1 222222211 11122468999
Q ss_pred EEECC--CCCCHHHH--HHHHHHHHHhcCCCCCcEEEe
Q 028404 174 VVVDP--PYLSKECL--EKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 174 Vv~DP--PFlseec~--~K~A~Tik~L~k~~~~kiilc 207 (209)
||+|| |+...+-+ ..+-..++.++++ ++.+++.
T Consensus 193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 229 (321)
T 2pt6_A 193 IIVDSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQ 229 (321)
T ss_dssp EEEECCCSSSGGGGGSSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEECCcCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 99999 44321111 2344455566666 4456653
No 91
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=85.45 E-value=1.2 Score=40.07 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=28.0
Q ss_pred CCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 134 VSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 134 ~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
.+++-+|+|.+--. .| + +|..-|..+. + ...+||+||+||||+.+
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~---~--~~~~fD~Iv~NPPYg~r 320 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADF---Q--TEDEYGVVVANPPYGER 320 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGC---C--CCCCSCEEEECCCCCCS
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhC---C--CCCCCCEEEECCCCccc
Confidence 46888899875322 12 1 3555554332 1 12479999999999853
No 92
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=85.44 E-value=3.5 Score=33.48 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHhhcCCCCC---eEEEEeCchHHHHH--HhhC-CCCCceEEeeccccccc--------C---Ccceee
Q 028404 93 DAVTAETVAQEAVSLCSDSDS---RVACIACPTLYAYL--KKIR-PEVSPKILEYDMRFEQY--------G---SDFAFY 155 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~~~~~---rIaclstPSly~~L--k~~~-~~~~~~LLE~D~RF~~~--------g---~~FvfY 155 (209)
+..+...|...+ ... +.+ +|+=|||=+=|..+ .+.. ++.+++.+|++...... | ++..+.
T Consensus 38 ~~~~~~~l~~l~-~~~--~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~ 114 (221)
T 3dr5_A 38 DEMTGQLLTTLA-ATT--NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL 114 (221)
T ss_dssp CHHHHHHHHHHH-HHS--CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHH-Hhh--CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 566666555544 333 334 99999998666543 2223 36789999999865432 1 111111
Q ss_pred cCCCCCCchHhh-cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 156 DYNQPQDLPLEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 156 Dyn~P~~lp~~l-k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
-- ...++...+ .++||+|++|++.... ..+-+.+..++++ ++.|++
T Consensus 115 ~g-da~~~l~~~~~~~fD~V~~d~~~~~~---~~~l~~~~~~Lkp-GG~lv~ 161 (221)
T 3dr5_A 115 LS-RPLDVMSRLANDSYQLVFGQVSPMDL---KALVDAAWPLLRR-GGALVL 161 (221)
T ss_dssp CS-CHHHHGGGSCTTCEEEEEECCCTTTH---HHHHHHHHHHEEE-EEEEEE
T ss_pred Ec-CHHHHHHHhcCCCcCeEEEcCcHHHH---HHHHHHHHHHcCC-CcEEEE
Confidence 11 111222234 5789999999987654 2333444455565 344554
No 93
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=85.33 E-value=0.76 Score=39.32 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=49.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-------------CC--cceeecCCCCCCchHhhcccccE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-------------GS--DFAFYDYNQPQDLPLELKHAFSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-------------g~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (209)
...+|+-|||=+=.. .+.+..+..+++.+|+|...-.. .+ +++.=|.... + ....++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~--l-~~~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY--V-RKFKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH--G-GGCSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH--H-hhCCCCceE
Confidence 568999999985443 34443345789999999743221 11 2222222111 1 112467999
Q ss_pred EEECCCCCCHHH-----HHHHHHHHHHhcCCCCCcEEEecC
Q 028404 174 VVVDPPYLSKEC-----LEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 174 Vv~DPPFlseec-----~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
||+|||.-.... ...+-..++.++++ ++.+++.+|
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~ 206 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKE-DGVFSAETE 206 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEE-EEEEEEECC
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCC-CcEEEEEcc
Confidence 999997431100 02333445556666 456766543
No 94
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=85.24 E-value=0.8 Score=38.85 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=51.5
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccccC-------------C--cceeecCCCCCCchHhhcccccE
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLELKHAFSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~g-------------~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (209)
+..+|+-|||=+=. ..+.+..+..++..+|+|...-... + +++.=|..+ ......++||+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~---~l~~~~~~fD~ 154 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK---FLENVTNTYDV 154 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH---HHHHCCSCEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH---HHHhCCCCceE
Confidence 56899999987433 3344434567899999997543221 1 122222211 11122568999
Q ss_pred EEECCCCCC--HHHH--HHHHHHHHHhcCCCCCcEEEec
Q 028404 174 VVVDPPYLS--KECL--EKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 174 Vv~DPPFls--eec~--~K~A~Tik~L~k~~~~kiilcT 208 (209)
||+|+|... .+-+ ..+-+.++.++++ ++.+++.+
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEE-EEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEEC
Confidence 999986432 1111 2344455566666 44566543
No 95
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=85.21 E-value=2.1 Score=35.30 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------CCcceeecCCCCCCch
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------GSDFAFYDYNQPQDLP 164 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g~~FvfYDyn~P~~lp 164 (209)
.|.....+.+..... ++.+|+=|||=+=.. .+.+.. .+++.+|+|...-.. +-...++-- ++.
T Consensus 105 ~tt~~~~~~l~~~~~-~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~----d~~ 177 (254)
T 2nxc_A 105 ETTRLALKALARHLR-PGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEG----SLE 177 (254)
T ss_dssp HHHHHHHHHHHHHCC-TTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEES----CHH
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCcEEEEEC----Chh
Confidence 455555566655544 678999999975332 344433 389999999865322 111112111 122
Q ss_pred Hhh-cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 165 LEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 165 ~~l-k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..+ .++||+||+++++ +.+..+...+..++++ +++++++
T Consensus 178 ~~~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~Lkp-gG~lils 217 (254)
T 2nxc_A 178 AALPFGPFDLLVANLYA---ELHAALAPRYREALVP-GGRALLT 217 (254)
T ss_dssp HHGGGCCEEEEEEECCH---HHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred hcCcCCCCCEEEECCcH---HHHHHHHHHHHHHcCC-CCEEEEE
Confidence 223 4689999999864 3456777777777787 4567664
No 96
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=85.19 E-value=7.6 Score=29.69 Aligned_cols=112 Identities=6% Similarity=0.011 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhhc-CCCCCeEEEEeCchHH--HHHHhhCC--CCCceEEeecccccccC-CcceeecCCCCC------
Q 028404 94 AVTAETVAQEAVSLC-SDSDSRVACIACPTLY--AYLKKIRP--EVSPKILEYDMRFEQYG-SDFAFYDYNQPQ------ 161 (209)
Q Consensus 94 d~Ta~~La~~l~~~a-~~~~~rIaclstPSly--~~Lk~~~~--~~~~~LLE~D~RF~~~g-~~FvfYDyn~P~------ 161 (209)
.+.+-.|.+.+.+.. -.++.+|+=|||=+=. ..|.+..+ ..+++-+|+.... ... -.|+.-|..++.
T Consensus 4 ~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-~~~~v~~~~~d~~~~~~~~~~~ 82 (201)
T 2plw_A 4 SRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-PIPNVYFIQGEIGKDNMNNIKN 82 (201)
T ss_dssp STTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-CCTTCEEEECCTTTTSSCCC--
T ss_pred hHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-CCCCceEEEccccchhhhhhcc
Confidence 344555666554431 0156789999887533 34444445 4678889988732 121 146666665432
Q ss_pred --Cc------------hHhhc-ccccEEEECCCCCC-----HHHHH------HHHHHHHHhcCCCCCcEEEe
Q 028404 162 --DL------------PLELK-HAFSVVVVDPPYLS-----KECLE------KVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 162 --~l------------p~~lk-~~fD~Vv~DPPFls-----eec~~------K~A~Tik~L~k~~~~kiilc 207 (209)
.+ ...+. ++||+|++|+++-. .+... ++-..+..++++ ++++++.
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~ 153 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI-GGTYIVK 153 (201)
T ss_dssp ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEEE
Confidence 01 11133 58999999986532 22211 233445566676 4566653
No 97
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=85.17 E-value=3.2 Score=33.46 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCC---CCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCC
Q 028404 96 TAETVAQEAVSLCSD---SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYN 158 (209)
Q Consensus 96 Ta~~La~~l~~~a~~---~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn 158 (209)
....++..++..... ++.+|+=|||=+ +...|....+..+++.+|++..-- ..+ + +|+.-|..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 344455555544321 356899999985 333444433457899999986432 222 1 34544543
Q ss_pred CC--CCchHhhcccccEEEECCCCCCH
Q 028404 159 QP--QDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 159 ~P--~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
+. ..++..-.++||+||++|||...
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~ 153 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFAN 153 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred hhhhhhhhcccCCcccEEEECCCCccC
Confidence 21 01221001479999999999864
No 98
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=85.02 E-value=2.6 Score=33.29 Aligned_cols=106 Identities=9% Similarity=0.046 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcC----CCCCeEEEEeCchHH--HHHHhh-CCCCCceEEeeccc----ccc----cCC-cceeecCCCCC
Q 028404 98 ETVAQEAVSLCS----DSDSRVACIACPTLY--AYLKKI-RPEVSPKILEYDMR----FEQ----YGS-DFAFYDYNQPQ 161 (209)
Q Consensus 98 ~~La~~l~~~a~----~~~~rIaclstPSly--~~Lk~~-~~~~~~~LLE~D~R----F~~----~g~-~FvfYDyn~P~ 161 (209)
..++..+..... .++.+|+=+||=+=. ..|.+. .+..+++-+|++.. ... ... +|+.-|...+.
T Consensus 56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 135 (227)
T 1g8a_A 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE 135 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG
T ss_pred hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcc
Confidence 455555533211 257799999987533 234333 34568999999883 211 112 56666776642
Q ss_pred CchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 162 DLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 162 ~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+ ..+.++||+|++|+|.... ...+...+..++++ ++.|++.
T Consensus 136 ~~-~~~~~~~D~v~~~~~~~~~--~~~~l~~~~~~Lkp-gG~l~~~ 177 (227)
T 1g8a_A 136 EY-RALVPKVDVIFEDVAQPTQ--AKILIDNAEVYLKR-GGYGMIA 177 (227)
T ss_dssp GG-TTTCCCEEEEEECCCSTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred hh-hcccCCceEEEECCCCHhH--HHHHHHHHHHhcCC-CCEEEEE
Confidence 21 1234589999999994332 23424445555666 4566654
No 99
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=84.82 E-value=1.1 Score=39.15 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhh-CCCCCceEEeeccc--------ccccC-C--cceee
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMR--------FEQYG-S--DFAFY 155 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~R--------F~~~g-~--~FvfY 155 (209)
+||-.+-+..|+-.++... ++.+|+=+||=+=... |-.. .+...++-+|+|.. ...+| . +++.-
T Consensus 83 ~~~~Qd~~s~l~~~~l~~~--~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~ 160 (309)
T 2b9e_A 83 HLILQDRASCLPAMLLDPP--PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEE 160 (309)
T ss_dssp SEEECCTGGGHHHHHHCCC--TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred eEEEECHHHHHHHHHhCCC--CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4444444444544444442 5778987777633332 2222 24467899999863 22233 1 45555
Q ss_pred cCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
|..+....... .++||+|++|||+.+.
T Consensus 161 D~~~~~~~~~~-~~~fD~Vl~D~PcSg~ 187 (309)
T 2b9e_A 161 DFLAVSPSDPR-YHEVHYILLDPSCSGS 187 (309)
T ss_dssp CGGGSCTTCGG-GTTEEEEEECCCCCC-
T ss_pred ChHhcCccccc-cCCCCEEEEcCCcCCC
Confidence 65432110001 1479999999999543
No 100
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=84.78 E-value=1.2 Score=36.00 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCC-CCCceEEeeccccccc--------C--C--cceeecC
Q 028404 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRP-EVSPKILEYDMRFEQY--------G--S--DFAFYDY 157 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~-~~~~~LLE~D~RF~~~--------g--~--~FvfYDy 157 (209)
+..+...|...+... +..+|+=|||=+=|..+ .+..+ +.+++.+|++..+... | . +|+.=|.
T Consensus 57 ~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~ 133 (232)
T 3cbg_A 57 SPEQAQFLGLLISLT---GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133 (232)
T ss_dssp CHHHHHHHHHHHHHH---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHhc---CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 666666666544333 56799999998666543 33333 5689999999865432 2 1 1222121
Q ss_pred CCCCCchHhhc-----ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 158 NQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 158 n~P~~lp~~lk-----~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
. +....+. ++||+|++|.+. .. ...+-..+..++++ ++.|++
T Consensus 134 ~---~~l~~l~~~~~~~~fD~V~~d~~~--~~-~~~~l~~~~~~Lkp-gG~lv~ 180 (232)
T 3cbg_A 134 L---ATLEQLTQGKPLPEFDLIFIDADK--RN-YPRYYEIGLNLLRR-GGLMVI 180 (232)
T ss_dssp H---HHHHHHHTSSSCCCEEEEEECSCG--GG-HHHHHHHHHHTEEE-EEEEEE
T ss_pred H---HHHHHHHhcCCCCCcCEEEECCCH--HH-HHHHHHHHHHHcCC-CeEEEE
Confidence 1 1112231 689999999873 22 23334444455565 455665
No 101
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=84.54 E-value=7.2 Score=34.99 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C-cceeecCCC
Q 028404 94 AVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQ 159 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~-~FvfYDyn~ 159 (209)
..-.+.|++.+++... .++.+|+=++|=+=.. .|.+. ..+++-+|++...- ..| . +|+.=|..+
T Consensus 268 ~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 268 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 3345566666666543 2467899998874443 33332 45789999986321 122 1 466666655
Q ss_pred CCC-chHhhcccccEEEECCCCCCH
Q 028404 160 PQD-LPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 160 P~~-lp~~lk~~fD~Vv~DPPFlse 183 (209)
... +| .-.++||+||+|||+.+.
T Consensus 346 ~l~~~~-~~~~~fD~Vv~dPPr~g~ 369 (433)
T 1uwv_A 346 DVTKQP-WAKNGFDKVLLDPARAGA 369 (433)
T ss_dssp CCSSSG-GGTTCCSEEEECCCTTCC
T ss_pred Hhhhhh-hhcCCCCEEEECCCCccH
Confidence 321 11 123579999999999864
No 102
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=84.32 E-value=2.3 Score=33.52 Aligned_cols=92 Identities=10% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cccCC-cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++.+|+=|||=+=.. .+.+..|..+++.+|++... ...+. +|+.-|.... |. .++||+|++...
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---~~--~~~fD~v~~~~~ 118 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY---DF--EEKYDMVVSALS 118 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC---CC--CSCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc---CC--CCCceEEEEeCc
Confidence 578999999985433 45555677899999998743 22222 4666666542 21 178999999876
Q ss_pred CC--CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 180 YL--SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 180 Fl--seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+- ...-...+-..++.++++ ++++++++
T Consensus 119 l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 148 (234)
T 3dtn_A 119 IHHLEDEDKKELYKRSYSILKE-SGIFINAD 148 (234)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 54 332223455666667777 56777754
No 103
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=84.25 E-value=0.34 Score=37.56 Aligned_cols=105 Identities=12% Similarity=0.235 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc----C-CcceeecCCCCCCchHhhcc
Q 028404 97 AETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY----G-SDFAFYDYNQPQDLPLELKH 169 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~----g-~~FvfYDyn~P~~lp~~lk~ 169 (209)
...+.+.+... .+.+|+=|||=+=... |.+. +.+++.+|++...-.. + ..|+..|+......|....+
T Consensus 41 ~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (227)
T 3e8s_A 41 DQAILLAILGR---QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGK 115 (227)
T ss_dssp HHHHHHHHHHT---CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCC
T ss_pred cHHHHHHhhcC---CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCC
Confidence 34455555544 5689999999864443 3332 5589999998765432 1 24555554321111112235
Q ss_pred cccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 170 ~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+||+|++...+...+ ..++-..++.++++ +++|++.+
T Consensus 116 ~fD~v~~~~~l~~~~-~~~~l~~~~~~L~p-gG~l~~~~ 152 (227)
T 3e8s_A 116 DYDLICANFALLHQD-IIELLSAMRTLLVP-GGALVIQT 152 (227)
T ss_dssp CEEEEEEESCCCSSC-CHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CccEEEECchhhhhh-HHHHHHHHHHHhCC-CeEEEEEe
Confidence 699999988877333 45666667777777 55777754
No 104
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=83.99 E-value=2.3 Score=35.76 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=59.4
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccc----c----cCC-cceeecCCCCCCchHhhcccccEEEECC
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFE----Q----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~----~----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
++.+|+-|||=+=+. .|.+. .++.+++-+|++.+.- . ... .++.-|...|.. ...+.++||+|++|-
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~-~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQS-YKSVVENVDVLYVDI 154 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGG-TTTTCCCEEEEEECC
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchh-hhccccceEEEEecC
Confidence 688999999986443 23332 4566899999998541 1 112 566777776632 123456899999998
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 PYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 PFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|+... ...+...++.++|+ +++++++
T Consensus 155 a~~~~--~~il~~~~~~~Lkp-GG~lvis 180 (232)
T 3id6_C 155 AQPDQ--TDIAIYNAKFFLKV-NGDMLLV 180 (232)
T ss_dssp CCTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred CChhH--HHHHHHHHHHhCCC-CeEEEEE
Confidence 88433 23345556656777 5577654
No 105
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=83.90 E-value=1.2 Score=35.11 Aligned_cols=111 Identities=5% Similarity=-0.021 Sum_probs=65.1
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccccc--------C------
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFEQY--------G------ 149 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~~~--------g------ 149 (209)
..+++.+..+...+.+.+..... ++.+|+=|||=+=+. .|.+. .+..+++.+|++...... |
T Consensus 54 ~~~~~~~p~~~~~~l~~l~~~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~ 132 (226)
T 1i1n_A 54 FQATISAPHMHAYALELLFDQLH-EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS 132 (226)
T ss_dssp TTEEECCHHHHHHHHHHTTTTSC-TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHT
T ss_pred CCceecCHHHHHHHHHHHHhhCC-CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCC
Confidence 34556666667666666653333 678999999975444 23333 344689999998643221 1
Q ss_pred -C-cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 150 -S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 150 -~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
. +|+.-|...+ .+ -.++||+|+++.|+-.- ...+..++++ +++|++++|
T Consensus 133 ~~v~~~~~d~~~~--~~--~~~~fD~i~~~~~~~~~------~~~~~~~Lkp-gG~lv~~~~ 183 (226)
T 1i1n_A 133 GRVQLVVGDGRMG--YA--EEAPYDAIHVGAAAPVV------PQALIDQLKP-GGRLILPVG 183 (226)
T ss_dssp SSEEEEESCGGGC--CG--GGCCEEEEEECSBBSSC------CHHHHHTEEE-EEEEEEEES
T ss_pred CcEEEEECCcccC--cc--cCCCcCEEEECCchHHH------HHHHHHhcCC-CcEEEEEEe
Confidence 1 3444444322 11 14579999999987432 1234455666 457777653
No 106
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=83.82 E-value=1.1 Score=40.07 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCceEEeeccccccc--------C--C--cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 134 VSPKILEYDMRFEQY--------G--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 134 ~~~~LLE~D~RF~~~--------g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
.+++-.|+|.+--.. | + +|..=|+.+. + ...+||+||+||||+.+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l---~--~~~~~D~Iv~NPPyg~r 314 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQF---K--SEDEFGFIITNPPYGER 314 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGC---C--CSCBSCEEEECCCCCCS
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhc---C--cCCCCcEEEECCCCcCc
Confidence 468888888753221 2 1 3444454321 1 12579999999999853
No 107
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=83.69 E-value=1 Score=40.95 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=25.0
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY 148 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~ 148 (209)
+.++|+.||+=+-+.. +.+. +..++.+.|+|.+--..
T Consensus 188 ~pkrVL~IGgG~G~~arellk~-~~~~Vt~VEID~~vie~ 226 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDG 226 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHC-CCCEEEEEECCHHHHHH
Confidence 5689999998754432 2222 33689999999865443
No 108
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=83.34 E-value=1.2 Score=36.68 Aligned_cols=87 Identities=9% Similarity=0.091 Sum_probs=49.9
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
++.+|+-+||=+=.. .+.+. .|..+++.+|++.... .+| . +|+.-|..+. ++ .++||+|+
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~---~~~~D~V~ 186 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FD---EKDVDALF 186 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CS---CCSEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--cc---CCccCEEE
Confidence 577999999875333 33343 4567899999976432 222 1 2333343332 22 25799999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|||... .-+.. +..++++ +++|++.+
T Consensus 187 ~~~~~~~----~~l~~-~~~~L~p-gG~l~~~~ 213 (277)
T 1o54_A 187 LDVPDPW----NYIDK-CWEALKG-GGRFATVC 213 (277)
T ss_dssp ECCSCGG----GTHHH-HHHHEEE-EEEEEEEE
T ss_pred ECCcCHH----HHHHH-HHHHcCC-CCEEEEEe
Confidence 9999642 22233 3344555 45666654
No 109
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=82.46 E-value=12 Score=27.65 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhc--ccccEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELK--HAFSVV 174 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk--~~fD~V 174 (209)
++.+|+=+||=+=.. .+.+.. .+++.+|++.... .++ . +|+.-|.. ..+. ++||+|
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~------~~~~~~~~~D~v 104 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP------EALCKIPDIDIA 104 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH------HHHTTSCCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH------HhcccCCCCCEE
Confidence 578999999875333 333322 6899999986432 222 1 22222322 2222 479999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 175 VVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 175 v~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++++|+... ..+-..+..++++ ++++++.+
T Consensus 105 ~~~~~~~~~---~~~l~~~~~~l~~-gG~l~~~~ 134 (192)
T 1l3i_A 105 VVGGSGGEL---QEILRIIKDKLKP-GGRIIVTA 134 (192)
T ss_dssp EESCCTTCH---HHHHHHHHHTEEE-EEEEEEEE
T ss_pred EECCchHHH---HHHHHHHHHhcCC-CcEEEEEe
Confidence 999997543 4555556666666 45676643
No 110
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=82.44 E-value=1.8 Score=37.53 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=28.0
Q ss_pred ccccEEEECCCCCC----------------HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 169 HAFSVVVVDPPYLS----------------KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 169 ~~fD~Vv~DPPFls----------------eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..-|+|.+||||.. ++=...++..++.|.+. +.|+|++
T Consensus 186 ~~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~-g~~~~lS 239 (284)
T 2dpm_A 186 RTGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDT-GAYVMLS 239 (284)
T ss_dssp CTTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTT-TCEEEEE
T ss_pred CCCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 34579999999953 23356899999998764 5588876
No 111
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=82.19 E-value=2.6 Score=33.76 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=61.0
Q ss_pred cccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cccC--C-ccee
Q 028404 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG--S-DFAF 154 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~~g--~-~Fvf 154 (209)
.|+.....+...+.+.+. . . ++.+|+=|||=+=+. .|.+..+ .+++.+|++... ...| . +|+.
T Consensus 71 ~~~~~~~~~~~~~~~~l~-~-~-~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~ 146 (235)
T 1jg1_A 71 GQTVSAPHMVAIMLEIAN-L-K-PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVIL 146 (235)
T ss_dssp TCEECCHHHHHHHHHHHT-C-C-TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CceeccHHHHHHHHHhcC-C-C-CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 344445556666666552 2 2 577999999986444 3333334 689999998643 2222 1 3444
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
-|...+ ++. .+.||+||++.++-.-. ..+..++++ +++|++.+|
T Consensus 147 ~d~~~~--~~~--~~~fD~Ii~~~~~~~~~------~~~~~~L~p-gG~lvi~~~ 190 (235)
T 1jg1_A 147 GDGSKG--FPP--KAPYDVIIVTAGAPKIP------EPLIEQLKI-GGKLIIPVG 190 (235)
T ss_dssp SCGGGC--CGG--GCCEEEEEECSBBSSCC------HHHHHTEEE-EEEEEEEEC
T ss_pred CCcccC--CCC--CCCccEEEECCcHHHHH------HHHHHhcCC-CcEEEEEEe
Confidence 444222 332 23599999998764321 134445565 457877764
No 112
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=82.11 E-value=4.7 Score=30.68 Aligned_cols=113 Identities=12% Similarity=-0.028 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCC---------CCceEEeecccccccCCcce-eecCCCC
Q 028404 94 AVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPE---------VSPKILEYDMRFEQYGSDFA-FYDYNQP 160 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~---------~~~~LLE~D~RF~~~g~~Fv-fYDyn~P 160 (209)
.+.+..|.+....... .++.+|+=|||=+=+. .|.+..+. .+++.+|++.....-+-+|+ .-|...+
T Consensus 4 ~r~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 4 SRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDP 83 (196)
T ss_dssp STHHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSH
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCH
Confidence 3444455554443321 2578999999875443 34443332 57899998874321111455 4555432
Q ss_pred CCch----Hhhc-ccccEEEECCCCCC-----HHH------HHHHHHHHHHhcCCCCCcEEEec
Q 028404 161 QDLP----LELK-HAFSVVVVDPPYLS-----KEC------LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 161 ~~lp----~~lk-~~fD~Vv~DPPFls-----eec------~~K~A~Tik~L~k~~~~kiilcT 208 (209)
. .+ ..+. ++||+|++|+++-. .+- ..++...+..++++ ++++++.+
T Consensus 84 ~-~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~ 145 (196)
T 2nyu_A 84 R-TSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP-GGTFLCKT 145 (196)
T ss_dssp H-HHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred H-HHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence 1 11 1233 47999999986542 111 02444445556666 45677653
No 113
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=81.93 E-value=2.3 Score=36.63 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC--------------C--cceeecCCCCCCchHhhccccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG--------------S--DFAFYDYNQPQDLPLELKHAFS 172 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g--------------~--~FvfYDyn~P~~lp~~lk~~fD 172 (209)
...+|+-|||=+=.. .+.+..+..++..+|+|...-... + +++.=|..+ +.....++||
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~---~l~~~~~~fD 153 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA---YLERTEERYD 153 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH---HHHHCCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH---HHHhcCCCcc
Confidence 568999999985444 343433456899999997432211 1 222222211 1112356899
Q ss_pred EEEECCCCCC---H--HH--HHHHHHHHHHhcCCCCCcEEEec
Q 028404 173 VVVVDPPYLS---K--EC--LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 173 ~Vv~DPPFls---e--ec--~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+||+|+|.-. . +- ...+-+.++.++++ ++.+++.+
T Consensus 154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~ 195 (314)
T 1uir_A 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP-GGVMGMQT 195 (314)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE-EEEEEEEE
T ss_pred EEEECCCCcccccCcchhccHHHHHHHHHHhcCC-CcEEEEEc
Confidence 9999998743 1 00 13334455566666 45566543
No 114
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=81.78 E-value=1.5 Score=37.80 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=26.2
Q ss_pred cccEEEECCCCCC----------------HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 170 AFSVVVVDPPYLS----------------KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 170 ~fD~Vv~DPPFls----------------eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.-|+|.+||||.. ++=...+++.++.|.+. +.++|++
T Consensus 174 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~-~~~~~lS 226 (278)
T 2g1p_A 174 DSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVER-HIPVLIS 226 (278)
T ss_dssp TTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCeEEEE
Confidence 3479999999952 12356688888888754 4578876
No 115
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=81.57 E-value=2 Score=37.30 Aligned_cols=93 Identities=24% Similarity=0.224 Sum_probs=56.9
Q ss_pred Ccccccccc-cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C
Q 028404 81 VSEDWRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G 149 (209)
Q Consensus 81 ~~EDwqlSQ-FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g 149 (209)
+.-+..+.| |.-+...++.+++.+.-. ++.+|+=|||=+=+. .|.+. ..+++.+|+|.+.... +
T Consensus 22 ~~~~k~~GQnfL~d~~i~~~Iv~~l~~~---~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~ 96 (295)
T 3gru_A 22 FKPKKKLGQCFLIDKNFVNKAVESANLT---KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYN 96 (295)
T ss_dssp --------CCEECCHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCS
T ss_pred CCCccccCccccCCHHHHHHHHHhcCCC---CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCC
Confidence 445677888 777878888877776322 577999999985444 34443 4589999999987643 1
Q ss_pred C-cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 150 S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 150 ~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
. +++.=|..+- .++. ..||+||+.+||--
T Consensus 97 ~v~vi~gD~l~~-~~~~---~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 97 NIEIIWGDALKV-DLNK---LDFNKVVANLPYQI 126 (295)
T ss_dssp SEEEEESCTTTS-CGGG---SCCSEEEEECCGGG
T ss_pred CeEEEECchhhC-Cccc---CCccEEEEeCcccc
Confidence 1 4555555431 1332 36999999999964
No 116
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=81.39 E-value=2.3 Score=34.65 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=60.3
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHH--HhhCC-CCCceEEeeccccccc--------C--C--cceeec
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRP-EVSPKILEYDMRFEQY--------G--S--DFAFYD 156 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~L--k~~~~-~~~~~LLE~D~RF~~~--------g--~--~FvfYD 156 (209)
.+..+...|...+... +.++|+=|||=+=|..+ .+..| +.+++.+|++...... | + +|+.-|
T Consensus 54 ~~~~~~~~l~~l~~~~---~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 130 (237)
T 3c3y_A 54 TSPLAGQLMSFVLKLV---NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD 130 (237)
T ss_dssp CCHHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 4566666665554433 56899999997655532 23334 6789999999765432 2 1 122222
Q ss_pred CCCCCCchHhh------cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 157 YNQPQDLPLEL------KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 157 yn~P~~lp~~l------k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
.. ++...+ .++||+|++|.+-.. ...+-+.+..++++ ++.|++
T Consensus 131 a~---~~l~~l~~~~~~~~~fD~I~~d~~~~~---~~~~l~~~~~~L~p-GG~lv~ 179 (237)
T 3c3y_A 131 AM---LALDNLLQGQESEGSYDFGFVDADKPN---YIKYHERLMKLVKV-GGIVAY 179 (237)
T ss_dssp HH---HHHHHHHHSTTCTTCEEEEEECSCGGG---HHHHHHHHHHHEEE-EEEEEE
T ss_pred HH---HHHHHHHhccCCCCCcCEEEECCchHH---HHHHHHHHHHhcCC-CeEEEE
Confidence 21 122233 468999999986422 23444445556666 445655
No 117
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=81.19 E-value=5.2 Score=31.36 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccCC--cceeecCCCCCCchHh
Q 028404 99 TVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYGS--DFAFYDYNQPQDLPLE 166 (209)
Q Consensus 99 ~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g~--~FvfYDyn~P~~lp~~ 166 (209)
.+.+.+.+... ++.+|+=|||=+=.. .+.+. .+++.+|++.... ..+. +|+.-|... +|
T Consensus 22 ~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~-- 92 (243)
T 3d2l_A 22 EWVAWVLEQVE-PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE---LE-- 92 (243)
T ss_dssp HHHHHHHHHSC-TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG---CC--
T ss_pred HHHHHHHHHcC-CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh---cC--
Confidence 34445555544 568999999975333 33332 5789999986432 1221 455555432 11
Q ss_pred hcccccEEEECC-C--CC-CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 167 LKHAFSVVVVDP-P--YL-SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 167 lk~~fD~Vv~DP-P--Fl-seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+.++||+|++.+ . ++ +.+-...+-..+..++++ ++++|+.
T Consensus 93 ~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 136 (243)
T 3d2l_A 93 LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTD-GGKLLFD 136 (243)
T ss_dssp CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 236899999875 2 33 334445555666666776 4567764
No 118
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=81.12 E-value=13 Score=32.09 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=56.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCC-CchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQ-DLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~-~lp~~lk~~fD~Vv~ 176 (209)
+..+|+=|||=+=.. .|.+..|+.+++++|... |+...| + +|+..|+.++. .+| ++||+|++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----TGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----CCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----CCcCEEEE
Confidence 568999999875433 455557888999999842 333333 1 68888887753 344 57998887
Q ss_pred CCCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 177 DPPY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 177 DPPF--ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
==-+ .+ ++| .++-..++..++| +++||++
T Consensus 255 ~~vlh~~~~~~~-~~~l~~~~~~L~p-gG~l~i~ 286 (363)
T 3dp7_A 255 SQFLDCFSEEEV-ISILTRVAQSIGK-DSKVYIM 286 (363)
T ss_dssp ESCSTTSCHHHH-HHHHHHHHHHCCT-TCEEEEE
T ss_pred echhhhCCHHHH-HHHHHHHHHhcCC-CcEEEEE
Confidence 3222 13 455 3444445555676 5688774
No 119
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=80.83 E-value=7.1 Score=30.61 Aligned_cols=94 Identities=7% Similarity=0.034 Sum_probs=58.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC-C--cceeecCCCCCCchHhh-cccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLEL-KHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~ 176 (209)
++.+|+=|||=+=+. .+.+..|+.+++.+|++...- ..| . .|+.-|... ++..+ .++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD---LTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC---GGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH---HHhhcCCCCCCEEEE
Confidence 467899999885444 344456777899999985332 222 2 455566543 44434 467999999
Q ss_pred CCCCCCHH--------HHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKE--------CLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlsee--------c~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+|-.... ....+...+..++++ ++.|++.|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 156 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPE-NGEIHFKT 156 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCT-TCEEEEEE
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCC-CcEEEEEe
Confidence 98853100 113445556667777 55787766
No 120
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=80.64 E-value=2 Score=34.35 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=50.9
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccc--------cc-C-C--cceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFE--------QY-G-S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~--------~~-g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
++.+|+=+||=+=.. .+.+. .|..+++.+|++.... .+ | . +|+.-|..+. .++ .++||+|+
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~---~~~~D~v~ 171 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-ELE---EAAYDGVA 171 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-CCC---TTCEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-CCC---CCCcCEEE
Confidence 578999999874332 33333 4567899999986432 22 3 1 3555555432 122 25799999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|||-.. .+-..+..++++ ++++++.+
T Consensus 172 ~~~~~~~-----~~l~~~~~~L~~-gG~l~~~~ 198 (258)
T 2pwy_A 172 LDLMEPW-----KVLEKAALALKP-DRFLVAYL 198 (258)
T ss_dssp EESSCGG-----GGHHHHHHHEEE-EEEEEEEE
T ss_pred ECCcCHH-----HHHHHHHHhCCC-CCEEEEEe
Confidence 9998432 223334444555 45666543
No 121
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=80.58 E-value=12 Score=28.76 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCcccccCccccccccc-ccChHHHHHHHHHHHhhcCCCCCeEEEEeCch
Q 028404 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQF-WYDAVTAETVAQEAVSLCSDSDSRVACIACPT 122 (209)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~f~~~~~~~~~~~~~~~EDwqlSQF-WYSd~Ta~~La~~l~~~a~~~~~rIaclstPS 122 (209)
.|+.+..+.+..++....+..+. |++.-. ..++.-.+.+.+.+......++.+|+=|||=+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~ 76 (207)
T 1jsx_A 15 SLTDHQKNQLIAYVNMLHKWNKA------------------YNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGP 76 (207)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC------------------------------CHHHHHHHHHHHHGGGCCSSEEEEETCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhccc------------------ccccccCCHHHHHHHHHHhhhhhhhhcCCCeEEEECCCC
Confidence 58888999998888766543221 111110 01112233344443322100267999998874
Q ss_pred HHH--HHHhhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHH
Q 028404 123 LYA--YLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKV 189 (209)
Q Consensus 123 ly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~ 189 (209)
=+. .+....|..+++.+|++..... .+ . +|+.-|..... + .++||+|++.. +.. +..+
T Consensus 77 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~---~~~~D~i~~~~-~~~---~~~~ 147 (207)
T 1jsx_A 77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--S---EPPFDGVISRA-FAS---LNDM 147 (207)
T ss_dssp TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--C---CSCEEEEECSC-SSS---HHHH
T ss_pred CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC--c---cCCcCEEEEec-cCC---HHHH
Confidence 332 3444456779999999875422 22 1 34444554331 1 36799999864 211 3444
Q ss_pred HHHHHHhcCCCCCcEEEecC
Q 028404 190 SETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 190 A~Tik~L~k~~~~kiilcTG 209 (209)
...+..++++ ++.+++..|
T Consensus 148 l~~~~~~L~~-gG~l~~~~~ 166 (207)
T 1jsx_A 148 VSWCHHLPGE-QGRFYALKG 166 (207)
T ss_dssp HHHHTTSEEE-EEEEEEEES
T ss_pred HHHHHHhcCC-CcEEEEEeC
Confidence 5555555665 557777654
No 122
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=80.53 E-value=2.6 Score=33.20 Aligned_cols=111 Identities=11% Similarity=-0.024 Sum_probs=65.7
Q ss_pred cccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhC-----CCCCceEEeeccccc--------ccC---
Q 028404 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIR-----PEVSPKILEYDMRFE--------QYG--- 149 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~-----~~~~~~LLE~D~RF~--------~~g--- 149 (209)
.|......+...+.+.+..... ++.+|+=|||=+=+.. |.+.. +..+++.+|++.... ..+
T Consensus 58 ~~~~~~p~~~~~~~~~l~~~~~-~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 136 (227)
T 2pbf_A 58 GVTISAPHMHALSLKRLINVLK-PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL 136 (227)
T ss_dssp TEEECCHHHHHHHHHHHTTTSC-TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG
T ss_pred CCccCChHHHHHHHHHHHhhCC-CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc
Confidence 4566667777777777653333 6789999999865443 33332 456899999986432 222
Q ss_pred ---C--cceeecCCCCCCchH--hhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 150 ---S--DFAFYDYNQPQDLPL--ELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 150 ---~--~FvfYDyn~P~~lp~--~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
. +|+.-|.... ++. .-.++||+|++++++-.- -..+..++++ +++|++++
T Consensus 137 ~~~~~v~~~~~d~~~~--~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~Lkp-gG~lv~~~ 193 (227)
T 2pbf_A 137 LKIDNFKIIHKNIYQV--NEEEKKELGLFDAIHVGASASEL------PEILVDLLAE-NGKLIIPI 193 (227)
T ss_dssp GSSTTEEEEECCGGGC--CHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEE-EEEEEEEE
T ss_pred cccCCEEEEECChHhc--ccccCccCCCcCEEEECCchHHH------HHHHHHhcCC-CcEEEEEE
Confidence 1 3444444332 211 124679999999987532 1334455565 45777764
No 123
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=80.51 E-value=1.3 Score=35.21 Aligned_cols=110 Identities=8% Similarity=0.019 Sum_probs=66.1
Q ss_pred cccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC------CCCceEEeeccccccc-----------
Q 028404 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP------EVSPKILEYDMRFEQY----------- 148 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~------~~~~~LLE~D~RF~~~----------- 148 (209)
.|++....+...+.+.+..... ++.+|+=|||=+=+.. |.+..+ ..+++.+|++......
T Consensus 62 ~~~~~~p~~~~~~~~~l~~~~~-~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 140 (227)
T 1r18_A 62 GVTISAPHMHAFALEYLRDHLK-PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140 (227)
T ss_dssp TEEECCHHHHHHHHHHTTTTCC-TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHHHhhCC-CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc
Confidence 4666677777777777653333 6789999999865543 222211 2479999998643321
Q ss_pred ----CC-cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 149 ----GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 149 ----g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
.. +|+.-|...+ ++. .++||+|+++.++-.- -..+..++++ +++|++.+|
T Consensus 141 ~~~~~~v~~~~~d~~~~--~~~--~~~fD~I~~~~~~~~~------~~~~~~~Lkp-gG~lvi~~~ 195 (227)
T 1r18_A 141 MLDSGQLLIVEGDGRKG--YPP--NAPYNAIHVGAAAPDT------PTELINQLAS-GGRLIVPVG 195 (227)
T ss_dssp HHHHTSEEEEESCGGGC--CGG--GCSEEEEEECSCBSSC------CHHHHHTEEE-EEEEEEEES
T ss_pred ccCCCceEEEECCcccC--CCc--CCCccEEEECCchHHH------HHHHHHHhcC-CCEEEEEEe
Confidence 11 3444454433 332 3679999999887532 1334455565 557777654
No 124
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=80.39 E-value=1.8 Score=35.51 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC-C-cceeecCCCCCCchH
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG-S-DFAFYDYNQPQDLPL 165 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g-~-~FvfYDyn~P~~lp~ 165 (209)
..+.+.+... ++.+|+=|||=+=.. .|.+. +.+++.+|++...-. .| . +|+..|..... .
T Consensus 110 ~~~~~~~~~~---~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~ 181 (286)
T 3m70_A 110 GDVVDAAKII---SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN---I 181 (286)
T ss_dssp HHHHHHHHHS---CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC---C
T ss_pred HHHHHHhhcc---CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc---c
Confidence 4444544433 578999999975443 34332 458999999875332 22 1 56666665431 1
Q ss_pred hhcccccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 166 ELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 166 ~lk~~fD~Vv~DPPFl--seec~~K~A~Tik~L~k~~~~kiil 206 (209)
.++||+|++.++|- +.+-+.++-..++.++++ ++.+++
T Consensus 182 --~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i 221 (286)
T 3m70_A 182 --QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNV-GGYNLI 221 (286)
T ss_dssp --CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEE-EEEEEE
T ss_pred --cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCC-CcEEEE
Confidence 57899999998875 444455666777777777 456444
No 125
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=80.38 E-value=3.4 Score=31.69 Aligned_cols=109 Identities=7% Similarity=-0.056 Sum_probs=64.4
Q ss_pred cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchH---HHHHHhhCCCCCceEEeeccccc--------ccCC--cceeec
Q 028404 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTL---YAYLKKIRPEVSPKILEYDMRFE--------QYGS--DFAFYD 156 (209)
Q Consensus 90 FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSl---y~~Lk~~~~~~~~~LLE~D~RF~--------~~g~--~FvfYD 156 (209)
.+++......+++.+.... ++.+|+=|||=+= ...+.+ ++.+++.+|++.... ..+. +|+.-|
T Consensus 4 ~l~~~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d 79 (209)
T 2p8j_A 4 TIIRQPQLYRFLKYCNESN--LDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGD 79 (209)
T ss_dssp CCCSCTHHHHHHHHHHHSS--SCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECC
T ss_pred HhhhhhhHHHHHHHHhccC--CCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECc
Confidence 4455556666666665442 5789999988642 223333 456899999986432 1222 466666
Q ss_pred CCCCCCchHhhcccccEEEECCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 157 YNQPQDLPLELKHAFSVVVVDPPY--LSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPF--lseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.... .++ .++||+|++--.+ +..+-..++-..+..++++ ++++++.
T Consensus 80 ~~~~-~~~---~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 127 (209)
T 2p8j_A 80 IRKL-PFK---DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKP-GGLACIN 127 (209)
T ss_dssp TTSC-CSC---TTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred hhhC-CCC---CCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 6431 122 3679999986443 3334456666667777777 4566665
No 126
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=80.34 E-value=1.1 Score=38.69 Aligned_cols=93 Identities=17% Similarity=0.033 Sum_probs=49.2
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccccC-------------C--cceeecCCCCCCchHhhcccccE
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLELKHAFSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~g-------------~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (209)
+..+|+-|||=+=+.. +.+..+..++..+|+|....... + +++.=|..+ +.....++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~---~l~~~~~~fD~ 171 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE---FMKQNQDAFDV 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH---HHHTCSSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH---HHhhCCCCceE
Confidence 5689999999865443 33333457899999997543221 1 122222110 11112468999
Q ss_pred EEECCCCCCHHH----HHHHHHHHHHhcCCCCCcEEEe
Q 028404 174 VVVDPPYLSKEC----LEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 174 Vv~DPPFlseec----~~K~A~Tik~L~k~~~~kiilc 207 (209)
||+|+|.-.... ...+-+.++.++++ ++.|++-
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 208 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKE-DGVLCCQ 208 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEE-EEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCC-CeEEEEe
Confidence 999998632110 12233444555665 4456553
No 127
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=80.02 E-value=6.9 Score=32.33 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=57.5
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cccC----C--cceeecCCCCCCchHhhcccccEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG----S--DFAFYDYNQPQDLPLELKHAFSVV 174 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~~g----~--~FvfYDyn~P~~lp~~lk~~fD~V 174 (209)
...+|+=|||=+=.. .|.+. +.+++.+|++... ...+ . +|+.-|..+ +| +.++||+|
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---~~--~~~~fD~v 154 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA---FA--LDKRFGTV 154 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB---CC--CSCCEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc---CC--cCCCcCEE
Confidence 456999999985443 34332 4689999998633 2222 1 466667654 22 15789988
Q ss_pred EEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 175 VVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 175 v~D---PPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|+- -.++..+.+.++-..+..++++ +++||+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 190 (299)
T 3g2m_A 155 VISSGSINELDEADRRGLYASVREHLEP-GGKFLLSL 190 (299)
T ss_dssp EECHHHHTTSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EECCcccccCCHHHHHHHHHHHHHHcCC-CcEEEEEe
Confidence 865 3455655556777777777887 55777754
No 128
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=79.96 E-value=6.1 Score=31.95 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=57.1
Q ss_pred CCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccc--------ccCC----cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFE--------QYGS----DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~--------~~g~----~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+ +-..+.+. +..+++.+|++.... ..+. +|+.-|.... .++ ..++||+|++
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~~fD~v~~ 139 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-HMD--LGKEFDVISS 139 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-CCC--CSSCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-ccC--CCCCcCEEEE
Confidence 678999999864 22334442 344799999986432 2221 4566666542 111 2468999998
Q ss_pred CCCC----CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPY----LSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPF----lseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.-.+ .+.+-...+-..+..++++ +++||+.+
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 174 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRP-GGYFIMTV 174 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 8665 4455556666667777777 55777654
No 129
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=79.80 E-value=2.6 Score=32.22 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccc--------ccccC--C--cceeecCCCCCCc
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMR--------FEQYG--S--DFAFYDYNQPQDL 163 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~R--------F~~~g--~--~FvfYDyn~P~~l 163 (209)
..+++.+.+.......+|+=|||=+=.. .|.+. ++.+++.+|++.. +...+ + +|+.-|..+. .+
T Consensus 30 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~ 107 (219)
T 3dlc_A 30 PIIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-PI 107 (219)
T ss_dssp HHHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-SS
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-CC
Confidence 3455555554432334999999875333 34443 5668999999863 32222 1 4666666541 12
Q ss_pred hHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+ .++||+|++...+-.-+-...+-..+..++++ +++++++
T Consensus 108 ~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~~~ 147 (219)
T 3dlc_A 108 E---DNYADLIVSRGSVFFWEDVATAFREIYRILKS-GGKTYIG 147 (219)
T ss_dssp C---TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE-EEEEEEE
T ss_pred C---cccccEEEECchHhhccCHHHHHHHHHHhCCC-CCEEEEE
Confidence 2 36899999987654322234555666666776 5577775
No 130
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=79.69 E-value=13 Score=29.25 Aligned_cols=86 Identities=10% Similarity=-0.077 Sum_probs=50.9
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccc--------cC-C---cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ--------YG-S---DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~--------~g-~---~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=+.. +.+. ..+++.+|++..... +| . +|+.-|..+. ++. ...||+|++
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~--~~~~D~v~~ 128 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA--LAD--LPLPEAVFI 128 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG--GTT--SCCCSEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh--ccc--CCCCCEEEE
Confidence 5789999998754443 3332 568999999875432 22 1 3444444331 211 146999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++.+ .. . +...+..++++ +++|++.+
T Consensus 129 ~~~~-~~---~-~l~~~~~~Lkp-gG~lv~~~ 154 (204)
T 3njr_A 129 GGGG-SQ---A-LYDRLWEWLAP-GTRIVANA 154 (204)
T ss_dssp CSCC-CH---H-HHHHHHHHSCT-TCEEEEEE
T ss_pred CCcc-cH---H-HHHHHHHhcCC-CcEEEEEe
Confidence 9955 22 2 44555556676 45777654
No 131
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=79.65 E-value=2.7 Score=36.93 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=51.5
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-------------CC--cceeecCCCCCCchHhh-ccccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-------------GS--DFAFYDYNQPQDLPLEL-KHAFS 172 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-------------g~--~FvfYDyn~P~~lp~~l-k~~fD 172 (209)
...+|+-|||=+=+. .|.+..+..+++.+|+|...... .. +|+.=|..+ +...+ .++||
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~---~l~~~~~~~fD 196 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA---FLKNAAEGSYD 196 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH---HHHTSCTTCEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH---HHHhccCCCcc
Confidence 568999999986444 34443445789999999743221 11 233323211 11112 36799
Q ss_pred EEEECCC--CCCHHH--HHHHHHHHHHhcCCCCCcEEEe
Q 028404 173 VVVVDPP--YLSKEC--LEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 173 ~Vv~DPP--Flseec--~~K~A~Tik~L~k~~~~kiilc 207 (209)
+||+||+ +...+- ...+-..++.++++ ++.|++-
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRP-GGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCC-CcEEEEe
Confidence 9999987 332111 13444455566666 4566653
No 132
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=79.39 E-value=8.8 Score=30.25 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=49.8
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+-+||=+=. ..+.+. ..+++.+|++.... .++ . +|+.-|..++. ++ .+.||+|++
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~~D~v~~ 164 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VP---EGIFHAAFV 164 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CC---TTCBSEEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cC---CCcccEEEE
Confidence 57899999986432 233333 46899999886432 222 1 34444554432 01 257999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|||-. ..+-..+..++++ +++|++.+
T Consensus 165 ~~~~~-----~~~l~~~~~~L~~-gG~l~~~~ 190 (248)
T 2yvl_A 165 DVREP-----WHYLEKVHKSLME-GAPVGFLL 190 (248)
T ss_dssp CSSCG-----GGGHHHHHHHBCT-TCEEEEEE
T ss_pred CCcCH-----HHHHHHHHHHcCC-CCEEEEEe
Confidence 99932 1223344455666 45677654
No 133
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=79.29 E-value=4.1 Score=37.31 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=55.4
Q ss_pred cccc-cccccChH------HHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccccc--------cc
Q 028404 84 DWRL-SQFWYDAV------TAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QY 148 (209)
Q Consensus 84 Dwql-SQFWYSd~------Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~--------~~ 148 (209)
.|-. ..-||... |.+.++........ .+.+|+=|+|=+=+..+.-.....+++-+|+|..-. .+
T Consensus 60 ~w~~~~~l~~p~~~~~eQat~e~vA~~~a~~l~-~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~ 138 (410)
T 3ll7_A 60 QWAGISSLYIPSRLSLEQSSGAVTSSYKSRFIR-EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLL 138 (410)
T ss_dssp HHHTSTTCCCCCHHHHHHSCCHHHHHHGGGGSC-TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred hhhhcCCeecCCCCChhhcCHHHHHHHHHHhcC-CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHh
Confidence 5654 47787744 45555555444432 367898888876555332111245899999998432 22
Q ss_pred --C-C--cceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 149 --G-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 149 --g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
| + +|+.=|..+. ++..-.++||+|++||||-+.
T Consensus 139 ~~gl~~i~~i~~Da~~~--L~~~~~~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 139 LNEGKDVNILTGDFKEY--LPLIKTFHPDYIYVDPARRSG 176 (410)
T ss_dssp SCTTCEEEEEESCGGGS--HHHHHHHCCSEEEECCEEC--
T ss_pred ccCCCcEEEEECcHHHh--hhhccCCCceEEEECCCCcCC
Confidence 2 1 3444444322 222113579999999999873
No 134
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=78.76 E-value=3.2 Score=33.65 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----CCcceeecCCCCCCchHhhccc
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----GSDFAFYDYNQPQDLPLELKHA 170 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g~~FvfYDyn~P~~lp~~lk~~ 170 (209)
..+.+.+..... ++.+|+=|||=+=.. .|.+. +.+++.+|++...... ...|+.-|... +| .-.++
T Consensus 42 ~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~---~~-~~~~~ 114 (260)
T 2avn_A 42 RLIGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAED---LP-FPSGA 114 (260)
T ss_dssp HHHHHHHHHHCC-SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTS---CC-SCTTC
T ss_pred HHHHHHHHHhcC-CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHH---CC-CCCCC
Confidence 344555555544 678999999975333 34432 4579999998755332 12466666543 22 11368
Q ss_pred ccEEEECCCCCC--HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 171 FSVVVVDPPYLS--KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 171 fD~Vv~DPPFls--eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
||+|++-.++.. .+ ...+-..+..++++ +++|++++
T Consensus 115 fD~v~~~~~~~~~~~~-~~~~l~~~~~~Lkp-gG~l~~~~ 152 (260)
T 2avn_A 115 FEAVLALGDVLSYVEN-KDKAFSEIRRVLVP-DGLLIATV 152 (260)
T ss_dssp EEEEEECSSHHHHCSC-HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEEEEEcchhhhcccc-HHHHHHHHHHHcCC-CeEEEEEe
Confidence 999998654321 22 34555666667776 55777653
No 135
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=78.70 E-value=2.9 Score=35.30 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=48.9
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccccccCCcce-ee--cCCCCC-C-----chHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYGSDFA-FY--DYNQPQ-D-----LPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~g~~Fv-fY--Dyn~P~-~-----lp~~lk~~fD~Vv~DPP 179 (209)
...+|+-|||=+-+.. +.+. + .++.+.|+|...-....++. .+ .+..|. + .-..+ ++||+||+|.+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~~ 148 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQE 148 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESSC
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECCC
Confidence 5689999999865543 4443 5 78999999987655432211 00 001110 0 00112 67999999964
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 180 YLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 180 Flseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-- . .+-..++.++++ ++.+++.+
T Consensus 149 dp-~----~~~~~~~~~L~p-gG~lv~~~ 171 (262)
T 2cmg_A 149 PD-I----HRIDGLKRMLKE-DGVFISVA 171 (262)
T ss_dssp CC-H----HHHHHHHTTEEE-EEEEEEEE
T ss_pred Ch-H----HHHHHHHHhcCC-CcEEEEEc
Confidence 21 1 133345555665 44565543
No 136
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=78.39 E-value=12 Score=30.07 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=57.4
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccc--------------ccccC--C--cceeec-CCCCCCchHhhc
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMR--------------FEQYG--S--DFAFYD-YNQPQDLPLELK 168 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~R--------------F~~~g--~--~FvfYD-yn~P~~lp~~lk 168 (209)
++.+|+=|||=+=+. .+.+. .|..+++-+|++.. +...+ + +|+.-| +.. ..+| .-.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~-~~~ 120 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD-DLGP-IAD 120 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT-CCGG-GTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh-ccCC-CCC
Confidence 678999999975443 33333 35578999999875 22222 1 344444 422 1222 113
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
++||+|++..++-...-...+.+.++.|.++ +++|+++
T Consensus 121 ~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~-gG~l~~~ 158 (275)
T 3bkx_A 121 QHFDRVVLAHSLWYFASANALALLFKNMAAV-CDHVDVA 158 (275)
T ss_dssp CCCSEEEEESCGGGSSCHHHHHHHHHHHTTT-CSEEEEE
T ss_pred CCEEEEEEccchhhCCCHHHHHHHHHHHhCC-CCEEEEE
Confidence 6899999988764322124577888888886 5677765
No 137
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=78.33 E-value=14 Score=28.75 Aligned_cols=108 Identities=11% Similarity=-0.016 Sum_probs=64.4
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C-------C-cc
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G-------S-DF 152 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g-------~-~F 152 (209)
-+...-.+.|.+.+... ++.+|+=|||=+=+. .|.+..+..+++.+|++...-.. + . +|
T Consensus 12 ~~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQS---NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88 (217)
T ss_dssp CHHHHHHHHHHHHHHHT---TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEE
T ss_pred CHHHHHHHHHHHHHHhc---CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEE
Confidence 44455666777776554 578999999985444 34444455689999998743221 1 1 34
Q ss_pred eeecCCCCCCchHhhcccccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFl--seec~~K~A~Tik~L~k~~~~kiil 206 (209)
+.-|...+ + .-.++||+|++--.+- ...-+.++-..+..+++++ +.||+
T Consensus 89 ~~~d~~~~---~-~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~li~ 139 (217)
T 3jwh_A 89 IQGALTYQ---D-KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK-IVIVT 139 (217)
T ss_dssp EECCTTSC---C-GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS-EEEEE
T ss_pred EeCCcccc---c-ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 44444221 1 1236899999866543 4444466666677777873 44443
No 138
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=78.04 E-value=2.7 Score=34.77 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=52.5
Q ss_pred CCCeEEEEeCchHH--HHHHhh-CCCCCceEEeecccc--------ccc-C-C--cceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLY--AYLKKI-RPEVSPKILEYDMRF--------EQY-G-S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~-~~~~~~~LLE~D~RF--------~~~-g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
++.+|+=+||=+=. ..|.+. .|..+++.+|++... ... | + +|+.=|..++ ++ .++||+|+
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~---~~~fD~Vi 184 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--IS---DQMYDAVI 184 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CC---SCCEEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc--Cc---CCCccEEE
Confidence 57799999987433 234443 466789999998633 222 3 1 3444455543 22 25799999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|+|-. .++-..+..++++ +++|++++
T Consensus 185 ~~~~~~-----~~~l~~~~~~Lkp-gG~l~i~~ 211 (275)
T 1yb2_A 185 ADIPDP-----WNHVQKIASMMKP-GSVATFYL 211 (275)
T ss_dssp ECCSCG-----GGSHHHHHHTEEE-EEEEEEEE
T ss_pred EcCcCH-----HHHHHHHHHHcCC-CCEEEEEe
Confidence 999843 2333444555565 45677654
No 139
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=77.95 E-value=17 Score=30.88 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc-----CCcceeecCCCC-CCchHhhcccccEEEECCCCC-
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-----GSDFAFYDYNQP-QDLPLELKHAFSVVVVDPPYL- 181 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~-----g~~FvfYDyn~P-~~lp~~lk~~fD~Vv~DPPFl- 181 (209)
++.+|+=|||=+=... |.+. +.+++-+|++...-.. ...++..|+..- ..++..+.++||+|+++..+.
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~ 122 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR 122 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence 5789999999865543 3332 4589999998754432 122344443221 112344567899999998863
Q ss_pred -CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 182 -SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 182 -seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..+=+..+-..+..++ | +++|+++
T Consensus 123 ~~~~~~~~~l~~l~~lL-P-GG~l~lS 147 (261)
T 3iv6_A 123 FTTEEARRACLGMLSLV-G-SGTVRAS 147 (261)
T ss_dssp SCHHHHHHHHHHHHHHH-T-TSEEEEE
T ss_pred CCHHHHHHHHHHHHHhC-c-CcEEEEE
Confidence 3332344444454455 6 5677765
No 140
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=77.70 E-value=1.4 Score=38.78 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCc
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDL 163 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~l 163 (209)
..++..++..+-.++.+|+=++|=|=... +....+..+++-+|+|.+-- ..| + +|+.-|..+ +
T Consensus 204 ~~la~~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~---~ 280 (373)
T 3tm4_A 204 ASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ---L 280 (373)
T ss_dssp HHHHHHHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG---G
T ss_pred HHHHHHHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh---C
Confidence 33444433332225778988888754443 33333334899999997432 122 1 455556543 2
Q ss_pred hHhhcccccEEEECCCCCCH
Q 028404 164 PLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlse 183 (209)
|. ..++||+||+||||+.+
T Consensus 281 ~~-~~~~fD~Ii~npPyg~r 299 (373)
T 3tm4_A 281 SQ-YVDSVDFAISNLPYGLK 299 (373)
T ss_dssp GG-TCSCEEEEEEECCCC--
T ss_pred Cc-ccCCcCEEEECCCCCcc
Confidence 21 12679999999999854
No 141
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=77.52 E-value=6 Score=31.40 Aligned_cols=102 Identities=19% Similarity=0.138 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cCC--cceeecCCCCCCch
Q 028404 97 AETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YGS--DFAFYDYNQPQDLP 164 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g~--~FvfYDyn~P~~lp 164 (209)
+..+.+.+......++.+|+=|||=+=.. .|.+. +.+++.+|++..... .+. +|+.-|.... +
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~---~ 101 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI---A 101 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC---C
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc---c
Confidence 44455555444322567999999975333 34332 458999999864322 221 4555554431 1
Q ss_pred HhhcccccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 165 LELKHAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 165 ~~lk~~fD~Vv~D---PPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
+.++||+|++- +++.+.+.+.++-..+..++++ ++.+|+
T Consensus 102 --~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~li~ 143 (252)
T 1wzn_A 102 --FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKP-GGVFIT 143 (252)
T ss_dssp --CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEE-EEEEEE
T ss_pred --cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCC-CeEEEE
Confidence 23679999863 5667766667777777777887 456665
No 142
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=77.50 E-value=3.1 Score=40.32 Aligned_cols=47 Identities=30% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCceEEeecccccc--------cC-C---cceeecCCCCCCchHhh-cccccEEEECCCCCCH
Q 028404 134 VSPKILEYDMRFEQ--------YG-S---DFAFYDYNQPQDLPLEL-KHAFSVVVVDPPYLSK 183 (209)
Q Consensus 134 ~~~~LLE~D~RF~~--------~g-~---~FvfYDyn~P~~lp~~l-k~~fD~Vv~DPPFlse 183 (209)
.+++=.|+|.+--. .| + +|..-|..+ +.... .++||+||++|||+.+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~---~~~~~~~~~~d~Iv~NPPYG~R 316 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQ---LTNPLPKGPYGTVLSNPPYGER 316 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGG---CCCSCTTCCCCEEEECCCCCC-
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh---CccccccCCCCEEEeCCCcccc
Confidence 46788888875421 12 1 344444432 11111 2379999999999864
No 143
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=77.29 E-value=27 Score=28.27 Aligned_cols=106 Identities=8% Similarity=0.027 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhh----CCCCCceEEeeccccccc----CC--cceeecCCCCC
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI----RPEVSPKILEYDMRFEQY----GS--DFAFYDYNQPQ 161 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~----~~~~~~~LLE~D~RF~~~----g~--~FvfYDyn~P~ 161 (209)
.+|...+...+... +..+|+=|||=+=+.. |.+. .+..+++-+|++...... +. +|+.=|..+..
T Consensus 67 p~~~~~l~~~l~~~---~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~ 143 (236)
T 2bm8_A 67 PDTQAVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLT 143 (236)
T ss_dssp HHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSG
T ss_pred HHHHHHHHHHHHhc---CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHH
Confidence 77777777666554 4679999999865543 3332 466789999999876332 12 56666665542
Q ss_pred CchHhhcc-cccEEEECCCCCCHHHHHHHHHHHHH-hcCCCCCcEEEe
Q 028404 162 DLPLELKH-AFSVVVVDPPYLSKECLEKVSETVSF-LARPGDSKLLLL 207 (209)
Q Consensus 162 ~lp~~lk~-~fD~Vv~DPPFlseec~~K~A~Tik~-L~k~~~~kiilc 207 (209)
.++ .+.+ +||+|++|-... +. ..+-..+.. ++++ ++.|++.
T Consensus 144 ~l~-~~~~~~fD~I~~d~~~~--~~-~~~l~~~~r~~Lkp-GG~lv~~ 186 (236)
T 2bm8_A 144 TFE-HLREMAHPLIFIDNAHA--NT-FNIMKWAVDHLLEE-GDYFIIE 186 (236)
T ss_dssp GGG-GGSSSCSSEEEEESSCS--SH-HHHHHHHHHHTCCT-TCEEEEC
T ss_pred HHH-hhccCCCCEEEECCchH--hH-HHHHHHHHHhhCCC-CCEEEEE
Confidence 122 2333 699999988743 22 333333443 6676 4566663
No 144
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=76.99 E-value=4.4 Score=33.81 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCCeEEEEeCchHHHHHH---hhCCCCCceEEeecccc--------cccCC----cceeecCCCCCCchHhhcccccEEE
Q 028404 111 SDSRVACIACPTLYAYLK---KIRPEVSPKILEYDMRF--------EQYGS----DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk---~~~~~~~~~LLE~D~RF--------~~~g~----~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
++.+|+=|||=+=+..+. ...++.+++.+|++... ...|- +|+.-|..+ +| +.++||+|+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~--~~~~fD~v~ 192 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK---LD--TREGYDLLT 192 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG---CC--CCSCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc---CC--ccCCeEEEE
Confidence 678999999987554433 23567799999998643 22221 355555543 22 127899999
Q ss_pred ECCCCC---CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 176 VDPPYL---SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 176 ~DPPFl---seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+.+++. ..+....+-..+..++++ +++|++++
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 227 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKP-GGALVTSF 227 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEEC
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCC-CeEEEEEe
Confidence 998875 444334455666667776 56777764
No 145
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=76.78 E-value=2.6 Score=33.39 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=64.8
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeeccc--------ccccC--C--cceeecCC
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG--S--DFAFYDYN 158 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~R--------F~~~g--~--~FvfYDyn 158 (209)
|+.......|.+.+..... +..+|+=|||=+=...+.-..++.+++.+|++.. +...+ . +|+.-|..
T Consensus 47 ~~~~~~~~~l~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 125 (235)
T 3lcc_A 47 WDQGRATPLIVHLVDTSSL-PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125 (235)
T ss_dssp TCCSSCCHHHHHHHHTTCS-CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTT
T ss_pred cccCCCCHHHHHHHHhcCC-CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchh
Confidence 4444444556665554432 4569999999865554332234567899999863 22221 1 46666665
Q ss_pred CCCCchHhhcccccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 159 QPQDLPLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 159 ~P~~lp~~lk~~fD~Vv~DPPFl--seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
++. ..++||+|++-..+- ..+-..++...+..++++ +++||+.
T Consensus 126 ~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 170 (235)
T 3lcc_A 126 TWR-----PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKP-DGELITL 170 (235)
T ss_dssp TCC-----CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEE-EEEEEEE
T ss_pred cCC-----CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCC-CcEEEEE
Confidence 432 134899999765543 333345666667777777 4567654
No 146
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=76.76 E-value=3.1 Score=33.81 Aligned_cols=93 Identities=16% Similarity=0.074 Sum_probs=54.5
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccc--------ccccCC--cceeecCCCCCCchHhh-cccccEEEEC
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR--------FEQYGS--DFAFYDYNQPQDLPLEL-KHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~R--------F~~~g~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~D 177 (209)
+++||+=|||=+=+.. |.+..+ .+++.+|++.- +...+. .+++-|.. .+...+ .++||.|+.|
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE---DVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHH---HHGGGSCTTCEEEEEEC
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHH---hhcccccccCCceEEEe
Confidence 6789999999865553 333223 36888999863 222232 33333321 111122 3679999999
Q ss_pred CCCCCHHH-----HHHHHHHHHHhcCCCCCcEEEec
Q 028404 178 PPYLSKEC-----LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 178 PPFlseec-----~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+......- .+++..-+..++|| |++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~rvLkP-GG~l~f~~ 170 (236)
T 3orh_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKP-GGVLTYCN 170 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEE-EEEEEECC
T ss_pred eeecccchhhhcchhhhhhhhhheeCC-CCEEEEEe
Confidence 87664321 23444456667787 56787764
No 147
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=76.66 E-value=15 Score=32.23 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=65.9
Q ss_pred cccccccChHHHHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccc--------ccccC-C--c
Q 028404 86 RLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMR--------FEQYG-S--D 151 (209)
Q Consensus 86 qlSQFWYSd~Ta~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~R--------F~~~g-~--~ 151 (209)
.++.|.|-++-...+..++ .++. .++.+|+.|||=+... .+....++.+++-+|+|.. +...| . +
T Consensus 97 ~l~~fpy~~~~~~l~~~E~-~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~ 175 (298)
T 3fpf_A 97 TLRSFYFYPRYLELLKNEA-ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVN 175 (298)
T ss_dssp HHHTSTTHHHHHHHHHHHH-HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEE
T ss_pred hhccCCCcccHHHHHHHHH-HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeE
Confidence 3578888777555555554 3432 3689999999954321 1112246778999999862 32223 2 2
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|+.=|.. ++| .++||+|+++= +.. ...++-..+...+|| +++|++-.
T Consensus 176 ~v~gDa~---~l~---d~~FDvV~~~a--~~~-d~~~~l~el~r~LkP-GG~Lvv~~ 222 (298)
T 3fpf_A 176 VITGDET---VID---GLEFDVLMVAA--LAE-PKRRVFRNIHRYVDT-ETRIIYRT 222 (298)
T ss_dssp EEESCGG---GGG---GCCCSEEEECT--TCS-CHHHHHHHHHHHCCT-TCEEEEEE
T ss_pred EEECchh---hCC---CCCcCEEEECC--Ccc-CHHHHHHHHHHHcCC-CcEEEEEc
Confidence 3332322 244 47899999862 222 234566667777777 56777643
No 148
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=76.20 E-value=17 Score=28.19 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC---------------C-cceee
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG---------------S-DFAFY 155 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g---------------~-~FvfY 155 (209)
..-.+.+.+.+... ++.+|+=|||=+=+. .|.+..+..+++.+|++....... . +|+.-
T Consensus 15 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 15 QQRLGTVVAVLKSV---NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHHHHT---TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHhhc---CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence 34445555555443 578999999985444 444444557899999987543221 1 34444
Q ss_pred cCCCCCCchHhhcccccEEEECCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 156 DYNQPQDLPLELKHAFSVVVVDPPY--LSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPF--lseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|...+ + .-.++||+|++--.+ +..+-+.++-..+..++++ ++ +|++
T Consensus 92 d~~~~---~-~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG-~~i~ 139 (219)
T 3jwg_A 92 SLVYR---D-KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QT-VIVS 139 (219)
T ss_dssp CSSSC---C-GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC-SE-EEEE
T ss_pred ccccc---c-cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC-CE-EEEE
Confidence 54221 1 123689999876543 3333445666777777787 34 4443
No 149
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=76.19 E-value=2.3 Score=33.04 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccCC--------cceeecCCCCCCchHhhccccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYGS--------DFAFYDYNQPQDLPLELKHAFS 172 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g~--------~FvfYDyn~P~~lp~~lk~~fD 172 (209)
++.+|+=|||=+=.. .+.+. +.+++.+|++.... ..+- +|+.-|.... .++ .++||
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~---~~~~D 103 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFH---DSSFD 103 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSC---TTCEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCC---CCcee
Confidence 678999999975433 33332 45899999987332 1111 3555555432 111 36899
Q ss_pred EEEECCCCC---CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 173 VVVVDPPYL---SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 173 ~Vv~DPPFl---seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+|++...+. ..+-+.++-..++.++++ +++|+++
T Consensus 104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 140 (235)
T 3sm3_A 104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKP-GAYLYLV 140 (235)
T ss_dssp EEEEESCGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEEEcchhhcCCCHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 999976654 233334666667777777 5577765
No 150
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=75.61 E-value=4 Score=31.65 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=57.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----CCcceeecCCCCCCchHhhcccccEEEECCCCC--
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----GSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYL-- 181 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl-- 181 (209)
++.+|+=|||=+=.. .|.+. +.+++.+|++...... +-.|+.-|+.. +| ..++||+|++...+.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~---~~--~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQ---LD--AIDAYDAVWAHACLLHV 115 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGG---CC--CCSCEEEEEECSCGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeecc---CC--CCCcEEEEEecCchhhc
Confidence 578999999875443 34332 4589999998754332 22455556543 22 357899999987553
Q ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 182 SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 182 seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
..+-+..+-..+..++++ ++++++++
T Consensus 116 ~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 141 (211)
T 3e23_A 116 PRDELADVLKLIWRALKP-GGLFYASY 141 (211)
T ss_dssp CHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 433456666677777777 55777653
No 151
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=75.59 E-value=3.7 Score=35.03 Aligned_cols=87 Identities=18% Similarity=0.127 Sum_probs=49.1
Q ss_pred ccccccc-ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------C-C--c
Q 028404 86 RLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------G-S--D 151 (209)
Q Consensus 86 qlSQFWY-Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g-~--~ 151 (209)
.+.|.|. +++.++.+++.+. . . ++.+|+=|||=+=.. .|.+. ..+++-+|+|.+.... + + +
T Consensus 19 ~~Gq~fl~~~~i~~~i~~~~~-~-~-~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~ 93 (299)
T 2h1r_A 19 FQGQHLLKNPGILDKIIYAAK-I-K-SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLE 93 (299)
T ss_dssp ----CEECCHHHHHHHHHHHC-C-C-TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred ccccceecCHHHHHHHHHhcC-C-C-CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceE
Confidence 4557665 6667777776652 2 1 567899898874333 34332 4589999999865321 1 1 3
Q ss_pred ceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
|+.=|... ++ .++||+||++|||-..
T Consensus 94 ~~~~D~~~---~~---~~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 94 VYEGDAIK---TV---FPKFDVCTANIPYKIS 119 (299)
T ss_dssp C----CCS---SC---CCCCSEEEEECCGGGH
T ss_pred EEECchhh---CC---cccCCEEEEcCCcccc
Confidence 44444322 11 1379999999999753
No 152
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=75.24 E-value=7.1 Score=30.22 Aligned_cols=100 Identities=14% Similarity=0.041 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----C-C-cceeecCCCCCCchHhhc
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----G-S-DFAFYDYNQPQDLPLELK 168 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g-~-~FvfYDyn~P~~lp~~lk 168 (209)
..+.+.+... ++.+|+=|||=+=.. .|.+. +.+++.+|++...-.. + . +|+.-|..+ +|..
T Consensus 35 ~~~l~~~~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~---~~~~-- 104 (220)
T 3hnr_A 35 EDILEDVVNK---SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLS---FEVP-- 104 (220)
T ss_dssp HHHHHHHHHT---CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSS---CCCC--
T ss_pred HHHHHHhhcc---CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhh---cCCC--
Confidence 3445554433 568999999975433 34442 4689999998754322 1 1 455555543 2222
Q ss_pred ccccEEEECCCCCCHHHHHH--HHHHHHHhcCCCCCcEEEec
Q 028404 169 HAFSVVVVDPPYLSKECLEK--VSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K--~A~Tik~L~k~~~~kiilcT 208 (209)
++||+|++.-.+-.-.-... +-..+..++++ ++++++++
T Consensus 105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 145 (220)
T 3hnr_A 105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNK-GGKIVFAD 145 (220)
T ss_dssp SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred CCeEEEEECcchhcCChHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 78999998865543221222 55666677787 56777763
No 153
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=75.11 E-value=9.8 Score=30.06 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=60.8
Q ss_pred HHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cCC-cceeecCCCCCCchHhhc
Q 028404 101 AQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YGS-DFAFYDYNQPQDLPLELK 168 (209)
Q Consensus 101 a~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g~-~FvfYDyn~P~~lp~~lk 168 (209)
++.+++... .++.+|+=|||=+=.. .|.+.. +.+++.+|++..... ... +|+.-|.... .++ .
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~---~ 118 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-EFP---E 118 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-CCC---T
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-CCC---C
Confidence 444444432 2577999999974333 333322 468999999874321 111 5666676543 122 3
Q ss_pred ccccEEEECCCCCCH--HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 169 HAFSVVVVDPPYLSK--ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 169 ~~fD~Vv~DPPFlse--ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++||+|++--.+..- .-...+-..+..++++ +++|++.+
T Consensus 119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 159 (266)
T 3ujc_A 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKP-TGTLLITD 159 (266)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence 689999987655432 4446666667777777 55777653
No 154
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=74.47 E-value=12 Score=28.99 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccccCCcceeecCCCCCCchHhhcccccEE
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVV 174 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~V 174 (209)
.....+.+.+... . ++.+|+=|||=+=.....- ..+++.+|++.. .-+|+.-|..+. .++ .++||+|
T Consensus 53 ~~~~~~~~~l~~~-~-~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----~~~~~~~d~~~~-~~~---~~~fD~v 119 (215)
T 2zfu_A 53 QPVDRIARDLRQR-P-ASLVVADFGCGDCRLASSI---RNPVHCFDLASL----DPRVTVCDMAQV-PLE---DESVDVA 119 (215)
T ss_dssp CHHHHHHHHHHTS-C-TTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----STTEEESCTTSC-SCC---TTCEEEE
T ss_pred hHHHHHHHHHhcc-C-CCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----CceEEEeccccC-CCC---CCCEeEE
Confidence 3445566666544 2 5689999999865543321 257888888876 224565565441 122 3679999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 175 VVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 175 v~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
++-..+-..+. ..+-..+..++++ +++++++
T Consensus 120 ~~~~~l~~~~~-~~~l~~~~~~L~~-gG~l~i~ 150 (215)
T 2zfu_A 120 VFCLSLMGTNI-RDFLEEANRVLKP-GGLLKVA 150 (215)
T ss_dssp EEESCCCSSCH-HHHHHHHHHHEEE-EEEEEEE
T ss_pred EEehhccccCH-HHHHHHHHHhCCC-CeEEEEE
Confidence 98777654443 4455555666666 4567765
No 155
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=73.58 E-value=9.3 Score=32.75 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=50.5
Q ss_pred ccccccccChHHHHHHHHHHHhhc-C-CCCCeEEEEeCchHH--HHHHhhCC-----CCCceEEeecccccc--------
Q 028404 85 WRLSQFWYDAVTAETVAQEAVSLC-S-DSDSRVACIACPTLY--AYLKKIRP-----EVSPKILEYDMRFEQ-------- 147 (209)
Q Consensus 85 wqlSQFWYSd~Ta~~La~~l~~~a-~-~~~~rIaclstPSly--~~Lk~~~~-----~~~~~LLE~D~RF~~-------- 147 (209)
.+..|| |+..++..++..++... . .++.+|+=+||=|=. ..+.+..+ ..+++-.|+|..-..
T Consensus 103 ~~~g~~-~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~ 181 (344)
T 2f8l_A 103 IQVNHQ-MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL 181 (344)
T ss_dssp CCGGGC-CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred cccCcC-CChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh
Confidence 344555 67777766644444321 1 134577766665422 22222211 157889999874321
Q ss_pred cC--CcceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 148 YG--SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 148 ~g--~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
.| .+++.-|.-.|. ..++||+||++|||+.
T Consensus 182 ~g~~~~i~~~D~l~~~-----~~~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 182 QRQKMTLLHQDGLANL-----LVDPVDVVISDLPVGY 213 (344)
T ss_dssp HTCCCEEEESCTTSCC-----CCCCEEEEEEECCCSE
T ss_pred CCCCceEEECCCCCcc-----ccCCccEEEECCCCCC
Confidence 12 245555544432 1367999999999864
No 156
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=73.28 E-value=3.9 Score=36.16 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=48.8
Q ss_pred eEEEEeCchH--HHHHHhhCCCCCceEEeecccccccCC-----------cceeecCCCCCCchHhh-cccccEEEECCC
Q 028404 114 RVACIACPTL--YAYLKKIRPEVSPKILEYDMRFEQYGS-----------DFAFYDYNQPQDLPLEL-KHAFSVVVVDPP 179 (209)
Q Consensus 114 rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~RF~~~g~-----------~FvfYDyn~P~~lp~~l-k~~fD~Vv~DPP 179 (209)
+|+.|||=+- -..|.+..|+.++..+|+|...-.... +++.=|.. ++...+ .++||+||+|.+
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~---~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDAR---MVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHH---HHHHTCCTTCEEEEEECCS
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHH---HHHhhccCCCCCEEEECCC
Confidence 9999999743 344555467789999999986543311 12222211 011122 357999999964
Q ss_pred CCC--HHHH--HHHHHHHHHhcCCCCCcEEEe
Q 028404 180 YLS--KECL--EKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 180 Fls--eec~--~K~A~Tik~L~k~~~~kiilc 207 (209)
... ..-+ ..+-+.++.++++ ++.+++-
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~Lkp-gGvlv~~ 199 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAP-GGLYVAN 199 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEE-EEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 321 0000 2233445556666 3455543
No 157
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=72.31 E-value=4.2 Score=33.25 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=59.7
Q ss_pred HHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccc--------ccccC--C--cceeecCCCCCCchH
Q 028404 100 VAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMR--------FEQYG--S--DFAFYDYNQPQDLPL 165 (209)
Q Consensus 100 La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~R--------F~~~g--~--~FvfYDyn~P~~lp~ 165 (209)
|.+.+..... .+.+|+=|||=+=.. .|.+. +.+++.+|++.. +...| . +|+.-|... ++.
T Consensus 58 l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~ 131 (285)
T 4htf_A 58 LDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQD---VAS 131 (285)
T ss_dssp HHHHHHHTCS-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGG---TGG
T ss_pred HHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHH---hhh
Confidence 3344444432 467999999985443 34332 568999999863 22222 1 366666644 333
Q ss_pred hhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 166 ELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 166 ~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
...++||+|++.-.+-...-..++-..+..++++ ++.+++.+
T Consensus 132 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 173 (285)
T 4htf_A 132 HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRP-GGVLSLMF 173 (285)
T ss_dssp GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred hcCCCceEEEECchhhcccCHHHHHHHHHHHcCC-CeEEEEEE
Confidence 3457899999876553211124566667777777 55677653
No 158
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=72.15 E-value=5.2 Score=31.20 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=58.2
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCC-CCCceEEeeccccccc--------C--C--cceeec
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDMRFEQY--------G--S--DFAFYD 156 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~-~~~~~LLE~D~RF~~~--------g--~--~FvfYD 156 (209)
.+..+...|...+... +..+|+=|||=+=+.. |.+..+ +.+++.+|++...... | . +|+.=|
T Consensus 40 ~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 116 (210)
T 3c3p_A 40 VDRQTGRLLYLLARIK---QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGD 116 (210)
T ss_dssp CCHHHHHHHHHHHHHH---CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 5566666555444333 5689999999766654 333334 6789999998754322 1 1 122222
Q ss_pred CCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 157 YNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
..+ +...+.+ ||+|++|.+.... ..+-..+..++++ ++.|++
T Consensus 117 ~~~---~~~~~~~-fD~v~~~~~~~~~---~~~l~~~~~~Lkp-gG~lv~ 158 (210)
T 3c3p_A 117 PLG---IAAGQRD-IDILFMDCDVFNG---ADVLERMNRCLAK-NALLIA 158 (210)
T ss_dssp HHH---HHTTCCS-EEEEEEETTTSCH---HHHHHHHGGGEEE-EEEEEE
T ss_pred HHH---HhccCCC-CCEEEEcCChhhh---HHHHHHHHHhcCC-CeEEEE
Confidence 211 1112346 9999999875433 3334444455665 455665
No 159
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=71.84 E-value=2.9 Score=32.87 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-------CC-cceeecCCCCCCchHh
Q 028404 97 AETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-------GS-DFAFYDYNQPQDLPLE 166 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-------g~-~FvfYDyn~P~~lp~~ 166 (209)
...+.+.+..... ++.+|+=|||=+=.. .|.+. +.+++.+|++...... .. +|+.-|..+. .++
T Consensus 40 ~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~-- 113 (242)
T 3l8d_A 40 RSTIIPFFEQYVK-KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL-PFE-- 113 (242)
T ss_dssp TTTHHHHHHHHSC-TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC-SSC--
T ss_pred HHHHHHHHHHHcC-CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcC-CCC--
Confidence 3445566666554 678999999985433 34442 4589999998754322 11 4666665532 122
Q ss_pred hcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 167 LKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 167 lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++||+|++--.+-...-..++...+..++++ ++++++.+
T Consensus 114 -~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~ 153 (242)
T 3l8d_A 114 -NEQFEAIMAINSLEWTEEPLRALNEIKRVLKS-DGYACIAI 153 (242)
T ss_dssp -TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred -CCCccEEEEcChHhhccCHHHHHHHHHHHhCC-CeEEEEEE
Confidence 46899998866554322234566667777777 55777654
No 160
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=71.66 E-value=5.6 Score=33.73 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=53.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCC-CCCceEEeecccc--------cccC-C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRP-EVSPKILEYDMRF--------EQYG-S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~-~~~~~LLE~D~RF--------~~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=+. .+.+..+ ..+++.+|++... ...| . +|+.-|+.+. ++ ..++||+|++
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~--~~--~~~~fD~Iv~ 150 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG--VP--EFSPYDVIFV 150 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC--CG--GGCCEEEEEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc--cc--cCCCeEEEEE
Confidence 678999999985443 3333333 3569999998633 2222 1 4555565542 22 1367999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
++|+-.-. ..+..++++ ++++++..
T Consensus 151 ~~~~~~~~------~~~~~~Lkp-gG~lvi~~ 175 (317)
T 1dl5_A 151 TVGVDEVP------ETWFTQLKE-GGRVIVPI 175 (317)
T ss_dssp CSBBSCCC------HHHHHHEEE-EEEEEEEB
T ss_pred cCCHHHHH------HHHHHhcCC-CcEEEEEE
Confidence 99986532 345556776 45777654
No 161
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=71.57 E-value=8.7 Score=30.85 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCC
Q 028404 97 AETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQ 161 (209)
Q Consensus 97 a~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~ 161 (209)
...+++.+++... .++.+|+=|||=+=.. .+.+.. +.+++.+|++.... ..| + +|+.-|+.+.
T Consensus 46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~- 123 (273)
T 3bus_A 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL- 123 (273)
T ss_dssp HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-
Confidence 4455566665543 2578999999975333 333322 46899999986432 222 1 4666666541
Q ss_pred CchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 162 DLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 162 ~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++ .++||+|++--.+..-.-...+-..++.++++ +++|++++
T Consensus 124 ~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~ 166 (273)
T 3bus_A 124 PFE---DASFDAVWALESLHHMPDRGRALREMARVLRP-GGTVAIAD 166 (273)
T ss_dssp CSC---TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred CCC---CCCccEEEEechhhhCCCHHHHHHHHHHHcCC-CeEEEEEE
Confidence 122 36899998766554321124555566666776 55777653
No 162
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=70.73 E-value=4.9 Score=34.66 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=57.5
Q ss_pred ccccc-cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHHHHhh-CCCCCceEEeeccccccc--------C--C--
Q 028404 85 WRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G--S-- 150 (209)
Q Consensus 85 wqlSQ-FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~Lk~~-~~~~~~~LLE~D~RF~~~--------g--~-- 150 (209)
|..+. ||++....++. .+.+... ++.+|+=++|=+=+..|.-. ....+++-.|.+..--.+ | +
T Consensus 101 ~D~~k~~f~~~~~~er~--ri~~~~~-~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v 177 (278)
T 3k6r_A 101 LDVAKIMFSPANVKERV--RMAKVAK-PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM 177 (278)
T ss_dssp EETTTSCCCGGGHHHHH--HHHHHCC-TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE
T ss_pred EeccceEEcCCcHHHHH--HHHHhcC-CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 34444 88888777763 2344443 57788877776443332211 133468888887632211 1 1
Q ss_pred cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhc
Q 028404 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLA 197 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~ 197 (209)
.++.-|... ++ .++.||+||++||+.+.+-|.. +++.|.
T Consensus 178 ~~~~~D~~~---~~--~~~~~D~Vi~~~p~~~~~~l~~---a~~~lk 216 (278)
T 3k6r_A 178 SAYNMDNRD---FP--GENIADRILMGYVVRTHEFIPK---ALSIAK 216 (278)
T ss_dssp EEECSCTTT---CC--CCSCEEEEEECCCSSGGGGHHH---HHHHEE
T ss_pred EEEeCcHHH---hc--cccCCCEEEECCCCcHHHHHHH---HHHHcC
Confidence 223334322 22 1467999999999999876643 444443
No 163
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=70.53 E-value=4.7 Score=31.03 Aligned_cols=92 Identities=14% Similarity=0.013 Sum_probs=54.5
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccccC----CcceeecCCCC-CCchHhhcccccEEEECCCCCCH
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYG----SDFAFYDYNQP-QDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~g----~~FvfYDyn~P-~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
++.+|+=|||=+=. ..+.+. +.+++.+|++....... .+|+.-|.... ..++ .++||+|++.-.+-.-
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~fD~v~~~~~l~~~ 106 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYE---EEQFDCVIFGDVLEHL 106 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSC---TTCEEEEEEESCGGGS
T ss_pred CCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCC---CCccCEEEECChhhhc
Confidence 67899999987533 344443 37899999988654331 25666666531 2222 2689999986544221
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 184 ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 184 ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.-..++-..++.++++ ++.+++++
T Consensus 107 ~~~~~~l~~~~~~L~~-gG~l~~~~ 130 (230)
T 3cc8_A 107 FDPWAVIEKVKPYIKQ-NGVILASI 130 (230)
T ss_dssp SCHHHHHHHTGGGEEE-EEEEEEEE
T ss_pred CCHHHHHHHHHHHcCC-CCEEEEEe
Confidence 1124455555566666 55677654
No 164
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=70.25 E-value=12 Score=31.20 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccc--------cccC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF--------~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
+..+|+-|||=+=. ..+.+..|+.+++.+|++ .. ...| + +|+..|+.++ .+| ..||+|++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~----~~~D~v~~ 238 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-DYG----NDYDLVLL 238 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-CCC----SCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-CCC----CCCcEEEE
Confidence 56899999997533 345555677899999998 33 2221 1 5777777653 233 34998887
Q ss_pred -CCCC-CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 177 -DPPY-LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 177 -DPPF-ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.... .+ ++| .++-..++.++++ +++|+++
T Consensus 239 ~~~l~~~~~~~~-~~~l~~~~~~L~p-gG~l~i~ 270 (335)
T 2r3s_A 239 PNFLHHFDVATC-EQLLRKIKTALAV-EGKVIVF 270 (335)
T ss_dssp ESCGGGSCHHHH-HHHHHHHHHHEEE-EEEEEEE
T ss_pred cchhccCCHHHH-HHHHHHHHHhCCC-CcEEEEE
Confidence 4443 23 444 4555555566666 5577765
No 165
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=70.23 E-value=1.3 Score=36.31 Aligned_cols=90 Identities=7% Similarity=0.022 Sum_probs=55.1
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----CC-cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
++.+|+=|||=+=.. .|.+ ++.+++.+|++...... +. .|+.-|... +| +.++||+|++--.+-.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~---~~--~~~~fD~v~~~~~l~~ 129 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARN---FR--VDKPLDAVFSNAMLHW 129 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTT---CC--CSSCEEEEEEESCGGG
T ss_pred CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhh---CC--cCCCcCEEEEcchhhh
Confidence 578999999975433 3433 56789999998654322 11 566666653 33 2478999998766532
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 183 KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 183 eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-.-..++-..++.++++ +++|++.+
T Consensus 130 ~~d~~~~l~~~~~~Lkp-gG~l~~~~ 154 (279)
T 3ccf_A 130 VKEPEAAIASIHQALKS-GGRFVAEF 154 (279)
T ss_dssp CSCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CcCHHHHHHHHHHhcCC-CcEEEEEe
Confidence 11134555556666676 45677653
No 166
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=70.01 E-value=7 Score=33.91 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=45.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc--------cccccCC--cceeecCCCCCCchHhhc----ccccEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM--------RFEQYGS--DFAFYDYNQPQDLPLELK----HAFSVV 174 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~--------RF~~~g~--~FvfYDyn~P~~lp~~lk----~~fD~V 174 (209)
++.+|+=++|=+=.. .|.+..++.+++-+|.|. |...+|. .|+.=|+. .++..+. ++||.|
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~---~l~~~l~~~g~~~~D~V 102 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR---EADFLLKTLGIEKVDGI 102 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG---GHHHHHHHTTCSCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHH---HHHHHHHhcCCCCCCEE
Confidence 567888888764333 344445567899999996 4444543 34554553 3554343 579999
Q ss_pred EECCCCCCH
Q 028404 175 VVDPPYLSK 183 (209)
Q Consensus 175 v~DPPFlse 183 (209)
++|||+.+.
T Consensus 103 l~D~gvSs~ 111 (301)
T 1m6y_A 103 LMDLGVSTY 111 (301)
T ss_dssp EEECSCCHH
T ss_pred EEcCccchh
Confidence 999998653
No 167
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=69.35 E-value=37 Score=26.23 Aligned_cols=103 Identities=20% Similarity=0.118 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCchH--HHHHHhhCCCCCceEEeeccccccc-----CC-cceeecCCCCCCchHhh
Q 028404 96 TAETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRFEQY-----GS-DFAFYDYNQPQDLPLEL 167 (209)
Q Consensus 96 Ta~~La~~l~~~a~~~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~RF~~~-----g~-~FvfYDyn~P~~lp~~l 167 (209)
....+++.+..... ++.+|+=|||=+= -..|.+..+ +++.+|++...... +. +|+.-|.... | +
T Consensus 26 ~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~---~--~ 97 (239)
T 3bxo_A 26 EASDIADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDF---R--L 97 (239)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTC---C--C
T ss_pred HHHHHHHHHHHhcC-CCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHc---c--c
Confidence 44556666666543 6789999999743 233444322 78899998654322 11 5666666542 2 1
Q ss_pred cccccEEEECC---CCC-CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 168 KHAFSVVVVDP---PYL-SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 168 k~~fD~Vv~DP---PFl-seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.++||+|++-- .++ +.+-+.++-..+..++++ ++++|+.
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 140 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP-GGVVVVE 140 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEE-EEEEEEC
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 46899999421 223 334445666666777776 5567765
No 168
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=68.93 E-value=23 Score=28.64 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=57.5
Q ss_pred HHHHHHHhhcC-CCCCeEEEEeCchH--HHHHHhhCCCCCceEEeecccc--------cccC--C--cceeecCCCCCCc
Q 028404 99 TVAQEAVSLCS-DSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDL 163 (209)
Q Consensus 99 ~La~~l~~~a~-~~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~RF--------~~~g--~--~FvfYDyn~P~~l 163 (209)
.+.+.+++... .++.+|+=|||=+= -..+.+.. +.+++.+|++... ...| . +|+.-|+. ++
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~ 126 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE---QF 126 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG---GC
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh---hC
Confidence 34455555432 25779999999643 22333222 3489999998643 2222 1 34555553 23
Q ss_pred hHhhcccccEEEECCCCCCH--HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 164 PLELKHAFSVVVVDPPYLSK--ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlse--ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
| ++||+|++--.+..- +-..++-..+..+++| ++++++.+
T Consensus 127 ~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 168 (287)
T 1kpg_A 127 D----EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA-DGVMLLHT 168 (287)
T ss_dssp C----CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred C----CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 4 789999876443211 2235566667777787 56777653
No 169
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=68.89 E-value=7.9 Score=34.69 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=61.8
Q ss_pred cccCcccccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeC-c---hHHHHHHhhCCCCCceEEeecc-ccc------
Q 028404 78 VALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIAC-P---TLYAYLKKIRPEVSPKILEYDM-RFE------ 146 (209)
Q Consensus 78 ~~~~~EDwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclst-P---Sly~~Lk~~~~~~~~~LLE~D~-RF~------ 146 (209)
+.++.+.+-.-|=||-.+-+..|+-.++... ++.+|+=+|+ | |++.+ .......++-.|++. |..
T Consensus 117 ~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~--pg~~VLD~CAaPGGKT~~la--~~~~~~~l~A~D~~~~R~~~l~~~l 192 (359)
T 4fzv_A 117 FPPARPGSLGVMEYYLMDAASLLPVLALGLQ--PGDIVLDLCAAPGGKTLALL--QTGCCRNLAANDLSPSRIARLQKIL 192 (359)
T ss_dssp CCCCCBCTTSSBSEEEECGGGHHHHHHHCCC--TTEEEEESSCTTCHHHHHHH--HTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCcccCceeccchhhhCHHHHHHHHHhCCC--CCCEEEEecCCccHHHHHHH--HhcCCCcEEEEcCCHHHHHHHHHHH
Confidence 4577888888888888888888888887663 5677776554 4 55443 222333577777774 222
Q ss_pred -ccC-------C--cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 147 -QYG-------S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 147 -~~g-------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
.+| . ....+|. ..++....+.||.|++|||=-+
T Consensus 193 ~r~~~~~~~~~~~v~v~~~D~---~~~~~~~~~~fD~VLlDaPCSg 235 (359)
T 4fzv_A 193 HSYVPEEIRDGNQVRVTSWDG---RKWGELEGDTYDRVLVDVPCTT 235 (359)
T ss_dssp HHHSCTTTTTSSSEEEECCCG---GGHHHHSTTCEEEEEEECCCCC
T ss_pred HHhhhhhhccCCceEEEeCch---hhcchhccccCCEEEECCccCC
Confidence 111 1 1223343 3345555678999999999655
No 170
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=67.93 E-value=12 Score=28.79 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=55.9
Q ss_pred HHHhhcCCCCCeEEEEeCchHHHHHHhhCCCC-CceEEeeccccccc-----CC-cceeecCCCCCCchHhhcccccEEE
Q 028404 103 EAVSLCSDSDSRVACIACPTLYAYLKKIRPEV-SPKILEYDMRFEQY-----GS-DFAFYDYNQPQDLPLELKHAFSVVV 175 (209)
Q Consensus 103 ~l~~~a~~~~~rIaclstPSly~~Lk~~~~~~-~~~LLE~D~RF~~~-----g~-~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (209)
.+..... ++.+|+=|||=+=.....- +. +++.+|++...... .. +|+.-|... +| .-.++||+|+
T Consensus 29 ~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~---~~-~~~~~fD~v~ 100 (211)
T 2gs9_A 29 ALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEA---LP-FPGESFDVVL 100 (211)
T ss_dssp HHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTS---CC-SCSSCEEEEE
T ss_pred HHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEccccc---CC-CCCCcEEEEE
Confidence 3434433 6789999999765443321 34 78899988654322 11 455555433 22 1136799999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+.-.+-.-.-..++-..+..++++ ++++++++
T Consensus 101 ~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~ 132 (211)
T 2gs9_A 101 LFTTLEFVEDVERVLLEARRVLRP-GGALVVGV 132 (211)
T ss_dssp EESCTTTCSCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EcChhhhcCCHHHHHHHHHHHcCC-CCEEEEEe
Confidence 876654322234555566666776 55777754
No 171
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=67.84 E-value=16 Score=29.21 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=52.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccc---cc-----ccC-C--cceeecCCCCCCch--HhhcccccEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMR---FE-----QYG-S--DFAFYDYNQPQDLP--LELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~R---F~-----~~g-~--~FvfYDyn~P~~lp--~~lk~~fD~Vv 175 (209)
++.+|+=|||=+=+. .|....+..+++.+|++.. +. ..| . +|+.-|.. +++ ..+.++||+|+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAE---TFGQRKDVRESYDIVT 146 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHH---HHTTCTTTTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHH---HhcccccccCCccEEE
Confidence 467999999874332 2333356678999999982 22 122 1 23333321 122 11246899999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
++. +.. +..+...+..++++ ++.+++..|
T Consensus 147 ~~~-~~~---~~~~l~~~~~~Lkp-gG~l~~~~g 175 (240)
T 1xdz_A 147 ARA-VAR---LSVLSELCLPLVKK-NGLFVALKA 175 (240)
T ss_dssp EEC-CSC---HHHHHHHHGGGEEE-EEEEEEEEC
T ss_pred Eec-cCC---HHHHHHHHHHhcCC-CCEEEEEeC
Confidence 887 222 34555666666676 456776544
No 172
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=67.74 E-value=25 Score=28.92 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=55.2
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC---C-cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG---S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g---~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .+.+..+ .+++.+|++.... ..| . +|+.-|+.. + .++||+|++
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~----~~~fD~v~~ 143 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---F----DEPVDRIVS 143 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---C----CCCCSEEEE
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH---c----CCCccEEEE
Confidence 577999999975333 3333323 6799999986432 222 1 355555532 2 578999998
Q ss_pred CCCCCC---------HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLS---------KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFls---------eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-..+.. .+-+..+-..+..+++| ++++++.+
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 183 (302)
T 3hem_A 144 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPD-DGRMLLHT 183 (302)
T ss_dssp ESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT-TCEEEEEE
T ss_pred cchHHhcCccccccchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 655422 23346677777788887 56777653
No 173
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=67.33 E-value=11 Score=28.83 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc----C-C--cceeecCCCCCCchHhh
Q 028404 97 AETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY----G-S--DFAFYDYNQPQDLPLEL 167 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~----g-~--~FvfYDyn~P~~lp~~l 167 (209)
...+.+.+.... ++.+|+=|||=+=.. .|.+. +.+++.+|++...... + . +|+.-|.... + .
T Consensus 34 ~~~~~~~l~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~---~ 104 (218)
T 3ou2_A 34 APAALERLRAGN--IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--T---P 104 (218)
T ss_dssp HHHHHHHHTTTT--SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--C---C
T ss_pred HHHHHHHHhcCC--CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--C---C
Confidence 555666655442 567999999875333 34443 4589999998744322 2 1 5666666544 2 2
Q ss_pred cccccEEEECCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 168 KHAFSVVVVDPPY--LSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 168 k~~fD~Vv~DPPF--lseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++||+|++.--+ +..+-+.++-..+..++++ ++++++++
T Consensus 105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 146 (218)
T 3ou2_A 105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAP-GGVVEFVD 146 (218)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 4689999986532 3343235566666667776 45676653
No 174
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=65.37 E-value=2.4 Score=36.16 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=12.8
Q ss_pred ccccEEEECCCCCCH
Q 028404 169 HAFSVVVVDPPYLSK 183 (209)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (209)
.+||+|++||||-..
T Consensus 163 ~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHK 177 (258)
T ss_dssp SCCSEEEECCCCCCC
T ss_pred ccCCEEEEcCCCCCc
Confidence 469999999999764
No 175
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=65.28 E-value=8.1 Score=30.72 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=50.6
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccc--------ccCC--cceeecCCCCCCchHhh-cccccEEEEC
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYGS--DFAFYDYNQPQDLPLEL-KHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~--------~~g~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~D 177 (209)
++.+|+=|||=+=+.. |.+ ....+++.+|++.... ..+. +|+.=|..+ +...+ .++||+|++|
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~---~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED---VAPTLPDGHFDGILYD 135 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH---HGGGSCTTCEEEEEEC
T ss_pred CCCeEEEEeccCCHHHHHHHh-cCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHH---hhcccCCCceEEEEEC
Confidence 5789999999865553 333 2223788999987542 2222 233323221 11112 3689999995
Q ss_pred C-----CCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 P-----PYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 P-----PFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
. |.....-.+.+-..++.++|+ +++++++
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~Lkp-gG~l~~~ 169 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKP-GGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEE-EEEEEEC
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCC-CeEEEEE
Confidence 1 222222233445556667777 5567765
No 176
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=65.25 E-value=59 Score=27.04 Aligned_cols=86 Identities=8% Similarity=0.018 Sum_probs=55.7
Q ss_pred CeEEEEeCchHH--HHHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 113 SRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 113 ~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
.+|+=|||=+=. ..|.+..|+.+++.+|+ .... ..| + +|+..|+.+| +| ++||+|++--
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~----~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE--VP----SNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC--CC----SSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC--CC----CCCCEEEEch
Confidence 799999998543 34555567788999998 5332 111 2 5777787665 34 4699988765
Q ss_pred CC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 PY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 PF--ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+ .+ ++| .++-..++.++++ +++||+.
T Consensus 242 vl~~~~~~~~-~~~l~~~~~~L~p-gG~l~i~ 271 (334)
T 2ip2_A 242 IIGDLDEAAS-LRLLGNCREAMAG-DGRVVVI 271 (334)
T ss_dssp CGGGCCHHHH-HHHHHHHHHHSCT-TCEEEEE
T ss_pred hccCCCHHHH-HHHHHHHHHhcCC-CCEEEEE
Confidence 54 23 444 4555556666676 5678775
No 177
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=64.52 E-value=1.7 Score=34.67 Aligned_cols=96 Identities=9% Similarity=-0.075 Sum_probs=52.3
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------C-------------------------------
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G------------------------------- 149 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g------------------------------- 149 (209)
++.+|+=|||=+-... +..... .+++.+|+....-.. +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 5678999998642221 222121 378899998654321 1
Q ss_pred -C-cceeecCCCCCCchHhhcccccEEEECCCCC----CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 150 -S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL----SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 150 -~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl----seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
- +|+.-|..++..++....++||+||+---+- ..+-..++-..+..+++| ++.||+++
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~ 198 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP-GGFLVMVD 198 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC-CcEEEEEe
Confidence 1 4566676654333332236899998743222 222234444555566676 55777653
No 178
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=64.16 E-value=16 Score=31.53 Aligned_cols=86 Identities=10% Similarity=0.027 Sum_probs=52.6
Q ss_pred CCCeEEEEeC--------chHHHHHHhhCC-CCCceEEeecccccccCCcc-eeecCCCCCCchHhhcccccEEEECCCC
Q 028404 111 SDSRVACIAC--------PTLYAYLKKIRP-EVSPKILEYDMRFEQYGSDF-AFYDYNQPQDLPLELKHAFSVVVVDPPY 180 (209)
Q Consensus 111 ~~~rIaclst--------PSly~~Lk~~~~-~~~~~LLE~D~RF~~~g~~F-vfYDyn~P~~lp~~lk~~fD~Vv~DPPF 180 (209)
++.+|+=||| =+ ..+.+..+ +.+++-+|+... .-+-+| +.=|..++. +.++||+|++|++.
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--v~~v~~~i~gD~~~~~-----~~~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--VSDADSTLIGDCATVH-----TANKWDLIISDMYD 133 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--BCSSSEEEESCGGGCC-----CSSCEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--CCCCEEEEECccccCC-----ccCcccEEEEcCCc
Confidence 5779999999 45 22333334 467888888876 112256 666765431 12689999999753
Q ss_pred CC-----------HHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 181 LS-----------KECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 181 ls-----------eec~~K~A~Tik~L~k~~~~kiil 206 (209)
.. .+.++.+...+..++|+ ++++++
T Consensus 134 ~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp-GG~~v~ 169 (290)
T 2xyq_A 134 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL-GGSIAV 169 (290)
T ss_dssp CC---CCSCCCCCCTHHHHHHHHHHHHEEE-EEEEEE
T ss_pred cccccccccccchHHHHHHHHHHHHHhcCC-CcEEEE
Confidence 21 23345555666667776 456665
No 179
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=63.81 E-value=14 Score=33.97 Aligned_cols=103 Identities=10% Similarity=0.086 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCCCc
Q 028404 98 ETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDL 163 (209)
Q Consensus 98 ~~La~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~~l 163 (209)
+.+.+.+++... .++.+|+-|||=+=.. .+.+ .+..+++.+|++. +....| + +|+.=|+.+. .+
T Consensus 144 ~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~ 221 (480)
T 3b3j_A 144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SL 221 (480)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-CC
T ss_pred HHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-cc
Confidence 334555554332 1568999999986333 3333 3556899999986 222222 2 4666666541 12
Q ss_pred hHhhcccccEEEECCCC---CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 164 PLELKHAFSVVVVDPPY---LSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPF---lseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++||+||+.||+ ..++.++.+.. ++.++++ ++.++++.
T Consensus 222 ----~~~fD~Ivs~~~~~~~~~e~~~~~l~~-~~~~Lkp-gG~li~~~ 263 (480)
T 3b3j_A 222 ----PEQVDIIISEPMGYMLFNERMLESYLH-AKKYLKP-SGNMFPTI 263 (480)
T ss_dssp ----SSCEEEEECCCCHHHHTCHHHHHHHHH-GGGGEEE-EEEEESCE
T ss_pred ----CCCeEEEEEeCchHhcCcHHHHHHHHH-HHHhcCC-CCEEEEEe
Confidence 3579999999993 23555555543 3445565 45666543
No 180
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=63.74 E-value=16 Score=30.35 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=56.6
Q ss_pred cccccc-cccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-C------cce
Q 028404 84 DWRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-S------DFA 153 (209)
Q Consensus 84 DwqlSQ-FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-~------~Fv 153 (209)
...+.| |.-+...++.|++.+.-. ++.+|+=|||=+=.. .|.+. +..+++.+|+|.+...+. . +++
T Consensus 6 ~k~~GQnfl~d~~i~~~iv~~~~~~---~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i 81 (249)
T 3ftd_A 6 KKSFGQHLLVSEGVLKKIAEELNIE---EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVI 81 (249)
T ss_dssp --CCCSSCEECHHHHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEE
T ss_pred CCcccccccCCHHHHHHHHHhcCCC---CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEE
Confidence 456788 777777888887766322 567899999986544 34332 346899999999886542 1 233
Q ss_pred eecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 154 FYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
.=|..+- .++. +.+.+ +||.+|||--
T Consensus 82 ~~D~~~~-~~~~-~~~~~-~vv~NlPy~i 107 (249)
T 3ftd_A 82 NEDASKF-PFCS-LGKEL-KVVGNLPYNV 107 (249)
T ss_dssp CSCTTTC-CGGG-SCSSE-EEEEECCTTT
T ss_pred EcchhhC-ChhH-ccCCc-EEEEECchhc
Confidence 3343221 1222 22233 8999999954
No 181
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=63.58 E-value=9 Score=30.38 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=57.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .+.+..+. +++.+|++..... .| + .|+.-|... +| .-.++||+|++
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~-~~~~~fD~v~~ 120 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN---LP-FQNEELDLIWS 120 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CS-SCTTCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh---CC-CCCCCEEEEEe
Confidence 567999999985444 34444443 8999999874432 22 1 466666633 22 11368999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.-.+...+ ..++-..+..+++| +++|++.+
T Consensus 121 ~~~l~~~~-~~~~l~~~~~~L~p-gG~l~~~~ 150 (257)
T 3f4k_A 121 EGAIYNIG-FERGMNEWSKYLKK-GGFIAVSE 150 (257)
T ss_dssp ESCSCCCC-HHHHHHHHHTTEEE-EEEEEEEE
T ss_pred cChHhhcC-HHHHHHHHHHHcCC-CcEEEEEE
Confidence 87665543 35556666667777 55777653
No 182
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=62.97 E-value=7.1 Score=30.40 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccc--------ccC--CcceeecCCCCCCc
Q 028404 96 TAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFE--------QYG--SDFAFYDYNQPQDL 163 (209)
Q Consensus 96 Ta~~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~--------~~g--~~FvfYDyn~P~~l 163 (209)
-.+.+.+.+..... ++.+|+=|||=+ +-..|.+. +.+++.+|++.... ..+ -.|+.-|... +
T Consensus 23 ~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~ 96 (246)
T 1y8c_A 23 WSDFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN---L 96 (246)
T ss_dssp HHHHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG---C
T ss_pred HHHHHHHHHHHhCC-CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc---C
Confidence 34555555544322 568999998864 33344443 35788999876432 222 1344444432 2
Q ss_pred hHhhcccccEEEECC-C--CC-CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 164 PLELKHAFSVVVVDP-P--YL-SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 164 p~~lk~~fD~Vv~DP-P--Fl-seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
| +.++||+|++.. . ++ +.+-..++-..++.++++ ++++|+.
T Consensus 97 ~--~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 141 (246)
T 1y8c_A 97 N--INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE-GGVFIFD 141 (246)
T ss_dssp C--CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEE-EEEEEEE
T ss_pred C--ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCC-CcEEEEE
Confidence 2 236899999987 3 44 334445666666667776 5567664
No 183
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=62.87 E-value=73 Score=27.32 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=60.4
Q ss_pred HHHHHhhcC-CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCCCchHh
Q 028404 101 AQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLE 166 (209)
Q Consensus 101 a~~l~~~a~-~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~~lp~~ 166 (209)
+..+++... .+..+|+=|||=+=.. .|.+..|+.+++.+|+.. ++...| + +|+..|+..| +|.
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~p~- 267 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET--IPD- 267 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC--CCS-
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC--CCC-
Confidence 444554432 2568999999985443 455557888899999822 232222 2 6788888755 443
Q ss_pred hcccccEEEECCCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 167 LKHAFSVVVVDPPY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 167 lk~~fD~Vv~DPPF--ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.||+|++=--+ .+ ++| .++-..++.+++| +++||+.
T Consensus 268 ---~~D~v~~~~vlh~~~d~~~-~~~L~~~~~~L~p-gG~l~i~ 306 (369)
T 3gwz_A 268 ---GADVYLIKHVLHDWDDDDV-VRILRRIATAMKP-DSRLLVI 306 (369)
T ss_dssp ---SCSEEEEESCGGGSCHHHH-HHHHHHHHTTCCT-TCEEEEE
T ss_pred ---CceEEEhhhhhccCCHHHH-HHHHHHHHHHcCC-CCEEEEE
Confidence 69988874432 23 334 3555556666677 5688775
No 184
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=62.65 E-value=19 Score=28.90 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=59.6
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cccC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .+.+. +..+++.+|++... ...| + +|+.-|+.+. .++ .++||+|++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~---~~~fD~i~~ 120 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-PFR---NEELDLIWS 120 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCC---TTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-CCC---CCCEEEEEE
Confidence 578999999985444 33343 55689999998753 2222 1 5677777542 122 368999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-.++-..+ ..++-..+..++++ +++|++.+
T Consensus 121 ~~~~~~~~-~~~~l~~~~~~Lkp-gG~l~~~~ 150 (267)
T 3kkz_A 121 EGAIYNIG-FERGLNEWRKYLKK-GGYLAVSE 150 (267)
T ss_dssp SSCGGGTC-HHHHHHHHGGGEEE-EEEEEEEE
T ss_pred cCCceecC-HHHHHHHHHHHcCC-CCEEEEEE
Confidence 88876553 45666667777777 55777654
No 185
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=62.49 E-value=7.8 Score=29.95 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCCeEEEEeCch--HHHHHHhh-CCCCCceEEeeccc--------ccccC--C-cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPT--LYAYLKKI-RPEVSPKILEYDMR--------FEQYG--S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPS--ly~~Lk~~-~~~~~~~LLE~D~R--------F~~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+ +-..+.+. .|..+++.+|++.. +...+ . .|+.-|..... ++ .++||+|++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~fD~v~~ 112 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-LP---DNTVDFIFM 112 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-SC---SSCEEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-CC---CCCeeEEEe
Confidence 577999999874 23334333 35678999999864 22222 1 45555654321 11 367999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.-.+-.-.-...+-..+..++++ ++++++.
T Consensus 113 ~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 142 (219)
T 3dh0_A 113 AFTFHELSEPLKFLEELKRVAKP-FAYLAII 142 (219)
T ss_dssp ESCGGGCSSHHHHHHHHHHHEEE-EEEEEEE
T ss_pred ehhhhhcCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 76543321124555556666676 4567664
No 186
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=62.23 E-value=8 Score=31.36 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCCeEEEEeCchHH--HHHHh-hCCCCCceEEeecccc--------ccc-C---C--cceeecCCCCCCchHhhcccccE
Q 028404 111 SDSRVACIACPTLY--AYLKK-IRPEVSPKILEYDMRF--------EQY-G---S--DFAFYDYNQPQDLPLELKHAFSV 173 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~-~~~~~~~~LLE~D~RF--------~~~-g---~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (209)
++.+|+=|||=+=. ..|.+ ..|..+++.+|++... ..+ | . +|+.-|..+. .++ .++||+
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~---~~~~D~ 174 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELP---DGSVDR 174 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCC---TTCEEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCC---CCceeE
Confidence 57799999987433 23433 2456789999998643 222 2 1 3444444332 111 357999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 174 VVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 174 Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
|++|+|-. + .+-..+..++++ +++|++.+
T Consensus 175 v~~~~~~~----~-~~l~~~~~~L~p-gG~l~~~~ 203 (280)
T 1i9g_A 175 AVLDMLAP----W-EVLDAVSRLLVA-GGVLMVYV 203 (280)
T ss_dssp EEEESSCG----G-GGHHHHHHHEEE-EEEEEEEE
T ss_pred EEECCcCH----H-HHHHHHHHhCCC-CCEEEEEe
Confidence 99999832 2 223334445555 45666643
No 187
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=61.93 E-value=17 Score=30.14 Aligned_cols=102 Identities=7% Similarity=0.024 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcC-CCCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCC
Q 028404 98 ETVAQEAVSLCS-DSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQD 162 (209)
Q Consensus 98 ~~La~~l~~~a~-~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~ 162 (209)
..+.+.+++... .++.+|+=|||=+=. ..+.+.. +.+++.+|++.... ..| . +|+.-|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--- 151 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--- 151 (318)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH---
Confidence 334455555432 257799999996432 2333322 35899999986432 222 1 344444432
Q ss_pred chHhhcccccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 163 LPLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFl--seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+| ++||+|++--.+- +.+-..++-..+..++++ +++|++.+
T Consensus 152 ~~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 194 (318)
T 2fk8_A 152 FA----EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA-DGRMTVQS 194 (318)
T ss_dssp CC----CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred CC----CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 33 7899999876652 223345666667777787 56777653
No 188
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=61.66 E-value=17 Score=30.73 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=49.8
Q ss_pred CCCeEEEEeCchHHHH--HHhh-CCCCCceEEeeccccc--------ccC------------C--cceeecCCCCC-Cch
Q 028404 111 SDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFE--------QYG------------S--DFAFYDYNQPQ-DLP 164 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~RF~--------~~g------------~--~FvfYDyn~P~-~lp 164 (209)
++.+|+=|||=+=+.. +.+. .+..+++-+|++..+. .+| . +|+.-|..+.. .++
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 6789999999875543 3333 4557899999987432 111 1 34455554421 122
Q ss_pred HhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 165 LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 165 ~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++||+|++|+|--.. +...+..++++ ++.|++.+
T Consensus 185 ---~~~fD~V~~~~~~~~~-----~l~~~~~~Lkp-gG~lv~~~ 219 (336)
T 2b25_A 185 ---SLTFDAVALDMLNPHV-----TLPVFYPHLKH-GGVCAVYV 219 (336)
T ss_dssp ------EEEEEECSSSTTT-----THHHHGGGEEE-EEEEEEEE
T ss_pred ---CCCeeEEEECCCCHHH-----HHHHHHHhcCC-CcEEEEEe
Confidence 2579999999875322 22334445555 45666543
No 189
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=61.62 E-value=28 Score=27.18 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=63.8
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cc------------c
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQ------------Y 148 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~------------~ 148 (209)
|...+.-..|.+.+..+...++.+|+-|||=+=+. .|.+. +.+++-+|+...- .. +
T Consensus 2 w~~~~~~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 79 (203)
T 1pjz_A 2 SHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 79 (203)
T ss_dssp -CCSSSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred CCcccCCHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccc
Confidence 55555555666666554322578999999984433 34333 3478888887521 11 1
Q ss_pred --CC-cceeecCCCCCCchHhhcccccEEEECCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 149 --GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPY--LSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 149 --g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPF--lseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+. +|+.-|..+ +|..-.++||+|++=--| +..+-..++...+..++|| ++++++.
T Consensus 80 ~~~~v~~~~~d~~~---l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp-gG~~~l~ 139 (203)
T 1pjz_A 80 AAPGIEIWCGDFFA---LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ-ACSGLLI 139 (203)
T ss_dssp ECSSSEEEEECCSS---STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS-EEEEEEE
T ss_pred cCCccEEEECcccc---CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 11 566667654 332212689999853222 2334345677778888888 5674443
No 190
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=61.46 E-value=55 Score=27.75 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=55.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
+..+|+=|||=+=.. .|.+..|+.+++.+|+ .... ..| + +|+..|+.++ .+| .+|+|++
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-----~~D~v~~ 262 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-SYP-----EADAVLF 262 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-CCC-----CCSEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-CCC-----CCCEEEE
Confidence 568999999985443 4555577888999998 5332 111 1 5777777654 233 2398887
Q ss_pred CCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 177 DPPY--LSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 177 DPPF--lseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
--.+ ...+-..++-..++.++++ +++||++
T Consensus 263 ~~vlh~~~d~~~~~~l~~~~~~L~p-gG~l~i~ 294 (359)
T 1x19_A 263 CRILYSANEQLSTIMCKKAFDAMRS-GGRLLIL 294 (359)
T ss_dssp ESCGGGSCHHHHHHHHHHHHTTCCT-TCEEEEE
T ss_pred echhccCCHHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 6554 3433235555666666776 5678765
No 191
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=61.21 E-value=5.6 Score=35.54 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=49.5
Q ss_pred cccccccChHH--HHHHHHHHHhhcCCCCCeEEEEeCchHHHHHH--hhCCCCCceEEeeccccccc-------------
Q 028404 86 RLSQFWYDAVT--AETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQY------------- 148 (209)
Q Consensus 86 qlSQFWYSd~T--a~~La~~l~~~a~~~~~rIaclstPSly~~Lk--~~~~~~~~~LLE~D~RF~~~------------- 148 (209)
+-+.-||.... .+.+.-.++... .+.+|+=++|=|=...|. +..+..+++..|+|..-...
T Consensus 22 ~~~~~F~np~~~~nr~l~~~~l~~~--~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~ 99 (378)
T 2dul_A 22 YDSPVFYNPRMALNRDIVVVLLNIL--NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 99 (378)
T ss_dssp ---CCCCCGGGHHHHHHHHHHHHHH--CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCC
T ss_pred CCCCceeCCchHHHHHHHHHHHHHc--CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 33566775433 333433333333 467888777765444332 22345579999999754211
Q ss_pred ----------C-C--cceeecCCCCCCchHhhcccccEEEECCCCCCHH
Q 028404 149 ----------G-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (209)
Q Consensus 149 ----------g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (209)
| . +++.-|.+. +...+.+.||+|++|||+...+
T Consensus 100 ~~~~~~~~~~gl~~i~v~~~Da~~---~~~~~~~~fD~I~lDP~~~~~~ 145 (378)
T 2dul_A 100 RESKGRAILKGEKTIVINHDDANR---LMAERHRYFHFIDLDPFGSPME 145 (378)
T ss_dssp EECSSEEEEESSSEEEEEESCHHH---HHHHSTTCEEEEEECCSSCCHH
T ss_pred ccccccccccCCCceEEEcCcHHH---HHHhccCCCCEEEeCCCCCHHH
Confidence 1 0 222233321 2222345799999999865454
No 192
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=61.15 E-value=29 Score=27.94 Aligned_cols=92 Identities=17% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCeEEEEeCchHHHHHHhhCCCCCceEEeecccccccC----C-cceeecCCCCCCchHhhcccccEEEECCCCCCHHH
Q 028404 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYG----S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKEC 185 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk~~~~~~~~~LLE~D~RF~~~g----~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec 185 (209)
++.+|+=|||=+=...+.-..++.+++-+|++...-... . +|+.-|.... .++ .++||+|++--.+..-.-
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~-~~~---~~~fD~v~~~~~l~~~~~ 109 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENL-ALP---DKSVDGVISILAIHHFSH 109 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSC-CSC---TTCBSEEEEESCGGGCSS
T ss_pred CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhC-CCC---CCCEeEEEEcchHhhccC
Confidence 678999999986544332223667899999987554331 1 4666665431 122 368999988765533222
Q ss_pred HHHHHHHHHHhcCCCCCcEEEec
Q 028404 186 LEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 186 ~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+.++-..+..++| + +++++.+
T Consensus 110 ~~~~l~~~~~~Lk-g-G~~~~~~ 130 (261)
T 3ege_A 110 LEKSFQEMQRIIR-D-GTIVLLT 130 (261)
T ss_dssp HHHHHHHHHHHBC-S-SCEEEEE
T ss_pred HHHHHHHHHHHhC-C-cEEEEEE
Confidence 3444455555556 3 4566543
No 193
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=61.05 E-value=9.5 Score=33.04 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=56.5
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++++|+=|||=+=... +.+ .+..+++-+|++. +....| + .|+.=|..+. .+| .++||+||++
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~-~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~---~~~fD~Iis~ 140 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELP---VEKVDIIISE 140 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHH-TTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCS---SSCEEEEEEC
T ss_pred CCCEEEEEeccchHHHHHHHH-CCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCC---CCceEEEEEc
Confidence 5789999999864433 333 2445899999984 122222 1 4555555432 222 3689999999
Q ss_pred CC---CCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 178 PP---YLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 178 PP---Flseec~~K~A~Tik~L~k~~~~kiil 206 (209)
++ +..+..+..+...+..++++ ++.+|.
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~r~Lkp-gG~li~ 171 (349)
T 3q7e_A 141 WMGYCLFYESMLNTVLHARDKWLAP-DGLIFP 171 (349)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEE-EEEEES
T ss_pred cccccccCchhHHHHHHHHHHhCCC-CCEEcc
Confidence 86 33456677777777777777 455553
No 194
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=60.78 E-value=4.5 Score=36.64 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=45.3
Q ss_pred ccccc--ChHHHHHHHHHHHhhcC---CCCCeEEEEeCchHHHHHHh--hCCC-CCceEEeeccccccc--------C-C
Q 028404 88 SQFWY--DAVTAETVAQEAVSLCS---DSDSRVACIACPTLYAYLKK--IRPE-VSPKILEYDMRFEQY--------G-S 150 (209)
Q Consensus 88 SQFWY--Sd~Ta~~La~~l~~~a~---~~~~rIaclstPSly~~Lk~--~~~~-~~~~LLE~D~RF~~~--------g-~ 150 (209)
...|| +.+..+.+...++.... .++.+|+=+.|=|=...|.- ...+ .+++..|++.+=... | +
T Consensus 24 ~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~ 103 (392)
T 3axs_A 24 MPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP 103 (392)
T ss_dssp CCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 45666 44555555433322211 03567887777654443321 1222 468888888642211 1 1
Q ss_pred c--ceeecCCCCCCchH-hhcccccEEEECCCCCC
Q 028404 151 D--FAFYDYNQPQDLPL-ELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 151 ~--FvfYDyn~P~~lp~-~lk~~fD~Vv~DPPFls 182 (209)
+ ..++.-. ..++.. .+.++||+|++|| |++
T Consensus 104 ~~~v~v~~~D-a~~~l~~~~~~~fD~V~lDP-~g~ 136 (392)
T 3axs_A 104 EDRYEIHGME-ANFFLRKEWGFGFDYVDLDP-FGT 136 (392)
T ss_dssp GGGEEEECSC-HHHHHHSCCSSCEEEEEECC-SSC
T ss_pred CceEEEEeCC-HHHHHHHhhCCCCcEEEECC-CcC
Confidence 1 2222111 011122 2345799999999 665
No 195
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=60.73 E-value=17 Score=28.04 Aligned_cols=102 Identities=6% Similarity=-0.011 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----C-C-cceeecCCCCCCchHhh
Q 028404 97 AETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----G-S-DFAFYDYNQPQDLPLEL 167 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g-~-~FvfYDyn~P~~lp~~l 167 (209)
.+.+.+.+.... ++.+|+=|||=+=.. .|.+. ..+++-+|++...-.. . . +|+.-|..+. + .
T Consensus 30 ~~~~~~~l~~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~--~---~ 100 (250)
T 2p7i_A 30 HPFMVRAFTPFF--RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA--Q---L 100 (250)
T ss_dssp HHHHHHHHGGGC--CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC--C---C
T ss_pred HHHHHHHHHhhc--CCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc--C---c
Confidence 344555555443 567899999975443 34332 3478999998754211 1 1 4555555443 1 2
Q ss_pred cccccEEEECCCCCCHHHHHHHHHHHH-HhcCCCCCcEEEec
Q 028404 168 KHAFSVVVVDPPYLSKECLEKVSETVS-FLARPGDSKLLLLT 208 (209)
Q Consensus 168 k~~fD~Vv~DPPFlseec~~K~A~Tik-~L~k~~~~kiilcT 208 (209)
.++||+|++-=-+-.-.-..++-..++ .++++ +++|++.+
T Consensus 101 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~Lkp-gG~l~i~~ 141 (250)
T 2p7i_A 101 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAE-GGRLFLVC 141 (250)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCC-CCEEEEEc
Confidence 467998887211100000134444555 66666 55777654
No 196
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=60.53 E-value=2.8 Score=31.76 Aligned_cols=89 Identities=9% Similarity=0.146 Sum_probs=53.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc--------cC--C-cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG--S-DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~--------~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||=+=.. .|.+. +.+++.+|++..... .+ . +|+.-|... +| +.++||+|++.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~--~~~~~D~v~~~ 104 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN---LT--FDRQYDFILST 104 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG---CC--CCCCEEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh---CC--CCCCceEEEEc
Confidence 567999999875333 34332 458999999864321 11 1 344445433 22 15789999988
Q ss_pred CCCC--CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPYL--SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPFl--seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.++- ..+-..++-..+..++++ ++++++.
T Consensus 105 ~~l~~~~~~~~~~~l~~~~~~L~~-gG~l~~~ 135 (199)
T 2xvm_A 105 VVLMFLEAKTIPGLIANMQRCTKP-GGYNLIV 135 (199)
T ss_dssp SCGGGSCGGGHHHHHHHHHHTEEE-EEEEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 7654 333345666667777777 5566554
No 197
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=60.10 E-value=17 Score=32.59 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=51.0
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHH------HHHHhhC---------CCCCceEEeecccccc-
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLY------AYLKKIR---------PEVSPKILEYDMRFEQ- 147 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly------~~Lk~~~---------~~~~~~LLE~D~RF~~- 147 (209)
....-||+-...-++.+++.+.-. .+.+|+=.+|=|=. ..+++.. +..+++-.|+|.+-..
T Consensus 147 ~~~~G~fyTP~~v~~~mv~~l~~~---~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~l 223 (445)
T 2okc_A 147 KSGAGQYFTPRPLIQAMVDCINPQ---MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTL 223 (445)
T ss_dssp TTCCGGGCCCHHHHHHHHHHHCCC---TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHH
T ss_pred cccCCcccCcHHHHHHHHHHhCCC---CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHH
Confidence 345668876666666666654321 45677766665422 2222111 2357889999874321
Q ss_pred -------cC-----CcceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 148 -------YG-----SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 148 -------~g-----~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
.| .+++.-|.-.. + ...+||+||+.|||+..
T Consensus 224 A~~nl~l~g~~~~~~~i~~gD~l~~---~--~~~~fD~Iv~NPPf~~~ 266 (445)
T 2okc_A 224 ASMNLYLHGIGTDRSPIVCEDSLEK---E--PSTLVDVILANPPFGTR 266 (445)
T ss_dssp HHHHHHHTTCCSSCCSEEECCTTTS---C--CSSCEEEEEECCCSSCC
T ss_pred HHHHHHHhCCCcCCCCEeeCCCCCC---c--ccCCcCEEEECCCCCCc
Confidence 12 13344443221 1 12479999999999964
No 198
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=59.12 E-value=23 Score=30.04 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc--------cccccC---C-cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM--------RFEQYG---S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~--------RF~~~g---~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
+..+|+=|||=+=.. .|.+..|+.+++.+|+ . ++...| . +|+.-|+.+| +| ..||+|++
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~----~~~D~v~~ 254 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--LP----VTADVVLL 254 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CS----CCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc--CC----CCCCEEEE
Confidence 568999999985443 4555567778888887 4 222222 1 5777787654 44 24999998
Q ss_pred CCCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 177 DPPY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 177 DPPF--ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
-..+ .. ++|. ++-..++.++++ +++||++
T Consensus 255 ~~vl~~~~~~~~~-~~l~~~~~~L~p-gG~l~i~ 286 (374)
T 1qzz_A 255 SFVLLNWSDEDAL-TILRGCVRALEP-GGRLLVL 286 (374)
T ss_dssp ESCGGGSCHHHHH-HHHHHHHHHEEE-EEEEEEE
T ss_pred eccccCCCHHHHH-HHHHHHHHhcCC-CcEEEEE
Confidence 7654 23 3443 444455555666 4577764
No 199
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=58.25 E-value=17 Score=36.88 Aligned_cols=96 Identities=17% Similarity=0.057 Sum_probs=50.3
Q ss_pred cccccccccChHHHHHHHHHHHhhcC---CCCCeEEEEeC--chHHHHHHhhCC---CCCceEEeecccccc--------
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCS---DSDSRVACIAC--PTLYAYLKKIRP---EVSPKILEYDMRFEQ-------- 147 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~---~~~~rIaclst--PSly~~Lk~~~~---~~~~~LLE~D~RF~~-------- 147 (209)
....-||+=..+.+..+++.+..... .++.+|+=.|| =++...+.+..+ ..+++-.|+|.+-..
T Consensus 291 Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL 370 (878)
T 3s1s_A 291 RGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGL 370 (878)
T ss_dssp CCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHT
T ss_pred CCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHH
Confidence 34456665555666666666222211 13557764444 455555544332 347889999985321
Q ss_pred ------cCCc---ceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 148 ------YGSD---FAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 148 ------~g~~---FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+|-. ...-|+..|. ....++||+||+.|||+.
T Consensus 371 ~lN~LlhGi~~~~I~~dD~L~~~---~~~~~kFDVVIgNPPYg~ 411 (878)
T 3s1s_A 371 LFPQLVSSNNAPTITGEDVCSLN---PEDFANVSVVVMNPPYVS 411 (878)
T ss_dssp TSTTTCBTTBCCEEECCCGGGCC---GGGGTTEEEEEECCBCCS
T ss_pred HHhhhhcCCCcceEEecchhccc---ccccCCCCEEEECCCccc
Confidence 1111 1111222221 122467999999999965
No 200
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=57.81 E-value=44 Score=24.12 Aligned_cols=88 Identities=11% Similarity=0.000 Sum_probs=52.9
Q ss_pred CCeEEEEeCchH----HHHHHhhCCCCCceEEeecccc-c---ccCCcceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 112 DSRVACIACPTL----YAYLKKIRPEVSPKILEYDMRF-E---QYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 112 ~~rIaclstPSl----y~~Lk~~~~~~~~~LLE~D~RF-~---~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
.++|+.+|+=.+ ...|.+ .+.+++++|.|..- . ..|-.++.-|...|..+...--..+|+||+=.| +.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~--~~ 81 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS--DD 81 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS--CH
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC--CH
Confidence 458999998643 334443 25689999988632 2 223356666777664333221245898877666 55
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEE
Q 028404 184 ECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 184 ec~~K~A~Tik~L~k~~~~kiil 206 (209)
+-...++.++|.+... +||.
T Consensus 82 ~~n~~~~~~a~~~~~~---~iia 101 (141)
T 3llv_A 82 EFNLKILKALRSVSDV---YAIV 101 (141)
T ss_dssp HHHHHHHHHHHHHCCC---CEEE
T ss_pred HHHHHHHHHHHHhCCc---eEEE
Confidence 5456677778877632 5554
No 201
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=57.67 E-value=7.7 Score=32.71 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=52.8
Q ss_pred ccccccccc-ChHHHHHHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccccc--------C--C
Q 028404 84 DWRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY--------G--S 150 (209)
Q Consensus 84 DwqlSQFWY-Sd~Ta~~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~--------g--~ 150 (209)
+..+.|.|. ++..++.+++.+.-. ++.+|+=|||=+ +-..|.+. ..+++.+|+|.+.... | +
T Consensus 3 ~k~~gq~fl~d~~i~~~i~~~~~~~---~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 77 (285)
T 1zq9_A 3 NTGIGQHILKNPLIINSIIDKAALR---PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVAS 77 (285)
T ss_dssp -----CCEECCHHHHHHHHHHTCCC---TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGG
T ss_pred CCCCCcCccCCHHHHHHHHHhcCCC---CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 345677665 777777777765321 567899898873 33344443 3489999999865321 1 1
Q ss_pred --cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 151 --DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 151 --~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+|+.-|..+. .+| +||+|++++||--
T Consensus 78 ~v~~~~~D~~~~-~~~-----~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 78 KLQVLVGDVLKT-DLP-----FFDTCVANLPYQI 105 (285)
T ss_dssp GEEEEESCTTTS-CCC-----CCSEEEEECCGGG
T ss_pred ceEEEEcceecc-cch-----hhcEEEEecCccc
Confidence 3455555431 122 6999999999965
No 202
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=57.58 E-value=7.9 Score=31.48 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=53.1
Q ss_pred ccccc-cccChHHHHHHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeecccccccCC---------cc
Q 028404 85 WRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYGS---------DF 152 (209)
Q Consensus 85 wqlSQ-FWYSd~Ta~~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~g~---------~F 152 (209)
..+.| |.-+...++.+++.+.- . ++.+|+=|||=+ +-..|.+.. .+++.+|+|.+...+.. +|
T Consensus 5 k~~gq~fl~~~~~~~~i~~~~~~--~-~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~ 79 (245)
T 1yub_A 5 IKYSQNFLTSEKVLNQIIKQLNL--K-ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTL 79 (245)
T ss_dssp CCSCCCBCCCTTTHHHHHHHCCC--C-SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEE
T ss_pred cccCCCCCCCHHHHHHHHHhcCC--C-CCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEE
Confidence 45778 56666677777765521 1 567888888763 223343332 57999999987654421 33
Q ss_pred eeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+.=|+.+- .++. .++| .||++|||.-
T Consensus 80 ~~~D~~~~-~~~~--~~~f-~vv~n~Py~~ 105 (245)
T 1yub_A 80 IHQDILQF-QFPN--KQRY-KIVGNIPYHL 105 (245)
T ss_dssp CCSCCTTT-TCCC--SSEE-EEEEECCSSS
T ss_pred EECChhhc-Cccc--CCCc-EEEEeCCccc
Confidence 44444321 1111 2468 8999999975
No 203
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=57.56 E-value=12 Score=31.37 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=52.2
Q ss_pred cccccccc-ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccccC-------C--cc
Q 028404 85 WRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYG-------S--DF 152 (209)
Q Consensus 85 wqlSQFWY-Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~g-------~--~F 152 (209)
..+.|-|. +...++.|++.+.-. ++.+|+=|||=+=+ ..|.+. ..+++.+|+|.++..+. + ++
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~~~~v~~ 79 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIHPQ---KTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQKNITI 79 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHCCC---TTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTTCTTEEE
T ss_pred CcCCcccccCHHHHHHHHHhcCCC---CcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhhCCCcEE
Confidence 45778444 566777777766322 56789988887433 344442 35899999999875431 1 34
Q ss_pred eeecCCCCCCchHhh-cccccEEEECCCCC
Q 028404 153 AFYDYNQPQDLPLEL-KHAFSVVVVDPPYL 181 (209)
Q Consensus 153 vfYDyn~P~~lp~~l-k~~fD~Vv~DPPFl 181 (209)
+.=|..+- .++... .+.|| ||..|||-
T Consensus 80 i~~D~~~~-~~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 80 YQNDALQF-DFSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp EESCTTTC-CGGGSCCSSCEE-EEEECCHH
T ss_pred EEcchHhC-CHHHhccCCCeE-EEecCCcc
Confidence 44444321 122222 24577 99999994
No 204
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=57.21 E-value=17 Score=30.18 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=62.9
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccc--------ccc----------CC
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRF--------EQY----------GS 150 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF--------~~~----------g~ 150 (209)
|.....+..+++.+..... +..+|+=|||=+=. ..+.+ .+..+++.+|++... ... .-
T Consensus 15 ~~k~~l~~~~~~~l~~~~~-~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 92 (313)
T 3bgv_A 15 WMKSVLIGEFLEKVRQKKK-RDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSA 92 (313)
T ss_dssp HHHHHHHHHHHHHHHHTC---CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEE
T ss_pred HHHHHHHHHHHHHhhhccC-CCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceE
Confidence 4444555555555544322 56799999997432 33443 345688999998642 211 11
Q ss_pred cceeecCCCCCCchHhh---cccccEEEECCCC----CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 151 DFAFYDYNQPQDLPLEL---KHAFSVVVVDPPY----LSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 151 ~FvfYDyn~P~~lp~~l---k~~fD~Vv~DPPF----lseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+|+.-|..... +...+ .++||+|++--.+ .+.+-...+-..+..++++ ++.+|++|
T Consensus 93 ~~~~~D~~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~ 155 (313)
T 3bgv_A 93 EFITADSSKEL-LIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP-GGYFIGTT 155 (313)
T ss_dssp EEEECCTTTSC-STTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred EEEEecccccc-hhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC-CcEEEEec
Confidence 46666765431 11112 2489999985544 2333344555556666776 55677665
No 205
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=57.00 E-value=28 Score=27.71 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc----cc----cCC-cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF----EQ----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF----~~----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++.+|+=|||=+=+. .|.+..+..+++-+|++.+. .. ... .++.=|...|... ..+.++||+|++|-+
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~-~~~~~~fD~V~~~~~ 135 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY-SGIVEKVDLIYQDIA 135 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT-TTTCCCEEEEEECCC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhh-cccccceeEEEEecc
Confidence 578999999986443 34444444579999999752 11 111 3444466554221 113478999999954
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 180 YLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 180 Flseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.-.. ...+...+..++|+ +++++++
T Consensus 136 ~~~~--~~~~l~~~~r~Lkp-gG~l~i~ 160 (210)
T 1nt2_A 136 QKNQ--IEILKANAEFFLKE-KGEVVIM 160 (210)
T ss_dssp STTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred ChhH--HHHHHHHHHHHhCC-CCEEEEE
Confidence 3322 22334556666776 5577765
No 206
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=56.30 E-value=70 Score=29.25 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=52.5
Q ss_pred CCCeEEEEeCchHHHHH--HhhCCCCCceEEeeccc---------------ccccC---Ccceee---cCCCCCCchHhh
Q 028404 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMR---------------FEQYG---SDFAFY---DYNQPQDLPLEL 167 (209)
Q Consensus 111 ~~~rIaclstPSly~~L--k~~~~~~~~~LLE~D~R---------------F~~~g---~~FvfY---Dyn~P~~lp~~l 167 (209)
++.+|+=|||=+=+..+ .+..+..+++-+|++.. ...+| ++..+. ++..+..++. .
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~-~ 320 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE-L 320 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH-H
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc-c
Confidence 57899999998665543 33334457888888763 22233 223222 3333322221 2
Q ss_pred cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 168 k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.++||+|++.......+....+. .+...+++ |++|++.
T Consensus 321 ~~~FDvIvvn~~l~~~d~~~~L~-el~r~LKp-GG~lVi~ 358 (433)
T 1u2z_A 321 IPQCDVILVNNFLFDEDLNKKVE-KILQTAKV-GCKIISL 358 (433)
T ss_dssp GGGCSEEEECCTTCCHHHHHHHH-HHHTTCCT-TCEEEES
T ss_pred cCCCCEEEEeCccccccHHHHHH-HHHHhCCC-CeEEEEe
Confidence 46899999986555565444343 34444555 5667664
No 207
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=55.99 E-value=50 Score=27.42 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=57.1
Q ss_pred CCCeEEEEeCch-----HHHHHHhhCCCCCceEEeecccc--------cccCC-cceeecCCCCCCc---h---Hhhc-c
Q 028404 111 SDSRVACIACPT-----LYAYLKKIRPEVSPKILEYDMRF--------EQYGS-DFAFYDYNQPQDL---P---LELK-H 169 (209)
Q Consensus 111 ~~~rIaclstPS-----ly~~Lk~~~~~~~~~LLE~D~RF--------~~~g~-~FvfYDyn~P~~l---p---~~lk-~ 169 (209)
+..+|+=|||=+ +...+.+..|+.+++.+|+|... ...+. +|+.-|+..|..+ | ..+. .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457899998754 55566666788899999998643 21122 6788888765322 1 1232 3
Q ss_pred cccEEEECC--CCCCH-HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 170 AFSVVVVDP--PYLSK-ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 170 ~fD~Vv~DP--PFlse-ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+||+|++== -|+.. +. ..+-..+.-.+++ ++.|++++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~-~~~l~~~~~~L~p-GG~l~i~~ 196 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVV-DRVVGAYRDALAP-GSYLFMTS 196 (274)
T ss_dssp SCCEEEETTTGGGSCTTTH-HHHHHHHHHHSCT-TCEEEEEE
T ss_pred CCEEEEEechhhhCCcHHH-HHHHHHHHHhCCC-CcEEEEEE
Confidence 689888642 12232 23 3444555555666 56777763
No 208
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=55.39 E-value=86 Score=29.21 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=65.3
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecc-----------cc----cccC---C
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDM-----------RF----EQYG---S 150 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~-----------RF----~~~g---~ 150 (209)
-|-+-....+...+..+.-.++.+|+=|||=+=-.. +....+..+++=+|++. +| ..+| +
T Consensus 153 vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~ 232 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 232 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred ccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344444444444443332236789998998743332 22223444699999984 11 2222 2
Q ss_pred --cceeecCCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 151 --DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 151 --~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+|+.=|+.++ .++.. -..+|+|++-+++...+-...+.+-. ..+|+ |++||++
T Consensus 233 rVefi~GD~~~l-p~~d~-~~~aDVVf~Nn~~F~pdl~~aL~Ei~-RvLKP-GGrIVss 287 (438)
T 3uwp_A 233 EYTLERGDFLSE-EWRER-IANTSVIFVNNFAFGPEVDHQLKERF-ANMKE-GGRIVSS 287 (438)
T ss_dssp EEEEEECCTTSH-HHHHH-HHTCSEEEECCTTCCHHHHHHHHHHH-TTSCT-TCEEEES
T ss_pred CeEEEECcccCC-ccccc-cCCccEEEEcccccCchHHHHHHHHH-HcCCC-CcEEEEe
Confidence 5666677653 12222 24699999999988877666666544 45566 6678765
No 209
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=55.15 E-value=20 Score=31.34 Aligned_cols=102 Identities=8% Similarity=0.008 Sum_probs=57.9
Q ss_pred HHHHHHHHhhcC-CCCCeEEEEeCchHHHH--HHhhCCCCCceEEeecccc--------cccC--C--cceeecCCCCCC
Q 028404 98 ETVAQEAVSLCS-DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQD 162 (209)
Q Consensus 98 ~~La~~l~~~a~-~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF--------~~~g--~--~FvfYDyn~P~~ 162 (209)
..+.+.+.+... .++.+|+-|||=+=... +.+. ...+++.+|.+ .. ...| + .|+.=|..+. .
T Consensus 49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 125 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI-S 125 (376)
T ss_dssp HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC-C
T ss_pred HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc-C
Confidence 334445544321 25789999999864332 2232 23489999998 42 2221 1 3444444321 1
Q ss_pred chHhhcccccEEEECC-CC-CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 163 LPLELKHAFSVVVVDP-PY-LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 163 lp~~lk~~fD~Vv~DP-PF-ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+ .++||+||+++ ++ +. +..+..+-..+..++++ ++.||++
T Consensus 126 ~----~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkp-gG~li~~ 168 (376)
T 3r0q_C 126 L----PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKP-TGVMYPS 168 (376)
T ss_dssp C----SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEE-EEEEESS
T ss_pred c----CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCC-CeEEEEe
Confidence 2 27899999998 33 32 24456677777677777 4556554
No 210
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=54.86 E-value=27 Score=28.64 Aligned_cols=104 Identities=9% Similarity=0.016 Sum_probs=60.9
Q ss_pred HHHHHHhhcCCCCCeEEEEeCchHHHH--HHhh-CCCCCceEEeeccccccc-----------CC--cceeecCCCCCCc
Q 028404 100 VAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFEQY-----------GS--DFAFYDYNQPQDL 163 (209)
Q Consensus 100 La~~l~~~a~~~~~rIaclstPSly~~--Lk~~-~~~~~~~LLE~D~RF~~~-----------g~--~FvfYDyn~P~~l 163 (209)
+.+.+......++.+|+=|||=+=... |.+. .+..+++.+|++..+-.. .. +|+.-|..+.. +
T Consensus 25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~ 103 (299)
T 3g5t_A 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK-F 103 (299)
T ss_dssp HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG-G
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC-c
Confidence 334444433226789999999865543 3333 367789999998754321 11 56666765421 1
Q ss_pred hH--hh-cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 164 PL--EL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 164 p~--~l-k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
+. .+ .++||+|++--.+-.-+ ..++-..++.++++ ++.|++
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~Lkp-gG~l~i 147 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWFD-FEKFQRSAYANLRK-DGTIAI 147 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGSC-HHHHHHHHHHHEEE-EEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHhC-HHHHHHHHHHhcCC-CcEEEE
Confidence 11 11 36899999876543333 35556666667776 456665
No 211
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=54.83 E-value=5 Score=33.81 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=37.0
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeecc-------ccc--------ccC--C--cceeecCCCCCCchHhhc-
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDM-------RFE--------QYG--S--DFAFYDYNQPQDLPLELK- 168 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~-------RF~--------~~g--~--~FvfYDyn~P~~lp~~lk- 168 (209)
++.+|+=++|=+=... |... +.+++.+|++. .-- ..+ . .|+.=|..+ +...+.
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~---~l~~~~~ 157 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE---QMPALVK 157 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH---HHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH---HHHhhhc
Confidence 4568887777644433 2222 45899999998 211 111 1 233333321 112233
Q ss_pred --ccccEEEECCCCCCH
Q 028404 169 --HAFSVVVVDPPYLSK 183 (209)
Q Consensus 169 --~~fD~Vv~DPPFlse 183 (209)
++||+|++||||-..
T Consensus 158 ~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHCCCSEEEECCCC---
T ss_pred cCCCccEEEECCCCCCc
Confidence 689999999999753
No 212
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=54.78 E-value=83 Score=26.60 Aligned_cols=88 Identities=11% Similarity=0.157 Sum_probs=53.9
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-----ccccc--CC--cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-----RFEQY--GS--DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-----RF~~~--g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
+..+|+=|||=+=.. .|.+..|+.+++.+|+.. |.... .+ +|+..|+..| +| +||+|++=--
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~p-----~~D~v~~~~v 256 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLRE--VP-----HADVHVLKRI 256 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTC--CC-----CCSEEEEESC
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCC--CC-----CCcEEEEehh
Confidence 467899999875433 455557777788888743 22212 12 6788888754 45 7998887433
Q ss_pred C--C-CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 180 Y--L-SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 180 F--l-seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+ . .++|. ++-.-++.+++| +++||+.
T Consensus 257 lh~~~d~~~~-~~L~~~~~~Lkp-gG~l~i~ 285 (348)
T 3lst_A 257 LHNWGDEDSV-RILTNCRRVMPA-HGRVLVI 285 (348)
T ss_dssp GGGSCHHHHH-HHHHHHHHTCCT-TCEEEEE
T ss_pred ccCCCHHHHH-HHHHHHHHhcCC-CCEEEEE
Confidence 2 2 24443 444455566676 5688775
No 213
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=53.78 E-value=40 Score=28.46 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=52.8
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-------cccccC---C-cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-------RFEQYG---S-DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-------RF~~~g---~-~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
+..+|+=|||=+=.. .|.+..|+.+++.+|+.. ++...| . +|+.-|+.++ +| ..||+|++-
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~----~~~D~v~~~ 256 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP--LP----RKADAIILS 256 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC--CS----SCEEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC--CC----CCccEEEEc
Confidence 567999999985433 455556666677766511 332222 1 6777787654 34 249999886
Q ss_pred CCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPF--ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
-.+ .. ++|. ++-..++.++++ +++||++
T Consensus 257 ~vl~~~~~~~~~-~~l~~~~~~L~p-gG~l~i~ 287 (360)
T 1tw3_A 257 FVLLNWPDHDAV-RILTRCAEALEP-GGRILIH 287 (360)
T ss_dssp SCGGGSCHHHHH-HHHHHHHHTEEE-EEEEEEE
T ss_pred ccccCCCHHHHH-HHHHHHHHhcCC-CcEEEEE
Confidence 664 23 4443 344444555565 5677765
No 214
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=53.12 E-value=57 Score=27.24 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
+..+|+=|||=+=.. .|.+..|+.+++.+|+.. ++...+ + +|+..|+..| +|. .||+|++=
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~p~----~~D~v~~~ 242 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP--LPA----GAGGYVLS 242 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CCC----SCSEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC--CCC----CCcEEEEe
Confidence 357999999985444 455557888889988722 232222 2 6788888755 443 69988863
Q ss_pred CCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPF--ls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
=-+ .. ++|. ++-..++.+++| +++|++.
T Consensus 243 ~vlh~~~~~~~~-~~l~~~~~~L~p-gG~l~i~ 273 (332)
T 3i53_A 243 AVLHDWDDLSAV-AILRRCAEAAGS-GGVVLVI 273 (332)
T ss_dssp SCGGGSCHHHHH-HHHHHHHHHHTT-TCEEEEE
T ss_pred hhhccCCHHHHH-HHHHHHHHhcCC-CCEEEEE
Confidence 222 23 3454 444444555566 5688775
No 215
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=52.92 E-value=42 Score=28.58 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=52.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||=+=.. .+.+ .+..+++.+|.+. ++...| + .|+.-|..+. .+| .++||+||++
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~---~~~~D~Ivs~ 112 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAK-HGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-HLP---FPKVDIIISE 112 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCS---SSCEEEEEEC
T ss_pred CCCEEEEecCccHHHHHHHHH-CCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc-cCC---CCcccEEEEe
Confidence 568999999986333 2333 2345799999983 111111 1 3455454432 122 2679999999
Q ss_pred CCCC---CHHHHHHHHHHHHHhcCCCCCcEE
Q 028404 178 PPYL---SKECLEKVSETVSFLARPGDSKLL 205 (209)
Q Consensus 178 PPFl---seec~~K~A~Tik~L~k~~~~kii 205 (209)
|+.. .+..+..+...++.++++ +++||
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~li 142 (328)
T 1g6q_1 113 WMGYFLLYESMMDTVLYARDHYLVE-GGLIF 142 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEE-EEEEE
T ss_pred CchhhcccHHHHHHHHHHHHhhcCC-CeEEE
Confidence 9732 344455666667677777 45565
No 216
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=52.66 E-value=15 Score=32.14 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCCCeEEEEeCc--hHHHHHHhhCCCCCceEEeecccc
Q 028404 99 TVAQEAVSLCSDSDSRVACIACP--TLYAYLKKIRPEVSPKILEYDMRF 145 (209)
Q Consensus 99 ~La~~l~~~a~~~~~rIaclstP--Sly~~Lk~~~~~~~~~LLE~D~RF 145 (209)
.|+...+-... +.++|++||-= ++-..+.+..+..++.+.|+|..-
T Consensus 72 ~l~h~~l~~~p-~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~V 119 (294)
T 3o4f_A 72 MMTHVPLLAHG-HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGV 119 (294)
T ss_dssp HHHHHHHHHSS-CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHH
T ss_pred HHHHHHHhhCC-CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHH
Confidence 45544443333 67899999875 333334332345689999999853
No 217
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=52.00 E-value=53 Score=25.74 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----C--C-cceeecCCCCCCchHhh--cccccEEEECC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----G--S-DFAFYDYNQPQDLPLEL--KHAFSVVVVDP 178 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g--~-~FvfYDyn~P~~lp~~l--k~~fD~Vv~DP 178 (209)
++.+|+=|||=+=+. .|.+..+ +++-+|++...-.. + . +|+.-|...+. .+..+ ...||+|++.-
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPE-QAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHH-HHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccc-cccccccccCccEEEEcc
Confidence 678999999985444 3333333 89999998754322 1 1 56666766532 22222 24599999876
Q ss_pred CCC--CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 PYL--SKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 PFl--seec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+- ..+-..++-..+..++++ +++|+++
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 162 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGK-QGAMYLI 162 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTT-TCEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence 543 332345666667777777 5566664
No 218
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=51.62 E-value=21 Score=29.64 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=25.1
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccc
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR 144 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~R 144 (209)
.+.+|+-|||=+=+.. |.+..+..+++-+|+|..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~ 81 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSR 81 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHH
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHH
Confidence 4689999999865543 444456678999999874
No 219
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=51.45 E-value=23 Score=27.86 Aligned_cols=108 Identities=15% Similarity=0.002 Sum_probs=61.3
Q ss_pred cChHHHHHHHHHHHh---hcCCCCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccccc--------CC--cceeec
Q 028404 92 YDAVTAETVAQEAVS---LCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY--------GS--DFAFYD 156 (209)
Q Consensus 92 YSd~Ta~~La~~l~~---~a~~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~--------g~--~FvfYD 156 (209)
|.......+++.+.. ... ++.+|+=|||=+=. ..|.+. +.+++.+|++...... .. .|+.-|
T Consensus 18 ~~~~~~~~~~~~l~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d 94 (263)
T 2yqz_A 18 HPPEVAGQIATAMASAVHPKG-EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQAD 94 (263)
T ss_dssp CCHHHHHHHHHHHHHHCCCSS-SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESC
T ss_pred cChHHHHHHHHHHHHhhcCCC-CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcc
Confidence 456667777777744 222 57899999987432 334332 4578999998643221 11 455555
Q ss_pred CCCCCCchHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 157 YNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
... +| .-.++||+|++--.+-.-.-...+-..+..++++ ++.|++.
T Consensus 95 ~~~---~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~~~ 140 (263)
T 2yqz_A 95 ARA---IP-LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKP-GGALLEG 140 (263)
T ss_dssp TTS---CC-SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEE-EEEEEEE
T ss_pred ccc---CC-CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCC-CcEEEEE
Confidence 532 22 1136799998865433211124455555666676 4566654
No 220
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=49.26 E-value=53 Score=27.58 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=55.7
Q ss_pred CCeEEEEeCchHH--HHHHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCCCchHhhcccccEEEECC
Q 028404 112 DSRVACIACPTLY--AYLKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (209)
Q Consensus 112 ~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (209)
..+|+=|||=+=. ..|.+..|..+++.+|+.. ++...+ + +|+..|+.++.. .+.+.||+|++=-
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARN---FEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG---GTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcc---cCCCCccEEEEec
Confidence 6799999988543 3455557888899998843 233332 1 577778765421 1345699888744
Q ss_pred CC--CCH-HHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 179 PY--LSK-ECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 179 PF--lse-ec~~K~A~Tik~L~k~~~~kiilc 207 (209)
-+ .+. +| .++-..++.++++ +++||+.
T Consensus 257 vlh~~~~~~~-~~~l~~~~~~L~p-gG~l~i~ 286 (352)
T 3mcz_A 257 CLHYFDAREA-REVIGHAAGLVKP-GGALLIL 286 (352)
T ss_dssp CGGGSCHHHH-HHHHHHHHHTEEE-EEEEEEE
T ss_pred ccccCCHHHH-HHHHHHHHHHcCC-CCEEEEE
Confidence 33 233 45 4444555555566 5677764
No 221
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=49.22 E-value=6.6 Score=36.73 Aligned_cols=95 Identities=17% Similarity=-0.005 Sum_probs=47.2
Q ss_pred ccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCch------HHHHHHhhCC--------------CCCceEEeeccc
Q 028404 85 WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT------LYAYLKKIRP--------------EVSPKILEYDMR 144 (209)
Q Consensus 85 wqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPS------ly~~Lk~~~~--------------~~~~~LLE~D~R 144 (209)
...-||+-...-++.+++.+.-. .+.+|+=.+|=| ++..+++... ..+++-.|+|.+
T Consensus 146 ~~~G~fyTP~~iv~~mv~~l~p~---~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~ 222 (541)
T 2ar0_A 146 SGAGQYFTPRPLIKTIIHLLKPQ---PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 222 (541)
T ss_dssp ----CCCCCHHHHHHHHHHHCCC---TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred ccCCeeeCCHHHHHHHHHHhccC---CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence 45677765555556666554221 456777666654 2233332221 236888999874
Q ss_pred ccc--------cCCc------ceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 145 FEQ--------YGSD------FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 145 F~~--------~g~~------FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
-.. .|-. ..++--+ -+..+..-.++||+||++|||+..
T Consensus 223 ~~~lA~~nl~l~gi~~~~~~~~~I~~gD-tL~~~~~~~~~fD~Vv~NPPf~~~ 274 (541)
T 2ar0_A 223 TRRLALMNCLLHDIEGNLDHGGAIRLGN-TLGSDGENLPKAHIVATNPPFGSA 274 (541)
T ss_dssp HHHHHHHHHHTTTCCCBGGGTBSEEESC-TTSHHHHTSCCEEEEEECCCCTTC
T ss_pred HHHHHHHHHHHhCCCccccccCCeEeCC-CcccccccccCCeEEEECCCcccc
Confidence 321 1211 1122111 111121223579999999999864
No 222
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=48.34 E-value=24 Score=30.42 Aligned_cols=90 Identities=10% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccc-------ccccC--C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMR-------FEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~R-------F~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+-|||=+=.. .+.+ .+..+++-+|.+.. +...| + +++.=|+.+- . +.++||+||+.
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~----~~~~~D~Ivs~ 123 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-S----LPEQVDIIISE 123 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-C----CSSCEEEEEEC
T ss_pred CcCEEEEcCCCccHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-C----CCCceeEEEEe
Confidence 578999999986333 3333 24458999999851 11111 1 3455555431 1 23679999999
Q ss_pred CCCC---CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 178 PPYL---SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 178 PPFl---seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+++. .+..++-+.. ++.++++ ++.+|+++
T Consensus 124 ~~~~~~~~~~~~~~l~~-~~~~Lkp-gG~li~~~ 155 (348)
T 2y1w_A 124 PMGYMLFNERMLESYLH-AKKYLKP-SGNMFPTI 155 (348)
T ss_dssp CCBTTBTTTSHHHHHHH-GGGGEEE-EEEEESCE
T ss_pred CchhcCChHHHHHHHHH-HHhhcCC-CeEEEEec
Confidence 9864 3444444444 3455566 45676553
No 223
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=48.26 E-value=18 Score=29.09 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHHHHHHHhhcC-CCCCeEEEEeCchHH--HHHHhhCCCCCceEEeecccccc--------cC-C--cceeecCCCCCCc
Q 028404 98 ETVAQEAVSLCS-DSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQDL 163 (209)
Q Consensus 98 ~~La~~l~~~a~-~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~--------~g-~--~FvfYDyn~P~~l 163 (209)
..+.+.+..... .++.+|+=|||=+=. ..+.+..|..+++.+|++..... .| + .|+.-|.... .+
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~ 101 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL-PF 101 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC-CS
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC-CC
Confidence 344444444331 257899999997533 34555567788999999864322 22 1 4555555431 12
Q ss_pred hHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+ .++||+|++.-.+..-.-...+-..++.++++ ++.|++.
T Consensus 102 ~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~~~ 141 (276)
T 3mgg_A 102 E---DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKP-GGTITVI 141 (276)
T ss_dssp C---TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE-EEEEEEE
T ss_pred C---CCCeeEEEEechhhhcCCHHHHHHHHHHHcCC-CcEEEEE
Confidence 2 36899999865543221123555666677777 4566664
No 224
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=48.05 E-value=16 Score=29.25 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=57.5
Q ss_pred cccccChHHHHHHHHHHHhhcCCCCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccc--------ccC-C--ccee
Q 028404 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAF 154 (209)
Q Consensus 88 SQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~Fvf 154 (209)
|.-.++......|++.+... ++.+|+=|||=+=. ..|.+.. .+++.+|++.... ..| + .|+.
T Consensus 17 s~~~~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~ 91 (260)
T 1vl5_A 17 SQIHAKGSDLAKLMQIAALK---GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ 91 (260)
T ss_dssp ------CCCHHHHHHHHTCC---SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CccccCHHHHHHHHHHhCCC---CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEE
Confidence 33444555566677665322 57899999997533 3444433 3889999876332 222 1 4666
Q ss_pred ecCCCCCCchHhhcccccEEEECCCCCC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 155 YDYNQPQDLPLELKHAFSVVVVDPPYLS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
-|.... .++ .++||+|++--.+-. .+ ...+-..++.+++| +++|+++
T Consensus 92 ~d~~~l-~~~---~~~fD~V~~~~~l~~~~d-~~~~l~~~~r~Lkp-gG~l~~~ 139 (260)
T 1vl5_A 92 GDAEQM-PFT---DERFHIVTCRIAAHHFPN-PASFVSEAYRVLKK-GGQLLLV 139 (260)
T ss_dssp CCC-CC-CSC---TTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEE-EEEEEEE
T ss_pred ecHHhC-CCC---CCCEEEEEEhhhhHhcCC-HHHHHHHHHHHcCC-CCEEEEE
Confidence 666441 122 268998887532211 11 13444455566666 4567664
No 225
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=46.51 E-value=26 Score=27.62 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc-----CC-cceeecCCCCCCchH
Q 028404 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-----GS-DFAFYDYNQPQDLPL 165 (209)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~-----g~-~FvfYDyn~P~~lp~ 165 (209)
..+...+...+..... ++.+|+=|||=+=+.. |.+. +.+++-+|++...... +. +|+.-|..++ +|-
T Consensus 32 ~~~~~l~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~--~~~ 106 (226)
T 3m33_A 32 PDPELTFDLWLSRLLT-PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGE--LPA 106 (226)
T ss_dssp SCTTHHHHHHHHHHCC-TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSS--CCT
T ss_pred CCHHHHHHHHHHhcCC-CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhc--cCC
Confidence 3333333333333333 6789999999865553 3332 4589999998754322 22 6777777544 333
Q ss_pred hhcccccEEEECC
Q 028404 166 ELKHAFSVVVVDP 178 (209)
Q Consensus 166 ~lk~~fD~Vv~DP 178 (209)
.+.++||+|++.+
T Consensus 107 ~~~~~fD~v~~~~ 119 (226)
T 3m33_A 107 GLGAPFGLIVSRR 119 (226)
T ss_dssp TCCCCEEEEEEES
T ss_pred cCCCCEEEEEeCC
Confidence 3357899999864
No 226
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=46.19 E-value=86 Score=26.85 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=52.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecc-------cccccC--C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~-------RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||=+=.. .+.+ .+..+++.+|++. ++...| + .|+.-|..+. .+| .++||+||++
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~-~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~---~~~~D~Ivs~ 138 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLP---VEKVDVIISE 138 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCS---CSCEEEEEEC
T ss_pred CCCEEEEeeccCcHHHHHHHH-cCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCC---CCcEEEEEEc
Confidence 578999999986333 3333 2335799999984 122121 2 3444454331 122 2689999999
Q ss_pred C-CCC--CHHHHHHHHHHHHHhcCCCCCcEE
Q 028404 178 P-PYL--SKECLEKVSETVSFLARPGDSKLL 205 (209)
Q Consensus 178 P-PFl--seec~~K~A~Tik~L~k~~~~kii 205 (209)
+ +|. .+.-+..+-..++.++++ +++||
T Consensus 139 ~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~li 168 (340)
T 2fyt_A 139 WMGYFLLFESMLDSVLYAKNKYLAK-GGSVY 168 (340)
T ss_dssp CCBTTBTTTCHHHHHHHHHHHHEEE-EEEEE
T ss_pred CchhhccCHHHHHHHHHHHHhhcCC-CcEEE
Confidence 8 443 344455666667777777 45565
No 227
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=45.82 E-value=1.3e+02 Score=25.07 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=51.0
Q ss_pred ccChHHHHHHHHHHHhhcCCCCCeEEEEeCc--hHHHHHHhh--------CCCCCceEEee------------------c
Q 028404 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACP--TLYAYLKKI--------RPEVSPKILEY------------------D 142 (209)
Q Consensus 91 WYSd~Ta~~La~~l~~~a~~~~~rIaclstP--Sly~~Lk~~--------~~~~~~~LLE~------------------D 142 (209)
+|..+....|++.+.+..+ ..+|.+.+.= .+...++-. .++.++++++- .
T Consensus 74 ~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 151 (395)
T 3nx3_A 74 LYYNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQ 151 (395)
T ss_dssp TSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred ccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccc
Confidence 4667888888888887763 3566665442 244433321 12334444321 1
Q ss_pred ccccccCCcceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 143 MRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 143 ~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
..|...+.++.+++++.++.|.+.+....-+|++.|++.+
T Consensus 152 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~ 191 (395)
T 3nx3_A 152 KPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGE 191 (395)
T ss_dssp GGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECT
T ss_pred cccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCC
Confidence 1122222367777777766665556655669999998754
No 228
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=45.70 E-value=8.9 Score=35.79 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=13.0
Q ss_pred ccccEEEECCCCCCH
Q 028404 169 HAFSVVVVDPPYLSK 183 (209)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (209)
.+||+||+.|||+..
T Consensus 301 ~~fD~Il~NPPf~~~ 315 (530)
T 3ufb_A 301 DRVDVILTNPPFGGE 315 (530)
T ss_dssp GCBSEEEECCCSSCB
T ss_pred ccceEEEecCCCCcc
Confidence 479999999999853
No 229
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=44.67 E-value=1e+02 Score=26.52 Aligned_cols=87 Identities=8% Similarity=0.049 Sum_probs=53.2
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc----cCC-cceeecCCCCCCchHhhcccccEEEECCCC--C
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPY--L 181 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPF--l 181 (209)
+..+|+=|||=+=.. .|.+..|+.+++++|+ ...-. .+. +|+..|+.+| +|. + |+|++-=-+ .
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--~p~---~--D~v~~~~vlh~~ 272 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFKE--VPS---G--DTILMKWILHDW 272 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTC--CCC---C--SEEEEESCGGGS
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCCC--CCC---C--CEEEehHHhccC
Confidence 468999999875443 5555678888999998 32221 112 7888898775 452 2 877762221 1
Q ss_pred C-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 182 S-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 182 s-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+ ++|..-+ .-++..++| +++||+.
T Consensus 273 ~d~~~~~~L-~~~~~~L~p-gG~l~i~ 297 (364)
T 3p9c_A 273 SDQHCATLL-KNCYDALPA-HGKVVLV 297 (364)
T ss_dssp CHHHHHHHH-HHHHHHSCT-TCEEEEE
T ss_pred CHHHHHHHH-HHHHHHcCC-CCEEEEE
Confidence 2 5564444 444555566 5688774
No 230
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=43.98 E-value=1.2e+02 Score=25.80 Aligned_cols=97 Identities=7% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHhhcC--CCCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccccc----CC-cceeecCCCCCCchHhhcccc
Q 028404 101 AQEAVSLCS--DSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY----GS-DFAFYDYNQPQDLPLELKHAF 171 (209)
Q Consensus 101 a~~l~~~a~--~~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~----g~-~FvfYDyn~P~~lp~~lk~~f 171 (209)
+..+++... .+..+|+=|||=+=. ..|.+..|..+++.+|+ ...-.. +. +|+..|+.+| +|. |
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~--~~~-----~ 268 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFAS--VPQ-----G 268 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTC--CCC-----E
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCcccC--CCC-----C
Confidence 344444432 246799999988533 34555577778888887 433222 22 6778888765 442 8
Q ss_pred cEEEECCCC---CCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 172 SVVVVDPPY---LSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 172 D~Vv~DPPF---lseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
|+|++==-+ -.++|. ++-..++.+++| +++||++
T Consensus 269 D~v~~~~~lh~~~d~~~~-~~l~~~~~~L~p-gG~l~i~ 305 (372)
T 1fp1_D 269 DAMILKAVCHNWSDEKCI-EFLSNCHKALSP-NGKVIIV 305 (372)
T ss_dssp EEEEEESSGGGSCHHHHH-HHHHHHHHHEEE-EEEEEEE
T ss_pred CEEEEecccccCCHHHHH-HHHHHHHHhcCC-CCEEEEE
Confidence 988863332 124454 344444455565 4677775
No 231
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=43.78 E-value=82 Score=28.21 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=62.7
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEEe--CchHHHHH----Hhh-CCCCCceEEe---eccc------------
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIA--CPTLYAYL----KKI-RPEVSPKILE---YDMR------------ 144 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIacls--tPSly~~L----k~~-~~~~~~~LLE---~D~R------------ 144 (209)
-+.|-|++.+...|-+.+.+..+ ..-+++. ++|-..++ ... .|+..+++.+ |+.-
T Consensus 65 ~~gy~y~~~~~~~Le~~lA~l~g---~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 141 (427)
T 3i16_A 65 SSGYGYGDIGRDSLDAVYARVFN---TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNM 141 (427)
T ss_dssp CCTTCTTCHHHHHHHHHHHHHHT---CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhC---CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchH
Confidence 46788999998888888888754 2223332 45444433 322 4555666655 6532
Q ss_pred --ccccCCcceeecCC-----CCCCchHhhc--ccccEEEECC----CC---CCHHHHHHHHHHHHH
Q 028404 145 --FEQYGSDFAFYDYN-----QPQDLPLELK--HAFSVVVVDP----PY---LSKECLEKVSETVSF 195 (209)
Q Consensus 145 --F~~~g~~FvfYDyn-----~P~~lp~~lk--~~fD~Vv~DP----PF---lseec~~K~A~Tik~ 195 (209)
+..+|-+++++|.+ .+..|.+.++ ....+|++.+ |+ ++..-++++++.++.
T Consensus 142 ~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~ 208 (427)
T 3i16_A 142 GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKN 208 (427)
T ss_dssp CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHH
Confidence 22345577888873 3333444455 5677999998 65 455546666665554
No 232
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=43.17 E-value=33 Score=27.72 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-------------CcceeecCCCCCC
Q 028404 98 ETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-------------SDFAFYDYNQPQD 162 (209)
Q Consensus 98 ~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-------------~~FvfYDyn~P~~ 162 (209)
..|.+.+... ++.+|+=|||=+=.. .|.+. +.+++-+|++...-... .++.+.+- ....
T Consensus 47 ~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-d~~~ 120 (293)
T 3thr_A 47 AWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA-NWLT 120 (293)
T ss_dssp HHHHHHHHHT---TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC-CGGG
T ss_pred HHHHHHhccc---CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeec-Chhh
Confidence 4444444333 568999999986443 33332 44899999986433221 01222221 1223
Q ss_pred chHhh--cccccEEEECC-C-------CCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 163 LPLEL--KHAFSVVVVDP-P-------YLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 163 lp~~l--k~~fD~Vv~DP-P-------Flseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+|..+ .++||+|++-+ - ..+.+-+.++-..+..++++ ++.+++.
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 174 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP-GGLLVID 174 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 44332 46899999862 2 22233356677777777777 5567664
No 233
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=43.04 E-value=16 Score=30.02 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=52.8
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------C-C--cceeecCCCCCCchH--hhcccccEEE
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQDLPL--ELKHAFSVVV 175 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g-~--~FvfYDyn~P~~lp~--~lk~~fD~Vv 175 (209)
++.+|+=|||=+=+.. |....|..+++.+|++...-.+ | . +|+.-|.. +++. ...++||+|+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~---~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAE---VLAREAGHREAYARAV 156 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHH---HHTTSTTTTTCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHH---HhhcccccCCCceEEE
Confidence 4678999988654432 3333577899999999854332 2 1 23332321 1221 2347899999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 176 ~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.= +.. +..+.+.+.-++++ ++++++..|
T Consensus 157 s~a-~~~---~~~ll~~~~~~Lkp-gG~l~~~~g 185 (249)
T 3g89_A 157 ARA-VAP---LCVLSELLLPFLEV-GGAAVAMKG 185 (249)
T ss_dssp EES-SCC---HHHHHHHHGGGEEE-EEEEEEEEC
T ss_pred ECC-cCC---HHHHHHHHHHHcCC-CeEEEEEeC
Confidence 851 111 34555666667776 557777655
No 234
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=42.25 E-value=34 Score=27.05 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=51.1
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC-C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||=+=+. .+.+.. .+++.+|++.... ..| . +|+.-|... +| .-.++||+|++.
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~-~~~~~fD~v~~~ 94 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES---LP-FPDDSFDIITCR 94 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB---CC-SCTTCEEEEEEE
T ss_pred CCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc---CC-CCCCcEEEEEEC
Confidence 678999999976443 343332 3789999886432 122 1 455556543 22 113689999877
Q ss_pred CCCCC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 178 PPYLS-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 178 PPFls-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
-.+.. .+ ..++-..+..++++ ++++++.
T Consensus 95 ~~l~~~~~-~~~~l~~~~~~Lkp-gG~l~~~ 123 (239)
T 1xxl_A 95 YAAHHFSD-VRKAVREVARVLKQ-DGRFLLV 123 (239)
T ss_dssp SCGGGCSC-HHHHHHHHHHHEEE-EEEEEEE
T ss_pred CchhhccC-HHHHHHHHHHHcCC-CcEEEEE
Confidence 44321 12 24455555666676 4567664
No 235
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=42.09 E-value=70 Score=28.35 Aligned_cols=107 Identities=10% Similarity=0.084 Sum_probs=61.8
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEE-eCchHHH----HHHhh-CCCCCceEEe---ecccc------------
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACI-ACPTLYA----YLKKI-RPEVSPKILE---YDMRF------------ 145 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIacl-stPSly~----~Lk~~-~~~~~~~LLE---~D~RF------------ 145 (209)
-+-|-|++.+.+.|.+.+.+..+ .....+. .+.|=+. .+... .|+..+++.+ |+.-.
T Consensus 51 ~~~~~y~~~~~~~Le~~lA~l~g--~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~ 128 (409)
T 3jzl_A 51 STGYGYDDEGRDTLERVYATVFK--TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGS 128 (409)
T ss_dssp CCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSC
T ss_pred CcCCCCChhHHHHHHHHHHHHhC--CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhH
Confidence 56789999999989888887754 2222221 1444333 33332 4555566555 55432
Q ss_pred -cccCCcceeecCC-----CCCCchHhhcccccEEEECC----CC---CCHHHHHHHHHHHHH
Q 028404 146 -EQYGSDFAFYDYN-----QPQDLPLELKHAFSVVVVDP----PY---LSKECLEKVSETVSF 195 (209)
Q Consensus 146 -~~~g~~FvfYDyn-----~P~~lp~~lk~~fD~Vv~DP----PF---lseec~~K~A~Tik~ 195 (209)
..+|-++++.|.. .++.|.+.+.....+|++.. |+ +...-++++++.++.
T Consensus 129 l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~ 191 (409)
T 3jzl_A 129 LKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKN 191 (409)
T ss_dssp TGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHh
Confidence 2345577888873 33334444555567999998 54 455445555555554
No 236
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=41.88 E-value=11 Score=35.52 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=49.5
Q ss_pred cccccccccChHHHHHHHHHHHhhcC-CCCCeEEEEeCc--hHHHHHHhh---CCCCCceEEeecccccc--------cC
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACP--TLYAYLKKI---RPEVSPKILEYDMRFEQ--------YG 149 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~-~~~~rIaclstP--Sly~~Lk~~---~~~~~~~LLE~D~RF~~--------~g 149 (209)
....-||+-..+-++.|++.+..... ..+.+|+=.+|= ++...+.+. ....+++-.|+|..-.. .|
T Consensus 193 ~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g 272 (542)
T 3lkd_A 193 GKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG 272 (542)
T ss_dssp --CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC
Confidence 44566777666667777777663211 134567644433 332222221 12457888899874211 12
Q ss_pred C-----cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 150 S-----DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 150 ~-----~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
- +++.=|.-.. +.|..-..+||+||+.|||+.
T Consensus 273 i~~~~~~I~~gDtL~~-d~p~~~~~~fD~IvaNPPf~~ 309 (542)
T 3lkd_A 273 VPIENQFLHNADTLDE-DWPTQEPTNFDGVLMNPPYSA 309 (542)
T ss_dssp CCGGGEEEEESCTTTS-CSCCSSCCCBSEEEECCCTTC
T ss_pred CCcCccceEecceecc-cccccccccccEEEecCCcCC
Confidence 1 1222222110 012122367999999999985
No 237
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=40.32 E-value=33 Score=27.47 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCch--HHHHHHhhCCCCCceEEeeccccccc----CC--cceeecCCCCCCchHh
Q 028404 95 VTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY----GS--DFAFYDYNQPQDLPLE 166 (209)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~rIaclstPS--ly~~Lk~~~~~~~~~LLE~D~RF~~~----g~--~FvfYDyn~P~~lp~~ 166 (209)
.....+++.+......++.+|+=|||=+ +-..+.+..++.+++.+|++...... +. .|+.-|.... .++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~-- 145 (269)
T 1p91_A 69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL-PFS-- 145 (269)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSC-SBC--
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhC-CCC--
Confidence 3455566666654322678999999864 22344443456689999998765432 11 4555555431 122
Q ss_pred hcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 167 LKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 167 lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.++||+|++-.... -+.+ +..++++ +++|++.|
T Consensus 146 -~~~fD~v~~~~~~~------~l~~-~~~~L~p-gG~l~~~~ 178 (269)
T 1p91_A 146 -DTSMDAIIRIYAPC------KAEE-LARVVKP-GGWVITAT 178 (269)
T ss_dssp -TTCEEEEEEESCCC------CHHH-HHHHEEE-EEEEEEEE
T ss_pred -CCceeEEEEeCChh------hHHH-HHHhcCC-CcEEEEEE
Confidence 36899877632211 1233 4445565 45677654
No 238
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=38.67 E-value=12 Score=35.18 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=12.8
Q ss_pred ccccEEEECCCCCC
Q 028404 169 HAFSVVVVDPPYLS 182 (209)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (209)
.+||+||+.|||+.
T Consensus 328 ~~fD~Iv~NPPf~~ 341 (544)
T 3khk_A 328 LRADFVMTNPPFNM 341 (544)
T ss_dssp CCEEEEEECCCSSC
T ss_pred ccccEEEECCCcCC
Confidence 57999999999996
No 239
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=38.52 E-value=1.9e+02 Score=24.79 Aligned_cols=98 Identities=9% Similarity=0.131 Sum_probs=57.4
Q ss_pred HHHHHhhcC--CCCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccc---cCC-cceeecCCCCCCchHhhccccc
Q 028404 101 AQEAVSLCS--DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ---YGS-DFAFYDYNQPQDLPLELKHAFS 172 (209)
Q Consensus 101 a~~l~~~a~--~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~---~g~-~FvfYDyn~P~~lp~~lk~~fD 172 (209)
+..+++... .+..+|+=|||=+=.. .|.+..|+.+++.+|+-.-... .+. +|+..|+.+| +|. + |
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--~p~---~--D 263 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDG--VPK---G--D 263 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTC--CCC---C--S
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCC--CCC---C--C
Confidence 444554432 2467999999985443 4555578888899888321111 122 6888888765 452 2 8
Q ss_pred EEEECCCCC--C-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 173 VVVVDPPYL--S-KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 173 ~Vv~DPPFl--s-eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+|++-=-+- + ++|. ++-.-++..++| +++||++
T Consensus 264 ~v~~~~vlh~~~~~~~~-~~l~~~~~~L~p-gG~l~i~ 299 (368)
T 3reo_A 264 AIFIKWICHDWSDEHCL-KLLKNCYAALPD-HGKVIVA 299 (368)
T ss_dssp EEEEESCGGGBCHHHHH-HHHHHHHHHSCT-TCEEEEE
T ss_pred EEEEechhhcCCHHHHH-HHHHHHHHHcCC-CCEEEEE
Confidence 777633321 3 4553 444445555566 5688875
No 240
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=38.31 E-value=14 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=13.9
Q ss_pred hh-cccccEEEEC-CCCCCH
Q 028404 166 EL-KHAFSVVVVD-PPYLSK 183 (209)
Q Consensus 166 ~l-k~~fD~Vv~D-PPFlse 183 (209)
.+ +..||+||+| ||.++.
T Consensus 126 ~l~~~~yD~viiD~pp~~~~ 145 (254)
T 3kjh_A 126 ALFLDKKEAVVMDMGAGIEH 145 (254)
T ss_dssp HHHHTCCSEEEEEECTTCTT
T ss_pred HhccCCCCEEEEeCCCcccH
Confidence 34 6789999999 777665
No 241
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=38.16 E-value=43 Score=27.16 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=52.2
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .|.+.. +.+++.+|++.... ..| . +|+.-|+... .++ .++||+|++
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~---~~~fD~v~~ 156 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCE---DNSYDFIWS 156 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSC---TTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCC---CCCEeEEEe
Confidence 578999999974333 333322 34889999986432 111 1 4666666541 122 367998887
Q ss_pred CCCCC-CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYL-SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFl-seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
--.+. -.+ ..++-..++.++++ +++|++.+
T Consensus 157 ~~~l~~~~~-~~~~l~~~~~~Lkp-gG~l~~~~ 187 (297)
T 2o57_A 157 QDAFLHSPD-KLKVFQECARVLKP-RGVMAITD 187 (297)
T ss_dssp ESCGGGCSC-HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cchhhhcCC-HHHHHHHHHHHcCC-CeEEEEEE
Confidence 53322 122 34555566667776 55777653
No 242
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=37.92 E-value=23 Score=27.93 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=53.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccccccC-C--cceeecCCCCCCchHhh-cccccEEEECCCC--CC
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG-S--DFAFYDYNQPQDLPLEL-KHAFSVVVVDPPY--LS 182 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~g-~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~DPPF--ls 182 (209)
++.+|+=|||=+=.. .+.+. +.+++.+|++....... . +|+.-|... +...+ .++||+|++-=-+ +.
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~---~~~~~~~~~fD~i~~~~~l~~~~ 115 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKFNVVKSDAIE---YLKSLPDKYLDGVMISHFVEHLD 115 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTSEEECSCHHH---HHHTSCTTCBSEEEEESCGGGSC
T ss_pred CCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcceeeccHHH---HhhhcCCCCeeEEEECCchhhCC
Confidence 568999999985443 34443 45789999987665442 1 233333322 11112 3689999874332 12
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 183 KECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 183 eec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
.+-+.++-..+..++++ ++++++.+
T Consensus 116 ~~~~~~~l~~~~~~Lkp-gG~l~~~~ 140 (240)
T 3dli_A 116 PERLFELLSLCYSKMKY-SSYIVIES 140 (240)
T ss_dssp GGGHHHHHHHHHHHBCT-TCCEEEEE
T ss_pred cHHHHHHHHHHHHHcCC-CcEEEEEe
Confidence 22245666677777887 55777754
No 243
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=37.64 E-value=1.1e+02 Score=23.95 Aligned_cols=94 Identities=10% Similarity=-0.027 Sum_probs=53.9
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC-C--cceeecCCCCCCchHhh-cccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLEL-KHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .|.+..|+.+++-+|++...- ..| . +|+.-|... ++..+ .++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~---l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT---LTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG---HHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH---HHhhcCcCCcCEEEE
Confidence 457888898875433 344446777899999886332 122 1 455555443 44434 467998876
Q ss_pred ---CCCCCCH-----HHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 ---DPPYLSK-----ECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 ---DPPFlse-----ec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
||-+... .....+...+..++++ ++.|++.|
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkp-gG~l~~~t 153 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGK-GGSIHFKT 153 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTT-SCEEEEEE
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCC-CCEEEEEe
Confidence 4323211 0123444555566676 56788776
No 244
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=37.45 E-value=34 Score=29.11 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=57.3
Q ss_pred Cccccccccccc-ChHHHHHHHHHHHhhcCCCCCeEEEEeCchH--HHHHHhhCCCCCceEEeecccccccC------C-
Q 028404 81 VSEDWRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRFEQYG------S- 150 (209)
Q Consensus 81 ~~EDwqlSQFWY-Sd~Ta~~La~~l~~~a~~~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~RF~~~g------~- 150 (209)
+.-...+.|-|- +...++.|++.+.-. ++ +|+=|||=+= -..|.+. ..+++.+|+|.++..+. +
T Consensus 19 ~~~~k~~GQnfL~d~~i~~~Iv~~~~~~---~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~~~ 92 (271)
T 3fut_A 19 LFADKRFGQNFLVSEAHLRRIVEAARPF---TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSGLP 92 (271)
T ss_dssp CCCSTTSSCCEECCHHHHHHHHHHHCCC---CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTTSS
T ss_pred CCccccCCccccCCHHHHHHHHHhcCCC---CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCCCC
Confidence 344567888555 667777777776322 45 8988887643 3344443 36899999999886531 1
Q ss_pred -cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+++.=|.-+- +++. + ..+|+||..|||--
T Consensus 93 v~vi~~D~l~~-~~~~-~-~~~~~iv~NlPy~i 122 (271)
T 3fut_A 93 VRLVFQDALLY-PWEE-V-PQGSLLVANLPYHI 122 (271)
T ss_dssp EEEEESCGGGS-CGGG-S-CTTEEEEEEECSSC
T ss_pred EEEEECChhhC-Chhh-c-cCccEEEecCcccc
Confidence 2333343211 1111 1 25899999999964
No 245
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=37.11 E-value=16 Score=28.88 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=53.8
Q ss_pred CCCeEEEEeCchHHHHHH--hhCCCCCceEEeeccccc--------ccC-C--cceeecCCCCCCchHhhcccccEEEEC
Q 028404 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (209)
Q Consensus 111 ~~~rIaclstPSly~~Lk--~~~~~~~~~LLE~D~RF~--------~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (209)
++.+|+=|||=+=...+. +.. ..+++.+|++.... ..+ . +|+.-|..... ++ .++||+|++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PE---PDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CC---SSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CC---CCCEEEEEEc
Confidence 368999999986554432 222 34789999986432 221 1 35544543211 11 3579999988
Q ss_pred CC--CCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 178 PP--YLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 178 PP--Flseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-. ++....+.++-..+..++++ +++||+++
T Consensus 154 ~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 185 (241)
T 2ex4_A 154 WVIGHLTDQHLAEFLRRCKGSLRP-NGIIVIKD 185 (241)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCC-CeEEEEEE
Confidence 43 34444345666666677776 55777653
No 246
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=35.98 E-value=30 Score=26.23 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=53.4
Q ss_pred CCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc-----CC-cceeecCCCCCCchHhhcccccEEEECCCCC--
Q 028404 112 DSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL-- 181 (209)
Q Consensus 112 ~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~-----g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl-- 181 (209)
+.+|+=|||=+=.. .|.+. +.+++.+|++...... +. +|+.-|... +| .-.++||+|++.-.+-
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~---~~-~~~~~fD~v~~~~~l~~~ 115 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITD---LS-DSPKRWAGLLAWYSLIHM 115 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGG---GG-GSCCCEEEEEEESSSTTC
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccc---cc-cCCCCeEEEEehhhHhcC
Confidence 57899999985443 34332 4589999998754322 11 455555432 22 1137899999865443
Q ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 182 SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 182 seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
..+-..++-..+..++++ ++++++.+
T Consensus 116 ~~~~~~~~l~~~~~~L~p-gG~l~i~~ 141 (203)
T 3h2b_A 116 GPGELPDALVALRMAVED-GGGLLMSF 141 (203)
T ss_dssp CTTTHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCC-CcEEEEEE
Confidence 222235666666677776 45677653
No 247
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=35.92 E-value=37 Score=23.26 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=18.3
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.+ .+.+.+|........+||+.||
T Consensus 46 ~~~dlii~D~~l~~~~g~-~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 46 RGYDAVFIDLNLPDTSGL-ALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp SCCSEEEEESBCSSSBHH-HHHHHHHHSCCSSCCEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHhhhccCCCCEEEEEC
Confidence 456777777544443332 2233344332112335666554
No 248
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=35.83 E-value=2.1e+02 Score=26.35 Aligned_cols=115 Identities=12% Similarity=0.043 Sum_probs=62.5
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCCCeEEEEeCc---------hHHHHHHhhCCCCCceEEeecccccccCC--cc
Q 028404 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACP---------TLYAYLKKIRPEVSPKILEYDMRFEQYGS--DF 152 (209)
Q Consensus 84 DwqlSQFWYSd~Ta~~La~~l~~~a~~~~~rIaclstP---------Sly~~Lk~~~~~~~~~LLE~D~RF~~~g~--~F 152 (209)
|......||.+--...|.. ... ...+|+=|||= .....+++..|+.+++-+|++..-..... +|
T Consensus 194 DK~~~~h~y~~~Ye~lL~~----l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~f 268 (419)
T 3sso_A 194 PKFGFLHWFTPHYDRHFRD----YRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRT 268 (419)
T ss_dssp TTBSSSCBCHHHHHHHHGG----GTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEE
T ss_pred CcccccchHHHHHHHHHHh----hcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEE
Confidence 3333466665443333322 222 46789888883 22223344457788999999887532222 67
Q ss_pred eeecCCCCCCchHhh---cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 028404 153 AFYDYNQPQDLPLEL---KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 153 vfYDyn~P~~lp~~l---k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiil 206 (209)
+.-|..++ .++..+ .++||+|++|==....+ +.++-..+..++|+ ++.+|+
T Consensus 269 v~GDa~dl-pf~~~l~~~d~sFDlVisdgsH~~~d-~~~aL~el~rvLKP-GGvlVi 322 (419)
T 3sso_A 269 IQGDQNDA-EFLDRIARRYGPFDIVIDDGSHINAH-VRTSFAALFPHVRP-GGLYVI 322 (419)
T ss_dssp EECCTTCH-HHHHHHHHHHCCEEEEEECSCCCHHH-HHHHHHHHGGGEEE-EEEEEE
T ss_pred EEeccccc-chhhhhhcccCCccEEEECCcccchh-HHHHHHHHHHhcCC-CeEEEE
Confidence 77777653 122222 47899999983211122 33444445555666 455655
No 249
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=35.81 E-value=46 Score=26.21 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=19.2
Q ss_pred ceeecCCCCCCchHhhccccc-EEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 152 FAFYDYNQPQDLPLELKHAFS-VVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD-~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
-.+.||..+..+|..+.+.+. +||.|-= ++.+-++ ..++.+.+. +..+|+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~g~m~i~~iSD~H-g~~~~l~---~~l~~~~~~-~~D~ii~~G 60 (190)
T 1s3l_A 7 HHHHDYDIPTTENLYFQGHMKIGIMSDTH-DHLPNIR---KAIEIFNDE-NVETVIHCG 60 (190)
T ss_dssp -------------------CEEEEECCCT-TCHHHHH---HHHHHHHHS-CCSEEEECS
T ss_pred cccccCCCCcccChhhcCCeEEEEEeeCC-CCHHHHH---HHHHHHhhc-CCCEEEECC
Confidence 456788888889988888555 6777876 5554444 334444322 236888887
No 250
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=34.27 E-value=64 Score=22.64 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=23.6
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.++ +.+.++... + ..+||+.||
T Consensus 66 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~~-~-~~~ii~lt~ 103 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELA-AIEKLSRLH-P-GLTCLLVTT 103 (146)
T ss_dssp TTCSEEEEECTTCCHHHHH-HHHHHHHHC-T-TCEEEEEES
T ss_pred CCCCEEEEeCCCCCccHHH-HHHHHHHhC-C-CCcEEEEeC
Confidence 6799999998776665433 333444433 2 346887775
No 251
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.01 E-value=62 Score=22.50 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=20.2
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|- ....+.+ .+...++.... ..+||+.||
T Consensus 47 ~~~dlvi~d~-~~~~~g~-~~~~~l~~~~~--~~pii~ls~ 83 (142)
T 2qxy_A 47 EKIDLVFVDV-FEGEESL-NLIRRIREEFP--DTKVAVLSA 83 (142)
T ss_dssp SCCSEEEEEC-TTTHHHH-HHHHHHHHHCT--TCEEEEEES
T ss_pred cCCCEEEEeC-CCCCcHH-HHHHHHHHHCC--CCCEEEEEC
Confidence 4688999987 4444432 23333443322 346777664
No 252
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=33.94 E-value=52 Score=22.58 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=21.5
Q ss_pred cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 168 k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
...+|+||+|.-....+.++ +...++........+||+.||
T Consensus 45 ~~~~dlvi~d~~l~~~~g~~-~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDGYA-LCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HSCCSEEEECSSCSSSCHHH-HHHHHHHSTTTTTCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCCHHH-HHHHHHhCCccCCCCEEEEeC
Confidence 35688999986655444322 233344322111346777764
No 253
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=33.91 E-value=41 Score=29.18 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=57.5
Q ss_pred CCCeEEEEeCchHHH--HHHhh-CCCCCceEEeeccccccc-------------C----C--cceeecCCCCC-----Cc
Q 028404 111 SDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFEQY-------------G----S--DFAFYDYNQPQ-----DL 163 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~-~~~~~~~LLE~D~RF~~~-------------g----~--~FvfYDyn~P~-----~l 163 (209)
++.+|+=|||=+=.. .|.+. .+..+++.+|++...... | . +|+.-|..... .+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 568999999885443 33333 356789999998643211 1 2 56666665421 12
Q ss_pred hHhhcccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+ .++||+|++...+-...-...+-..+..++|+ +++|++.
T Consensus 163 ~---~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkp-gG~l~i~ 202 (383)
T 4fsd_A 163 P---DSSVDIVISNCVCNLSTNKLALFKEIHRVLRD-GGELYFS 202 (383)
T ss_dssp C---TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE-EEEEEEE
T ss_pred C---CCCEEEEEEccchhcCCCHHHHHHHHHHHcCC-CCEEEEE
Confidence 2 36899999887665422235666666777777 5577765
No 254
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=33.41 E-value=49 Score=23.52 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=19.4
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--....+.+ .+.+.+|......+.+||+.||
T Consensus 58 ~~~dliilD~~l~~~~g~-~~~~~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMTGI-DILKLVKENPHTRRSPVVILTT 97 (152)
T ss_dssp TCBEEEEECSBCSSSBHH-HHHHHHHHSTTTTTSCEEEEES
T ss_pred CCCCEEEEeCCCCCCcHH-HHHHHHHhcccccCCCEEEEec
Confidence 457888888544333332 2233344321112345777664
No 255
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=33.05 E-value=1.3e+02 Score=27.00 Aligned_cols=106 Identities=12% Similarity=0.214 Sum_probs=62.2
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEE--eCchHHHHH----Hhh-CCCCCceEEe---eccc------------
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACI--ACPTLYAYL----KKI-RPEVSPKILE---YDMR------------ 144 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIacl--stPSly~~L----k~~-~~~~~~~LLE---~D~R------------ 144 (209)
-+-|-|.+.+.+.|.+.+.+..+ ..-+++ .++|-..++ ... .|+..+++.+ |+.-
T Consensus 66 ~~gy~Y~~~g~~~Le~~lA~l~g---~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 66 SSGYGYNDIGRDSLDRVYANIFN---TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp CCTTCTTCHHHHHHHHHHHHHHT---CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred CcCCCCCchhHHHHHHHHHHHhC---CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence 46699999998888888888754 222222 144444433 322 4565666655 5532
Q ss_pred --ccccCCcceeecC----CCCCCchHhhc--ccccEEEECC----CCC---CHHHHHHHHHHHHH
Q 028404 145 --FEQYGSDFAFYDY----NQPQDLPLELK--HAFSVVVVDP----PYL---SKECLEKVSETVSF 195 (209)
Q Consensus 145 --F~~~g~~FvfYDy----n~P~~lp~~lk--~~fD~Vv~DP----PFl---seec~~K~A~Tik~ 195 (209)
+..+|-+++++|. ..+..|.+.++ ....+|++.+ |+. ...-++++++-++.
T Consensus 143 ~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~ 208 (427)
T 3hvy_A 143 GSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIRE 208 (427)
T ss_dssp CCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHH
Confidence 2234557778877 33444444455 5678999999 765 33335555555554
No 256
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=32.92 E-value=2e+02 Score=24.17 Aligned_cols=88 Identities=10% Similarity=0.151 Sum_probs=54.1
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccccc----CC-cceeecCCCCCCchHhhcccccEEEECCC---C
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY----GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPP---Y 180 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~----g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP---F 180 (209)
+..+|+=|||=+=. ..|.+..|+.+++.+|+ ...-.. ++ +|+..|+.+| +| .||+|++==- +
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~--~p-----~~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTS--IP-----NADAVLLKYILHNW 259 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTC--CC-----CCSEEEEESCGGGS
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccCC--CC-----CccEEEeehhhccC
Confidence 46799999998543 35555578888999998 543222 22 6777888665 44 2998876333 2
Q ss_pred CCHHHHHHHHHHHHHhcCCC--CCcEEEe
Q 028404 181 LSKECLEKVSETVSFLARPG--DSKLLLL 207 (209)
Q Consensus 181 lseec~~K~A~Tik~L~k~~--~~kiilc 207 (209)
-.++|..-+.+..+.| ++. +++||++
T Consensus 260 ~d~~~~~~l~~~~~~L-~p~~~gG~l~i~ 287 (352)
T 1fp2_A 260 TDKDCLRILKKCKEAV-TNDGKRGKVTII 287 (352)
T ss_dssp CHHHHHHHHHHHHHHH-SGGGCCCEEEEE
T ss_pred CHHHHHHHHHHHHHhC-CCCCCCcEEEEE
Confidence 2345654455544544 541 4578775
No 257
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=32.57 E-value=46 Score=22.83 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=17.4
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.+ .+.+.++... ...+||+.||
T Consensus 50 ~~~dlvi~d~~l~~~~g~-~~~~~l~~~~--~~~~ii~~t~ 87 (130)
T 3eod_A 50 FTPDLMICDIAMPRMNGL-KLLEHIRNRG--DQTPVLVISA 87 (130)
T ss_dssp CCCSEEEECCC-----CH-HHHHHHHHTT--CCCCEEEEEC
T ss_pred CCCCEEEEecCCCCCCHH-HHHHHHHhcC--CCCCEEEEEc
Confidence 458888888544333322 2223333321 2346777765
No 258
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=31.97 E-value=31 Score=27.17 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=50.7
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cccC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .|.+.. +.+++.+|++... ...| + +|+.-|..+. |. .++||+|++
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~---~~--~~~fD~V~~ 109 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY---VA--NEKCDVAAC 109 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC---CC--SSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC---Cc--CCCCCEEEE
Confidence 678999999975433 343333 4578999998643 2222 1 4555565442 22 578999887
Q ss_pred CCCC-CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPY-LSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPF-lseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
-..+ ...+ ..++-..++.++|+ +++|++++
T Consensus 110 ~~~~~~~~~-~~~~l~~~~r~Lkp-gG~l~~~~ 140 (256)
T 1nkv_A 110 VGATWIAGG-FAGAEELLAQSLKP-GGIMLIGE 140 (256)
T ss_dssp ESCGGGTSS-SHHHHHHHTTSEEE-EEEEEEEE
T ss_pred CCChHhcCC-HHHHHHHHHHHcCC-CeEEEEec
Confidence 2221 1111 23444445556666 55777653
No 259
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=31.94 E-value=46 Score=23.35 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=19.4
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|.-....+.+ .+...++........+||+.||
T Consensus 50 ~~~dlii~D~~l~~~~g~-~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 50 AKYDLIILDIGLPIANGF-EVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp CCCSEEEECTTCGGGCHH-HHHHHHHSSSTTTTCCEEEEET
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhcccccCCCEEEEeC
Confidence 457888888655443332 2222333211112346777664
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=31.40 E-value=19 Score=29.67 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=23.9
Q ss_pred cccccEEEECCCCC---C---H---HHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 168 KHAFSVVVVDPPYL---S---K---ECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 168 k~~fD~Vv~DPPFl---s---e---ec~~K~A~Tik~L~k~~~~kiilc 207 (209)
.+..++||+|.|.. + . .-...+...++.|++..+.-||+.
T Consensus 145 ~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~v 193 (296)
T 1cr0_A 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI 193 (296)
T ss_dssp TTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred hcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 45688999999998 3 1 223456667777766423335554
No 261
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=31.38 E-value=65 Score=28.64 Aligned_cols=106 Identities=11% Similarity=0.212 Sum_probs=60.4
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCCCeEEEE------eCchHHHHHHhh-CCCCCceEEe---ecc-------------
Q 028404 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACI------ACPTLYAYLKKI-RPEVSPKILE---YDM------------- 143 (209)
Q Consensus 87 lSQFWYSd~Ta~~La~~l~~~a~~~~~rIacl------stPSly~~Lk~~-~~~~~~~LLE---~D~------------- 143 (209)
.+-|-|.+...+.|.+.+.+..+ ...+.+ ||-.+...|... .|+..+++.+ |..
T Consensus 57 ~~g~~y~~~~~~~l~~~la~~~g---~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~ 133 (431)
T 3ht4_A 57 TTGYGYDDIGRDTLEKVYADVFG---AEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVG 133 (431)
T ss_dssp CCTTCCSCHHHHHHHHHHHHHTT---CSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSS
T ss_pred CCCCCCChhhHHHHHHHHHHHhC---CCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccc
Confidence 45688999999999999888753 222221 222333344433 3455566554 332
Q ss_pred cccccCCcceeecCC-----CCCCchHhhcccccEEEECC----CC---CCHHHHHHHHHHHHH
Q 028404 144 RFEQYGSDFAFYDYN-----QPQDLPLELKHAFSVVVVDP----PY---LSKECLEKVSETVSF 195 (209)
Q Consensus 144 RF~~~g~~FvfYDyn-----~P~~lp~~lk~~fD~Vv~DP----PF---lseec~~K~A~Tik~ 195 (209)
-+..+|-++++++.+ .++.|.+.+.....+|++.+ |. ++.+-++.+++-++.
T Consensus 134 ~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~ 197 (431)
T 3ht4_A 134 SFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKE 197 (431)
T ss_dssp CSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHH
T ss_pred hHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHh
Confidence 122245578888874 33334444555667999996 55 455556666655554
No 262
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=31.32 E-value=78 Score=27.73 Aligned_cols=87 Identities=11% Similarity=0.102 Sum_probs=51.9
Q ss_pred cChHHHHHHHHHHHhhcCCCCCeEEEEeCc--hHHHHHHhh-CCCCCceEEee--ccc---c----cccCCcceeecCCC
Q 028404 92 YDAVTAETVAQEAVSLCSDSDSRVACIACP--TLYAYLKKI-RPEVSPKILEY--DMR---F----EQYGSDFAFYDYNQ 159 (209)
Q Consensus 92 YSd~Ta~~La~~l~~~a~~~~~rIaclstP--Sly~~Lk~~-~~~~~~~LLE~--D~R---F----~~~g~~FvfYDyn~ 159 (209)
|...|...|.+.+.+..+ ...+.+++.= .+...++.. .++..+++.+. -.- + ..+|-+.+++|++.
T Consensus 78 ~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d 155 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDD 155 (414)
T ss_dssp TCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTC
T ss_pred CCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCC
Confidence 467899999999988864 3344443332 233334433 34545555441 111 1 12455788899887
Q ss_pred CCCchHhhcccccEEEECCCC
Q 028404 160 PQDLPLELKHAFSVVVVDPPY 180 (209)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPF 180 (209)
+..|...+.....+|++.+|-
T Consensus 156 ~~~l~~ai~~~t~~v~le~p~ 176 (414)
T 3ndn_A 156 LSQWERALSVPTQAVFFETPS 176 (414)
T ss_dssp HHHHHHHTSSCCSEEEEESSC
T ss_pred HHHHHHhcCCCCeEEEEECCC
Confidence 766766676667788877765
No 263
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=31.27 E-value=1.9e+02 Score=22.96 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=36.1
Q ss_pred CeEEEEeCchHHHHHHhh--CCCCCceEEeecccccccCCcceeecCCCCCCchHhhcccccEEEE
Q 028404 113 SRVACIACPTLYAYLKKI--RPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 113 ~rIaclstPSly~~Lk~~--~~~~~~~LLE~D~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++|++.||=-|=.+|-+. ..+.+++++..+..-..-+-+++..|+..+..+...+++.+|+||.
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih 69 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVY 69 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence 467777753221122211 1234666665432211111268888999988887777877998883
No 264
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=31.19 E-value=20 Score=32.12 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeC--chHHHHHHhhCC------CCCceEEeecc
Q 028404 97 AETVAQEAVSLCSDSDSRVACIAC--PTLYAYLKKIRP------EVSPKILEYDM 143 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclst--PSly~~Lk~~~~------~~~~~LLE~D~ 143 (209)
+..||..+.+ .+.||++|++ |++...+..... ..+...+++|.
T Consensus 19 a~~la~~la~----~g~~vllvd~~~~~l~~~~~~~~~~~~~~v~~~L~~~eid~ 69 (374)
T 3igf_A 19 AIAAAKLLAS----QGKRVLLAGLAEPVLPLLLEQTLTPDPQQIAPNLEVVQFQS 69 (374)
T ss_dssp HHHHHHHHHH----TTCCEEEEECSCSHHHHHHTSCCCSSCEEEETTEEEEECCH
T ss_pred HHHHHHHHHH----CCCCeEEEeCCCCChHHhhCCCCCCCcccccccccccccCH
Confidence 3445555443 3678999998 466666643211 12455666664
No 265
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.03 E-value=47 Score=23.09 Aligned_cols=41 Identities=10% Similarity=0.257 Sum_probs=20.9
Q ss_pred cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 168 k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
...+|+||+|--....+.+ .+.+.++........+||+.||
T Consensus 48 ~~~~dlvi~d~~l~~~~g~-~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDGV-SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HSCCSEEEECSCCSSSCHH-HHHHHHHTSGGGTTCEEEEECT
T ss_pred hCCCCEEEEeCCCCCCCHH-HHHHHHHhCcccCCCCEEEEec
Confidence 3468888888655444332 2223333311112346777765
No 266
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=30.01 E-value=35 Score=27.73 Aligned_cols=108 Identities=10% Similarity=0.022 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhc---CCCCCeEEEEeCch-HHHHHHhhCCC-CCceEEeeccccccc-----------------------
Q 028404 97 AETVAQEAVSLC---SDSDSRVACIACPT-LYAYLKKIRPE-VSPKILEYDMRFEQY----------------------- 148 (209)
Q Consensus 97 a~~La~~l~~~a---~~~~~rIaclstPS-ly~~Lk~~~~~-~~~~LLE~D~RF~~~----------------------- 148 (209)
.+.+.+.+.+.. ..++.+|+=|||=+ +|..+.. ..+ .+++.+|++.+.-..
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~-~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~ 116 (263)
T 2a14_A 38 LKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA-CDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE 116 (263)
T ss_dssp HHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG-GGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHH-HhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence 444555544432 11467899899976 4543322 122 268889988642210
Q ss_pred --C----------------CcceeecCCCCCCchHhhcccccEEEEC------CCCCCHHHHHHHHHHHHHhcCCCCCcE
Q 028404 149 --G----------------SDFAFYDYNQPQDLPLELKHAFSVVVVD------PPYLSKECLEKVSETVSFLARPGDSKL 204 (209)
Q Consensus 149 --g----------------~~FvfYDyn~P~~lp~~lk~~fD~Vv~D------PPFlseec~~K~A~Tik~L~k~~~~ki 204 (209)
| .+|+.-|..++..++....++||+|++= +|. .+-+.++..-|..++|| |+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~--~~~~~~~l~~i~r~LKP-GG~l 193 (263)
T 2a14_A 117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCS--LDAYRAALCNLASLLKP-GGHL 193 (263)
T ss_dssp HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS--HHHHHHHHHHHHTTEEE-EEEE
T ss_pred cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCC--HHHHHHHHHHHHHHcCC-CcEE
Confidence 0 0267778776433332234689999872 332 11134555566678887 5678
Q ss_pred EEec
Q 028404 205 LLLT 208 (209)
Q Consensus 205 ilcT 208 (209)
|+++
T Consensus 194 i~~~ 197 (263)
T 2a14_A 194 VTTV 197 (263)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 267
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=29.52 E-value=57 Score=22.76 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=17.4
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--......+ .+...++.... ..+||+.|+
T Consensus 48 ~~~dlvi~d~~l~~~~g~-~~~~~l~~~~~--~~~ii~ls~ 85 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGM-DILREIKKITP--HMAVIILTG 85 (143)
T ss_dssp TTCCEEEEESCCSSSCHH-HHHHHHHHHCT--TCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCcHH-HHHHHHHHhCC--CCeEEEEEC
Confidence 356777777544433322 22333333221 235666553
No 268
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=29.31 E-value=84 Score=25.41 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc----------------ccCC-cceeecCCCCCCchHhh-ccc
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE----------------QYGS-DFAFYDYNQPQDLPLEL-KHA 170 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~----------------~~g~-~FvfYDyn~P~~lp~~l-k~~ 170 (209)
+..+|+=|||=+=.. .|.+..|..+++-+|+....- .+.. .|+.-|.... +|..+ .++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~--l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH--LPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC--HHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh--hhhhCCCcC
Confidence 456888899885443 344446777888899875321 1111 4666665432 55444 578
Q ss_pred ccEEEE---CCCCCCHH-----HHHHHHHHHHHhcCCCCCcEEEec
Q 028404 171 FSVVVV---DPPYLSKE-----CLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 171 fD~Vv~---DPPFlsee-----c~~K~A~Tik~L~k~~~~kiilcT 208 (209)
||+|++ ||.+..+. ....+...+..++++ ++.|++.|
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp-GG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV-GGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEE-EEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC-CCEEEEEe
Confidence 997765 56554221 012344555666776 55777766
No 269
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=28.67 E-value=1.3e+02 Score=23.15 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=53.0
Q ss_pred CCCeEEEEeCchHH--HHHHhhCCCCCceEEeeccccccc-----C--C-cceeecCCCCCCchHhhcccccEEEECCCC
Q 028404 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY-----G--S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPY 180 (209)
Q Consensus 111 ~~~rIaclstPSly--~~Lk~~~~~~~~~LLE~D~RF~~~-----g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPF 180 (209)
++.+|+=|||=+=. ..+.+. ...+++.+|++...... . . +|+.-|.... .++ .++||+|++...+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~---~~~fD~v~~~~~l 117 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKL-HLP---QDSFDLAYSSLAL 117 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGC-CCC---TTCEEEEEEESCG
T ss_pred CCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhc-cCC---CCCceEEEEeccc
Confidence 56899999986433 234432 22279999998654322 1 1 3444444321 111 3679999987765
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 181 LSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 181 lseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
....-..++-..+..++++ ++++|+++
T Consensus 118 ~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 144 (243)
T 3bkw_A 118 HYVEDVARLFRTVHQALSP-GGHFVFST 144 (243)
T ss_dssp GGCSCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cccchHHHHHHHHHHhcCc-CcEEEEEe
Confidence 4322234555666667776 55777754
No 270
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.60 E-value=83 Score=21.85 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=21.8
Q ss_pred ccccEEEECCCCC-CHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYL-SKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFl-seec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--.. ..+.+ .+.+.+|........+||+.||
T Consensus 49 ~~~dlvi~D~~l~~~~~g~-~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 49 DSITLIIMDIAFPVEKEGL-EVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp CCCSEEEECSCSSSHHHHH-HHHHHHHHSGGGTTCCEEEEES
T ss_pred CCCcEEEEeCCCCCCCcHH-HHHHHHHhCcccCCCCEEEEeC
Confidence 4688999987666 44432 2334444411112346777765
No 271
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=28.19 E-value=67 Score=23.07 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=19.8
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--....+.+ .+...++........+||+.||
T Consensus 50 ~~~dlii~D~~l~~~~g~-~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 50 TRPDLIISDVLMPEMDGY-ALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp CCCSEEEEESCCSSSCHH-HHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhCCCcCCCCEEEEEC
Confidence 457888888654444332 2233344332111335777664
No 272
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=28.11 E-value=63 Score=22.43 Aligned_cols=10 Identities=30% Similarity=0.281 Sum_probs=6.5
Q ss_pred ccccEEEECC
Q 028404 169 HAFSVVVVDP 178 (209)
Q Consensus 169 ~~fD~Vv~DP 178 (209)
+.+|+||+|-
T Consensus 48 ~~~dlvilD~ 57 (133)
T 3b2n_A 48 YNPNVVILDI 57 (133)
T ss_dssp HCCSEEEECS
T ss_pred cCCCEEEEec
Confidence 3567777774
No 273
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=27.44 E-value=64 Score=26.40 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+.-.+||+||++..+.. +++...|+..... .-+-|++|
T Consensus 82 ~~~~~ilIDtg~~~~~~-~~l~~~i~~~~~~-~I~~Ii~T 119 (270)
T 4eyb_A 82 DGGRVLVVDTAWTDDQT-AQILNWIKQEINL-PVALAVVT 119 (270)
T ss_dssp ETTEEEEESCCSSHHHH-HHHHHHHHHHTCC-CEEEEEEC
T ss_pred ECCEEEEEeCCCCHHHH-HHHHHHHHHhcCC-ceEEEEeC
Confidence 33459999999865543 5555555554332 12335555
No 274
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.17 E-value=68 Score=22.78 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=20.4
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--....+.++ +...++... ...+||+.|+
T Consensus 65 ~~~dlii~D~~l~~~~g~~-~~~~l~~~~--~~~~ii~ls~ 102 (150)
T 4e7p_A 65 ESVDIAILDVEMPVKTGLE-VLEWIRSEK--LETKVVVVTT 102 (150)
T ss_dssp SCCSEEEECSSCSSSCHHH-HHHHHHHTT--CSCEEEEEES
T ss_pred cCCCEEEEeCCCCCCcHHH-HHHHHHHhC--CCCeEEEEeC
Confidence 4688888886554443322 233344322 2346777764
No 275
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=27.06 E-value=29 Score=30.53 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeC---chHHHHHH
Q 028404 97 AETVAQEAVSLCSDSDSRVACIAC---PTLYAYLK 128 (209)
Q Consensus 97 a~~La~~l~~~a~~~~~rIaclst---PSly~~Lk 128 (209)
+..||-.+... . .+.||++|++ |++...+.
T Consensus 35 a~~lA~~la~~-~-~g~~vllid~D~~~~l~~~~~ 67 (348)
T 3io3_A 35 SSSVAVQLALA-Q-PNEQFLLISTDPAHNLSDAFC 67 (348)
T ss_dssp HHHHHHHHHHH-C-TTSCEEEEECCSSCHHHHHHT
T ss_pred HHHHHHHHHHh-c-CCCeEEEEECCCCCChHHHhc
Confidence 44455554420 1 4678999988 56666654
No 276
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=27.05 E-value=43 Score=23.41 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=18.1
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.++ +...++........+||+.||
T Consensus 45 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 45 HHPDLVILDMDIIGENSPN-LCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HCCSEEEEETTC------C-HHHHHHTSTTCTTCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCcHHH-HHHHHHcCcccCCCCEEEEec
Confidence 4688888887655444322 223333322112346777664
No 277
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=27.05 E-value=39 Score=27.17 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=12.8
Q ss_pred hcccccEEEEC-CCCCCH
Q 028404 167 LKHAFSVVVVD-PPYLSK 183 (209)
Q Consensus 167 lk~~fD~Vv~D-PPFlse 183 (209)
++..||+||+| ||-++.
T Consensus 141 l~~~yD~viiD~pp~~~~ 158 (267)
T 3k9g_A 141 LYYKYDYIVIDTNPSLDV 158 (267)
T ss_dssp TCTTCSEEEEEECSSCSH
T ss_pred hhcCCCEEEEECcCCccH
Confidence 45679999999 676654
No 278
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=26.81 E-value=23 Score=26.16 Aligned_cols=87 Identities=8% Similarity=0.148 Sum_probs=50.9
Q ss_pred CCCeEEEEeCchH--HHHHHhhCCCCCceEEeecccccccC----C--cceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 111 SDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRFEQYG----S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 111 ~~~rIaclstPSl--y~~Lk~~~~~~~~~LLE~D~RF~~~g----~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
++.+|+=|||=+= -..+.+.. .+++.+|++....... + +|+.-| .| ++ .++||+|++--.+-.
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~--~~---~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKFDSVITLSDP--KE--IP---DNSVDFILFANSFHD 87 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHCTTSEEESSG--GG--SC---TTCEEEEEEESCSTT
T ss_pred CCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhCCCcEEEeCC--CC--CC---CCceEEEEEccchhc
Confidence 5678999988643 33344322 2788899887554321 1 344334 11 22 368999998776654
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 183 KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 183 eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
..-...+-..++.++++ ++++++.
T Consensus 88 ~~~~~~~l~~~~~~L~p-gG~l~~~ 111 (170)
T 3i9f_A 88 MDDKQHVISEVKRILKD-DGRVIII 111 (170)
T ss_dssp CSCHHHHHHHHHHHEEE-EEEEEEE
T ss_pred ccCHHHHHHHHHHhcCC-CCEEEEE
Confidence 32235555666666776 4567665
No 279
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=26.72 E-value=27 Score=26.68 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=25.1
Q ss_pred cccc--EEEECCCC--C--CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 169 HAFS--VVVVDPPY--L--SKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 169 ~~fD--~Vv~DPPF--l--seec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+..+ +||+|.|. + ..+-...+...++.+++..+.-||+.|
T Consensus 120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~ 165 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATS 165 (235)
T ss_dssp HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4688 99999999 5 333346666777777654233355443
No 280
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=26.23 E-value=69 Score=24.74 Aligned_cols=38 Identities=8% Similarity=0.234 Sum_probs=18.8
Q ss_pred cccEEEECCCCCCHHHHHHHHHHHHHhc---CCCCCcEEEecC
Q 028404 170 AFSVVVVDPPYLSKECLEKVSETVSFLA---RPGDSKLLLLTG 209 (209)
Q Consensus 170 ~fD~Vv~DPPFlseec~~K~A~Tik~L~---k~~~~kiilcTG 209 (209)
.+|+||+|--.-..+.+ .+...+|... .+ ..+||+.||
T Consensus 119 ~~dlillD~~lp~~~G~-el~~~lr~~~~~~~~-~~piI~ls~ 159 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGY-EATREIRKVEKSYGV-RTPIIAVSG 159 (206)
T ss_dssp SCSEEEEESCCSSSCHH-HHHHHHHHHHHTTTC-CCCEEEEES
T ss_pred CCCEEEEcCCCCCCCHH-HHHHHHHhhhhhcCC-CCcEEEEEC
Confidence 58888888433222222 2333444431 12 346777775
No 281
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=26.20 E-value=47 Score=27.05 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=46.6
Q ss_pred cccccc-cChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccccc--------CC-cce
Q 028404 86 RLSQFW-YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY--------GS-DFA 153 (209)
Q Consensus 86 qlSQFW-YSd~Ta~~La~~l~~~a~~~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~~~--------g~-~Fv 153 (209)
.+.|.| -+...++.+++.+.- .++.+|+=|||=+=.. .|.+.. .+++.+|+|.+.... +. +++
T Consensus 7 ~~gQ~fl~d~~~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~ 81 (244)
T 1qam_A 7 KHSQNFITSKHNIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVL 81 (244)
T ss_dssp ---CCBCCCHHHHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEE
T ss_pred cCCccccCCHHHHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEE
Confidence 455644 455555555544321 1567899898875443 344432 579999999865432 11 233
Q ss_pred eecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 154 FYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
.-|..+- .++. ...| .||.+|||.-
T Consensus 82 ~~D~~~~-~~~~--~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 82 NKDILQF-KFPK--NQSY-KIFGNIPYNI 106 (244)
T ss_dssp CCCGGGC-CCCS--SCCC-EEEEECCGGG
T ss_pred EChHHhC-Cccc--CCCe-EEEEeCCccc
Confidence 3332210 0111 1234 7999999964
No 282
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=26.14 E-value=92 Score=21.69 Aligned_cols=8 Identities=13% Similarity=0.700 Sum_probs=5.0
Q ss_pred cccEEEEC
Q 028404 170 AFSVVVVD 177 (209)
Q Consensus 170 ~fD~Vv~D 177 (209)
.+|+||+|
T Consensus 52 ~~dlvllD 59 (133)
T 2r25_B 52 NYNMIFMD 59 (133)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEe
Confidence 46666666
No 283
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=25.84 E-value=69 Score=22.11 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=19.4
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--....+.+ .+...++... ...+||+.|+
T Consensus 50 ~~~dlvi~d~~l~~~~g~-~~~~~l~~~~--~~~~ii~~s~ 87 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGGL-EMLDRIKAGG--AKPYVIVISA 87 (137)
T ss_dssp HCCSEEEECSSCSSSCHH-HHHHHHHHTT--CCCEEEECCC
T ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHhcC--CCCcEEEEec
Confidence 467888888554443332 2223333322 1346777664
No 284
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=25.78 E-value=52 Score=27.22 Aligned_cols=91 Identities=9% Similarity=0.013 Sum_probs=54.3
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--cceeecCCCCCCchHhhcccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (209)
++.+|+=|||=+=.. .|.+.. +.+++.+|++...- ..| + +|+.-|+.+ +| .-.++||+|++
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~-~~~~~fD~V~~ 191 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD---TP-FDKGAVTASWN 191 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CC-CCTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc---CC-CCCCCEeEEEE
Confidence 578999999975433 333321 45789999986432 222 1 466666653 22 11368999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 DPPFlseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
---+-..+ +.++-..+..++++ +++|+++|
T Consensus 192 ~~~l~~~~-~~~~l~~~~~~Lkp-gG~l~~~~ 221 (312)
T 3vc1_A 192 NESTMYVD-LHDLFSEHSRFLKV-GGRYVTIT 221 (312)
T ss_dssp ESCGGGSC-HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCchhhCC-HHHHHHHHHHHcCC-CcEEEEEE
Confidence 43322222 45666667777777 56777765
No 285
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=25.24 E-value=54 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=23.3
Q ss_pred cccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 028404 170 AFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (209)
Q Consensus 170 ~fD~Vv~DPPFlseec~~K~A~Tik~L~k~ 199 (209)
++-+||..|||+++-+.+-+--+.-.+.++
T Consensus 14 ~~~ivv~~~Pyg~~~a~~Al~~A~aala~g 43 (140)
T 2d1p_A 14 RFAIVVTGPAYGTQQASSAFQFAQALIADG 43 (140)
T ss_dssp EEEEEECSCSSSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHHCC
Confidence 355899999999999988776666666654
No 286
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=24.94 E-value=87 Score=21.28 Aligned_cols=10 Identities=30% Similarity=0.192 Sum_probs=6.6
Q ss_pred ccccEEEECC
Q 028404 169 HAFSVVVVDP 178 (209)
Q Consensus 169 ~~fD~Vv~DP 178 (209)
..+|+||+|-
T Consensus 46 ~~~dlvi~D~ 55 (126)
T 1dbw_A 46 VRNGVLVTDL 55 (126)
T ss_dssp CCSEEEEEEC
T ss_pred CCCCEEEEEC
Confidence 3577777773
No 287
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.29 E-value=75 Score=22.55 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=17.8
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--....+.+ .+...++.... ..+||+.|+
T Consensus 50 ~~~dlvi~d~~l~~~~g~-~~~~~l~~~~~--~~~ii~ls~ 87 (154)
T 2rjn_A 50 TSVQLVISDMRMPEMGGE-VFLEQVAKSYP--DIERVVISG 87 (154)
T ss_dssp SCCSEEEEESSCSSSCHH-HHHHHHHHHCT--TSEEEEEEC
T ss_pred CCCCEEEEecCCCCCCHH-HHHHHHHHhCC--CCcEEEEec
Confidence 357777777544433222 22333333221 345666654
No 288
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.23 E-value=66 Score=22.06 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=19.8
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--....+.+ .+.+.+|... .+.+||+.|+
T Consensus 45 ~~~dlii~d~~l~~~~g~-~~~~~l~~~~--~~~~ii~~s~ 82 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNGI-QVLETLRKRQ--YSGIIIIVSA 82 (134)
T ss_dssp HCCSEEEEETTCSSSCHH-HHHHHHHHTT--CCSEEEEEEC
T ss_pred cCCCEEEEecCCCCCChH-HHHHHHHhcC--CCCeEEEEeC
Confidence 468888888655444332 2233333322 2346777664
No 289
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=23.79 E-value=94 Score=21.99 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=18.0
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.+ .+...++.... ..+||+.|+
T Consensus 50 ~~~dlii~D~~l~~~~g~-~~~~~l~~~~~--~~~ii~ls~ 87 (153)
T 3cz5_A 50 TTPDIVVMDLTLPGPGGI-EATRHIRQWDG--AARILIFTM 87 (153)
T ss_dssp TCCSEEEECSCCSSSCHH-HHHHHHHHHCT--TCCEEEEES
T ss_pred CCCCEEEEecCCCCCCHH-HHHHHHHHhCC--CCeEEEEEC
Confidence 457778877544333222 22333333321 235666653
No 290
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.69 E-value=78 Score=21.60 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=7.4
Q ss_pred ccccEEEECCCCCC
Q 028404 169 HAFSVVVVDPPYLS 182 (209)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (209)
..+|+||+|--...
T Consensus 49 ~~~dlii~d~~l~~ 62 (132)
T 3lte_A 49 FEPAIMTLDLSMPK 62 (132)
T ss_dssp TCCSEEEEESCBTT
T ss_pred cCCCEEEEecCCCC
Confidence 34666666644433
No 291
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.32 E-value=82 Score=22.40 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=19.0
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.++ +...++.... ..+||+.||
T Consensus 57 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~--~~~ii~~s~ 94 (153)
T 3hv2_A 57 REVDLVISAAHLPQMDGPT-LLARIHQQYP--STTRILLTG 94 (153)
T ss_dssp SCCSEEEEESCCSSSCHHH-HHHHHHHHCT--TSEEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHH-HHHHHHhHCC--CCeEEEEEC
Confidence 4578888885444433322 2233333221 346777664
No 292
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=23.24 E-value=68 Score=28.00 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHhhcCCCCCeEEEEeCchHHH-HHHhh-CCCCCceEEe--ecc---c-----ccccCCcceeecCCCC
Q 028404 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYA-YLKKI-RPEVSPKILE--YDM---R-----FEQYGSDFAFYDYNQP 160 (209)
Q Consensus 93 Sd~Ta~~La~~l~~~a~~~~~rIaclstPSly~-~Lk~~-~~~~~~~LLE--~D~---R-----F~~~g~~FvfYDyn~P 160 (209)
...|...|.+.+.+..+ ...+.++++=+--. .+... .++..+++.+ |-. - +..+|-+++++|++.+
T Consensus 65 ~~p~~~~l~~~la~l~g--~~~~~~~~sG~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 142 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEG--GTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDP 142 (400)
T ss_dssp CCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSH
T ss_pred CCHHHHHHHHHHHHHhC--CCCEEEecCHHHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCH
Confidence 55788888888888754 22333333222111 12222 3444454443 210 1 1223557889999877
Q ss_pred CCchHhhcccccEEEECCCC
Q 028404 161 QDLPLELKHAFSVVVVDPPY 180 (209)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPF 180 (209)
..|.+.+.....+|++.+|.
T Consensus 143 ~~l~~~i~~~~~~v~~e~~~ 162 (400)
T 3nmy_A 143 AAFKAAIRADTKMVWIETPT 162 (400)
T ss_dssp HHHHHHCCTTEEEEEEESSC
T ss_pred HHHHHHhccCCCEEEEECCC
Confidence 66766676667789988876
No 293
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=23.21 E-value=32 Score=28.45 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.0
Q ss_pred hcccccEEEEC-CCCCC
Q 028404 167 LKHAFSVVVVD-PPYLS 182 (209)
Q Consensus 167 lk~~fD~Vv~D-PPFls 182 (209)
+...||+||+| ||.++
T Consensus 153 ~~~~yD~ViiD~p~~~~ 169 (307)
T 3end_A 153 LLDDTDVVIFDVLGDVV 169 (307)
T ss_dssp TTSSCSEEEEEECCSSC
T ss_pred ccccCCEEEEeCCCccc
Confidence 45579999999 88776
No 294
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=23.15 E-value=33 Score=27.47 Aligned_cols=95 Identities=16% Similarity=0.046 Sum_probs=52.2
Q ss_pred CCCeEEEEeCchHHH--HHHhhCCCCCceEEeecccc--------cccC-C--cceeecCCCCCCchHhh-cccccEEEE
Q 028404 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG-S--DFAFYDYNQPQDLPLEL-KHAFSVVVV 176 (209)
Q Consensus 111 ~~~rIaclstPSly~--~Lk~~~~~~~~~LLE~D~RF--------~~~g-~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~ 176 (209)
+..+|+=|||=+=.. .+.+..|+.+++-+|+...- ...| + .|+.-|..+. ++..+ .++||+|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~--l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV--LHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH--HHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH--HHHHcCCCChheEEE
Confidence 456888888875433 33344666678888877532 1122 1 3333333221 23323 468998887
Q ss_pred C--CCCCCHHHHH------HHHHHHHHhcCCCCCcEEEec
Q 028404 177 D--PPYLSKECLE------KVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 177 D--PPFlseec~~------K~A~Tik~L~k~~~~kiilcT 208 (209)
. +|+....... .+...+..++|+ ++.|++.|
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp-GG~l~i~t 150 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQL-GGVFHMAT 150 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEE-EEEEEEEE
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCC-CcEEEEEe
Confidence 5 5544332222 255666667777 45677766
No 295
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.74 E-value=73 Score=22.28 Aligned_cols=40 Identities=5% Similarity=0.127 Sum_probs=18.6
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.+ .+...++........+||+.|+
T Consensus 51 ~~~dlii~d~~l~~~~g~-~~~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 51 THPHLIITEANMPKISGM-DLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HCCSEEEEESCCSSSCHH-HHHHHHHTSTTTTTSCEEEEES
T ss_pred CCCCEEEEcCCCCCCCHH-HHHHHHHcCcccCCCCEEEEeC
Confidence 457888888554443322 2222233210112346777664
No 296
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=22.65 E-value=2e+02 Score=19.95 Aligned_cols=89 Identities=8% Similarity=-0.117 Sum_probs=44.8
Q ss_pred CCeEEEEeCchHHH----HHHhhCCCCCceEEeeccc-ccc----cCCcceeecCCCCCCchHhhcccccEEEECCCCCC
Q 028404 112 DSRVACIACPTLYA----YLKKIRPEVSPKILEYDMR-FEQ----YGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (209)
Q Consensus 112 ~~rIaclstPSly~----~Lk~~~~~~~~~LLE~D~R-F~~----~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (209)
+.+|+++|+=.+=. .|.+ .+.++.++|.+.. ... ++-.++.-|...+..+....-..+|+||+=.|..
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~- 80 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE- 80 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc-
Confidence 46888888864433 3333 2457888887643 221 2222334455544333222123589777766643
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEe
Q 028404 183 KECLEKVSETVSFLARPGDSKLLLL 207 (209)
Q Consensus 183 eec~~K~A~Tik~L~k~~~~kiilc 207 (209)
+....+...++.+... +||+.
T Consensus 81 -~~~~~~~~~~~~~~~~---~ii~~ 101 (140)
T 1lss_A 81 -EVNLMSSLLAKSYGIN---KTIAR 101 (140)
T ss_dssp -HHHHHHHHHHHHTTCC---CEEEE
T ss_pred -hHHHHHHHHHHHcCCC---EEEEE
Confidence 2223445556654332 66653
No 297
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=22.56 E-value=53 Score=25.90 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=11.9
Q ss_pred hhcc-cccEEEEC-CCCCCH
Q 028404 166 ELKH-AFSVVVVD-PPYLSK 183 (209)
Q Consensus 166 ~lk~-~fD~Vv~D-PPFlse 183 (209)
.++. .||+||+| ||-++.
T Consensus 108 ~l~~~~yD~viiD~p~~~~~ 127 (260)
T 3q9l_A 108 DLKAMDFEFIVCDSPAGIET 127 (260)
T ss_dssp HHHHTTCSEEEEECCSSSSH
T ss_pred HHhccCCCEEEEcCCCCCCH
Confidence 3455 78888888 555543
No 298
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=22.49 E-value=71 Score=22.25 Aligned_cols=38 Identities=5% Similarity=0.038 Sum_probs=21.7
Q ss_pred ccccEEEECCCCCC--HHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLS--KECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFls--eec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--... .+.+ .+...++... ...+||+.||
T Consensus 49 ~~~dlvi~D~~l~~~~~~g~-~~~~~l~~~~--~~~~ii~~s~ 88 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSGI-ELLETLVKRG--FHLPTIVMAS 88 (136)
T ss_dssp TTEEEEEEETTGGGBTTHHH-HHHHHHHHTT--CCCCEEEEES
T ss_pred cCCCEEEEeCcCCCCCccHH-HHHHHHHhCC--CCCCEEEEEc
Confidence 45899999976555 4433 2333344332 2346887775
No 299
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.44 E-value=89 Score=20.30 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=5.2
Q ss_pred cccEEEECCC
Q 028404 170 AFSVVVVDPP 179 (209)
Q Consensus 170 ~fD~Vv~DPP 179 (209)
.+|+||+|-.
T Consensus 45 ~~dlii~d~~ 54 (119)
T 2j48_A 45 QPIVILMAWP 54 (119)
T ss_dssp CCSEEEEECS
T ss_pred CCCEEEEecC
Confidence 3555555543
No 300
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=22.29 E-value=1.1e+02 Score=20.71 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=20.5
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 171 FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 171 fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+|+||+|--....+.++ +.+.++... ...+||+.||
T Consensus 47 ~dlvi~D~~l~~~~g~~-~~~~l~~~~--~~~~ii~~s~ 82 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIE-VIRHLAEHK--SPASLILISG 82 (135)
T ss_dssp TEEEEEECCTTTTHHHH-HHHHHHHTT--CCCEEEEEES
T ss_pred CCEEEEeCCCCCCCHHH-HHHHHHhCC--CCCCEEEEEe
Confidence 89999997665554432 233333322 2346777765
No 301
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=22.03 E-value=49 Score=27.29 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=12.8
Q ss_pred hcccccEEEEC-CCCCCH
Q 028404 167 LKHAFSVVVVD-PPYLSK 183 (209)
Q Consensus 167 lk~~fD~Vv~D-PPFlse 183 (209)
++..||+||+| ||.++.
T Consensus 100 l~~~yD~viiD~p~~~~~ 117 (286)
T 2xj4_A 100 AMAECDFILIDTPGGDSA 117 (286)
T ss_dssp HHHHCSEEEEECCSSCCH
T ss_pred HHhcCCEEEEcCCCCccH
Confidence 45679999999 666654
No 302
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=21.99 E-value=98 Score=22.22 Aligned_cols=37 Identities=3% Similarity=0.239 Sum_probs=20.1
Q ss_pred cccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 170 ~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
.+|+||+|--....+.+ .+.+.++.... ..+||+.|+
T Consensus 83 ~~dliilD~~l~~~~g~-~~~~~lr~~~~--~~~ii~ls~ 119 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGI-TCLSNIMEFDK--NARVIMISA 119 (157)
T ss_dssp GCCEEEECSSCSSSCHH-HHHHHHHHHCT--TCCEEEEES
T ss_pred CCCEEEEeccCCCccHH-HHHHHHHhhCC--CCcEEEEec
Confidence 57888888655444432 23333444332 346777664
No 303
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=21.95 E-value=86 Score=22.24 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=18.6
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 171 FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 171 fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
||+||+|--....+.+ .+...++.... ..+||+.|+
T Consensus 49 ~dlvi~D~~l~~~~g~-~~~~~l~~~~~--~~~ii~~s~ 84 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEGT-EVIQKARLISP--NSVYLMLTG 84 (151)
T ss_dssp CSEEEEESCCSSSCHH-HHHHHHHHHCS--SCEEEEEEC
T ss_pred CCEEEEeCCCCCCcHH-HHHHHHHhcCC--CcEEEEEEC
Confidence 6888888554444332 23333443322 346776664
No 304
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=21.79 E-value=2.3e+02 Score=20.49 Aligned_cols=89 Identities=6% Similarity=0.027 Sum_probs=50.3
Q ss_pred CCeEEEEeCchHHH----HHHhhCCCCCceEEeecccc-c---ccCCcceeecCCCCCCchHhhcccccEEEECCCCCCH
Q 028404 112 DSRVACIACPTLYA----YLKKIRPEVSPKILEYDMRF-E---QYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (209)
Q Consensus 112 ~~rIaclstPSly~----~Lk~~~~~~~~~LLE~D~RF-~---~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (209)
..+|+++|+=.+=. .|++ .+.+++++|.|..- . ..|-.+++-|...|..+...--...|+||+=-|--..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE 84 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence 46899999875444 4443 35689999998632 2 2343455667766543322112358877754443222
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEE
Q 028404 184 ECLEKVSETVSFLARPGDSKLLL 206 (209)
Q Consensus 184 ec~~K~A~Tik~L~k~~~~kiil 206 (209)
...++.++|.+... .+||.
T Consensus 85 --n~~~~~~a~~~~~~--~~iia 103 (140)
T 3fwz_A 85 --AGEIVASARAKNPD--IEIIA 103 (140)
T ss_dssp --HHHHHHHHHHHCSS--SEEEE
T ss_pred --HHHHHHHHHHHCCC--CeEEE
Confidence 23466777777543 35554
No 305
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=21.74 E-value=56 Score=25.51 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=53.3
Q ss_pred CCCeEEEEeCchHHHH--HHhhCCCCCceEEeeccccccc--------CC-cceeecCCCCCCchHhhcccccEEEECCC
Q 028404 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (209)
Q Consensus 111 ~~~rIaclstPSly~~--Lk~~~~~~~~~LLE~D~RF~~~--------g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (209)
++.+|+=|||=+=... |.+.. ..+++.+|++...-.. +. +|+.-|.... .++ .++||+|++--.
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~---~~~fD~v~~~~~ 167 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-TLP---PNTYDLIVIQWT 167 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-CCC---SSCEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-CCC---CCCeEEEEEcch
Confidence 5789999999754332 33222 3468899987654321 11 4555554331 111 357999998665
Q ss_pred C--CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 028404 180 Y--LSKECLEKVSETVSFLARPGDSKLLLLT 208 (209)
Q Consensus 180 F--lseec~~K~A~Tik~L~k~~~~kiilcT 208 (209)
+ +..+-+.++-..+..++++ +++|++++
T Consensus 168 l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 197 (254)
T 1xtp_A 168 AIYLTDADFVKFFKHCQQALTP-NGYIFFKE 197 (254)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCC-CeEEEEEe
Confidence 3 3323345666666667776 55777764
No 306
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=21.71 E-value=98 Score=26.71 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.0
Q ss_pred cccccEEEEC-CC
Q 028404 168 KHAFSVVVVD-PP 179 (209)
Q Consensus 168 k~~fD~Vv~D-PP 179 (209)
++.||+||+| ||
T Consensus 149 ~~~yD~VIiDtpP 161 (349)
T 3ug7_A 149 SNEFDVVIFDTAP 161 (349)
T ss_dssp CCSCSEEEECSCC
T ss_pred hCCCCEEEECCCC
Confidence 3579999999 77
No 307
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.54 E-value=1e+02 Score=21.66 Aligned_cols=38 Identities=18% Similarity=0.409 Sum_probs=19.1
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+|+||+|--....+-+ .+...++... + ..+||+.||
T Consensus 48 ~~~dlvllD~~lp~~~g~-~l~~~l~~~~-~-~~~ii~ls~ 85 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDGI-ELVDNILKLY-P-DCSVIFMSG 85 (141)
T ss_dssp SCCSEEEEESCCSSSCHH-HHHHHHHHHC-T-TCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhhC-C-CCcEEEEeC
Confidence 458888888544332221 2233333322 2 346777765
No 308
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=21.48 E-value=26 Score=27.46 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=12.4
Q ss_pred hcccccEEEEC-CCCCCH
Q 028404 167 LKHAFSVVVVD-PPYLSK 183 (209)
Q Consensus 167 lk~~fD~Vv~D-PPFlse 183 (209)
++..||+||+| ||.++.
T Consensus 115 l~~~yD~viiD~p~~~~~ 132 (245)
T 3ea0_A 115 AASFYDYIIVDFGASIDH 132 (245)
T ss_dssp HHHHCSEEEEEEESSCCT
T ss_pred HHhhCCEEEEeCCCCCch
Confidence 45679999999 666654
No 309
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.04 E-value=1.1e+02 Score=20.83 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=6.7
Q ss_pred ccccEEEECCC
Q 028404 169 HAFSVVVVDPP 179 (209)
Q Consensus 169 ~~fD~Vv~DPP 179 (209)
+.+|+||+|--
T Consensus 45 ~~~dlii~D~~ 55 (120)
T 3f6p_A 45 LQPDLILLDIM 55 (120)
T ss_dssp TCCSEEEEETT
T ss_pred CCCCEEEEeCC
Confidence 35677777743
No 310
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=20.81 E-value=64 Score=23.07 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=14.0
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q 028404 39 DDDRPMLSSQALAALQEFL 57 (209)
Q Consensus 39 ddd~~~LSa~tLaAL~eF~ 57 (209)
+.+...||+.+..||.|=-
T Consensus 6 ~~~~~~l~paA~RALaEAe 24 (70)
T 2k5k_A 6 EETRKDLPPEALRALAEAE 24 (70)
T ss_dssp CSCCCSCCTHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHH
Confidence 3335679999999996643
No 311
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=20.63 E-value=85 Score=27.57 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=22.2
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
..+++||+|=----..--++...+++.|..+ +.|++||
T Consensus 148 ~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~---~~l~LTa 185 (500)
T 1z63_A 148 VEWKYIVIDEAQNIKNPQTKIFKAVKELKSK---YRIALTG 185 (500)
T ss_dssp CCEEEEEEETGGGGSCTTSHHHHHHHTSCEE---EEEEECS
T ss_pred CCcCEEEEeCccccCCHhHHHHHHHHhhccC---cEEEEec
Confidence 4689999994322111014556667666443 6788887
No 312
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.41 E-value=82 Score=22.29 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=19.5
Q ss_pred cccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 168 k~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
.+.+|+||+|--....+.+ .+...++... ...+||+.||
T Consensus 59 ~~~~dlii~d~~l~~~~g~-~~~~~l~~~~--~~~~ii~~s~ 97 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDGA-QVAAAVRSYE--LPTRVLLISA 97 (152)
T ss_dssp HHCCSEEEEETTCSSSCHH-HHHHHHHHTT--CSCEEEEEES
T ss_pred hcCCCEEEEeCCCCCCCHH-HHHHHHHhcC--CCCeEEEEEc
Confidence 3468888888544333332 2223333322 1346777664
No 313
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.21 E-value=1e+02 Score=21.18 Aligned_cols=12 Identities=25% Similarity=0.121 Sum_probs=7.1
Q ss_pred ccccEEEECCCC
Q 028404 169 HAFSVVVVDPPY 180 (209)
Q Consensus 169 ~~fD~Vv~DPPF 180 (209)
+.+|+||+|--.
T Consensus 53 ~~~dlii~d~~l 64 (143)
T 3cnb_A 53 VKPDVVMLDLMM 64 (143)
T ss_dssp TCCSEEEEETTC
T ss_pred cCCCEEEEeccc
Confidence 346777777443
No 314
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=20.04 E-value=1.1e+02 Score=21.75 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=17.6
Q ss_pred ccccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEecC
Q 028404 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (209)
Q Consensus 169 ~~fD~Vv~DPPFlseec~~K~A~Tik~L~k~~~~kiilcTG 209 (209)
+.+|+||+|--....+.+ .+...++.... ..+||+.|+
T Consensus 46 ~~~dliild~~l~~~~g~-~~~~~l~~~~~--~~pii~ls~ 83 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL-ALFRKILALDP--DLPMILVTG 83 (155)
T ss_dssp TCCSEEEEESCCSSSCHH-HHHHHHHHHCT--TSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhhCC--CCCEEEEEC
Confidence 357777777544333222 22333333321 335666654
Done!