Query 028405
Match_columns 209
No_of_seqs 127 out of 1122
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 14.9 1.1E+02 0.0036 19.1 2.3 25 113-137 3-27 (34)
2 2rf9_C ERBB receptor feedback 4.0 4.2E+02 0.014 18.6 1.7 42 13-54 6-47 (65)
3 1ku5_A HPHA, archaeal histon; 3.7 4.2E+02 0.015 17.6 1.5 35 171-206 9-43 (70)
4 3j1r_A Archaeal adhesion filam 3.4 4.6E+02 0.016 15.4 1.2 13 188-200 2-14 (26)
5 2kv5_A FST, putative uncharact 2.8 9.7E+02 0.033 14.6 2.3 19 187-205 9-27 (33)
6 2i15_A A05_ORF129, hypothetica 2.4 1.6E+03 0.054 17.2 3.6 15 107-121 80-94 (135)
7 2rfe_E ERBB receptor feedback 2.0 7.4E+02 0.025 15.8 1.0 7 29-35 7-13 (40)
8 1elk_A Target of MYB1; superhe 1.7 6.9E+02 0.023 19.2 0.6 26 146-171 4-29 (157)
9 1aym_4 HRV16, human rhinovirus 1.7 5.4E+02 0.019 18.2 0.0 17 164-180 50-66 (68)
10 1xwj_B Talin, metavinculin; ce 1.7 1E+03 0.035 13.1 1.2 17 63-79 5-21 (26)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=14.95 E-value=1.1e+02 Score=19.07 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=17.5
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHH
Q 028405 113 ERPSGSLNTPLTVVAAGLAKWLDIY 137 (209)
Q Consensus 113 ~~~~g~~~~~~~~li~LI~~ll~IY 137 (209)
++|.|.+..++..-..++-.++..|
T Consensus 3 ~~l~GTl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 3 EKPKGALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceehHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777
No 2
>2rf9_C ERBB receptor feedback inhibitor 1; kinase domain, inhibition, dimer, peptide, alternative splicing, anti-oncogene, ATP-binding, cell cycle; 3.50A {Homo sapiens}
Probab=3.97 E-value=4.2e+02 Score=18.58 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=11.5
Q ss_pred CCCcCCCCccCCCCCCCCCCcccccchhccCCCCCCccccCC
Q 028405 13 PPFLSNPKTLHQSPCRASPSFLPIKAAATSSSSSLPTLPLKT 54 (209)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (209)
.|.-.-||-.....++|.+|++.+....+..-.+++.|....
T Consensus 6 ~PPkvPPRepls~~~sRtpSP~slp~y~~~~mp~TqSFa~dP 47 (65)
T 2rf9_C 6 RPPKVPPREPLSPSNSRTPSPKSLPSYLNGVMPPTQSFAPDP 47 (65)
T ss_dssp ---------------------CCCCCCTTSCCCSCEECTTCT
T ss_pred CCCCCCCccccCCCCCCCCCCcccccccccccccccccccCc
Confidence 344556666666667888888876655554444455555444
No 3
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=3.67 E-value=4.2e+02 Score=17.59 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=26.7
Q ss_pred HhhhhhhcCCCCCCcChHHHHHHHHHHHHHHHHHhh
Q 028405 171 LNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILTFS 206 (209)
Q Consensus 171 L~P~RRiIPpi~GgIDfSPLValLlL~lL~~lL~~~ 206 (209)
..|++|++-.. |.-.+|+-+...+..++..++.+.
T Consensus 9 ~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v 43 (70)
T 1ku5_A 9 IAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEI 43 (70)
T ss_dssp HHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHH
Confidence 45677777665 778899998888888888877654
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=3.35 E-value=4.6e+02 Score=15.37 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 028405 188 SPLLAFAVLGTLA 200 (209)
Q Consensus 188 SPLValLlL~lL~ 200 (209)
||+++.+++.++.
T Consensus 2 spiVA~~lLIvia 14 (26)
T 3j1r_A 2 SPVIATLLLILIA 14 (26)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 5777766665543
No 5
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=2.81 E-value=9.7e+02 Score=14.64 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 028405 187 VSPLLAFAVLGTLAQILTF 205 (209)
Q Consensus 187 fSPLValLlL~lL~~lL~~ 205 (209)
+.|+++-+++.++...|..
T Consensus 9 IaPivVGvvl~L~d~WLn~ 27 (33)
T 2kv5_A 9 IAPIFVGLVLEMISRVLDE 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4678888888877776643
No 6
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=2.35 E-value=1.6e+03 Score=17.20 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=6.3
Q ss_pred eehccccCCCCCchh
Q 028405 107 FFAALRERPSGSLNT 121 (209)
Q Consensus 107 ~~a~~~~~~~g~~~~ 121 (209)
.+|.++|+|.|..+.
T Consensus 80 ~la~~v~npk~~~~~ 94 (135)
T 2i15_A 80 LLAVLVDNPKGDVKS 94 (135)
T ss_dssp C-------CCCCHHH
T ss_pred HHHHHHhCCcchHHH
Confidence 358899999999883
No 7
>2rfe_E ERBB receptor feedback inhibitor 1; kinase domain, inhibition, dimer, peptide, alternative splicing, anti-oncogene, ATP-binding, cell cycle; 2.90A {Homo sapiens} PDB: 2rfd_C
Probab=1.98 E-value=7.4e+02 Score=15.80 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=0.4
Q ss_pred CCCCccc
Q 028405 29 ASPSFLP 35 (209)
Q Consensus 29 ~~~~~~~ 35 (209)
|.|+++.
T Consensus 7 RtpSP~~ 13 (40)
T 2rfe_E 7 RTPSPKS 13 (40)
T ss_dssp ------C
T ss_pred CCCCCcc
Confidence 3344443
No 8
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=1.74 E-value=6.9e+02 Score=19.17 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=15.5
Q ss_pred HhhcccCCCCCccHHHHHHHhhhHHH
Q 028405 146 LLSWFPNIPWERQPLSAIRDLCDPYL 171 (209)
Q Consensus 146 ILSW~~~~~~~np~~q~I~kLTEPiL 171 (209)
.|.|+...++..++-+.|.+.|++-+
T Consensus 4 ~m~f~~~~p~~s~~~~~IekATs~~l 29 (157)
T 1elk_A 4 GSDFLLGNPFSSPVGQRIEKATDGSL 29 (157)
T ss_dssp -CCCCCSCGGGSHHHHHHHHHTCTTC
T ss_pred cCCCcCCCCCCcHHHHHHHHHcCCCC
Confidence 46677664333455567778887653
No 9
>1aym_4 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_4* 1d3e_4 1ncr_D* 1nd2_D* 1qju_4* 1qjx_4* 1qjy_4* 1nd3_D* 1fpn_4* 1v9u_4* 3dpr_D* 1r1a_4* 2hwd_4* 2hwe_4* 2hwf_4*
Probab=1.73 E-value=5.4e+02 Score=18.16 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHhhhHHHhhhhhhcCC
Q 028405 164 RDLCDPYLNLFRNIIPP 180 (209)
Q Consensus 164 ~kLTEPiL~P~RRiIPp 180 (209)
.|.|||+..-+.+-+|+
T Consensus 50 sKFT~Pv~dv~~~~~p~ 66 (68)
T 1aym_4 50 SKFTDPVKDVLEKGIPT 66 (68)
T ss_dssp -----------------
T ss_pred hhhcchHHHHHhccccc
Confidence 56788888887777665
No 10
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=1.69 E-value=1e+03 Score=13.14 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=12.7
Q ss_pred CcccchhHHHHHHHHHH
Q 028405 63 LLNDSTRTVTTLLSLSG 79 (209)
Q Consensus 63 ~~~~~~r~~~~~~~~~~ 79 (209)
.++|..|.|+.-++-.+
T Consensus 5 el~~~~r~v~ekV~~vl 21 (26)
T 1xwj_B 5 ELIESARKVSEKVSHVL 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888999888776554
Done!