Query 028405
Match_columns 209
No_of_seqs 127 out of 1122
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 11:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02325 YGGT: YGGT family; I 99.8 1.5E-19 3.3E-24 131.7 8.5 74 130-205 1-74 (75)
2 COG0762 Predicted integral mem 99.7 3E-17 6.5E-22 126.0 10.4 79 129-208 13-91 (96)
3 PF14494 DUF4436: Domain of un 34.7 2.8E+02 0.0061 25.1 8.5 87 108-200 156-245 (256)
4 PF05663 DUF809: Protein of un 33.4 26 0.00057 28.4 1.5 17 137-153 30-46 (138)
5 PF10859 DUF2660: Protein of u 24.1 58 0.0012 25.1 1.9 17 160-176 48-64 (86)
6 PF02194 PXA: PXA domain; Int 19.4 4.9E+02 0.011 20.9 7.5 63 134-200 8-70 (185)
7 PF04124 Dor1: Dor1-like famil 14.4 5.2E+02 0.011 23.5 6.2 48 157-204 263-330 (338)
8 PHA02845 hypothetical protein; 14.0 2.2E+02 0.0048 22.4 3.1 32 164-201 31-62 (91)
9 PF11204 DUF2985: Protein of u 11.3 7.3E+02 0.016 19.0 5.2 38 138-175 22-70 (81)
10 PF08113 CoxIIa: Cytochrome c 11.2 2.6E+02 0.0055 18.3 2.3 26 113-138 3-28 (34)
No 1
>PF02325 YGGT: YGGT family; InterPro: IPR003425 This family represents Ycf19. It is associated with phototrophic organisms and may therefore play a role in photosynthesis, despite its wider association with bacteria outside of the cyanobacteria. ; GO: 0016020 membrane
Probab=99.80 E-value=1.5e-19 Score=131.74 Aligned_cols=74 Identities=39% Similarity=0.636 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHhhhHHHhhhhhhcCCCCCCcChHHHHHHHHHHHHHHHHHh
Q 028405 130 LAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTF 205 (209)
Q Consensus 130 I~~ll~IY~~lLiIR~ILSW~~~~~~~np~~q~I~kLTEPiL~P~RRiIPpi~GgIDfSPLValLlL~lL~~lL~~ 205 (209)
++.++++|.+++++|+++||++. +++|++.++++++|||+++|+||++|+. |++|+||+++++++++++.++.+
T Consensus 1 l~~~~~~~~~~i~~r~ilsw~~~-~~~~~~~~~i~~~TeP~l~p~r~~ip~~-g~iD~S~lv~~~~l~~l~~~l~~ 74 (75)
T PF02325_consen 1 LNTLLSIYIWLIILRFILSWFPA-NPYNPFVQFIYRITEPILRPFRRIIPPI-GGIDFSPLVALIVLQFLKIILVG 74 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCc-cccChHHHHHHHHhhHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999 5789999999999999999999999998 89999999999999999998865
No 2
>COG0762 Predicted integral membrane protein [Function unknown]
Probab=99.73 E-value=3e-17 Score=126.03 Aligned_cols=79 Identities=34% Similarity=0.556 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHhhhHHHhhhhhhcCCCCCCcChHHHHHHHHHHHHHHHHHhhcC
Q 028405 129 GLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFSRG 208 (209)
Q Consensus 129 LI~~ll~IY~~lLiIR~ILSW~~~~~~~np~~q~I~kLTEPiL~P~RRiIPpi~GgIDfSPLValLlL~lL~~lL~~~~g 208 (209)
.+.+.++.|.+.++++.+++|+++.+|.+++.++++++|||+++|+||++|+. ||+|+||+++++++++++.++.+.+|
T Consensus 13 ~l~~~i~~~~~~~ii~~~lsw~~~~~~~~~i~~~l~~lteP~L~p~Rr~ip~l-ggiD~Spiv~iliL~~l~~~l~~~~~ 91 (96)
T COG0762 13 VLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPL-GGIDFSPIVALLILQFLQFFLIRLLG 91 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCHHHHHHHHhhHhHHHHHHhCCCc-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999987767999999999999999999999998 99999999999999999999887664
No 3
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=34.72 E-value=2.8e+02 Score=25.12 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=46.6
Q ss_pred ehccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccHHHHHHHhhhHHHhhhhhhcC---CCCCC
Q 028405 108 FAALRERPSGSLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIP---PVFDT 184 (209)
Q Consensus 108 ~a~~~~~~~g~~~~~~~~li~LI~~ll~IY~~lLiIR~ILSW~~~~~~~np~~q~I~kLTEPiL~P~RRiIP---pi~Gg 184 (209)
+....+|..|.+. +..++.++.+.+....+..-+.. +...-.+ .+++-..+.-+=.-+-|+|+.+| |+|..
T Consensus 156 ~~i~l~Rs~~~~~--F~~~i~~vm~~L~~~al~~ai~~---~~~rr~~-~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~ 229 (256)
T PF14494_consen 156 VDITLKRSRGVLF--FALFICLVMWALATLALFVAIQV---LRRRRKF-EPPMLTWMAAMLFALPPLRNILPGAPPIGSW 229 (256)
T ss_pred EEEEEEccCccee--hHHHHHHHHHHHHHHHHHHHHHH---HhCcccc-ccchHHHHHHHHHhhhhHhccCCCCCCCcce
Confidence 3444556655554 34455555555554444333333 3222112 23444455555566789999997 55337
Q ss_pred cChHHHHHHHHHHHHH
Q 028405 185 LDVSPLLAFAVLGTLA 200 (209)
Q Consensus 185 IDfSPLValLlL~lL~ 200 (209)
+|+..++..+++..+-
T Consensus 230 iD~~~vlW~~i~l~~~ 245 (256)
T PF14494_consen 230 IDFAGVLWVLIALVAS 245 (256)
T ss_pred EeeeehHHHHHHHHHH
Confidence 9997766655554443
No 4
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=33.39 E-value=26 Score=28.42 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhcccCC
Q 028405 137 YSGVLLVRVLLSWFPNI 153 (209)
Q Consensus 137 Y~~lLiIR~ILSW~~~~ 153 (209)
..++++..+|+|||.+.
T Consensus 30 layllmahiwlswfsnn 46 (138)
T PF05663_consen 30 LAYLLMAHIWLSWFSNN 46 (138)
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 45678999999999874
No 5
>PF10859 DUF2660: Protein of unknown function (DUF2660); InterPro: IPR022589 This is a bacterial group of proteins with unknown function found in Rickettsiales.
Probab=24.08 E-value=58 Score=25.12 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.7
Q ss_pred HHHHHHhhhHHHhhhhh
Q 028405 160 LSAIRDLCDPYLNLFRN 176 (209)
Q Consensus 160 ~q~I~kLTEPiL~P~RR 176 (209)
|+|+|++||-+++.|.|
T Consensus 48 WkFLYDiTe~ILnkFsk 64 (86)
T PF10859_consen 48 WKFLYDITETILNKFSK 64 (86)
T ss_pred HHHHHHHHHHHHHhhcH
Confidence 47999999999998864
No 6
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=19.39 E-value=4.9e+02 Score=20.95 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCccHHHHHHHhhhHHHhhhhhhcCCCCCCcChHHHHHHHHHHHHH
Q 028405 134 LDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLA 200 (209)
Q Consensus 134 l~IY~~lLiIR~ILSW~~~~~~~np~~q~I~kLTEPiL~P~RRiIPpi~GgIDfSPLValLlL~lL~ 200 (209)
++-+.-.++-.++.+|+........+.+-+++...-.++-+.+.+ ..+|+..+++-=++..+.
T Consensus 8 l~~li~~I~rdfV~sWY~~Is~d~~F~~ei~~~l~~~~~~l~~R~----~~vD~~~ll~~~l~~~l~ 70 (185)
T PF02194_consen 8 LHELIDLILRDFVNSWYSKISPDPEFPNEIRRILRHALRELSQRL----SRVDLVKLLLDDLLPILT 70 (185)
T ss_pred HHHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHH
Confidence 344444556778999998764323333445555555555554444 357999887655555543
No 7
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=14.42 E-value=5.2e+02 Score=23.55 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=34.2
Q ss_pred ccHHHHHHHhhhHHHhhhhhhcCCC------------------CC--CcChHHHHHHHHHHHHHHHHH
Q 028405 157 RQPLSAIRDLCDPYLNLFRNIIPPV------------------FD--TLDVSPLLAFAVLGTLAQILT 204 (209)
Q Consensus 157 np~~q~I~kLTEPiL~P~RRiIPpi------------------~G--gIDfSPLValLlL~lL~~lL~ 204 (209)
+.+..+..+..+.++.-+++.+|.+ +| |.||.++++-.+-..+.....
T Consensus 263 ~~l~sw~~~~v~~~l~~L~~~L~~~~~~~~~sll~q~~y~~~S~~r~g~DF~~ll~~~~~~~~~~~f~ 330 (338)
T PF04124_consen 263 SELFSWALHRVSSFLETLEMYLPRVDESSRESLLTQLMYFASSFGRVGADFRPLLAPLFERAVLNLFE 330 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhcCccCCChHHHhHHHHHHHHHHHHH
Confidence 3556677778888888888887754 12 689999888877776665543
No 8
>PHA02845 hypothetical protein; Provisional
Probab=14.05 E-value=2.2e+02 Score=22.40 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHhhhHHHhhhhhhcCCCCCCcChHHHHHHHHHHHHHH
Q 028405 164 RDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQ 201 (209)
Q Consensus 164 ~kLTEPiL~P~RRiIPpi~GgIDfSPLValLlL~lL~~ 201 (209)
..=.-|+++|++|++ +|+.-.+..+...+++.
T Consensus 31 E~~~~~llRP~~RLl------fDl~i~viVi~~~~iRl 62 (91)
T PHA02845 31 ENNHHYLFRPFIRLT------IDLILLIIVMIFLMIRI 62 (91)
T ss_pred HhcccHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 334568999999988 57766555544444433
No 9
>PF11204 DUF2985: Protein of unknown function (DUF2985); InterPro: IPR021369 This eukaryotic family of proteins has no known function.
Probab=11.27 E-value=7.3e+02 Score=18.97 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhccc----CCC-------CCccHHHHHHHhhhHHHhhhh
Q 028405 138 SGVLLVRVLLSWFP----NIP-------WERQPLSAIRDLCDPYLNLFR 175 (209)
Q Consensus 138 ~~lLiIR~ILSW~~----~~~-------~~np~~q~I~kLTEPiL~P~R 175 (209)
....++=++..|.+ ..+ ..+++.+.+..+|--.+.|.|
T Consensus 22 ~Ga~lfllL~g~~~~~~~~~s~r~~WiEi~sQILnALF~v~g~gl~P~R 70 (81)
T PF11204_consen 22 WGAMLFLLLCGMLNAMCHNKSPRDIWIEIDSQILNALFTVMGFGLHPWR 70 (81)
T ss_pred HHHHHHHHHHccchhccCCCccceEEEEehhHHHHHHHHHHhhccccHH
Confidence 33444445667777 221 136888889999999999987
No 10
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=11.17 E-value=2.6e+02 Score=18.35 Aligned_cols=26 Identities=27% Similarity=0.645 Sum_probs=15.3
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHH
Q 028405 113 ERPSGSLNTPLTVVAAGLAKWLDIYS 138 (209)
Q Consensus 113 ~~~~g~~~~~~~~li~LI~~ll~IY~ 138 (209)
++|.|-+.-++...+.++-.++..|.
T Consensus 3 ekp~Gal~vv~iLt~~ILvFWfgvf~ 28 (34)
T PF08113_consen 3 EKPKGALGVVMILTAFILVFWFGVFA 28 (34)
T ss_dssp -STHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeeeHHHHHHHHHHHHHHHHH
Confidence 45667666566666666665555553
Done!