BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028405
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O78424|YCF19_GUITH Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3
SV=1
Length = 91
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 144 RVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQIL 203
RV L+WFPN+ W QP ++ + DPYL +FR I+PP+ +D+SP+L F +L + QI+
Sbjct: 26 RVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG-IDISPILGFILLQCIMQIV 84
Query: 204 T 204
+
Sbjct: 85 S 85
>sp|Q9TM45|YCF19_CYACA Uncharacterized protein ycf19 OS=Cyanidium caldarium GN=ycf19 PE=3
SV=1
Length = 91
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 133 WLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLA 192
+L IY ++L+R+ L WFPNI W QP ++ L DPYLNLF + P F +D SP++
Sbjct: 15 FLQIYIVLILLRMSLGWFPNINWYSQPFYSLSQLSDPYLNLFHGVFPS-FLGIDFSPIIG 73
Query: 193 FAVLGTLAQILT 204
++ + ++L+
Sbjct: 74 ITLIDFIIELLS 85
>sp|P28255|YCF19_GALSU Uncharacterized protein ycf19 OS=Galdieria sulphuraria GN=ycf19
PE=3 SV=1
Length = 98
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 119 LNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNII 178
L L ++ + ++ IY L +RV L+W I W QP ++ L DPYLNLFR +
Sbjct: 6 LFVILKIILGVITEFCRIYLFALSIRVFLAWIVTINWYTQPYIVLKKLTDPYLNLFRGTL 65
Query: 179 PPVFDTLDVSPLLAFAVLGTLAQIL 203
P + +D S +L F L + ++L
Sbjct: 66 PLILG-MDFSSMLGFLFLECVIKLL 89
>sp|Q1XDD4|YCF19_PORYE Uncharacterized protein ycf19 OS=Porphyra yezoensis GN=ycf19 PE=3
SV=1
Length = 95
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 148 SWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSR 207
+WFP + W +P ++ + DPYL LFR IPP+F +D+SP+L L L I R
Sbjct: 33 AWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCLMVIFNNVR 91
>sp|P51353|YCF19_PORPU Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3
SV=1
Length = 95
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 148 SWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSR 207
+WFP + W +P ++ + DPYL LFR IPP+F +D+SP+L L L I R
Sbjct: 33 AWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCLMVIFNNVR 91
>sp|O31729|YLMG_BACSU Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain
168) GN=ylmG PE=3 SV=1
Length = 90
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 134 LDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAF 193
+ IYS L++ + +SW P+ E + +C+PYL FR IIPP+ LD+SP++A
Sbjct: 14 ITIYSFALIIYIFMSWVPSTR-ETAVGRFLASICEPYLEPFRKIIPPI-AMLDISPIVAI 71
Query: 194 AVL 196
VL
Sbjct: 72 LVL 74
>sp|Q11WK3|GUAA_CYTH3 GMP synthase [glutamine-hydrolyzing] OS=Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469) GN=guaA PE=3 SV=1
Length = 509
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 38 AAATSSSSSLPTLP--LKTPKITPLSPLLNDSTRTVTTLLSLSGFLLK--------FAIS 87
+A S ++ LP +K + PL+ L D R V L + +LK AI
Sbjct: 336 SATIKSHHNVGGLPEKMKLKIVEPLNTLFKDEVRRVGKTLGIDDIILKRHPFPGPGLAIR 395
Query: 88 KIPTLPQPTTNLVQSVGPLFFAALRER-------PSGSLNTPLTVVAAGLAKWLDIYSGV 140
+ + ++Q V +F + L+E+ +G++ P V + G+ Y V
Sbjct: 396 ILGDITAEKVAVLQEVDYIFISRLKEKGLYDQVWQAGAILLP--VKSVGVMGDERTYENV 453
Query: 141 LLVRVLLSWFP-NIPWERQPLSAIRDLCDPYLNLFRNIIPPVFD 183
+ +R + S W P + D+ + +N + + V+D
Sbjct: 454 VALRAVSSMDGMTADWIHLPYDFLADISNEIINRVKGVNRVVYD 497
>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens
GN=LRP4 PE=1 SV=4
Length = 1905
Score = 34.3 bits (77), Expect = 0.66, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 19 PKTLHQSPCRASPSFLPIKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRTVTTLLSLS 78
P PC P +P AT S P LP TP + L + +TRT T+L +
Sbjct: 1640 PDEPDSRPCSLVPGLVPPAPRATGMSEKSPVLP-----NTPPTTLYSSTTRTRTSLEEVE 1694
Query: 79 G 79
G
Sbjct: 1695 G 1695
>sp|Q575S8|CYGB2_DANRE Cytoglobin-2 OS=Danio rerio GN=cygb2 PE=2 SV=1
Length = 179
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 112 RERPSGSLNTPLTVVAAGLAK--WLDIYSGV--LLVRVLLSWFPNIPWERQPLSAIRDLC 167
RERP PLT V G+ K W +Y+ + V +L+ +F N P +Q S +D+
Sbjct: 13 RERPE-----PLTDVERGIIKDTWARVYASCEDVGVTILIRFFVNFPSAKQYFSQFQDME 67
Query: 168 DP 169
DP
Sbjct: 68 DP 69
>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2
Length = 2114
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 26 PCRASPSFLPIKAAAT---SSSSSLPTLPLKTPKITPLSPLLN 65
PC SP+ P+ AA +S T+ +KTP+ TP+ P+ N
Sbjct: 1984 PCPISPTLSPLPEAAAPPRGRPTSFVTVRVKTPRRTPIMPMAN 2026
>sp|P25254|Y392_PSEAE Uncharacterized protein PA0392 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0392
PE=3 SV=2
Length = 197
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 133 WLDIYSGVLLVRVLLSWFPNIPWERQPLSA-IRDLCDPYLNLFRNIIPPVFDTLDVSPLL 191
+L ++ L++ V+LSW P P + + +C+P L FR ++P + LD+SP+
Sbjct: 111 FLKVFFFALIISVILSWVA--PGSYNPGAQLVNQICEPLLMPFRKLLPNL-GGLDLSPIF 167
Query: 192 AFAVL 196
AF L
Sbjct: 168 AFLAL 172
>sp|A3MU00|SYL_PYRCJ Leucine--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM 11548
/ VA1) GN=leuS PE=3 SV=1
Length = 946
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 62 PLLNDSTRTVTTLLSLSGFLLKFAISKI-PTLPQPTTNLVQSVGPLFFAALRERPSGSLN 120
P L ++TR V + G + + + +I P LP+P ++V++V L+FA
Sbjct: 363 PALEEATREVYSAEYTRGVVREDVVDRIAPHLPEPARSMVRAVFKLYFAG---------- 412
Query: 121 TPLTVVAAGLAKWL 134
P+ ++KWL
Sbjct: 413 RPVKEAREFISKWL 426
>sp|Q2Y0E8|CAPSD_APRVF Putative major capsid protein VP3 OS=Aedes pseudoscutellaris
reovirus (isolate France) GN=S3 PE=3 SV=1
Length = 1202
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 33 FLPIKAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRT 70
F + A+A S+++ LPT+P IT +SPLL TRT
Sbjct: 278 FYDVDASAISNNAILPTIP----TITGVSPLLRIDTRT 311
>sp|Q12150|CSF1_YEAST Protein CSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CSF1 PE=3 SV=1
Length = 2958
Score = 30.4 bits (67), Expect = 9.3, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 21 TLHQSPCRASPSFLPI----------KAAATSSSSSLPTLPLKTPKITPLSPLLNDSTRT 70
T+H SP P LP+ A + SSS+PTLPL T T + ++ D
Sbjct: 1095 TIHDSPYHRCPFLLPLFYQDSDTYQNLYGAIAPSSSIPTLPLPTLPDT-IDYIIEDIVGE 1153
Query: 71 VTTLLSLSGFLLKFAISKIPTLPQPT 96
TLL + K ++ P+ +P+
Sbjct: 1154 YATLLETTN-PFKNIFAETPSTMEPS 1178
>sp|A2AQ25|SKT_MOUSE Sickle tail protein OS=Mus musculus GN=Skt PE=1 SV=1
Length = 1946
Score = 30.4 bits (67), Expect = 9.8, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 40 ATSSSSSLPTLPLKTPKI--TPLSPLLNDSTRTVTTLLSLSGFLLKF 84
A+ SS+LP P P I TPLSP S + + + S+S LKF
Sbjct: 1820 ASGDSSNLPNAPATKPSIASTPLSPQAGRSAHSASLIPSVSNGSLKF 1866
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,468,996
Number of Sequences: 539616
Number of extensions: 2985918
Number of successful extensions: 8578
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 8501
Number of HSP's gapped (non-prelim): 126
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)