Query 028407
Match_columns 209
No_of_seqs 161 out of 1092
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oox_A Putative 2OG-Fe(II) oxy 100.0 1.4E-52 4.8E-57 361.1 18.4 185 5-197 119-309 (312)
2 1gp6_A Leucoanthocyanidin diox 100.0 2.2E-51 7.4E-56 359.5 18.0 189 4-201 156-349 (356)
3 1odm_A Isopenicillin N synthas 100.0 7E-51 2.4E-55 353.1 19.1 187 5-199 128-326 (331)
4 1w9y_A 1-aminocyclopropane-1-c 100.0 2.4E-51 8.2E-56 354.4 13.5 187 6-201 103-297 (319)
5 1dcs_A Deacetoxycephalosporin 100.0 7.3E-49 2.5E-53 337.8 8.2 178 10-200 112-308 (311)
6 3on7_A Oxidoreductase, iron/as 100.0 1.6E-46 5.5E-51 318.9 14.5 171 9-197 98-277 (280)
7 2rg4_A Uncharacterized protein 93.9 1.1 3.6E-05 35.7 12.0 42 109-162 166-209 (216)
8 2hbt_A EGL nine homolog 1; pro 91.2 0.43 1.5E-05 38.8 6.4 82 59-160 119-213 (247)
9 3dkq_A PKHD-type hydroxylase S 91.2 0.19 6.5E-06 41.0 4.1 78 57-159 99-194 (243)
10 3i3q_A Alpha-ketoglutarate-dep 90.3 1.9 6.5E-05 34.2 9.2 82 58-159 106-202 (211)
11 2iuw_A Alkylated repair protei 87.6 1.9 6.4E-05 34.8 7.5 90 58-160 127-230 (238)
12 3s57_A Alpha-ketoglutarate-dep 87.4 1.5 5.2E-05 34.4 6.7 85 58-158 101-201 (204)
13 3tht_A Alkylated DNA repair pr 87.1 1 3.6E-05 38.5 6.0 93 57-162 198-315 (345)
14 3itq_A Prolyl 4-hydroxylase, a 80.9 4 0.00014 32.4 6.5 107 26-160 90-212 (216)
15 2jig_A Prolyl-4 hydroxylase; h 75.2 5.3 0.00018 31.4 5.7 47 111-161 170-218 (224)
16 2x4k_A 4-oxalocrotonate tautom 35.1 31 0.001 20.4 2.8 25 23-47 18-42 (63)
17 3abf_A 4-oxalocrotonate tautom 31.8 42 0.0014 20.0 3.1 25 23-47 16-40 (64)
18 1otf_A 4-oxalocrotonate tautom 29.8 42 0.0014 19.9 2.8 24 23-46 15-38 (62)
19 2opa_A Probable tautomerase YW 28.9 45 0.0015 19.7 2.8 24 23-46 15-38 (61)
20 3m20_A 4-oxalocrotonate tautom 26.5 66 0.0022 19.4 3.3 25 23-47 14-38 (62)
21 3ry0_A Putative tautomerase; o 24.0 61 0.0021 19.6 2.8 25 22-46 14-38 (65)
22 3m21_A Probable tautomerase HP 22.6 67 0.0023 19.6 2.8 25 22-46 17-41 (67)
23 1gyx_A YDCE, B1461, hypothetic 21.2 72 0.0025 20.1 2.8 26 22-47 15-40 (76)
24 2k9u_B Filamin-binding LIM pro 21.1 20 0.00069 18.4 -0.0 11 2-12 11-21 (26)
25 2fzp_A NRDP1, ring finger prot 20.0 19 0.00063 26.3 -0.4 24 121-144 13-41 (144)
No 1
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=1.4e-52 Score=361.09 Aligned_cols=185 Identities=32% Similarity=0.570 Sum_probs=167.4
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccCCccceeeeccccCCCCCCCCCcccccccCCC
Q 028407 5 FLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDY 84 (209)
Q Consensus 5 ~~~l~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~rl~~Yp~~~~~~~~~~~g~~~HtD~ 84 (209)
..+-..|+||+.+++|+++|.+++..|+++||++||+++++|. ..+..+.+.+|++||||.+ .++.. +|+++|||+
T Consensus 119 ~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~~~~~~lr~~~Ypp~~-~~~~~-~g~~~HtD~ 194 (312)
T 3oox_A 119 VWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK--PTVQDGNSVLRLLHYPPIP-KDATG-VRAGAHGDI 194 (312)
T ss_dssp CCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTH--HHHTTCCCEEEEEEECCCS-SCCC---CEEEECCC
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH--HHhcCCcceeeeEecCCCC-CCcCC-cCccceecC
Confidence 3444578999999999999999999999999999999999998 6777778999999999944 33334 899999999
Q ss_pred CceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeecccccccCC-----CCCceEEEEccC
Q 028407 85 GLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGT-----GRERYSIAFFVE 159 (209)
Q Consensus 85 ~~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~~~-----~~~R~Si~~F~~ 159 (209)
|+||||+||+++||||+..+| +|++|+|.||++|||+||+||+||||+|||+.|||+++ +.+|||++||++
T Consensus 195 g~lTlL~qd~v~GLqV~~~~g----~W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~ 270 (312)
T 3oox_A 195 NTITLLLGAEEGGLEVLDRDG----QWLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLH 270 (312)
T ss_dssp SSEEEEECCTTSCEEEECTTS----CEEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEEC
T ss_pred ceEEEEeEcCcCceEEECCCC----cEEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEec
Confidence 999999999999999997764 59999999999999999999999999999999999943 467999999999
Q ss_pred CCCCCeEecCCCCCCCCCCCCCC-CccHHHHHHHHHHhh
Q 028407 160 PSHDCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKDT 197 (209)
Q Consensus 160 p~~d~~i~p~~~~~~~~~p~~y~-~~t~~e~~~~~~~~~ 197 (209)
|+.|++|+|+++++++++|++|+ ++|++||+..|+++.
T Consensus 271 P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~~ 309 (312)
T 3oox_A 271 FASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREI 309 (312)
T ss_dssp CCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHHH
T ss_pred CCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHHh
Confidence 99999999999999999999999 999999999998854
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=2.2e-51 Score=359.46 Aligned_cols=189 Identities=24% Similarity=0.382 Sum_probs=171.5
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccC---CccceeeeccccCCCCCCCCCcccccc
Q 028407 4 IFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLG---QAIATLRLLHYEGQISDPSKGMYGAGA 80 (209)
Q Consensus 4 ~~~~l~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~---~~~~~~rl~~Yp~~~~~~~~~~~g~~~ 80 (209)
+..+-.+|+||+.+++|+++|.+++..|+++|+++||+++++|. ..+. .+.+.+|++|||| +++++ ..+|+++
T Consensus 156 ~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~~~~~~~~~lrl~~YPp-~~~~~-~~~g~~~ 231 (356)
T 1gp6_A 156 SIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE--KEVGGLEELLLQMKINYYPK-CPQPE-LALGVEA 231 (356)
T ss_dssp GGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHH--HHTTHHHHCEEEEEEEEECC-CSSTT-TCCSEEE
T ss_pred ccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHhcccCCccceeeeeecCC-CCCcc-cccCcCC
Confidence 34455678999999999999999999999999999999999998 5655 4678999999999 44443 4689999
Q ss_pred cCCCCceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeeccccccc-CCCCCceEEEEccC
Q 028407 81 HSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVL-GTGRERYSIAFFVE 159 (209)
Q Consensus 81 HtD~~~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~-~~~~~R~Si~~F~~ 159 (209)
|||+|+||||+||.++||||+. + |+|++|+|.||++|||+||+||+||||+|||+.|||+ +++.+|||++||++
T Consensus 232 HtD~g~lTlL~qd~v~GLQV~~-~----g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~ 306 (356)
T 1gp6_A 232 HTDVSALTFILHNMVPGLQLFY-E----GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306 (356)
T ss_dssp ECCCSSEEEEEECSCCCEEEEE-T----TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEE
T ss_pred ccCCCeEEEEEEcCCCCeEEec-C----CcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeec
Confidence 9999999999999999999995 3 4699999999999999999999999999999999999 56789999999999
Q ss_pred CCCCC-eEecCCCCCCCCCCCCCCCccHHHHHHHHHHhhhccc
Q 028407 160 PSHDC-LVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADL 201 (209)
Q Consensus 160 p~~d~-~i~p~~~~~~~~~p~~y~~~t~~e~~~~~~~~~~~~~ 201 (209)
|+.|+ +|+|+++++++++|++|+++|++||+..++.+++..+
T Consensus 307 P~~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~ 349 (356)
T 1gp6_A 307 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349 (356)
T ss_dssp CCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcc
Confidence 99999 9999999999999999999999999999999888433
No 3
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=7e-51 Score=353.10 Aligned_cols=187 Identities=20% Similarity=0.268 Sum_probs=171.1
Q ss_pred ccccC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccCCccceee--ecccc------C--CCCCCC
Q 028407 5 FLCLC--FHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLR--LLHYE------G--QISDPS 72 (209)
Q Consensus 5 ~~~l~--~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~r--l~~Yp------~--~~~~~~ 72 (209)
..+-. +|+||+.+++|+++|.+++..|+++|+++||+++++|. ..++.+.+.+| ++||| | .|++++
T Consensus 128 ~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~~~~~~lr~~l~~YP~~~~~~p~~~~~~~~ 205 (331)
T 1odm_A 128 VWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFA--RHFKPDDTLASVVLIRYPYLDPYPEAAIKTAAD 205 (331)
T ss_dssp CCCCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTG--GGCCTTTCCCEEEEEEECCCSSCCGGGCEECTT
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH--HHhcCcHHHHHHHHhhCCCcccccccccCCCcc
Confidence 34444 78999999999999999999999999999999999998 67777889999 99999 6 355554
Q ss_pred CCcccccccCCCCceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeecccccccCCCCCce
Q 028407 73 KGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERY 152 (209)
Q Consensus 73 ~~~~g~~~HtD~~~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~~~~~~R~ 152 (209)
...+|+++|||+|+||||+||.++||||++++ | |++|+|.||++|||+||+||+||||+|||+.|||+.++.+||
T Consensus 206 ~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~~----g-Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~R~ 280 (331)
T 1odm_A 206 GTKLSFEWHEDVSLITVLYQSNVQNLQVETAA----G-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ 280 (331)
T ss_dssp SCEEEEEEECCSSSEEEEEECSSCCEEEEETT----E-EEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEECCCSCEE
T ss_pred ccccccccccCCCeEEEEeeCCCCCEEEEcCC----C-eEECCCCCCeEEEEccHHHHHHhCCEeeCCCceeCCCCCCEE
Confidence 34789999999999999999999999999763 6 999999999999999999999999999999999997788999
Q ss_pred EEEEccCCCCCCeEecCCCCCCCCCCCCCCCccHHHHHHHHHHhhhc
Q 028407 153 SIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHA 199 (209)
Q Consensus 153 Si~~F~~p~~d~~i~p~~~~~~~~~p~~y~~~t~~e~~~~~~~~~~~ 199 (209)
|++||++|+.|++|+|+++++++++ ++|++++++||++.++++.++
T Consensus 281 Sia~F~~P~~d~~i~pl~~~~~~~~-~~y~~~t~~e~l~~~~~~~~~ 326 (331)
T 1odm_A 281 SLPFFVNLGYDSVIDPFDPREPNGK-SDREPLSYGDYLQNGLVSLIN 326 (331)
T ss_dssp EEEEEECCCTTCBCCCCCTTSTTCC-CSSCCCBHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCEEeCCCccccccc-cCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999998877 899999999999999998865
No 4
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=2.4e-51 Score=354.40 Aligned_cols=187 Identities=26% Similarity=0.388 Sum_probs=163.0
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccC---CccceeeeccccCCCCCCCCCcccccccC
Q 028407 6 LCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLG---QAIATLRLLHYEGQISDPSKGMYGAGAHS 82 (209)
Q Consensus 6 ~~l~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~---~~~~~~rl~~Yp~~~~~~~~~~~g~~~Ht 82 (209)
.+-.+|+||+.+++|+++|.+++..|+++|+++||+++++|. ..+. .+.+.+|++|||| |++++ ...|+++||
T Consensus 103 wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~~~~~~~~~lrl~~YPp-~~~~~-~~~g~~~Ht 178 (319)
T 1w9y_A 103 VPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLK--NAFYGSKGPNFGTKVSNYPP-CPKPD-LIKGLRAHT 178 (319)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHH--HHHHTTTCCEEEEEEEECCC-CSCGG-GGSSCCCBC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHhcCcCCccceeEEEecCC-Ccccc-ccccccccc
Confidence 444567999999999999999999999999999999999988 4443 3567899999999 55543 467999999
Q ss_pred CCCceeEEeec-CCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeeccccccc-CCCCCceEEEEccCC
Q 028407 83 DYGLITLLATD-EVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVL-GTGRERYSIAFFVEP 160 (209)
Q Consensus 83 D~~~lTll~~d-~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~-~~~~~R~Si~~F~~p 160 (209)
|+|+||||+|| .++||||+. + |+|++|+|.||++|||+||+||+||||+|||+.|||+ +++.+|||++||++|
T Consensus 179 D~g~lTlL~qd~~v~GLQV~~-~----g~Wi~V~p~pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p 253 (319)
T 1w9y_A 179 DAGGIILLFQDDKVSGLQLLK-D----GQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNP 253 (319)
T ss_dssp CSSSEEEEEESSSCCCEEEEE-T----TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEEC
T ss_pred CCCceEEEEecCCCCeeeEee-C----CeEEEcccCCCcEEEEhHHHHHHHhCCeeecccceecCCCCCCceEEEEEecC
Confidence 99999999995 799999975 3 4699999999999999999999999999999999999 557899999999999
Q ss_pred CCCCeEecCCCCCCCC---CCCCCCCccHHHHHHHHHHhhhccc
Q 028407 161 SHDCLVECLPTCKSDK---NPPKFPPIKCETYLSQRYKDTHADL 201 (209)
Q Consensus 161 ~~d~~i~p~~~~~~~~---~p~~y~~~t~~e~~~~~~~~~~~~~ 201 (209)
+.|++|+|++++++++ +|++|+++|++||+..+++..+..+
T Consensus 254 ~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~ 297 (319)
T 1w9y_A 254 GSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAK 297 (319)
T ss_dssp CTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSH
T ss_pred CCCCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCcc
Confidence 9999999999999887 5999999999999999988777443
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=7.3e-49 Score=337.81 Aligned_cols=178 Identities=18% Similarity=0.223 Sum_probs=157.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCCCCccccCCccceeeeccccCCCCCCC-CC--cccccccC
Q 028407 10 FHIFQVCLIYFVSAPREVAKAVARIIALALDL----DADFFDKPEMLGQAIATLRLLHYEGQISDPS-KG--MYGAGAHS 82 (209)
Q Consensus 10 ~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl----~~~~~~~~~~~~~~~~~~rl~~Yp~~~~~~~-~~--~~g~~~Ht 82 (209)
+|+||+.+++|+++|.+++..|+++|+++||+ ++++|. .. .+.+|++||||+ ++++ .+ ..|+++||
T Consensus 112 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~f~--~~----~~~lrl~~YPp~-~~~~~~~~~~~g~~~Ht 184 (311)
T 1dcs_A 112 SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFL--DC----EPLLRFRYFPQV-PEHRSAEEQPLRMAPHY 184 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHH--SC----CCEEEEEEECC------------CCEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcHhHHh--hc----chhhheecCCCC-CcccccCcccccccccc
Confidence 67999999999999999999999999999999 767776 22 788999999994 4332 13 67899999
Q ss_pred CCCceeEEeec-CCCc---eeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeeccccccc-CC-----CCCce
Q 028407 83 DYGLITLLATD-EVAG---LQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVL-GT-----GRERY 152 (209)
Q Consensus 83 D~~~lTll~~d-~~~G---LqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~-~~-----~~~R~ 152 (209)
|+|+||||+|| .++| |||++ + |+|++|+|.||++|||+||+||+||||+|||+.|||+ ++ +.+||
T Consensus 185 D~g~lTlL~qd~~v~G~~~LqV~~-~----g~W~~V~p~pg~lvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~ 259 (311)
T 1dcs_A 185 DLSMVTLIQQTPCANGFVSLQAEV-G----GAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRT 259 (311)
T ss_dssp ECSSEEEEEEECCTTCCCCEEEEE-T----TEEEECCCCTTCEEEEECHHHHHHTTSCSCCCCEEECCC----CTTCCEE
T ss_pred CCCeEEEEecCCCCCCceeEEEEe-C----CEEEeCcCCCCeEEEEHHHHHHHHhCCcccCCCceEeCCCcccCCCCCeE
Confidence 99999999999 8999 99998 4 4699999999999999999999999999999999999 44 67899
Q ss_pred EEEEccCCCCCCeEecCCCCCCCCCCCCC--CCccHHHHHHHHHHhhhcc
Q 028407 153 SIAFFVEPSHDCLVECLPTCKSDKNPPKF--PPIKCETYLSQRYKDTHAD 200 (209)
Q Consensus 153 Si~~F~~p~~d~~i~p~~~~~~~~~p~~y--~~~t~~e~~~~~~~~~~~~ 200 (209)
|++||++|+.|++|+ +++++++++|++| +++|++||+..++++.|..
T Consensus 260 Si~~F~~p~~d~~i~-l~~~~~~~~p~~y~~~~~t~~ey~~~~~~~~~~~ 308 (311)
T 1dcs_A 260 SSVFFLRPNADFTFS-VPLARECGFDVSLDGETATFQDWIGGNYVNIRRT 308 (311)
T ss_dssp EEEEEECCCTTCEEE-HHHHHHTTCCCCCCSSEEEHHHHHCSSCCCEECC
T ss_pred EEEEEEcCCCCcEEe-CCcccCCCCccccCCCCccHHHHHHHHHHHHhcc
Confidence 999999999999999 9999988899999 9999999999998887753
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=1.6e-46 Score=318.93 Aligned_cols=171 Identities=29% Similarity=0.444 Sum_probs=146.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCCCc-cccCCc-cceeeeccccCCCCCCCCCcccccccCCC
Q 028407 9 CFHIFQVCLIYFVSAPREVAKAVARIIALALDLD--ADFFDKP-EMLGQA-IATLRLLHYEGQISDPSKGMYGAGAHSDY 84 (209)
Q Consensus 9 ~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~--~~~~~~~-~~~~~~-~~~~rl~~Yp~~~~~~~~~~~g~~~HtD~ 84 (209)
.+|+||+.+++|+++|.+++..|+++||++||++ +++.... ..+++. .+.+|++||||++.......+|+++|||+
T Consensus 98 ~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~~~g~~~HtD~ 177 (280)
T 3on7_A 98 IPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSHKTLLRILHYPPMTGDEEMGAIRAAAHEDI 177 (280)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSCHHHHHTTCSSCEEEEEEECCCCTTCCCCSEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHHHHHHhcCCccceEEEEECCCCCCccccCcccccCCCCC
Confidence 3579999999999999999999999999999986 3332210 233444 48999999999543333357899999999
Q ss_pred CceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeecccccccCC-----CCCceEEEEccC
Q 028407 85 GLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGT-----GRERYSIAFFVE 159 (209)
Q Consensus 85 ~~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~~~-----~~~R~Si~~F~~ 159 (209)
|+||||+||+++||||++++| +|++|+|.||++|||+||+||+||||+|||+.|||+++ ..+|||++||++
T Consensus 178 g~lTlL~qd~~~GLqV~~~~g----~W~~V~p~pg~~vVNiGD~l~~~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~ 253 (280)
T 3on7_A 178 NLITVLPTANEPGLQVKAKDG----SWLDVPSDFGNIIINIGDMLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLH 253 (280)
T ss_dssp SSEEEEECCSCCCEEEECTTS----CEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEEECCTTCCTTSCEEECCEEEC
T ss_pred CeEEEEEecCCCCeEEEcCCC----CEEECcCCCCEEEEEcChHHHHHhCCcccCCCceEeCCCCCCCCCCeEEEEEEEc
Confidence 999999999999999997654 59999999999999999999999999999999999943 468999999999
Q ss_pred CCCCCeEecCCCCCCCCCCCCCCCccHHHHHHHHHHhh
Q 028407 160 PSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDT 197 (209)
Q Consensus 160 p~~d~~i~p~~~~~~~~~p~~y~~~t~~e~~~~~~~~~ 197 (209)
|+.|++|+| ++|++||++.|+++.
T Consensus 254 P~~d~~i~p--------------~ita~~~l~~rl~~~ 277 (280)
T 3on7_A 254 PHPSVVLSE--------------RYTADSYLMERLREL 277 (280)
T ss_dssp CCTTCBCSS--------------SCBHHHHHHHHHHHT
T ss_pred CCCCCEECC--------------CccHHHHHHHHHHHh
Confidence 999999974 589999999999865
No 7
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=93.90 E-value=1.1 Score=35.65 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=32.6
Q ss_pred CceEEccCCCCcEEEechhHHHHHhCCeeecccccccC--CCCCceEEEEccCCCC
Q 028407 109 QLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG--TGRERYSIAFFVEPSH 162 (209)
Q Consensus 109 g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~~--~~~~R~Si~~F~~p~~ 162 (209)
..+..|.|.+|.+||.-.. -.|.|.+ .+.+|+||+|.+.+..
T Consensus 166 ~~~~~i~P~~G~lvlFpS~------------l~H~V~p~~~~~~RiSIsFN~~~~~ 209 (216)
T 2rg4_A 166 RTFRSVAPKVGDVLLWESW------------LRHEVPMNMAEEDRISVSFNYAWGE 209 (216)
T ss_dssp CSEEEECCCTTEEEEEETT------------SCEEECCCCSSSCEEEEEEEEEC--
T ss_pred CCeeEecCCCCeEEEECCC------------CEEeccCCCCCCCEEEEEEEeecCC
Confidence 3577899999999977652 3799995 4679999999988764
No 8
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=91.22 E-value=0.43 Score=38.80 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=55.1
Q ss_pred eeeccccCCCCCCCCCcccccccCCCC-----ceeEEee-cC-------CCceeEEecCCCCCCceEEccCCCCcEEEec
Q 028407 59 LRLLHYEGQISDPSKGMYGAGAHSDYG-----LITLLAT-DE-------VAGLQICKDRDAKPQLWEDVAPMKGAFIVNL 125 (209)
Q Consensus 59 ~rl~~Yp~~~~~~~~~~~g~~~HtD~~-----~lTll~~-d~-------~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~ 125 (209)
+.+.+|++. + -....|.|.. .+|+++. +. .+-|+++..++ +....|.|..|.+|+.-
T Consensus 119 ~~~~~Y~~~------G-~~y~~H~D~~~~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~---~~~~~v~P~~grlv~F~ 188 (247)
T 2hbt_A 119 AMVACYPGN------G-TGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGK---AQFADIEPKFDRLLFFW 188 (247)
T ss_dssp EEEEEECSS------S-CCEEEECSSCSCCSEEEEEEEECBTTCCHHHHBCCEEECCTTC---SSCEEECCBTTEEEEEE
T ss_pred EEEEEecCC------C-CcccccccCCCCCCceEEEEEEeCCCCCCCCCceeEEEecCCC---CceEEEEcCCCEEEEEe
Confidence 567788751 1 1356677762 5777764 21 23367775432 24789999999999876
Q ss_pred hhHHHHHhCCeeecccccccCCCCCceEEEEccCC
Q 028407 126 GDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEP 160 (209)
Q Consensus 126 Gd~l~~~TnG~~~s~~HRV~~~~~~R~Si~~F~~p 160 (209)
.+. -.+|.|.+....|+||+.++.-
T Consensus 189 s~~----------~~~H~V~p~~~~R~sit~W~~~ 213 (247)
T 2hbt_A 189 SDR----------RNPHEVQPAYATRYAITVWYFD 213 (247)
T ss_dssp CST----------TCCEEECCBSSCEEEEEEEEEE
T ss_pred cCC----------CceeeeccCCCEEEEEEEEEcC
Confidence 421 1689999877899999887753
No 9
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=91.18 E-value=0.19 Score=41.00 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=51.0
Q ss_pred ceeeeccccCCCCCCCCCcccccccCCCC-----------ceeEEee--c----CCCceeEEecCCCCCCceEEccCCCC
Q 028407 57 ATLRLLHYEGQISDPSKGMYGAGAHSDYG-----------LITLLAT--D----EVAGLQICKDRDAKPQLWEDVAPMKG 119 (209)
Q Consensus 57 ~~~rl~~Yp~~~~~~~~~~~g~~~HtD~~-----------~lTll~~--d----~~~GLqV~~~~g~~~g~W~~v~~~~g 119 (209)
.-+++++|.+- --..+|.|.. .+|+++. | ..+.+.+.+..+ =..|+|..|
T Consensus 99 e~~~~~rY~~G--------~~y~~H~D~~~~~~~~~~~~r~~T~~lYLndp~~~~GGetvf~~~~~-----~~~V~P~~G 165 (243)
T 3dkq_A 99 YPPLFNRYQGG--------ETFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYG-----QQSIKLSAG 165 (243)
T ss_dssp EEEEEEEECTT--------CEEEEECBCSEEEETTEEEECCEEEEEECSCGGGEEECCEEEEETTE-----EEEECCCTT
T ss_pred ccceEEEECCC--------CeeccCCCCCCCCCCCccccceEEEEEEeCCCCCCCCceEEEeeCCC-----cEEEecCCC
Confidence 34788899871 1245677753 4565543 2 113355554332 367999999
Q ss_pred cEEEechhHHHHHhCCeeecccccccC-CCCCceEEEEccC
Q 028407 120 AFIVNLGDMLERWSNCIFKSTLHRVLG-TGRERYSIAFFVE 159 (209)
Q Consensus 120 ~lvVn~Gd~l~~~TnG~~~s~~HRV~~-~~~~R~Si~~F~~ 159 (209)
.+|+.-. ..+|+|.+ ....|++++.+++
T Consensus 166 ~~v~F~s------------~~lH~v~pV~~G~R~~~~~Wi~ 194 (243)
T 3dkq_A 166 SLVLYPS------------SSLHQVTPVLSGERTAAFMWLQ 194 (243)
T ss_dssp CEEEEET------------TSEEEECCEEEECEEEEEEEEE
T ss_pred EEEEECC------------CCeEcCccccccCEEEEEEehh
Confidence 9998642 36899985 4569999999886
No 10
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=90.32 E-value=1.9 Score=34.20 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=50.3
Q ss_pred eeeeccccCCCCCCCCCcccccccCCC-----C--ceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHH
Q 028407 58 TLRLLHYEGQISDPSKGMYGAGAHSDY-----G--LITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLE 130 (209)
Q Consensus 58 ~~rl~~Yp~~~~~~~~~~~g~~~HtD~-----~--~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~ 130 (209)
..-+|+|.+ +. ++++|.|. + ++++-+... .=+.+.... .++..+.+...+|+++|+-|++=
T Consensus 106 ~~LvN~Y~~-------G~-~i~~H~D~~e~~~~~pI~svSLG~~-~~f~f~~~~--~~~~~~~i~L~~GsllvM~G~~r- 173 (211)
T 3i3q_A 106 ACLINRYAP-------GA-KLSLHQDKDEPDLRAPIVSVSLGLP-AIFQFGGLK--RNDPLKRLLLEHGDVVVWGGESR- 173 (211)
T ss_dssp EEEEEEECT-------TC-CEEEECCCCCSCTTSCEEEEEEESC-EEEEECCSS--TTSCCEEEEECTTCEEEECGGGT-
T ss_pred EEEEEEEcC-------CC-CcccccCCCccccCCCEEEEECCCC-eEEEEeccc--CCCceEEEECCCCCEEEECchHH-
Confidence 467889987 22 78899993 2 223333221 223333221 12458899999999999999762
Q ss_pred HHhCCeeecccccccCC--------CCCceEEEEccC
Q 028407 131 RWSNCIFKSTLHRVLGT--------GRERYSIAFFVE 159 (209)
Q Consensus 131 ~~TnG~~~s~~HRV~~~--------~~~R~Si~~F~~ 159 (209)
.| .|.|... +..|+|+.|-..
T Consensus 174 ~~--------~H~I~~~~~~~~p~~~~~RIsLTFR~~ 202 (211)
T 3i3q_A 174 LF--------YHGIQPLKAGFHPLTIDCRYNLTFRQA 202 (211)
T ss_dssp TC--------CEEECCCCCCCBTTTBTCEEEEEEECC
T ss_pred ce--------EeccCcccCCcCCCCCCCEEEEEeeec
Confidence 12 4776522 246999999753
No 11
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=87.61 E-value=1.9 Score=34.78 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=54.3
Q ss_pred eeeeccccCCCCCCCCCcccccccCCCC--------ceeEEeecCCCceeEEecCCC------CCCceEEccCCCCcEEE
Q 028407 58 TLRLLHYEGQISDPSKGMYGAGAHSDYG--------LITLLATDEVAGLQICKDRDA------KPQLWEDVAPMKGAFIV 123 (209)
Q Consensus 58 ~~rl~~Yp~~~~~~~~~~~g~~~HtD~~--------~lTll~~d~~~GLqV~~~~g~------~~g~W~~v~~~~g~lvV 123 (209)
.+-+|+|.+- .-++++|.|-. +.+|-+... .=+.+...... ..+..+.+...+|+++|
T Consensus 127 ~~LvN~Y~~G-------~d~i~~H~D~~~~~~~~~~IaslSLG~~-~~f~f~~~~~~~~~~~~~~~~~~~i~L~~gsllv 198 (238)
T 2iuw_A 127 SLLCNLYRNE-------KDSVDWHSDDEPSLGRCPIIASLSFGAT-RTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLI 198 (238)
T ss_dssp EEEEEEECST-------TCCEEEECCCCGGGCSSCCEEEEEEESC-EEEEEEECCC--------CCCEEEEEECTTCEEE
T ss_pred EEEEEEECCC-------CCceeCCcCChhhcCCCCcEEEEECCCC-EEEEEeccCCccccCcccCCceEEEEcCCCCEEE
Confidence 4678888771 23688899952 223333221 22333332210 01368999999999999
Q ss_pred echhHHHHHhCCeeecccccccCCCCCceEEEEccCC
Q 028407 124 NLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEP 160 (209)
Q Consensus 124 n~Gd~l~~~TnG~~~s~~HRV~~~~~~R~Si~~F~~p 160 (209)
+-|++=..|..|.-+.. .....|+|+.|-...
T Consensus 199 M~G~~r~~w~H~I~~~~-----~~~~~RIsLTfR~v~ 230 (238)
T 2iuw_A 199 MEGATQADWQHRVPKEY-----HSREPRVNLTFRTVY 230 (238)
T ss_dssp EEETHHHHEEEEECCCS-----SCCCCEEEEEEECCC
T ss_pred EChhhhCccEecCCCcC-----CCCCCEEEEEeeecc
Confidence 99998766654432211 136799999997643
No 12
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=87.39 E-value=1.5 Score=34.44 Aligned_cols=85 Identities=9% Similarity=0.088 Sum_probs=52.2
Q ss_pred eeeeccccCCCCCCCCCcccccccCCCC--------ceeEEeecCCCceeEEecCC-----CCCCceEEccCCCCcEEEe
Q 028407 58 TLRLLHYEGQISDPSKGMYGAGAHSDYG--------LITLLATDEVAGLQICKDRD-----AKPQLWEDVAPMKGAFIVN 124 (209)
Q Consensus 58 ~~rl~~Yp~~~~~~~~~~~g~~~HtD~~--------~lTll~~d~~~GLqV~~~~g-----~~~g~W~~v~~~~g~lvVn 124 (209)
..-+|+|.+- .-++++|.|-. +++|-+... .=+.+....+ ...+..+.+...+|+++|+
T Consensus 101 ~~LvN~Y~~G-------~d~i~~H~D~~~~~~~~~~IasvSLG~~-~~f~~~~~~~~~~~~~~~~~~~~~~L~~GsllvM 172 (204)
T 3s57_A 101 FVLINRYKDG-------SDHICEHRDDERELAPGSPIASVSFGAS-RDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMM 172 (204)
T ss_dssp EEEEEEESST-------TCCEEEECCCCTTBCTTCCEEEEEEESC-EEEEEEEGGGCSSSCSCCCCCEEEEECTTEEEEE
T ss_pred eeEEEEECCC-------CCcccceecChhhccCCCcEEEEECCCc-eEEEEEEcCCCccccccCCceEEEECCCCCEEEE
Confidence 4568888872 22688899862 223323211 2244443211 0123578899999999999
Q ss_pred chhHHHHHhCCeeecccccccC---CCCCceEEEEcc
Q 028407 125 LGDMLERWSNCIFKSTLHRVLG---TGRERYSIAFFV 158 (209)
Q Consensus 125 ~Gd~l~~~TnG~~~s~~HRV~~---~~~~R~Si~~F~ 158 (209)
-|++=..|. |.|-. ....|+|+.|-.
T Consensus 173 ~g~~q~~w~--------H~Ip~~~~~~~~RislTFR~ 201 (204)
T 3s57_A 173 NHPTNTHWY--------HSLPVRKKVLAPRVNLTFRK 201 (204)
T ss_dssp ETTHHHHEE--------EEECCCTTCCSCEEEEEEEC
T ss_pred CchhhheeE--------eeccccCCCCCCEEEEEeee
Confidence 998777665 55542 247899999853
No 13
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=87.12 E-value=1 Score=38.47 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=59.6
Q ss_pred ceeeeccccCCCCCCCCCcccccccCCCC------ceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHH
Q 028407 57 ATLRLLHYEGQISDPSKGMYGAGAHSDYG------LITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLE 130 (209)
Q Consensus 57 ~~~rl~~Yp~~~~~~~~~~~g~~~HtD~~------~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~ 130 (209)
...-+|.|.+ +. ++++|.|.. ++++-+.. ..=+.+...+ +.++.+...+|+++|+-|++=.
T Consensus 198 n~~lvN~Y~~-------G~-~I~~H~D~~~~~~~~I~slSLG~-~~~f~f~~~~----~~~~~l~L~~gsLlvM~G~~r~ 264 (345)
T 3tht_A 198 DQMTINQYEP-------GQ-GIPAHIDTHSAFEDEIVSLSLGS-EIVMDFKHPD----GIAVPVMLPRRSLLVMTGESRY 264 (345)
T ss_dssp SEEEEEEECT-------TC-CEEEECCCTTTBCSCEEEEEESS-CEEEEEECTT----SCEEEEEECTTEEEEECTHHHH
T ss_pred CEEEEEEecC-------CC-CEeeccCCchhcCCeEEEEECCC-ceeEEEccCC----CceEEEEcCCCcEEEEChHHhh
Confidence 3567888977 11 788999974 22332211 1224444333 4589999999999999999999
Q ss_pred HHhCCeeeccccccc-------------------CCCCCceEEEEccCCCC
Q 028407 131 RWSNCIFKSTLHRVL-------------------GTGRERYSIAFFVEPSH 162 (209)
Q Consensus 131 ~~TnG~~~s~~HRV~-------------------~~~~~R~Si~~F~~p~~ 162 (209)
.|..|.-+-...-+- .....|+|+.|-.-++.
T Consensus 265 ~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~ 315 (345)
T 3tht_A 265 LWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQT 315 (345)
T ss_dssp TSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSS
T ss_pred ceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCC
Confidence 887664443222211 11346999999987664
No 14
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=80.90 E-value=4 Score=32.37 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCccccCCccceeeeccccCCCCCCCCCcccccccCCCC-----------ceeEEee-c
Q 028407 26 EVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYG-----------LITLLAT-D 93 (209)
Q Consensus 26 ~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~rl~~Yp~~~~~~~~~~~g~~~HtD~~-----------~lTll~~-d 93 (209)
.+...|.+.|+..+|++.+. ...+++.+|.+- + -..+|.|.. .+|+++. +
T Consensus 90 ~~v~~i~~Ri~~~~gl~~~~----------~E~lqv~~Y~~G------~--~y~~H~D~~~~~~~~~~~~R~~T~l~YLn 151 (216)
T 3itq_A 90 ELTAKIEKRISSIMNVPASH----------GEGLHILNYEVD------Q--QYKAHYDYFAEHSRSAANNRISTLVMYLN 151 (216)
T ss_dssp HHHHHHHHHHHHHHTSCGGG----------BCCCEEEEECBT------C--CEEEECSSCCTTSGGGGGCEEEEEEEECS
T ss_pred HHHHHHHHHHHHhcCceecc----------ccceeEEEeCCC------C--ccccccCCCcCCCcccCCceEEEEEEecc
Confidence 34555666666667776322 124778888761 1 135677753 3777755 2
Q ss_pred C--CCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCe-eecccccccCC-CCCceEEEEccCC
Q 028407 94 E--VAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCI-FKSTLHRVLGT-GRERYSIAFFVEP 160 (209)
Q Consensus 94 ~--~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~-~~s~~HRV~~~-~~~R~Si~~F~~p 160 (209)
+ .+|=-+... .=+.|.|..|.+++.-. ...+|. -..++|+|.+- ...|+++..+++-
T Consensus 152 d~~~GGeT~Fp~------~~~~V~P~~G~al~f~~----~~~~g~~d~~~lH~~~PV~~G~K~v~~~W~~~ 212 (216)
T 3itq_A 152 DVEEGGETFFPK------LNLSVHPRKGMAVYFEY----FYQDQSLNELTLHGGAPVTKGEKWIATQWVRR 212 (216)
T ss_dssp CCSEECCEEETT------TTEEECCCTTCEEEEEC----CCSSHHHHHTTCEEECCEEESCEEEEEEEEES
T ss_pred cCCcCceeEecC------CCCEEecCCCeEEEEec----cCCCCCCCCccccccceeccccEEEEEeeEec
Confidence 2 123222221 13678999999886542 001121 13579999854 5689999887753
No 15
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=75.17 E-value=5.3 Score=31.39 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=32.6
Q ss_pred eEEccCCCCcEEEechhHHHHHhCCee-ecccccccCC-CCCceEEEEccCCC
Q 028407 111 WEDVAPMKGAFIVNLGDMLERWSNCIF-KSTLHRVLGT-GRERYSIAFFVEPS 161 (209)
Q Consensus 111 W~~v~~~~g~lvVn~Gd~l~~~TnG~~-~s~~HRV~~~-~~~R~Si~~F~~p~ 161 (209)
-+.|.|..|.+|+.-- ...+|.. ..++|+|.+- ...|+++..+++-.
T Consensus 170 ~~~V~P~~G~al~f~~----~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~ 218 (224)
T 2jig_A 170 GLAVKPIKGDALMFYS----LKPDGSNDPASLHGSCPTLKGDKWSATKWIHVA 218 (224)
T ss_dssp SEEECCCTTCEEEEES----BCTTSCBCGGGCEEECCEEESEEEEEEEEEESS
T ss_pred ceEEecccCcEEEEEe----eCCCCCCCCCCcccCCccccceEEEEEEeEEcC
Confidence 3789999999887532 1123432 5789999854 56899999887643
No 16
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=35.08 E-value=31 Score=20.41 Aligned_cols=25 Identities=4% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCC
Q 028407 23 APREVAKAVARIIALALDLDADFFD 47 (209)
Q Consensus 23 ~~~~la~~ll~~la~~Lgl~~~~~~ 47 (209)
+-.+++..|.+++++.||.+++.+.
T Consensus 18 ~k~~l~~~l~~~l~~~lg~p~~~v~ 42 (63)
T 2x4k_A 18 QLKNLVSEVTDAVEKTTGANRQAIH 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEE
Confidence 4567899999999999999987544
No 17
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=31.78 E-value=42 Score=20.04 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCC
Q 028407 23 APREVAKAVARIIALALDLDADFFD 47 (209)
Q Consensus 23 ~~~~la~~ll~~la~~Lgl~~~~~~ 47 (209)
+-.+++..|.+++++.||.+++.+.
T Consensus 16 qk~~l~~~lt~~l~~~lg~~~~~v~ 40 (64)
T 3abf_A 16 KKRELVRRLTEMASRLLGEPYEEVR 40 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEE
Confidence 3467888999999999999987644
No 18
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=29.83 E-value=42 Score=19.87 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCC
Q 028407 23 APREVAKAVARIIALALDLDADFF 46 (209)
Q Consensus 23 ~~~~la~~ll~~la~~Lgl~~~~~ 46 (209)
+-.+++..|.+++.+.||.+++..
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERV 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCcccE
Confidence 456889999999999999997643
No 19
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=28.95 E-value=45 Score=19.69 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCC
Q 028407 23 APREVAKAVARIIALALDLDADFF 46 (209)
Q Consensus 23 ~~~~la~~ll~~la~~Lgl~~~~~ 46 (209)
+-.+++..|.+++.+.||.+++.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v 38 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKI 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeE
Confidence 446788999999999999997643
No 20
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=26.51 E-value=66 Score=19.37 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCC
Q 028407 23 APREVAKAVARIIALALDLDADFFD 47 (209)
Q Consensus 23 ~~~~la~~ll~~la~~Lgl~~~~~~ 47 (209)
+-.+++..|.+++++.||.+++.+.
T Consensus 14 qK~~L~~~it~~~~~~lg~~~~~v~ 38 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGMDRSAIT 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSCE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEE
Confidence 4467888999999999999987544
No 21
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=24.01 E-value=61 Score=19.61 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC
Q 028407 22 SAPREVAKAVARIIALALDLDADFF 46 (209)
Q Consensus 22 ~~~~~la~~ll~~la~~Lgl~~~~~ 46 (209)
++-.+++..|.+++.+.||.+++..
T Consensus 14 eqk~~L~~~it~~~~~~lg~p~~~v 38 (65)
T 3ry0_A 14 QEVAALGEALTAAAHETLGTPVEAV 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4557889999999999999997643
No 22
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=22.60 E-value=67 Score=19.59 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC
Q 028407 22 SAPREVAKAVARIIALALDLDADFF 46 (209)
Q Consensus 22 ~~~~~la~~ll~~la~~Lgl~~~~~ 46 (209)
++-.+++..|.+++++.||.+++..
T Consensus 17 eqK~~l~~~lt~~l~~~lg~p~~~v 41 (67)
T 3m21_A 17 EQKQQLIEGVSDLMVKVLNKNKASI 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHCcCcccE
Confidence 3456788899999999999997644
No 23
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=21.21 E-value=72 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCC
Q 028407 22 SAPREVAKAVARIIALALDLDADFFD 47 (209)
Q Consensus 22 ~~~~~la~~ll~~la~~Lgl~~~~~~ 47 (209)
++-.+++..|.+++.+.||.+++.+.
T Consensus 15 eqk~~L~~~l~~~l~~~lgip~~~v~ 40 (76)
T 1gyx_A 15 QQKAALAADITDVIIRHLNSKDSSIS 40 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCceEE
Confidence 34578899999999999999987543
No 24
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=21.09 E-value=20 Score=18.36 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=9.1
Q ss_pred cccccccCCCC
Q 028407 2 STIFLCLCFHI 12 (209)
Q Consensus 2 ~~~~~~l~~~~ 12 (209)
|.+|++|.+|.
T Consensus 11 SSvFITLapp~ 21 (26)
T 2k9u_B 11 SSVFITLAPPR 21 (26)
T ss_dssp EEEEEEECCSS
T ss_pred eeEEEEecCcc
Confidence 67899999884
No 25
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, STRU genomics consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A
Probab=20.05 E-value=19 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=17.9
Q ss_pred EEEechhHHH-----HHhCCeeecccccc
Q 028407 121 FIVNLGDMLE-----RWSNCIFKSTLHRV 144 (209)
Q Consensus 121 lvVn~Gd~l~-----~~TnG~~~s~~HRV 144 (209)
=+||+||+|+ .|.|+.=+|.+.|-
T Consensus 13 ~~~~igdqler~~lm~W~~~Lp~ArVt~W 41 (144)
T 2fzp_A 13 GLVPRGSTIEYNEILEWVNSLQPARVTRW 41 (144)
T ss_dssp CCSCTTSHHHHHHHHHHHHHSEEEEECCG
T ss_pred chhhHHHHHhHHHHHHHHhcCchhhcccc
Confidence 4789999987 68888777665553
Done!