Query 028405
Match_columns 209
No_of_seqs 127 out of 1122
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 18:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028405.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028405hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i15a1 a.291.1.1 (A:1-129) Hy 5.7 2.6E+02 0.019 19.6 3.6 19 107-125 74-92 (129)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 4.9 2.9E+02 0.021 15.0 2.8 17 128-144 8-24 (30)
3 d1wxia1 c.26.2.1 (A:2-275) NH3 2.9 2.7E+02 0.02 21.6 1.9 43 158-201 17-65 (274)
4 d1kqpa_ c.26.2.1 (A:) NH3-depe 2.8 6.6E+02 0.048 19.0 4.3 42 158-201 17-64 (271)
5 d2cqea1 g.66.1.1 (A:458-513) Z 2.3 2.5E+02 0.018 17.6 0.6 12 60-71 21-32 (56)
6 d1gjja2 a.140.1.1 (A:111-153) 2.0 3.8E+02 0.028 15.6 1.2 13 59-71 19-31 (43)
7 d2fyuk1 f.23.15.1 (K:1-53) Sub 1.9 4.2E+02 0.03 16.3 1.3 10 144-153 39-48 (53)
8 d2axtz1 f.17.5.1 (Z:1-62) Phot 1.7 9.7E+02 0.071 14.8 3.3 33 124-156 2-34 (62)
9 d1uiza_ d.80.1.3 (A:) Micropha 1.7 5.8E+02 0.042 16.6 2.0 59 48-119 2-60 (115)
10 d2axti1 f.23.37.1 (I:1-35) Pho 1.7 8.1E+02 0.059 13.6 3.6 29 130-158 4-32 (35)
No 1
>d2i15a1 a.291.1.1 (A:1-129) Hypothetical protein MPN423 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=5.71 E-value=2.6e+02 Score=19.56 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=8.1
Q ss_pred eehccccCCCCCchhHHHH
Q 028405 107 FFAALRERPSGSLNTPLTV 125 (209)
Q Consensus 107 ~~a~~~~~~~g~~~~~~~~ 125 (209)
.+|+++|+|.|-++.--..
T Consensus 74 llavlvdnpkgdvksccqs 92 (129)
T d2i15a1 74 LLAVLVDNPKGDVKSCCQS 92 (129)
T ss_dssp C-------CCCCHHHHHHH
T ss_pred hhheeccCCCccHHHHHHH
Confidence 3588999999999844333
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.89 E-value=2.9e+02 Score=15.02 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028405 128 AGLAKWLDIYSGVLLVR 144 (209)
Q Consensus 128 ~LI~~ll~IY~~lLiIR 144 (209)
.+...++.++.+.++.|
T Consensus 8 ~ifac~i~lfffaiffr 24 (30)
T d2axtt1 8 FIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34455666666666544
No 3
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}
Probab=2.89 E-value=2.7e+02 Score=21.56 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=26.3
Q ss_pred cHHHHHHHhhhHHHhhhhh--hcCC----CCCCcChHHHHHHHHHHHHHH
Q 028405 158 QPLSAIRDLCDPYLNLFRN--IIPP----VFDTLDVSPLLAFAVLGTLAQ 201 (209)
Q Consensus 158 p~~q~I~kLTEPiL~P~RR--iIPp----i~GgIDfSPLValLlL~lL~~ 201 (209)
.+-..+.++++.+=+-+++ ..-. +-||+| |.+++.++-..+..
T Consensus 17 ~~ee~i~~~v~~L~dy~~k~~~~k~vVvGlSGGID-Sav~A~L~~~Alg~ 65 (274)
T d1wxia1 17 NAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQD-STLAGKLCQMAINE 65 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHH-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEECCCCHH-HHHHHHHHHHHHHH
Confidence 3455677777766555654 1221 127999 78888777666543
No 4
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=2.84 E-value=6.6e+02 Score=18.99 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=25.2
Q ss_pred cHHHHHHHhhhHHHhhhhh------hcCCCCCCcChHHHHHHHHHHHHHH
Q 028405 158 QPLSAIRDLCDPYLNLFRN------IIPPVFDTLDVSPLLAFAVLGTLAQ 201 (209)
Q Consensus 158 p~~q~I~kLTEPiL~P~RR------iIPpi~GgIDfSPLValLlL~lL~~ 201 (209)
.+-..+.++++.+-+-++| ++.- -||+| |.+++.++-..+..
T Consensus 17 d~~e~i~~~v~~lrdy~~ksg~~gvvvgl-SGGID-SAv~a~L~~~A~~~ 64 (271)
T d1kqpa_ 17 DPKQEIEDRVNFLKQYVKKTGAKGFVLGI-SGGQD-STLAGRLAQLAVES 64 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEC-CSSHH-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCeEEEEC-CCCHH-HHHHHHHHHHHHHH
Confidence 3456677777766556654 2222 28999 66777666555543
No 5
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.26 E-value=2.5e+02 Score=17.63 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=9.6
Q ss_pred CCCCcccchhHH
Q 028405 60 LSPLLNDSTRTV 71 (209)
Q Consensus 60 ~~~~~~~~~r~~ 71 (209)
||.++|+.||.+
T Consensus 21 SH~pLt~~t~~l 32 (56)
T d2cqea1 21 SHDPLTEETREL 32 (56)
T ss_dssp BCCCCCHHHHHH
T ss_pred cCCccCHHHHHH
Confidence 577899999875
No 6
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.00 E-value=3.8e+02 Score=15.63 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=9.4
Q ss_pred CCCCCcccchhHH
Q 028405 59 PLSPLLNDSTRTV 71 (209)
Q Consensus 59 ~~~~~~~~~~r~~ 71 (209)
..+-+-|+|||.|
T Consensus 19 ~~~GPIt~sTR~v 31 (43)
T d1gjja2 19 VNPGPIVGTTRKL 31 (43)
T ss_dssp CCCCCCCSSEHHH
T ss_pred CCCCCcCcchHHH
Confidence 3456688999976
No 7
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.87 E-value=4.2e+02 Score=16.29 Aligned_cols=10 Identities=50% Similarity=1.275 Sum_probs=7.8
Q ss_pred HHHhhcccCC
Q 028405 144 RVLLSWFPNI 153 (209)
Q Consensus 144 R~ILSW~~~~ 153 (209)
|.+++|+|-.
T Consensus 39 klil~yvPyy 48 (53)
T d2fyuk1 39 RLILDWVPYI 48 (53)
T ss_dssp HHHHTSSSSC
T ss_pred HHHHhhhhhh
Confidence 6888998764
No 8
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.71 E-value=9.7e+02 Score=14.80 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 028405 124 TVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWE 156 (209)
Q Consensus 124 ~~li~LI~~ll~IY~~lLiIR~ILSW~~~~~~~ 156 (209)
..+.++.-..+-.+.+++++-+=.-.-.+++|.
T Consensus 2 ti~fQl~v~ALi~~SF~lVVgVPV~~ASP~gW~ 34 (62)
T d2axtz1 2 TILFQLALAALVILSFVMVIGVPVAYASPQDWD 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred eeHHHHHHHHHHHHHHHHheeceEEEECCCccc
Confidence 344455555566677777776655555555664
No 9
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=1.70 E-value=5.8e+02 Score=16.57 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred CccccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHhhCCCCCCccccccccccceeehccccCCCCCc
Q 028405 48 PTLPLKTPKITPLSPLLNDSTRTVTTLLSLSGFLLKFAISKIPTLPQPTTNLVQSVGPLFFAALRERPSGSL 119 (209)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~g~~ 119 (209)
|.+.+++......... .+.-.+++.+...+.+||+.-...+....+..|+..-| |..++
T Consensus 2 P~i~i~TNv~~~~~~~------------~~~~~ls~~ia~~lgKpe~~vmv~v~~~~~m~fggs~~-P~a~~ 60 (115)
T d1uiza_ 2 PVFTIRTNVCRDSVPD------------TLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTD-PCAVC 60 (115)
T ss_dssp CEEEEEESSCGGGSCT------------THHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCS-SCEEE
T ss_pred CeEEEEecCCchhChH------------HHHHHHHHHHHHHHCCCHHHEEEEEcCCceEEeCCCCC-cEEEE
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.66 E-value=8.1e+02 Score=13.64 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 028405 130 LAKWLDIYSGVLLVRVLLSWFPNIPWERQ 158 (209)
Q Consensus 130 I~~ll~IY~~lLiIR~ILSW~~~~~~~np 158 (209)
++.+........+.-++..++.+++-+||
T Consensus 4 LKi~Vy~vV~fFv~lFiFGFLSnDP~RnP 32 (35)
T d2axti1 4 LKITVYIVVTFFVLLFVFGFLSGDPARNP 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTCSS
T ss_pred EEEehhhHHHHHHHHHHHhhccCCCCCCC
Done!