BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028408
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide
Reductase
Length = 151
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 96/142 (67%), Gaps = 5/142 (3%)
Query: 72 LSSAEANRVDYAS---ISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCIC 128
+ S NRV+ +SD+EW+ L E + + R+ GTE FTG+Y + G Y CIC
Sbjct: 7 IFSVAKNRVEMVERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCIC 66
Query: 129 CDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFD 187
C T LF+S TKFDSGTGWPS+Y + N+K + D S+ M R EVLCA CDAHLGHVFD
Sbjct: 67 CGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRSL-GMVRCEVLCARCDAHLGHVFD 125
Query: 188 DGPPPTGKRYCINSASLKLKPK 209
DGP PTGKRYC+NSA+LK P+
Sbjct: 126 DGPRPTGKRYCMNSAALKFIPR 147
>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein
Length = 143
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 90/128 (70%), Gaps = 9/128 (7%)
Query: 89 EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPS 148
+W+++LT EQ+Y+TR+KGTE F+G Y N K G YHC+CCD+PLF S K+ SGTGWPS
Sbjct: 3 DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 149 YYQPIGS--------NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCIN 200
+ + GS + +LD S+ PR EV+C C+AHLGHVF DGP PTG+R+CIN
Sbjct: 63 FSEAYGSKGSDESHTGILRRLDTSLG-CPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCIN 121
Query: 201 SASLKLKP 208
S +LK KP
Sbjct: 122 SVALKFKP 129
>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CEZ|B Chain B, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CXK|A Chain A, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card.
pdb|3CXK|B Chain B, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card
Length = 164
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 86 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTG 145
D E +RRLT QY +T+ TE FTGEY +T+ G YHC+ C T LFES K+ SG G
Sbjct: 36 DDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCG 95
Query: 146 WPSYYQPI-GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSAS 203
WPSY++PI G + K+D + M R EV C C AHLGHVF+DGP TG RYCINSA+
Sbjct: 96 WPSYFKPIDGEVIDEKMDYT-HGMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAA 154
Query: 204 LKLKPK 209
L + K
Sbjct: 155 LNFEAK 160
>pdb|3E0O|A Chain A, Crystal Structure Of Msrb
pdb|3E0O|B Chain B, Crystal Structure Of Msrb
pdb|3E0O|C Chain C, Crystal Structure Of Msrb
pdb|3E0O|D Chain D, Crystal Structure Of Msrb
pdb|3E0O|E Chain E, Crystal Structure Of Msrb
pdb|3E0O|F Chain F, Crystal Structure Of Msrb
Length = 144
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 84 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
+ + EE + L QY +T+ GTE F EYW+ K G Y I PLF S KFDS
Sbjct: 3 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 62
Query: 144 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 203
GWPS+ +PI ++ KLD S M R EV D+HLGHVF+DGP P G RYCINSA+
Sbjct: 63 CGWPSFTKPIEEEVEEKLDTSHG-MIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 121
Query: 204 LKLKPK 209
L+ PK
Sbjct: 122 LRFVPK 127
>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide
Reductase Msrb From Bacillus Subtilis, Northeast
Structural Genomics Consortium Target Sr10
Length = 151
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 84 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSG 143
+ + EE + L QY +T+ GTE F EYW+ K G Y I PLF S KFDS
Sbjct: 2 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 61
Query: 144 TGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSAS 203
GWPS+ +PI ++ KLD S M R EV D+HLGHVF+DGP P G RYCINSA+
Sbjct: 62 CGWPSFTKPIEEEVEEKLDTSHG-MIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAA 120
Query: 204 LKLKPK 209
L+ PK
Sbjct: 121 LRFVPK 126
>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
pdb|3HCJ|B Chain B, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
Length = 154
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 70/113 (61%)
Query: 94 LTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI 153
L+ E+ + GTE F G + + K G Y C C PLF S+ KFDSGTGWPS++ P
Sbjct: 21 LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 154 GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 206
++ + M R E++CA CD+HLGHVF DGPPPTG+R+C+NS SL
Sbjct: 81 DPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAF 133
>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
pdb|3HCI|B Chain B, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
Length = 154
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 69/113 (61%)
Query: 94 LTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI 153
L+ E+ + GTE F G + + K G Y C C PLF S+ KFDSGTGWPS++ P
Sbjct: 21 LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 154 GSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKL 206
++ + M R E++CA CD+HLGHVF DGPPPTG+R+ +NS SL
Sbjct: 81 DPAHVREIRDTSYGMVRTEIVCARCDSHLGHVFPDGPPPTGERHSLNSVSLAF 133
>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Complex With Substrate)
pdb|3HCH|B Chain B, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Complex With Substrate)
Length = 146
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
Y SD E KR LT EQY +T+ TE AF+ EY + PG Y + PLF S+ K+D
Sbjct: 2 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61
Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 200
SG+GWPS+ +PI + ++ D M R EV D+HLGHVF DGP G RY IN
Sbjct: 62 SGSGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYSIN 121
Query: 201 SASLKLKP 208
ASLK P
Sbjct: 122 GASLKFIP 129
>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide
Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb
pdb|1L1D|B Chain B, Crystal Structure Of The C-Terminal Methionine Sulfoxide
Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb
Length = 152
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
Y SD E KR LT EQY +T+ TE AF+ EY + PG Y + PLF S+ K+D
Sbjct: 8 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 67
Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 200
SG GWPS+ +PI + ++ D R EV D+HLGHVF DGP G RYCIN
Sbjct: 68 SGCGWPSFTRPIDAKSVTEHDDFSFNXRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCIN 127
Query: 201 SASLKLKP 208
ASLK P
Sbjct: 128 GASLKFIP 135
>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|B Chain B, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|C Chain C, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|D Chain D, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 146
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Query: 82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFD 141
Y SD E KR LT EQY +T+ TE AF+ EY + PG Y + PLF S+ K+D
Sbjct: 2 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYD 61
Query: 142 SGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYCIN 200
SG GWPS+ +PI + ++ D R EV D+HLGHVF DGP G RYCIN
Sbjct: 62 SGCGWPSFTRPIDAKSVTEHDDFSYNXRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCIN 121
Query: 201 SASLKLKP 208
ASLK P
Sbjct: 122 GASLKFIP 129
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 81 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKF 140
+Y S E K L+ E Y +T++ TE FT Y T G Y I PLF + KF
Sbjct: 167 NYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKF 226
Query: 141 DSGTGWPSYYQPIGSNMKSKL-DLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGK-RYC 198
SG GWPS+ +P+ + DLS M R EV AHLGHVF DGP G RYC
Sbjct: 227 ASGCGWPSFSRPLSKELIHYYKDLS-HGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYC 285
Query: 199 INSASLKLKPK 209
INSASL+ K
Sbjct: 286 INSASLRFVAK 296
>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide
Reductase B1 (Msrb1)
Length = 105
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 115 YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVL 174
+ N PG Y C C LF S +K+ + WP++ + I ++ +K R E L
Sbjct: 5 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE----HNRSEAL 60
Query: 175 ---CAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 209
C C LGH F +DGP P R+ I S+SLK PK
Sbjct: 61 KVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLKFVPK 99
>pdb|2KV1|A Chain A, Insights Into Function, Catalytic Mechanism And Fold
Evolution Of Mouse Selenoprotein Methionine Sulfoxide
Reductase B1 Through Structural Analysis
Length = 124
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 111 FTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMP 169
F GE + N PG Y C C LF S +K+ + WP++ + I + +K
Sbjct: 7 FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN---- 62
Query: 170 RQEVL---CAVCDAHLGHVF-DDGPPPTGKRYCINSASLKLKPK 209
R E L C C LGH F +DGP R+CI S+SLK PK
Sbjct: 63 RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFCIFSSSLKFVPK 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,140,192
Number of Sequences: 62578
Number of extensions: 242527
Number of successful extensions: 406
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 15
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)