Query 028408
Match_columns 209
No_of_seqs 194 out of 1282
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0o_A Peptide methionine sulf 100.0 4.3E-71 1.5E-75 451.8 11.1 125 84-209 3-127 (144)
2 3cxk_A Methionine-R-sulfoxide 100.0 1.2E-69 4.1E-74 451.0 12.5 130 79-209 29-160 (164)
3 2k8d_A Peptide methionine sulf 100.0 2E-70 6.9E-75 450.7 7.0 127 82-209 20-147 (151)
4 3hcg_A Peptide methionine sulf 100.0 3.6E-70 1.2E-74 447.2 8.2 127 82-209 2-130 (146)
5 3hcj_A MSRB, peptide methionin 100.0 7.1E-69 2.4E-73 442.6 10.8 122 87-209 14-136 (154)
6 2l1u_A MSRB2, methionine-R-sul 100.0 1.5E-69 5E-74 442.3 5.8 122 87-209 1-130 (143)
7 3e0m_A Peptide methionine sulf 100.0 4E-64 1.4E-68 452.0 11.6 128 81-209 167-296 (313)
8 2kv1_A Methionine-R-sulfoxide 100.0 2.2E-54 7.7E-59 345.8 9.5 99 109-209 5-106 (124)
9 3mao_A Methionine-R-sulfoxide 100.0 9.8E-54 3.3E-58 333.9 8.5 94 114-209 4-99 (105)
10 2kao_A Methionine-R-sulfoxide 100.0 2.1E-53 7E-58 340.2 10.5 97 111-209 7-106 (124)
11 1pft_A TFIIB, PFTFIIBN; N-term 76.1 2.4 8.3E-05 27.4 3.2 32 118-151 19-50 (50)
12 1dl6_A Transcription factor II 74.4 2.3 7.8E-05 29.0 2.8 33 117-151 24-56 (58)
13 3gox_A Restriction endonucleas 69.2 4 0.00014 34.8 3.8 70 90-188 115-184 (200)
14 3k7a_M Transcription initiatio 40.3 15 0.0005 32.3 2.5 55 86-151 10-68 (345)
15 3tf7_C 42F3 MUT7 SCFV (42F3 al 36.9 11 0.00039 29.6 1.1 22 118-139 219-243 (256)
16 1twf_I B12.6, DNA-directed RNA 34.7 19 0.00066 27.5 2.1 20 167-186 67-86 (122)
17 2znx_A SCFV; fluorotryptohpan, 34.3 15 0.00052 28.6 1.5 21 118-138 209-229 (242)
18 3qt1_I DNA-directed RNA polyme 33.3 38 0.0013 26.5 3.6 20 167-186 87-106 (133)
19 3fac_A Putative uncharacterize 32.7 17 0.00058 26.8 1.5 30 172-205 67-96 (118)
20 3h0g_I DNA-directed RNA polyme 32.2 15 0.00051 27.7 1.1 20 167-186 67-86 (113)
21 1x0t_A Ribonuclease P protein 27.1 61 0.0021 24.7 3.8 68 89-184 39-106 (120)
22 2k3r_A Ribonuclease P protein 26.4 62 0.0021 24.8 3.8 68 89-184 34-101 (123)
23 1qyp_A RNA polymerase II; tran 26.4 31 0.001 22.7 1.7 17 167-183 10-26 (57)
24 4rxn_A Rubredoxin; electron tr 26.3 36 0.0012 23.0 2.1 19 123-148 3-21 (54)
25 2apo_B Ribosome biogenesis pro 25.3 27 0.00091 24.3 1.3 12 126-137 21-32 (60)
26 3uzq_A Anti-dengue MAB 4E11; d 24.7 28 0.00097 27.0 1.5 20 118-137 216-237 (253)
27 3omz_A Human vdelta1 gamma del 24.5 24 0.00082 27.6 1.1 11 118-128 218-228 (259)
28 1vq8_1 50S ribosomal protein L 24.2 32 0.0011 23.9 1.5 28 121-148 15-43 (57)
29 3j21_e 50S ribosomal protein L 23.9 32 0.0011 24.3 1.5 26 123-148 17-43 (62)
30 2atp_B T-cell surface glycopro 23.6 29 0.00098 24.1 1.2 12 118-129 88-99 (115)
31 2kn9_A Rubredoxin; metalloprot 23.6 99 0.0034 22.5 4.2 20 121-147 25-44 (81)
32 1tvd_A T cell receptor, ES204 23.0 30 0.001 24.0 1.3 12 118-129 85-96 (116)
33 2k2d_A Ring finger and CHY zin 22.7 43 0.0015 24.0 2.1 32 150-181 15-46 (79)
34 4a18_A RPL37, ribosomal protei 22.4 31 0.0011 26.2 1.3 28 122-149 15-42 (94)
35 2zkr_2 60S ribosomal protein L 21.3 44 0.0015 25.5 1.9 33 121-153 14-46 (97)
36 1sjv_A R9; camelids antibody, 21.3 47 0.0016 23.0 2.0 13 118-130 87-99 (114)
37 1pew_A JTO2, A lambda-6 type i 20.9 34 0.0012 23.6 1.1 11 118-128 81-91 (109)
38 3iz5_l 60S ribosomal protein L 20.7 31 0.0011 26.2 0.9 27 122-148 15-41 (94)
39 1qfw_M FV, antibody (anti beta 20.4 45 0.0015 22.8 1.7 14 117-130 79-92 (108)
No 1
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=4.3e-71 Score=451.76 Aligned_cols=125 Identities=49% Similarity=0.840 Sum_probs=121.6
Q ss_pred CCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecC
Q 028408 84 SISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDL 163 (209)
Q Consensus 84 ~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~ 163 (209)
.++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|+++.|.
T Consensus 3 ~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D~ 82 (144)
T 3e0o_A 3 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDT 82 (144)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEEC
T ss_pred CCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408 164 SIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 164 s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~ 209 (209)
++ ||+||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 83 s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~ 127 (144)
T 3e0o_A 83 SH-GMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPK 127 (144)
T ss_dssp CT-TSCEEEEEETTTCCEEEEEESCCSSTTCCEEEECGGGEEEEEH
T ss_pred CC-CceEEEEEcCCCCCccCCccCCCCCCCCCEeeeceeeEeeeec
Confidence 96 9999999999999999999999999999999999999999984
No 2
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=1.2e-69 Score=450.98 Aligned_cols=130 Identities=51% Similarity=0.908 Sum_probs=123.3
Q ss_pred CCCCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCC-Cc
Q 028408 79 RVDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NM 157 (209)
Q Consensus 79 ~~~~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~-~v 157 (209)
+...+.++++|||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||++ +|
T Consensus 29 ~~~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V 108 (164)
T 3cxk_A 29 PRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVI 108 (164)
T ss_dssp --CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSE
T ss_pred cccccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCce
Confidence 33456799999999999999999999999999999999999999999999999999999999999999999999975 78
Q ss_pred EEeecCCCCCCcEEEEEcCCCCCCccccCCCCC-CCCCceeeecceeeeeeeC
Q 028408 158 KSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 158 ~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~Ptg~RYCINS~sL~F~P~ 209 (209)
.++.|.++ ||+||||+|++||+||||||+||| +|||+|||||||||+|+|+
T Consensus 109 ~~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~ptg~RyCINS~sL~F~p~ 160 (164)
T 3cxk_A 109 DEKMDYTH-GMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAALNFEAK 160 (164)
T ss_dssp EEEEECGG-GCCEEEEEETTTCCEEEEEESCSCTTTTSCEEEECGGGEEEEEC
T ss_pred EEeECCCC-CcEEEEEEeCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence 89999986 999999999999999999999999 9999999999999999985
No 3
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2e-70 Score=450.71 Aligned_cols=127 Identities=57% Similarity=1.087 Sum_probs=122.8
Q ss_pred CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEe
Q 028408 82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSK 160 (209)
Q Consensus 82 ~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~ 160 (209)
.+.++++|||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.++
T Consensus 20 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~~ 99 (151)
T 2k8d_A 20 RIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLR 99 (151)
T ss_dssp CSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEECC
T ss_pred ccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999997 489999
Q ss_pred ecCCCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408 161 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 161 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~ 209 (209)
.|.++ ||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 100 ~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~ 147 (151)
T 2k8d_A 100 EDRSL-GMVRCEVLCARCDAHLGHVFDDGPRPTGKRYCMNSAALKFIPR 147 (151)
T ss_dssp CCBTT-SSCEEEEEETTEEEEEEEEEECSSSSSCEEEEECSTTEEEECS
T ss_pred eCCCC-CceEEEEEeCCCCCcCCcccCCCCCCCCCEEeeceeeecccch
Confidence 99996 9999999999999999999999999999999999999999985
No 4
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=3.6e-70 Score=447.24 Aligned_cols=127 Identities=49% Similarity=0.790 Sum_probs=121.7
Q ss_pred CCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEe
Q 028408 82 YASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSK 160 (209)
Q Consensus 82 ~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~ 160 (209)
+..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.++
T Consensus 2 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~ 81 (146)
T 3hcg_A 2 YKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEH 81 (146)
T ss_dssp CCCCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEE
T ss_pred CCCCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEe
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999996 678899
Q ss_pred ecCCCCCCcEEEEEcCCCCCCccccCCCCCC-CCCceeeecceeeeeeeC
Q 028408 161 LDLSIIFMPRQEVLCAVCDAHLGHVFDDGPP-PTGKRYCINSASLKLKPK 209 (209)
Q Consensus 161 ~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~-Ptg~RYCINS~sL~F~P~ 209 (209)
.|.++ ||+||||+|++||+||||||+|||+ |||+|||||||||+|+|+
T Consensus 82 ~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~~~tg~RyCiNS~sL~F~p~ 130 (146)
T 3hcg_A 82 DDFSY-NMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPL 130 (146)
T ss_dssp EEEET-TEEEEEEEETTTCCEEEEEESCSCGGGTSCEEEECGGGEEEEEH
T ss_pred ecCCC-CcEEEEEEeCCCCCccCceeCCCCCCCCCCEEeeeeEEEEeeeh
Confidence 99996 9999999999999999999999997 599999999999999984
No 5
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=7.1e-69 Score=442.61 Aligned_cols=122 Identities=45% Similarity=0.877 Sum_probs=118.5
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEeecCCC
Q 028408 87 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSI 165 (209)
Q Consensus 87 ~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~~D~s~ 165 (209)
.+|||++|||+||+|||++|||+||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.++.|.++
T Consensus 14 ~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~ 93 (154)
T 3hcj_A 14 RDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTSY 93 (154)
T ss_dssp HHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTTT
T ss_pred HHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999997 67999999996
Q ss_pred CCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408 166 IFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 166 ~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~ 209 (209)
||.||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 94 -gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~ 136 (154)
T 3hcj_A 94 -GMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAFTED 136 (154)
T ss_dssp -TTSCEEEEETTTCCEEEEEESCSCTTTTCEEEECGGGEEEEET
T ss_pred -CceEEEEEeCCCCCccCCccCCCCCCCCCEeeeceeeEEeeeC
Confidence 9999999999999999999999999999999999999999985
No 6
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-69 Score=442.33 Aligned_cols=122 Identities=55% Similarity=1.130 Sum_probs=118.5
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccC--------CCCcE
Q 028408 87 DEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI--------GSNMK 158 (209)
Q Consensus 87 ~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi--------~~~v~ 158 (209)
++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|+
T Consensus 1 ~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~ 80 (143)
T 2l1u_A 1 MADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGIL 80 (143)
T ss_dssp CCCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEE
T ss_pred ChHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999999999 67899
Q ss_pred EeecCCCCCCcEEEEEcCCCCCCccccCCCCCCCCCceeeecceeeeeeeC
Q 028408 159 SKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 159 ~~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~F~P~ 209 (209)
.+.|.++ ||+||||+|++||+||||||+|||+|||+|||||||||+|+|+
T Consensus 81 ~~~D~s~-gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~ 130 (143)
T 2l1u_A 81 RRLDTSL-GCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 130 (143)
T ss_dssp EEEECTT-SSCEEEEEESSSCCCCEEEECCSSCGGGCEEEECCTTEEEEES
T ss_pred EeecccC-CceEEEEEECCCCCcCCcccCCCCCCCCCEEEeeeeEEeccch
Confidence 9999996 9999999999999999999999999999999999999999985
No 7
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=4e-64 Score=452.01 Aligned_cols=128 Identities=45% Similarity=0.669 Sum_probs=123.2
Q ss_pred CCCCCCHHHHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEE
Q 028408 81 DYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKS 159 (209)
Q Consensus 81 ~~~~~s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~ 159 (209)
.+..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus 167 ~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~ 246 (313)
T 3e0m_A 167 NYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHY 246 (313)
T ss_dssp GGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEE
T ss_pred ccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999996 68999
Q ss_pred eecCCCCCCcEEEEEcCCCCCCccccCCCCC-CCCCceeeecceeeeeeeC
Q 028408 160 KLDLSIIFMPRQEVLCAVCDAHLGHVFDDGP-PPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 160 ~~D~s~~gm~RtEV~C~~Cg~HLGHVF~DGP-~Ptg~RYCINS~sL~F~P~ 209 (209)
+.|.++ ||.||||+|++||+||||||+||| +|||+||||||+||+|+|+
T Consensus 247 ~~D~s~-gm~RtEv~c~~c~~HLGHVF~DGp~~ptg~RyCiNs~sL~F~p~ 296 (313)
T 3e0m_A 247 YKDLSH-GMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAK 296 (313)
T ss_dssp EEECCT-TCCEEEEEESSSCCEEEEEESCSCTTTTSCEEEECGGGEEEEEH
T ss_pred eecCCC-CcEEEEEECCCCCCccCcccCCCCCCCCCCEEeeceeeEeeecc
Confidence 999996 999999999999999999999999 7999999999999999984
No 8
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-54 Score=345.79 Aligned_cols=99 Identities=35% Similarity=0.694 Sum_probs=91.2
Q ss_pred CCccCC-CCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCC-CcEEeecCCCCCCcEEEEEcCCCCCCccccC
Q 028408 109 RAFTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGS-NMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF 186 (209)
Q Consensus 109 ~pFsg~-y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~-~v~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF 186 (209)
.+|+|+ |||++++|+|+|++||+|||+|++|||||||||||++||++ +|....|.+ +|.||||+|++||+||||||
T Consensus 5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~--~~~r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN--RPEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSS--STTCEEEECTTTTCCCEEEC
T ss_pred cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccC--CceEEEEEEecCCCccCCcc
Confidence 379999 78889999999999999999999999999999999999974 566566654 68899999999999999999
Q ss_pred -CCCCCCCCceeeecceeeeeeeC
Q 028408 187 -DDGPPPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 187 -~DGP~Ptg~RYCINS~sL~F~P~ 209 (209)
+|||+|||+|||||||||+|+|+
T Consensus 83 ~~DGP~ptg~RyCINS~sL~F~p~ 106 (124)
T 2kv1_A 83 LNDGPKRGQSRFCIFSSSLKFVPK 106 (124)
T ss_dssp TTSCTTTTCSCEECCTTTEEEEEC
T ss_pred CCCCCCCCCCEEeecceeeEeEEC
Confidence 89999999999999999999995
No 9
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=100.00 E-value=9.8e-54 Score=333.89 Aligned_cols=94 Identities=34% Similarity=0.687 Sum_probs=89.3
Q ss_pred CCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEeecCCCCCCcEEEEEcCCCCCCccccC-CCCCC
Q 028408 114 EYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF-DDGPP 191 (209)
Q Consensus 114 ~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF-~DGP~ 191 (209)
+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+ +|.||||+|++||+|||||| +|||+
T Consensus 4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~--~~~RtEV~C~~C~~HLGHVF~~DGP~ 81 (105)
T 3mao_A 4 VFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN--RSEALKVSCGKCGNGLGHEFLNDGPK 81 (105)
T ss_dssp CCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTT--STTEEEEEETTTCCEEEEEETTCSSS
T ss_pred cccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCC--CCCEEEEEeCCCCCccCcccCCCCcC
Confidence 69999999999999999999999999999999999999997 6788888865 58999999999999999999 79999
Q ss_pred CCCceeeecceeeeeeeC
Q 028408 192 PTGKRYCINSASLKLKPK 209 (209)
Q Consensus 192 Ptg~RYCINS~sL~F~P~ 209 (209)
|||+|||||||||+|+|+
T Consensus 82 ptg~RyCiNS~sL~F~p~ 99 (105)
T 3mao_A 82 PGQSRFSIFSSSLKFVPK 99 (105)
T ss_dssp TTCCEEEECGGGEEEEET
T ss_pred CCCCEEeeCeeeEEeeec
Confidence 999999999999999995
No 10
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=100.00 E-value=2.1e-53 Score=340.23 Aligned_cols=97 Identities=36% Similarity=0.717 Sum_probs=91.4
Q ss_pred ccCC-CCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCC-CCcEEeecCCCCCCcEEEEEcCCCCCCccccC-C
Q 028408 111 FTGE-YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVF-D 187 (209)
Q Consensus 111 Fsg~-y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-~~v~~~~D~s~~gm~RtEV~C~~Cg~HLGHVF-~ 187 (209)
|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|++..|.+ +|.||||+|++||+|||||| +
T Consensus 7 ~~ge~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~pi~~~~v~~~~D~~--~~~RtEV~C~~Cg~HLGHVF~~ 84 (124)
T 2kao_A 7 FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN--RPEALKVSCGKCGNGLGHEFLN 84 (124)
T ss_dssp CCSCTTTTCCCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCCCCCSSCEEEECSS--CTTCEEEECTTTTCCCEEECCS
T ss_pred cccccccCCCCCEEEEeCCCCCccccCcccccCCCCChhhCccCCccceEEEecCC--CCCEEEEEeCCCCCcCCccCCC
Confidence 5788 8899999999999999999999999999999999999997 6788888865 58999999999999999999 7
Q ss_pred CCCCCCCceeeecceeeeeeeC
Q 028408 188 DGPPPTGKRYCINSASLKLKPK 209 (209)
Q Consensus 188 DGP~Ptg~RYCINS~sL~F~P~ 209 (209)
|||+|||+|||||||||+|+|+
T Consensus 85 DGP~ptg~RyCINS~sL~F~p~ 106 (124)
T 2kao_A 85 DGPKRGQSRFCIFSSSLKFVPK 106 (124)
T ss_dssp SCSSSSCCCEECCSSSEEEECC
T ss_pred CCcCCCCCEeeeCeEEEEeecc
Confidence 9999999999999999999995
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=76.13 E-value=2.4 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.483 Sum_probs=25.4
Q ss_pred CCCceEEEcccCCccccCCCCcccCCCCCccccc
Q 028408 118 TKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQ 151 (209)
Q Consensus 118 ~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 151 (209)
..+.|.++|..||.-+ .+.-.|.|.-|.+|..
T Consensus 19 d~~~gelvC~~CG~v~--~e~~id~~~ewr~f~~ 50 (50)
T 1pft_A 19 DPERGEIVCAKCGYVI--EENIIDMGPEWRAFDA 50 (50)
T ss_dssp ETTTTEEEESSSCCBC--CCCCCCCCSSSSCCCC
T ss_pred cCCCCeEECcccCCcc--cccccccCCcccccCC
Confidence 3467999999999887 3455788999999963
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=74.36 E-value=2.3 Score=28.99 Aligned_cols=33 Identities=18% Similarity=0.496 Sum_probs=27.4
Q ss_pred CCCCceEEEcccCCccccCCCCcccCCCCCccccc
Q 028408 117 NTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQ 151 (209)
Q Consensus 117 ~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 151 (209)
...+.|.++|..||.-| .+.-.|.|.-|.+|..
T Consensus 24 ~D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 24 EDYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN 56 (58)
T ss_dssp ECSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred EeCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence 34578999999999887 5567899999999974
No 13
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=69.21 E-value=4 Score=34.78 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=48.0
Q ss_pred HHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecCCCCCCc
Q 028408 90 WKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMP 169 (209)
Q Consensus 90 wr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~s~~gm~ 169 (209)
.+-.||++||+-+.+.-.+ | .-++.|+.|+.++-.... .......|-.. |.+
T Consensus 115 r~YGIT~eey~~L~e~Qg~------~-----~~~G~C~ICg~~~~~~~~----------------k~lvVDHDH~T-G~V 166 (200)
T 3gox_A 115 DGVKLSSTEKKKMDEIAPP------K-----GSVFTCPICEKRSIVGVT----------------ANLVHDHNHDT-GWG 166 (200)
T ss_dssp HCSCCCHHHHHHHHTTCCC------T-----TCEEECTTTCCEEEBTTT----------------BCEEEEECTTT-CCE
T ss_pred CCcCCCHHHHHHHHHHccc------C-----CCCCcCcCCCCCCCcCcc----------------cceeeecccCC-CcE
Confidence 4458999999877764322 2 238999999999874221 12333344443 777
Q ss_pred EEEEEcCCCCCCccccCCC
Q 028408 170 RQEVLCAVCDAHLGHVFDD 188 (209)
Q Consensus 170 RtEV~C~~Cg~HLGHVF~D 188 (209)
| .+.|..|+.=||++=+|
T Consensus 167 R-GlLC~~CN~~LG~~~Dn 184 (200)
T 3gox_A 167 R-EWICDSCNTGLGRFKDN 184 (200)
T ss_dssp E-EEEEHHHHHHHHHTTTC
T ss_pred e-cccchhhcchhccccCC
Confidence 7 89999999999998544
No 14
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=40.30 E-value=15 Score=32.33 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=33.5
Q ss_pred CHHHHHhcCCHHHHHHHhhcCCCCCccCC----CCCCCCceEEEcccCCccccCCCCcccCCCCCccccc
Q 028408 86 SDEEWKRRLTGEQYYITRQKGTERAFTGE----YWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQ 151 (209)
Q Consensus 86 s~~ewr~~Ltp~qy~Vlr~~GTE~pFsg~----y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 151 (209)
..++|+..|.. -.--|..|. .-...+.|.++|..||.-| .+.-.|.|.-|-+|..
T Consensus 10 ~~~~~~~~~~~---------~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl--~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 10 RAGRRGPNLNI---------VLTCPECKVYPPKIVERFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSN 68 (345)
T ss_dssp -------CCCC---------CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC--CCCCCCTTCCCCCC--
T ss_pred cccccCccccC---------CCcCcCCCCCCCceEEECCCCCEecCCCCeEc--ccccccCCcccccccc
Confidence 34447766653 123566554 3344678999999999988 5667888999999974
No 15
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=36.91 E-value=11 Score=29.62 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=16.8
Q ss_pred CCCceEEEccc---CCccccCCCCc
Q 028408 118 TKTPGTYHCIC---CDTPLFESSTK 139 (209)
Q Consensus 118 ~~~~GiY~C~~---Cg~pLF~S~~K 139 (209)
..+.|+|.|++ ||..+|...+|
T Consensus 219 ~~DsG~Y~C~a~n~~g~~~fG~gt~ 243 (256)
T 3tf7_C 219 PSQTSLYFCASSDAPGQLYFGEGSK 243 (256)
T ss_dssp GGGCEEEEEEEEEETTEEEECCCEE
T ss_pred HHHCEEEEEEecCCCCccEECCCeE
Confidence 46789999987 67777776655
No 16
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=34.68 E-value=19 Score=27.46 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=15.1
Q ss_pred CCcEEEEEcCCCCCCccccC
Q 028408 167 FMPRQEVLCAVCDAHLGHVF 186 (209)
Q Consensus 167 gm~RtEV~C~~Cg~HLGHVF 186 (209)
.+.||++.|.+||.+--..|
T Consensus 67 t~p~t~~~Cp~C~~~~a~~~ 86 (122)
T 1twf_I 67 TLPRSDRECPKCHSRENVFF 86 (122)
T ss_dssp TSCCCCCCCTTTCCCCEEEE
T ss_pred cccccCCCCCCCCCCEEEEE
Confidence 56789999999997644444
No 17
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=34.33 E-value=15 Score=28.58 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=14.9
Q ss_pred CCCceEEEcccCCccccCCCC
Q 028408 118 TKTPGTYHCICCDTPLFESST 138 (209)
Q Consensus 118 ~~~~GiY~C~~Cg~pLF~S~~ 138 (209)
..+.|.|.|.+.+..+|...+
T Consensus 209 ~~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 209 TEDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp GGGCEEEEEEETTSSCBCCCE
T ss_pred cCcCEEEEEeccCCcccCCCe
Confidence 357899999998755554443
No 18
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=33.26 E-value=38 Score=26.54 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCCCccccC
Q 028408 167 FMPRQEVLCAVCDAHLGHVF 186 (209)
Q Consensus 167 gm~RtEV~C~~Cg~HLGHVF 186 (209)
.++|+++.|.+||..--..|
T Consensus 87 tlp~t~~~CpkCg~~~a~f~ 106 (133)
T 3qt1_I 87 TLPRSDRECPKCHSRENVFF 106 (133)
T ss_dssp --------------------
T ss_pred cCCcccCCCCCCCCceEEEE
Confidence 36799999999996654444
No 19
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=32.70 E-value=17 Score=26.84 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=21.3
Q ss_pred EEEcCCCCCCccccCCCCCCCCCceeeecceeee
Q 028408 172 EVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 205 (209)
Q Consensus 172 EV~C~~Cg~HLGHVF~DGP~Ptg~RYCINS~sL~ 205 (209)
-..|+.||+||-+...++| ..+=||...|+
T Consensus 67 r~FC~~CGs~l~~~~~~~~----~~~~V~~g~ld 96 (118)
T 3fac_A 67 HWFCRTCGIYTHHQRRSNP----EEYGVNVAILE 96 (118)
T ss_dssp EEEETTTCCEEEEECSSCT----TEEEEEGGGBT
T ss_pred eEECCCCCccccCccCCCC----CEEEEEecccC
Confidence 4789999999977665544 34567776664
No 20
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.22 E-value=15 Score=27.75 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=14.9
Q ss_pred CCcEEEEEcCCCCCCccccC
Q 028408 167 FMPRQEVLCAVCDAHLGHVF 186 (209)
Q Consensus 167 gm~RtEV~C~~Cg~HLGHVF 186 (209)
..+|+++.|.+||.+--..|
T Consensus 67 tlp~~~~~Cp~C~~~~a~~~ 86 (113)
T 3h0g_I 67 TLPRSDKECPRCHQHEAVFY 86 (113)
T ss_dssp SSCBCCSCCSSSCCSCEEEE
T ss_pred cCCCcccCCCCCCCceEEEE
Confidence 46899999999996544334
No 21
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=27.14 E-value=61 Score=24.70 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecCCCCCC
Q 028408 89 EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFM 168 (209)
Q Consensus 89 ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~s~~gm 168 (209)
++-..+......|.+..-..-|-. + ++. .|..|+.+|-... +........ +.
T Consensus 39 ~lSr~Y~~~~~~is~k~~irlp~~---~--KR~---~Ck~C~s~LiPG~------------------t~~vri~~~--~~ 90 (120)
T 1x0t_A 39 DLAKRYVELALEIQKKAKVKIPRK---W--KRR---YCKRCHTFLIPGV------------------NARVRLRTK--RM 90 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCTT---T--TTS---BCTTTCCBCCBTT------------------TEEEEEECS--SS
T ss_pred HHHHHHHHHHHHHHHHhccCCCHH---H--HHH---hccCCCCEeECCC------------------ceEEEEecC--Cc
Confidence 444455555666777766654432 1 111 8999999884321 111111111 23
Q ss_pred cEEEEEcCCCCCCccc
Q 028408 169 PRQEVLCAVCDAHLGH 184 (209)
Q Consensus 169 ~RtEV~C~~Cg~HLGH 184 (209)
..+.+.|..||..-=.
T Consensus 91 ~~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 91 PHVVITCLECGYIMRY 106 (120)
T ss_dssp CEEEEEETTTCCEEEE
T ss_pred cEEEEECCCCCCEEEE
Confidence 4789999999965433
No 22
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=26.41 E-value=62 Score=24.81 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=38.1
Q ss_pred HHHhcCCHHHHHHHhhcCCCCCccCCCCCCCCceEEEcccCCccccCCCCcccCCCCCccccccCCCCcEEeecCCCCCC
Q 028408 89 EWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFM 168 (209)
Q Consensus 89 ewr~~Ltp~qy~Vlr~~GTE~pFsg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~v~~~~D~s~~gm 168 (209)
++-..+......|.+..-..-|-. + ++. .|..|+.+|-...+- .|. ..+. +.
T Consensus 34 ~LSr~Y~~~~~~Is~K~~irlp~~---~--KR~---~Ck~C~s~LIPG~t~----------------~vr-i~~~---~k 85 (123)
T 2k3r_A 34 ELAKRYVELALLVQQKAKVKIPRK---W--KRR---YCKKCHAFLVPGINA----------------RVR-LRQK---RM 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSST---T--TTS---BCTTTCCBCCBTTTE----------------EEE-EECS---SS
T ss_pred HHHHHHHHHHHHHHHHhccCCCHH---H--HHH---hccCCCCEeECCCce----------------EEE-EecC---Cc
Confidence 344445555567777766655432 1 122 899999988432111 122 2221 23
Q ss_pred cEEEEEcCCCCCCccc
Q 028408 169 PRQEVLCAVCDAHLGH 184 (209)
Q Consensus 169 ~RtEV~C~~Cg~HLGH 184 (209)
..+.+.|..||..-=.
T Consensus 86 ~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 86 PHIVVKCLECGHIMRY 101 (123)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCCEEEE
Confidence 5789999999965433
No 23
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=26.41 E-value=31 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.628 Sum_probs=13.5
Q ss_pred CCcEEEEEcCCCCCCcc
Q 028408 167 FMPRQEVLCAVCDAHLG 183 (209)
Q Consensus 167 gm~RtEV~C~~Cg~HLG 183 (209)
...++++.|.+||.+--
T Consensus 10 ~~~~~~~~Cp~Cg~~~~ 26 (57)
T 1qyp_A 10 TLPTTKITCPKCGNDTA 26 (57)
T ss_dssp SSCEEECCCTTTCCSEE
T ss_pred cCCceEeECCCCCCCEE
Confidence 56788999999997544
No 24
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.31 E-value=36 Score=23.03 Aligned_cols=19 Identities=32% Similarity=0.789 Sum_probs=14.1
Q ss_pred EEEcccCCccccCCCCcccCCCCCcc
Q 028408 123 TYHCICCDTPLFESSTKFDSGTGWPS 148 (209)
Q Consensus 123 iY~C~~Cg~pLF~S~~KFdSg~GWPS 148 (209)
.|.|..|| .-||.--|+|.
T Consensus 3 ~y~C~vCG-------yvYd~~~Gdp~ 21 (54)
T 4rxn_A 3 KYTCTVCG-------YIYDPEDGDPD 21 (54)
T ss_dssp CEEETTTC-------CEECTTTCBGG
T ss_pred ceECCCCC-------eEECCCcCCcc
Confidence 59999999 35676667764
No 25
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=25.27 E-value=27 Score=24.34 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=8.5
Q ss_pred cccCCccccCCC
Q 028408 126 CICCDTPLFESS 137 (209)
Q Consensus 126 C~~Cg~pLF~S~ 137 (209)
|..||.++.++.
T Consensus 21 CP~CG~~T~~~h 32 (60)
T 2apo_B 21 CPKCGEKTVIPK 32 (60)
T ss_dssp CSSSCSBCBCCC
T ss_pred CcCCCCcCCCCC
Confidence 788888875543
No 26
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=24.67 E-value=28 Score=27.03 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=13.0
Q ss_pred CCCceEEEccc--CCccccCCC
Q 028408 118 TKTPGTYHCIC--CDTPLFESS 137 (209)
Q Consensus 118 ~~~~GiY~C~~--Cg~pLF~S~ 137 (209)
..+.|+|.|++ ++..+|...
T Consensus 216 ~~DsG~Y~C~~~n~~~~~fg~g 237 (253)
T 3uzq_A 216 ADDVATYFCQRSNEVPWTFGGG 237 (253)
T ss_dssp GGGCEEEEEEECSSSSCCBCCC
T ss_pred HHHCEEEEEEEccCCCcEECCC
Confidence 45789999987 343444433
No 27
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=24.50 E-value=24 Score=27.58 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=9.2
Q ss_pred CCCceEEEccc
Q 028408 118 TKTPGTYHCIC 128 (209)
Q Consensus 118 ~~~~GiY~C~~ 128 (209)
..+.|+|.|++
T Consensus 218 ~~DsG~Y~C~~ 228 (259)
T 3omz_A 218 LEDSAKYFCAL 228 (259)
T ss_dssp GGGCSEEEEEE
T ss_pred hhHCEEEEEEE
Confidence 45789999987
No 28
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=24.23 E-value=32 Score=23.94 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=24.7
Q ss_pred ceEEEcccCCccccCCCCcccCCCCC-cc
Q 028408 121 PGTYHCICCDTPLFESSTKFDSGTGW-PS 148 (209)
Q Consensus 121 ~GiY~C~~Cg~pLF~S~~KFdSg~GW-PS 148 (209)
.-.=.|..||..-|.-..+.=+.||+ |+
T Consensus 15 ktH~~CrRCG~~syH~qK~~Ca~CGygpa 43 (57)
T 1vq8_1 15 TTHTKCRRCGEKSYHTKKKVCSSCGFGKS 43 (57)
T ss_dssp CCEEECTTTCSEEEETTTTEETTTCTTTC
T ss_pred CccccccccCChhhhccccccccccCCch
Confidence 34568999999999999999999999 87
No 29
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.91 E-value=32 Score=24.27 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEEcccCCccccCCCCcccCCCCC-cc
Q 028408 123 TYHCICCDTPLFESSTKFDSGTGW-PS 148 (209)
Q Consensus 123 iY~C~~Cg~pLF~S~~KFdSg~GW-PS 148 (209)
.=.|..||.--|.-..+.-+.||+ ||
T Consensus 17 H~lCrRCG~~syH~qK~~Ca~CGygps 43 (62)
T 3j21_e 17 HIRCRRCGRVSYNVKKGYCAACGFGRS 43 (62)
T ss_dssp CCBCSSSCSBCEETTTTEETTTCTTTC
T ss_pred eeeecccCcchhccccccccccCCchh
Confidence 347999999999999999999999 64
No 30
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=23.63 E-value=29 Score=24.10 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=9.6
Q ss_pred CCCceEEEcccC
Q 028408 118 TKTPGTYHCICC 129 (209)
Q Consensus 118 ~~~~GiY~C~~C 129 (209)
..+.|+|.|+.-
T Consensus 88 ~~DsG~Y~C~~~ 99 (115)
T 2atp_B 88 PEDSDFYFCATV 99 (115)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEeEc
Confidence 457899999874
No 31
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.57 E-value=99 Score=22.54 Aligned_cols=20 Identities=35% Similarity=1.024 Sum_probs=14.6
Q ss_pred ceEEEcccCCccccCCCCcccCCCCCc
Q 028408 121 PGTYHCICCDTPLFESSTKFDSGTGWP 147 (209)
Q Consensus 121 ~GiY~C~~Cg~pLF~S~~KFdSg~GWP 147 (209)
...|.|.+||. -||.-.|+|
T Consensus 25 m~~y~C~vCGy-------vYD~~~Gdp 44 (81)
T 2kn9_A 25 YKLFRCIQCGF-------EYDEALGWP 44 (81)
T ss_dssp CCEEEETTTCC-------EEETTTCBT
T ss_pred cceEEeCCCCE-------EEcCCcCCc
Confidence 45899999994 356666665
No 32
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=22.99 E-value=30 Score=24.02 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=9.5
Q ss_pred CCCceEEEcccC
Q 028408 118 TKTPGTYHCICC 129 (209)
Q Consensus 118 ~~~~GiY~C~~C 129 (209)
..+.|+|.|+.-
T Consensus 85 ~~DsG~Y~C~~~ 96 (116)
T 1tvd_A 85 TEDSATYYCAFT 96 (116)
T ss_dssp GGGCEEEEEEEE
T ss_pred hHHCEEEEEEEe
Confidence 357899999874
No 33
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=22.71 E-value=43 Score=24.03 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=11.5
Q ss_pred cccCCCCcEEeecCCCCCCcEEEEEcCCCCCC
Q 028408 150 YQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAH 181 (209)
Q Consensus 150 ~~pi~~~v~~~~D~s~~gm~RtEV~C~~Cg~H 181 (209)
|+-++..|....-...+.-.+++|.|+.|+.-
T Consensus 15 ~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~ 46 (79)
T 2k2d_A 15 WRQLDDEVAQTPMPSEYQNMTVDILCNDCNGR 46 (79)
T ss_dssp ------------------CCEEEEEESSSCCE
T ss_pred HHHHHHHHHhCCCCHHHhCCEeEEECCCCCCC
Confidence 45566656543322222345789999999974
No 34
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=22.40 E-value=31 Score=26.17 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=24.7
Q ss_pred eEEEcccCCccccCCCCcccCCCCCccc
Q 028408 122 GTYHCICCDTPLFESSTKFDSGTGWPSY 149 (209)
Q Consensus 122 GiY~C~~Cg~pLF~S~~KFdSg~GWPSF 149 (209)
-.-.|..||.--|.-..+.-+.||+|+=
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyps~ 42 (94)
T 4a18_A 15 THTLCRRCGKATYHKQKLRCAACGYPDA 42 (94)
T ss_dssp CEEECTTTCSEEEETTTTEESSSCGGGS
T ss_pred ccceecCcCchhhhhccccccccCCcHH
Confidence 4668999999999999999999999953
No 35
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=21.28 E-value=44 Score=25.46 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=26.5
Q ss_pred ceEEEcccCCccccCCCCcccCCCCCccccccC
Q 028408 121 PGTYHCICCDTPLFESSTKFDSGTGWPSYYQPI 153 (209)
Q Consensus 121 ~GiY~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi 153 (209)
.-.-.|..||..-|.=+.+.=+.||+|++-.--
T Consensus 14 KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R~ 46 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRK 46 (97)
T ss_dssp CCEECCTTTCSSCEETTSCCBTTTCTTTSSCCC
T ss_pred CCCCcCCCCCCccCcCccccCcccCCchHhccC
Confidence 445689999999998877777789999986543
No 36
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=21.27 E-value=47 Score=22.99 Aligned_cols=13 Identities=15% Similarity=0.352 Sum_probs=10.0
Q ss_pred CCCceEEEcccCC
Q 028408 118 TKTPGTYHCICCD 130 (209)
Q Consensus 118 ~~~~GiY~C~~Cg 130 (209)
..+.|+|.|+.-.
T Consensus 87 ~~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 87 PEDTAVYYCYTHY 99 (114)
T ss_dssp GGGCSEEEEEECC
T ss_pred HHHCEEEEEeEEc
Confidence 4578999998753
No 37
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=20.93 E-value=34 Score=23.56 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=8.9
Q ss_pred CCCceEEEccc
Q 028408 118 TKTPGTYHCIC 128 (209)
Q Consensus 118 ~~~~GiY~C~~ 128 (209)
..+.|+|.|++
T Consensus 81 ~~DsG~Y~C~~ 91 (109)
T 1pew_A 81 TEDEADYYCQS 91 (109)
T ss_dssp GGGCEEEEEEE
T ss_pred hhhCEEEEEEE
Confidence 35789999986
No 38
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=20.73 E-value=31 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=24.5
Q ss_pred eEEEcccCCccccCCCCcccCCCCCcc
Q 028408 122 GTYHCICCDTPLFESSTKFDSGTGWPS 148 (209)
Q Consensus 122 GiY~C~~Cg~pLF~S~~KFdSg~GWPS 148 (209)
-.-.|..||.--|.-..+.-+.||+||
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 3iz5_l 15 THTLCVRCGRRSFHLQKSTCSSCGYPA 41 (94)
T ss_dssp SEEECTTTCSEEEEGGGTEETTTCSSC
T ss_pred ccceecCcCchhhhcccccccccCCch
Confidence 356899999999999999999999996
No 39
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=20.38 E-value=45 Score=22.84 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=10.5
Q ss_pred CCCCceEEEcccCC
Q 028408 117 NTKTPGTYHCICCD 130 (209)
Q Consensus 117 ~~~~~GiY~C~~Cg 130 (209)
...+.|+|.|++-.
T Consensus 79 ~~~DsG~Y~C~~~~ 92 (108)
T 1qfw_M 79 QAEDFADYHCGQTY 92 (108)
T ss_dssp CTTCCSEEEEEECS
T ss_pred ChhhCEEEEEEEcc
Confidence 34578999998753
Done!