Query 028409
Match_columns 209
No_of_seqs 188 out of 779
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 11:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01159 DRP1 density-regulat 100.0 5E-59 1.1E-63 389.2 11.7 172 7-187 1-173 (173)
2 KOG3239 Density-regulated prot 100.0 5.5E-56 1.2E-60 368.8 10.5 174 1-186 1-184 (193)
3 PF01253 SUI1: Translation ini 99.9 1.4E-25 3.1E-30 166.5 9.6 82 99-181 1-82 (83)
4 COG0023 SUI1 Translation initi 99.9 7.1E-24 1.5E-28 164.5 8.8 83 97-186 21-103 (104)
5 cd00474 SUI1_eIF1 The SUI1/eIF 99.9 7.6E-23 1.7E-27 151.1 8.1 76 104-186 1-76 (77)
6 TIGR01160 SUI1_MOF2 translatio 99.9 4E-22 8.7E-27 156.3 8.7 84 101-186 24-107 (110)
7 PRK00939 translation initiatio 99.9 3.9E-22 8.4E-27 153.7 8.3 77 102-185 23-99 (99)
8 TIGR01158 SUI1_rel translation 99.8 3.3E-20 7.2E-25 143.3 8.8 77 101-184 22-99 (101)
9 KOG2522 Filamentous baseplate 99.8 3.6E-19 7.9E-24 166.3 5.8 97 97-194 461-558 (560)
10 KOG1770 Translation initiation 99.7 8.2E-18 1.8E-22 130.4 8.9 84 101-186 26-109 (112)
11 PRK06824 translation initiatio 99.7 1.2E-17 2.6E-22 132.5 7.5 73 102-181 40-113 (118)
12 PRK07451 translation initiatio 99.7 1.5E-17 3.4E-22 131.3 7.4 74 101-181 36-110 (115)
13 PRK09019 translation initiatio 99.7 2.2E-17 4.9E-22 129.1 7.1 73 101-180 29-102 (108)
14 PF05046 Img2: Mitochondrial l 97.5 0.0007 1.5E-08 51.0 7.6 58 112-175 22-85 (87)
15 PRK03988 translation initiatio 92.9 0.26 5.7E-06 40.3 5.5 65 102-176 30-98 (138)
16 TIGR00311 aIF-2beta translatio 92.8 0.28 6.1E-06 39.8 5.6 65 102-176 25-93 (133)
17 smart00653 eIF2B_5 domain pres 92.3 0.4 8.7E-06 37.7 5.7 67 102-176 6-76 (110)
18 PRK14434 acylphosphatase; Prov 91.5 0.83 1.8E-05 34.6 6.5 71 119-190 6-78 (92)
19 PRK14444 acylphosphatase; Prov 90.7 1.4 3.1E-05 33.2 7.1 70 119-190 8-77 (92)
20 PRK14451 acylphosphatase; Prov 90.6 1.3 2.9E-05 33.2 6.8 67 121-189 9-75 (89)
21 KOG4034 Uncharacterized conser 90.5 0.72 1.6E-05 38.8 5.7 70 102-175 95-167 (169)
22 PRK14440 acylphosphatase; Prov 90.3 1.8 3.9E-05 32.6 7.3 69 119-189 7-75 (90)
23 PRK14449 acylphosphatase; Prov 90.3 1.5 3.2E-05 32.9 6.8 69 119-189 7-75 (90)
24 PRK14437 acylphosphatase; Prov 89.7 1.5 3.3E-05 34.3 6.7 68 119-188 27-94 (109)
25 PRK14425 acylphosphatase; Prov 89.6 1.3 2.9E-05 33.5 6.2 68 119-188 10-77 (94)
26 PRK14436 acylphosphatase; Prov 89.5 1.9 4.1E-05 32.5 6.8 68 120-189 9-76 (91)
27 PF01873 eIF-5_eIF-2B: Domain 88.9 0.55 1.2E-05 37.7 3.7 68 101-176 18-89 (125)
28 PRK12336 translation initiatio 88.6 1.1 2.4E-05 38.5 5.7 65 102-176 26-94 (201)
29 PRK14422 acylphosphatase; Prov 88.5 2.6 5.6E-05 31.9 7.0 68 119-188 10-77 (93)
30 PRK14438 acylphosphatase; Prov 88.4 1.9 4.2E-05 32.4 6.2 69 119-189 7-75 (91)
31 PRK14429 acylphosphatase; Prov 88.4 1.9 4.1E-05 32.3 6.2 69 120-190 7-75 (90)
32 PRK14446 acylphosphatase; Prov 88.4 1.6 3.6E-05 32.8 5.8 67 119-187 6-72 (88)
33 PRK14443 acylphosphatase; Prov 88.2 2 4.3E-05 32.7 6.2 66 119-186 8-74 (93)
34 PRK14428 acylphosphatase; Prov 88.0 2.5 5.5E-05 32.4 6.8 68 119-188 12-79 (97)
35 PRK14445 acylphosphatase; Prov 87.9 2.1 4.6E-05 32.1 6.2 69 119-189 8-76 (91)
36 PRK14433 acylphosphatase; Prov 87.9 2.5 5.5E-05 31.6 6.5 67 119-187 5-71 (87)
37 PRK14452 acylphosphatase; Prov 87.8 3.3 7.2E-05 32.4 7.4 68 119-188 24-91 (107)
38 PRK14442 acylphosphatase; Prov 87.7 2.7 5.9E-05 31.6 6.7 69 119-189 8-76 (91)
39 PRK14420 acylphosphatase; Prov 87.6 2.7 5.9E-05 31.4 6.6 69 119-189 6-74 (91)
40 PRK14427 acylphosphatase; Prov 87.4 2.5 5.4E-05 32.1 6.3 68 119-188 10-77 (94)
41 PRK14435 acylphosphatase; Prov 87.4 2.7 5.9E-05 31.6 6.5 70 119-190 6-75 (90)
42 PRK14423 acylphosphatase; Prov 86.9 2.6 5.6E-05 31.7 6.1 68 120-189 10-77 (92)
43 PRK14426 acylphosphatase; Prov 86.4 3.6 7.7E-05 31.0 6.7 70 119-190 8-78 (92)
44 PRK14421 acylphosphatase; Prov 85.9 3.5 7.6E-05 31.7 6.5 70 119-190 8-77 (99)
45 PRK14424 acylphosphatase; Prov 85.8 5.4 0.00012 30.4 7.4 84 118-207 10-93 (94)
46 PF00708 Acylphosphatase: Acyl 85.7 3 6.5E-05 30.8 5.9 69 119-189 8-76 (91)
47 PRK14447 acylphosphatase; Prov 85.5 3.9 8.4E-05 31.0 6.5 69 119-189 8-77 (95)
48 PRK14450 acylphosphatase; Prov 85.4 5.1 0.00011 30.0 7.1 68 119-190 6-76 (91)
49 PRK14432 acylphosphatase; Prov 84.7 4.6 0.0001 30.6 6.6 69 119-189 6-75 (93)
50 PRK14448 acylphosphatase; Prov 84.1 5.9 0.00013 29.7 6.9 67 119-187 6-72 (90)
51 PRK14439 acylphosphatase; Prov 83.7 4.8 0.0001 34.0 6.8 71 118-190 78-149 (163)
52 TIGR02174 CXXU_selWTH selT/sel 83.3 1 2.2E-05 32.4 2.4 29 8-43 1-29 (72)
53 PRK14441 acylphosphatase; Prov 83.1 5.6 0.00012 30.0 6.5 70 119-190 9-78 (93)
54 PRK14430 acylphosphatase; Prov 76.1 13 0.00028 28.1 6.4 68 119-188 8-75 (92)
55 PRK14431 acylphosphatase; Prov 74.7 14 0.00031 27.7 6.3 67 119-188 6-73 (89)
56 PF10262 Rdx: Rdx family; Int 72.4 3.6 7.9E-05 29.6 2.6 30 8-44 3-32 (76)
57 COG1254 AcyP Acylphosphatases 62.7 47 0.001 25.3 7.0 65 119-185 8-72 (92)
58 PRK05412 putative nucleotide-b 50.6 29 0.00062 29.3 4.4 62 115-184 91-157 (161)
59 cd00367 PTS-HPr_like Histidine 42.5 89 0.0019 22.1 5.5 40 127-174 36-75 (77)
60 PF04461 DUF520: Protein of un 39.8 37 0.00079 28.7 3.4 62 115-184 91-157 (160)
61 PF14803 Nudix_N_2: Nudix N-te 38.5 13 0.00027 23.5 0.4 11 12-22 2-12 (34)
62 PRK10721 hypothetical protein; 36.7 27 0.00058 25.4 1.9 31 164-197 7-37 (66)
63 COG1601 GCD7 Translation initi 36.0 56 0.0012 27.2 3.9 49 118-170 43-95 (151)
64 TIGR03412 iscX_yfhJ FeS assemb 35.9 27 0.00058 25.2 1.8 31 164-197 4-34 (63)
65 PRK10897 phosphohistidinoprote 35.1 1.4E+02 0.0031 22.3 5.7 40 129-176 44-83 (90)
66 PF10691 DUF2497: Protein of u 34.9 17 0.00037 26.7 0.6 18 32-49 47-64 (73)
67 cd01057 AAMH_A Aromatic and Al 33.3 20 0.00043 34.8 1.0 33 12-45 382-430 (465)
68 PF00381 PTS-HPr: PTS HPr comp 32.8 68 0.0015 23.1 3.6 38 129-174 42-79 (84)
69 COG1872 Uncharacterized conser 31.7 51 0.0011 25.8 2.9 28 160-188 47-74 (102)
70 PTZ00450 macrophage migration 29.8 53 0.0011 25.7 2.7 31 164-196 77-107 (113)
71 PRK13780 phosphocarrier protei 27.9 1.6E+02 0.0035 21.8 4.9 40 129-176 42-81 (88)
72 PF04739 AMPKBI: 5'-AMP-activa 26.9 93 0.002 24.1 3.6 22 100-121 74-95 (100)
73 cd06402 PB1_p62 The PB1 domain 26.3 1.1E+02 0.0024 23.1 3.8 42 157-208 18-62 (87)
74 PF06220 zf-U1: U1 zinc finger 25.5 13 0.00029 23.8 -1.1 17 18-40 1-17 (38)
75 PF04384 Fe-S_assembly: Iron-s 24.2 50 0.0011 23.8 1.5 32 163-197 4-35 (64)
76 COG4282 SMI1 Protein involved 23.9 55 0.0012 28.2 1.9 25 28-52 10-34 (191)
77 KOG0023 Alcohol dehydrogenase, 23.8 38 0.00082 32.0 1.0 34 115-153 182-215 (360)
78 TIGR01286 nifK nitrogenase mol 23.8 1.3E+02 0.0028 29.5 4.7 66 114-181 219-312 (515)
79 PF02594 DUF167: Uncharacteris 23.6 99 0.0022 22.6 3.1 25 162-187 39-63 (77)
80 COG2975 Uncharacterized protei 22.7 68 0.0015 23.0 1.9 29 165-196 6-34 (64)
81 PF08421 Methyltransf_13: Puta 21.7 46 0.00099 23.2 0.9 14 5-18 35-48 (62)
82 PRK01343 zinc-binding protein; 21.5 66 0.0014 22.7 1.7 32 8-40 7-44 (57)
83 PTZ00397 macrophage migration 21.2 97 0.0021 23.6 2.7 23 164-187 77-99 (116)
84 TIGR01003 PTS_HPr_family Phosp 21.0 2.6E+02 0.0056 20.2 4.9 38 129-174 42-79 (82)
85 PF09297 zf-NADH-PPase: NADH p 21.0 39 0.00085 20.3 0.4 15 11-25 4-18 (32)
86 PF11388 DotA: Phagosome traff 20.8 58 0.0013 25.4 1.4 23 120-142 3-25 (105)
87 KOG1493 Anaphase-promoting com 20.6 34 0.00073 25.8 0.0 11 12-22 22-32 (84)
88 cd02394 vigilin_like_KH K homo 20.3 2.1E+02 0.0045 18.9 4.0 34 137-171 24-57 (62)
No 1
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=100.00 E-value=5e-59 Score=389.23 Aligned_cols=172 Identities=41% Similarity=0.716 Sum_probs=144.3
Q ss_pred ceeEEEcCCCCCCccccccCCChhhhHHHHHHhCCCchhHHHhhhhhhHHHHhhhhhhhccCCCCCCCCCCCCCCC-cch
Q 028409 7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSSGGADGATSGQTS-SSK 85 (209)
Q Consensus 7 p~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~p~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~kk 85 (209)
|++|+||||||||+|||||||++++|++||++||||||++||.+. .+++.+..+++|...+..+.. + .++
T Consensus 1 p~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~k~ 71 (173)
T TIGR01159 1 PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTD------SPTAEAEAVTIGEAQEEKGEK---DLLGI 71 (173)
T ss_pred CceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHHHHHHhhcc------cchhccccchhhHHHHhhhhh---hhhHH
Confidence 789999999999999999999999999999999999999999842 222222112333222221111 2 344
Q ss_pred HHHhhhCCCCccccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCch
Q 028409 86 QEEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIS 165 (209)
Q Consensus 86 ~~k~~~~~~~~~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~ 165 (209)
+.+..+++.++.+|+.+++|+|++++|+|||+||+|+||+.|++||++|||.|+++||||+||++++.++++|+|||||+
T Consensus 72 ~~~~~~~~~~~~kK~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~ 151 (173)
T TIGR01159 72 QKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVM 151 (173)
T ss_pred HhhhhhhhhhhhccCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHH
Confidence 44444566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCCCCCcEEEe
Q 028409 166 YDIVEFITDTWPAVISLSIFFS 187 (209)
Q Consensus 166 ~~i~~~L~~~~~gIp~~~I~~~ 187 (209)
++|.++|.++|++||+++|+++
T Consensus 152 ~~v~e~L~~~~~~v~e~~I~~~ 173 (173)
T TIGR01159 152 DDIEDYIHEKWPEVGDKDIKDL 173 (173)
T ss_pred HHHHHHHHHHcCCCCHHHeeeC
Confidence 9999999999999999999874
No 2
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Probab=100.00 E-value=5.5e-56 Score=368.78 Aligned_cols=174 Identities=43% Similarity=0.782 Sum_probs=141.6
Q ss_pred CCCCCCcee--EEEcCCCCCCccccccCCChhhhHHHHHHhCCCchhHHHhhhhhhHHHHhhhhhhhccCCC-CCCCCCC
Q 028409 1 MAEKPQPVR--VLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELYPDLLKEANEKEAEKVSGQLQLFGLSS-GGADGAT 77 (209)
Q Consensus 1 m~~~~~p~~--V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~p~l~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 77 (209)
||+.+.|+. |+|||+||||+|||||+|++++|++||+.||||||++||.+.+.+.+ . ..|. .+.+|++
T Consensus 1 ~a~k~~P~~~~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~~qe------~---~~s~~~~a~G~~ 71 (193)
T KOG3239|consen 1 MADKLGPRKGSVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDPKQE------V---EASTAEGADGEA 71 (193)
T ss_pred CCccCCCcccceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccChhhh------h---cccccccccCCc
Confidence 888888888 99999999999999999999999999999999999999986432211 1 1111 1222222
Q ss_pred CCCCCcchH-------HHhhhCCCCccccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeee
Q 028409 78 SGQTSSSKQ-------EEVKRLPGGKIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVK 150 (209)
Q Consensus 78 ~~~~~~kk~-------~k~~~~~~~~~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k 150 (209)
. +.+++ .+++.+.+++.+|+.+++|.|.++.|++||+||+|+||+.|+|||+.+||.|+++||||+||++
T Consensus 72 ~---e~k~ek~~gk~~k~~~~~~~~e~~k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk 148 (193)
T KOG3239|consen 72 D---EKKKEKRGGKGQKKQENRSQREKKKRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTK 148 (193)
T ss_pred h---hhHHHhccccchhhhhhHHHHHHhccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccC
Confidence 1 11111 1122223345567789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEE
Q 028409 151 GPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFF 186 (209)
Q Consensus 151 ~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~ 186 (209)
++.+.+||+||||+.++|.+||.++|+.+|++++.+
T Consensus 149 ~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~ed~~~I 184 (193)
T KOG3239|consen 149 NAEKKDEIVIQGDVKDDIFDFIPEKWPEVPEDDVKI 184 (193)
T ss_pred CCCccceEEEeccchHHHHHHHHHhcccCCccccee
Confidence 999999999999999999999999999999996444
No 3
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.93 E-value=1.4e-25 Score=166.53 Aligned_cols=82 Identities=40% Similarity=0.632 Sum_probs=70.9
Q ss_pred cCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCC
Q 028409 99 KKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178 (209)
Q Consensus 99 K~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~g 178 (209)
|+..++|+|++++|+|||+||+|+||+.|++|+++||+.|+++||||+||+++++++.+|+|||||+++|.++|.++| +
T Consensus 1 k~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~-~ 79 (83)
T PF01253_consen 1 KKEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG-G 79 (83)
T ss_dssp -S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC-S
T ss_pred CCCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC-C
Confidence 467899999999999999999999999999999999999999999999999988668899999999999999999998 7
Q ss_pred CCC
Q 028409 179 VIS 181 (209)
Q Consensus 179 Ip~ 181 (209)
+|+
T Consensus 80 ~~k 82 (83)
T PF01253_consen 80 IPK 82 (83)
T ss_dssp SE-
T ss_pred CCC
Confidence 775
No 4
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.1e-24 Score=164.49 Aligned_cols=83 Identities=33% Similarity=0.460 Sum_probs=77.1
Q ss_pred cccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 97 IKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 97 ~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
..+...+.|+|++++|++||.||+|+||+.|++||++||+.|+++||||+|| ++++|+|||||++.|.+||.+
T Consensus 21 ~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv-----k~~~IeiQGdhr~~v~~~L~~-- 93 (104)
T COG0023 21 VAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-----KDGEIEIQGDHRDKVKELLIK-- 93 (104)
T ss_pred cccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee-----cCCEEEEeChHHHHHHHHHHH--
Confidence 3445688999999999999999999999999999999999999999999999 667999999999999999999
Q ss_pred CCCCCCcEEE
Q 028409 177 PAVISLSIFF 186 (209)
Q Consensus 177 ~gIp~~~I~~ 186 (209)
.|++.++|.+
T Consensus 94 ~G~k~k~i~~ 103 (104)
T COG0023 94 KGFKVKNIGI 103 (104)
T ss_pred cCCchhhccc
Confidence 4999999875
No 5
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.88 E-value=7.6e-23 Score=151.06 Aligned_cols=76 Identities=37% Similarity=0.415 Sum_probs=71.2
Q ss_pred cEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCc
Q 028409 104 EVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLS 183 (209)
Q Consensus 104 ~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~ 183 (209)
.|+|++++|++||+||+|+||+.|++|++++|+.|+++||||+||. +++|+|||||++.|.+||.++ |+++++
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~-----~~~I~lQGD~r~~v~~~L~~~--g~~~~~ 73 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVK-----DEVIELQGDQRKKIKEFLIKM--GFAKDN 73 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEe-----cCEEEEeCcHHHHHHHHHHHc--CCCHHH
Confidence 3899999999999999999999999999999999999999999994 489999999999999999884 999988
Q ss_pred EEE
Q 028409 184 IFF 186 (209)
Q Consensus 184 I~~ 186 (209)
|.+
T Consensus 74 i~i 76 (77)
T cd00474 74 IKI 76 (77)
T ss_pred eEe
Confidence 875
No 6
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.87 E-value=4e-22 Score=156.26 Aligned_cols=84 Identities=30% Similarity=0.378 Sum_probs=77.6
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC
Q 028409 101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI 180 (209)
Q Consensus 101 ~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp 180 (209)
....|+|++++|+|||.||+|+||+. .+||++|||.|+++|||||||.+.++++++|+|||||+++|.+||.++. -++
T Consensus 24 ~~~~I~Iri~qR~grK~VTiI~Gl~~-~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g-~~~ 101 (110)
T TIGR01160 24 TSNYIHIRIQQRNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQG-LLK 101 (110)
T ss_pred ccceEEEEEEEccCCccEEEEeccCC-hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcC-CCC
Confidence 35689999999999999999999994 9999999999999999999999888888999999999999999999974 579
Q ss_pred CCcEEE
Q 028409 181 SLSIFF 186 (209)
Q Consensus 181 ~~~I~~ 186 (209)
+++|.+
T Consensus 102 ~~~i~v 107 (110)
T TIGR01160 102 KDQIKI 107 (110)
T ss_pred HHHeee
Confidence 998976
No 7
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.87 E-value=3.9e-22 Score=153.72 Aligned_cols=77 Identities=29% Similarity=0.407 Sum_probs=72.3
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVIS 181 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~ 181 (209)
.++|+|++++|+|||+||+|+||+.|++|++++|+.|+++||||+|| ++++|+|||||+++|.+||.+ + |+|.
T Consensus 23 ~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv-----k~~~I~iQGD~r~~v~~~L~~-~-G~~~ 95 (99)
T PRK00939 23 QQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-----KDGRIELQGDHRERVKELLIK-M-GFSE 95 (99)
T ss_pred CceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE-----ECCEEEEeCcHHHHHHHHHHH-c-CCCh
Confidence 37999999999999999999999999999999999999999999999 457899999999999999987 4 9999
Q ss_pred CcEE
Q 028409 182 LSIF 185 (209)
Q Consensus 182 ~~I~ 185 (209)
++|+
T Consensus 96 ~~i~ 99 (99)
T PRK00939 96 ENIE 99 (99)
T ss_pred hhcC
Confidence 9885
No 8
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.82 E-value=3.3e-20 Score=143.34 Aligned_cols=77 Identities=31% Similarity=0.463 Sum_probs=71.7
Q ss_pred CCCcEEEEEEee-cCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409 101 ERQEVVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179 (209)
Q Consensus 101 ~~~~V~I~~~~R-~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI 179 (209)
+.+.|+|++++| +|+|.||+|+||+.|++|++++||.|+++||||+|| ++++|+|||||++.|.++|.+ .|+
T Consensus 22 ~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv-----k~~~IeiQGD~~~~v~~~L~~--~G~ 94 (101)
T TIGR01158 22 EDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV-----KDGVIEIQGDHRDRVKDLLEK--KGF 94 (101)
T ss_pred CCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE-----eCCEEEEeCcHHHHHHHHHHH--cCC
Confidence 467999999999 789999999999999999999999999999999999 568999999999999999988 389
Q ss_pred CCCcE
Q 028409 180 ISLSI 184 (209)
Q Consensus 180 p~~~I 184 (209)
|.++|
T Consensus 95 ~~k~~ 99 (101)
T TIGR01158 95 KVKLI 99 (101)
T ss_pred Ceeec
Confidence 98765
No 9
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.6e-19 Score=166.32 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=92.0
Q ss_pred cccCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCC-CceEEEcCCchhHHHHHHhhh
Q 028409 97 IKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDT 175 (209)
Q Consensus 97 ~kK~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~-~~eI~IQGD~~~~i~~~L~~~ 175 (209)
+|||..++|.|.+++|.|||.||.|+|||.|+||+..+|..|+++|+||+||...|+. +-||+|||+|.+.|.++|.+.
T Consensus 461 vkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~ 540 (560)
T KOG2522|consen 461 VKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKS 540 (560)
T ss_pred eecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999998884 579999999999999999999
Q ss_pred CCCCCCCcEEEecccccch
Q 028409 176 WPAVISLSIFFSFSCVLHK 194 (209)
Q Consensus 176 ~~gIp~~~I~~~dk~~~~~ 194 (209)
| |||.++|++.+|++=+|
T Consensus 541 y-gipkK~I~gleka~Kkk 558 (560)
T KOG2522|consen 541 Y-GIPKKWIDGLEKAKKKK 558 (560)
T ss_pred h-CCCHHHHhHHHHhhccc
Confidence 9 99999999999987543
No 10
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=8.2e-18 Score=130.42 Aligned_cols=84 Identities=30% Similarity=0.400 Sum_probs=78.6
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC
Q 028409 101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI 180 (209)
Q Consensus 101 ~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp 180 (209)
...-|||++++|+|||++|+|+||.. .+|++.+.+.|++.|||+++|++.|..++.|++|||++..|.+||...- .+.
T Consensus 26 ~~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g-~~k 103 (112)
T KOG1770|consen 26 TEKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG-LVK 103 (112)
T ss_pred ccceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc-ccc
Confidence 34489999999999999999999998 6899999999999999999999999999999999999999999999986 788
Q ss_pred CCcEEE
Q 028409 181 SLSIFF 186 (209)
Q Consensus 181 ~~~I~~ 186 (209)
+++|.+
T Consensus 104 ~~~iki 109 (112)
T KOG1770|consen 104 KDNIKI 109 (112)
T ss_pred ccceee
Confidence 888876
No 11
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.72 E-value=1.2e-17 Score=132.46 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=66.0
Q ss_pred CCcEEEEEEee-cCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC
Q 028409 102 RQEVVIEKVVR-NKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI 180 (209)
Q Consensus 102 ~~~V~I~~~~R-~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp 180 (209)
...|+|++++| +++|.||+|+||+....|+++|||.|+++|+||+|| ++++|+|||||++.|.+||.++ |+.
T Consensus 40 ~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv-----kd~~IeiQGD~r~~v~~~L~~~--G~~ 112 (118)
T PRK06824 40 DGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL-----KDGVIEIQGDHVELLLAELLKR--GFK 112 (118)
T ss_pred CceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE-----ecCEEEEcCcHHHHHHHHHHHC--CCe
Confidence 45899988876 588999999999999999999999999999999999 6689999999999999999884 655
Q ss_pred C
Q 028409 181 S 181 (209)
Q Consensus 181 ~ 181 (209)
.
T Consensus 113 ~ 113 (118)
T PRK06824 113 A 113 (118)
T ss_pred E
Confidence 4
No 12
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.71 E-value=1.5e-17 Score=131.29 Aligned_cols=74 Identities=22% Similarity=0.378 Sum_probs=63.8
Q ss_pred CCCcEEEEEEe-ecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409 101 ERQEVVIEKVV-RNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179 (209)
Q Consensus 101 ~~~~V~I~~~~-R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI 179 (209)
..+.|.|++++ ++++|.||+|+||..++.|+++|||.|+++|+||+|| ++++|+|||||+++|.+||.++ |+
T Consensus 36 ~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv-----kd~~IelQGD~r~~v~~~L~~~--Gf 108 (115)
T PRK07451 36 QQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV-----KDNTIEIQGDHRQKILEILIKL--GY 108 (115)
T ss_pred cceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE-----cCCEEEEcCcHHHHHHHHHHHC--CC
Confidence 45677777543 3357999999999999999999999999999999999 7789999999999999999884 66
Q ss_pred CC
Q 028409 180 IS 181 (209)
Q Consensus 180 p~ 181 (209)
..
T Consensus 109 ~~ 110 (115)
T PRK07451 109 KA 110 (115)
T ss_pred eE
Confidence 43
No 13
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.71 E-value=2.2e-17 Score=129.11 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=64.5
Q ss_pred CCCcEEEEEEeec-CCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409 101 ERQEVVIEKVVRN-KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179 (209)
Q Consensus 101 ~~~~V~I~~~~R~-grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI 179 (209)
....|.|++++++ ++|.||+|+||.....|+++|||.|+++||||+|| ++++|+|||||++.|.+||.++ |+
T Consensus 29 ~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtv-----k~~~IelQGD~r~~v~~~L~~~--Gf 101 (108)
T PRK09019 29 GDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK--GM 101 (108)
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeE-----EcCEEEEcCcHHHHHHHHHHHC--CC
Confidence 4568888877653 57999999999989999999999999999999999 5689999999999999999884 65
Q ss_pred C
Q 028409 180 I 180 (209)
Q Consensus 180 p 180 (209)
.
T Consensus 102 ~ 102 (108)
T PRK09019 102 K 102 (108)
T ss_pred e
Confidence 4
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=97.45 E-value=0.0007 Score=50.98 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=47.3
Q ss_pred ecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccce------eeeeCCCCCceEEEcCCchhHHHHHHhhh
Q 028409 112 RNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGA------SVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (209)
Q Consensus 112 R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~------SV~k~~~~~~eI~IQGD~~~~i~~~L~~~ 175 (209)
++|++.+|+|+-++. |+..|.++|++-+.-.. .|. .-.+.|.|+||+..+|.+||.++
T Consensus 22 ~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~---~~~g~i~IkG~~~~~Vk~wL~~~ 85 (87)
T PF05046_consen 22 NGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVN---ELTGHIEIKGDHVEEVKKWLLEK 85 (87)
T ss_pred CCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEe---ecCCEEEEcCccHHHHHHHHHHC
Confidence 347799999999987 89999999999886433 331 24589999999999999999873
No 15
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=92.87 E-value=0.26 Score=40.26 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=50.3
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
.++..+.++ |+| |+|.+|... .-++.-+.|.|.+-+|+.+++ .++..+|+|.+.....+-++.+|
T Consensus 30 ~p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-----~~~~lii~G~~~~~~i~~~L~~y 98 (138)
T PRK03988 30 VPKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-----EGGRLILQGKFSPRVINEKIDRY 98 (138)
T ss_pred CCCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-----cCCEEEEEEeeCHHHHHHHHHHH
Confidence 455566555 444 999998763 567999999999999999999 34899999998777666555554
No 16
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=92.80 E-value=0.28 Score=39.84 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
.++..+.++ |+| |+|.+|... .-+..-+.|.|..-+++.+++ .++..+|+|.+.....+-++.+|
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i-----~~~rlii~G~~~~~~i~~~L~~y 93 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNL-----EGGRLILQGKFTHFLLNERIEDY 93 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCcee-----cCCEEEEEeecCHHHHHHHHHHH
Confidence 455555555 444 999998763 567999999999999999999 34799999998877666555554
No 17
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=92.33 E-value=0.4 Score=37.71 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=50.3
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
.++..+.++ |+| -|+|.+|... .-++.-+.|.|..-+++.+++ ++++..+|+|.+...-.+-++..|
T Consensus 6 ~p~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~i----d~~~rlii~G~~~~~~i~~~l~~y 76 (110)
T smart00653 6 MPPPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSI----DGKGRLIVNGRFTPKKLQDLLRRY 76 (110)
T ss_pred cCCCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeE----CCCCeEEEEEeeCHHHHHHHHHHH
Confidence 345555555 433 6889998763 568999999999999999999 344899999998776666555544
No 18
>PRK14434 acylphosphatase; Provisional
Probab=91.52 E-value=0.83 Score=34.58 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=53.6
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcc-cceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC-CCcEEEeccc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFA-TGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI-SLSIFFSFSC 190 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfA-cg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp-~~~I~~~dk~ 190 (209)
-.|+|.=. |+-..-....++++++ -.+.|...+++.-+|.+||+-.+.|..|+.....+-| ...|+-++..
T Consensus 6 i~v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v~~~ 78 (92)
T PRK14434 6 MIVSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYVDVT 78 (92)
T ss_pred EEEEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 34677766 7888889999999999 9999977777778999999866566666665555665 6666665544
No 19
>PRK14444 acylphosphatase; Provisional
Probab=90.71 E-value=1.4 Score=33.22 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=51.2
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC 190 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~ 190 (209)
-.|+|.-. |+-..-.+..++.+++-++.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++..
T Consensus 8 i~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~i~~~ 77 (92)
T PRK14444 8 VFISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWCYSGPSHARVERVEVH 77 (92)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 45678777 8889999999999999999997777777899999994 3366666554424344555555443
No 20
>PRK14451 acylphosphatase; Provisional
Probab=90.57 E-value=1.3 Score=33.22 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=51.3
Q ss_pred EeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 121 V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
|+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus 9 V~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~~ 75 (89)
T PRK14451 9 ISGRVQ-GVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTWLQKGPLNARVDVCTR 75 (89)
T ss_pred EEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCceEEEEEEE
Confidence 777776 8899999999999999999998888888999999986 336666655543544555555443
No 21
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Probab=90.51 E-value=0.72 Score=38.85 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=45.9
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhh--hcccceeeeeC-CCCCceEEEcCCchhHHHHHHhhh
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGK--KFATGASVVKG-PTEKEQIDVQGDISYDIVEFITDT 175 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkk--kfAcg~SV~k~-~~~~~eI~IQGD~~~~i~~~L~~~ 175 (209)
.-+|-..+..| |+|.+|+|+.++. |.-.|-+.|+. .+.=+.|+... ..-.+.|.+-||+.+.|.++|.++
T Consensus 95 nlPVYl~~k~~-G~k~lT~IRkVeG---Di~aLe~DL~s~L~~~~~~s~~t~VnelsgqI~~~g~~v~~vr~~L~eK 167 (169)
T KOG4034|consen 95 NLPVYLDYKQR-GNKILTVIRKVEG---DIWALENDLRSTLEMSPKKSYATHVNELSGQIVLKGNHVDTVREWLQEK 167 (169)
T ss_pred CcceEEeeecC-CcEEEEEEEeecc---cHHHHHHHHHHHHhhccCCChhhhhhhhcceEEEeCChHHHHHHHHHHc
Confidence 34455554444 7899999999997 44455555544 23333443211 122479999999999999999985
No 22
>PRK14440 acylphosphatase; Provisional
Probab=90.35 E-value=1.8 Score=32.58 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=50.0
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-.|+|.-. |+-........+.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+=|...|+-++.
T Consensus 7 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~gp~~a~V~~i~~ 75 (90)
T PRK14440 7 ARVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLERIKQGPPAAEVEKVDF 75 (90)
T ss_pred EEEEEeEe-ccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHHHhhCCCCcEEEEEEE
Confidence 35666665 7788889999999999999998777777899999986 566666655543434444554443
No 23
>PRK14449 acylphosphatase; Provisional
Probab=90.30 E-value=1.5 Score=32.87 Aligned_cols=69 Identities=13% Similarity=-0.017 Sum_probs=52.4
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-+|+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus 7 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~~~~~a~V~~i~~ 75 (90)
T PRK14449 7 LRITGHVQ-GVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINFIKTGLRWARVDNVEE 75 (90)
T ss_pred EEEEEeec-CcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHHHhhCCCceEEEEEEE
Confidence 45677665 8899999999999999999998877777999999986 336666665554546656665543
No 24
>PRK14437 acylphosphatase; Provisional
Probab=89.66 E-value=1.5 Score=34.31 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=50.6
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
-.|+|.-. |+-..-+...++.+++-.|.|...+++.-+|.+||+.. .|.+|+.....+=|...|+-++
T Consensus 27 i~V~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~L~~gP~~a~V~~i~ 94 (109)
T PRK14437 27 ATVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEWLWEGPPQAAVSNVN 94 (109)
T ss_pred EEEEEecC-CcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEE
Confidence 34577776 88899999999999999999988888889999999865 4555554444344455555444
No 25
>PRK14425 acylphosphatase; Provisional
Probab=89.60 E-value=1.3 Score=33.51 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=48.5
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
-.|+|.-. |+-.......++.+++-.|.|...+++.-+|++||+-.. |.+|+.....+=|...|+-++
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~-le~f~~~l~~gp~~a~V~~i~ 77 (94)
T PRK14425 10 VRITGRVQ-GVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSA-ISAMIERFRRGPPGASVSGVE 77 (94)
T ss_pred EEEEEeEe-cccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEE
Confidence 34567666 788889999999999999999888778899999997554 444544443243444454443
No 26
>PRK14436 acylphosphatase; Provisional
Probab=89.48 E-value=1.9 Score=32.53 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=51.0
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
.|+|.=. |+-.......++.+++=.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~~ 76 (91)
T PRK14436 9 RIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGWAHQGPPLARVTRVEV 76 (91)
T ss_pred EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHhhCCCceEEEEEEE
Confidence 4567666 7888999999999999999998877777899999986 346666665543545555665553
No 27
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=88.92 E-value=0.55 Score=37.73 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=49.3
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 101 ERQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 101 ~~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
..+++.+.++.| .-|+|.+|... +-++.-+++.|..-+++.+++ ++.+..+|+|.+...-.+-++.+|
T Consensus 18 kmP~~~v~~eG~----~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~i----d~~~~lii~G~~~~~~i~~~L~~f 89 (125)
T PF01873_consen 18 KMPPPQVKIEGK----KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSI----DGKGRLIINGRFSSKQIQDLLDKF 89 (125)
T ss_dssp CCCT--EEEETS----TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEE----ETTTEEEEESSSSCCHHHHHHHHH
T ss_pred ecCCCeEEEEcc----ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEE----CCCCEEEEEEecCHHHHHHHHHHH
Confidence 456677776644 35889998863 458999999999999999999 344899999997665544444433
No 28
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=88.60 E-value=1.1 Score=38.49 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=49.2
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
.++..+.++ |+| |+|.+|... .-+..-+.|.|..-+++.+++ .++..+|+|.+...-.+-++..|
T Consensus 26 ~p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~-----~~~~~ii~G~~~~~~i~~~l~~y 94 (201)
T PRK12336 26 IPEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKI-----EGGRAVFNGKFTEEDIQAAIDAY 94 (201)
T ss_pred cCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCccee-----cCCEEEEEeeeCHHHHHHHHHHH
Confidence 455555555 333 999998763 567999999999999999999 34689999998777666555554
No 29
>PRK14422 acylphosphatase; Provisional
Probab=88.52 E-value=2.6 Score=31.91 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=50.5
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
-.|+|.-. |+-..-+...++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+-|...|+-++
T Consensus 10 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gp~~a~V~~i~ 77 (93)
T PRK14422 10 AWVHGHVQ-GVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQLLRGDDTPGRVDKVV 77 (93)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence 45677766 888999999999999999999887778789999998654 555655544463444455443
No 30
>PRK14438 acylphosphatase; Provisional
Probab=88.41 E-value=1.9 Score=32.38 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=51.0
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-.|+|.-. |+-.......++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++-
T Consensus 7 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~~ 75 (91)
T PRK14438 7 VTVKGLVQ-GVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDWCHHGPSRARVSGVIV 75 (91)
T ss_pred EEEEEecC-CcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEEEE
Confidence 45677766 7888999999999999999998777777899999985 446666655543444455655443
No 31
>PRK14429 acylphosphatase; Provisional
Probab=88.40 E-value=1.9 Score=32.31 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=50.1
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC 190 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~ 190 (209)
.|+|.-. |+-.......++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+-|...|+-++..
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~i~~~ 75 (90)
T PRK14429 7 KLTGKVQ-GVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIAWCEVGVPCTEVLRVTVE 75 (90)
T ss_pred EEEEeec-CeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEEEE
Confidence 4566665 788888999999999999999877777789999998643 55555544446444456555444
No 32
>PRK14446 acylphosphatase; Provisional
Probab=88.39 E-value=1.6 Score=32.82 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=50.4
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEe
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFS 187 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~ 187 (209)
-.|+|.=. |+-..-+...++++++-.+.|...+++.-+|.+||+-. .|.+|+.....+=|...|+-+
T Consensus 6 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~l~~gP~~a~V~~v 72 (88)
T PRK14446 6 FVVSGVVQ-GVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAWLWQGPPAATVAAV 72 (88)
T ss_pred EEEEEecC-CeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEE
Confidence 34677766 78889999999999999999988888889999999853 566665554434455555543
No 33
>PRK14443 acylphosphatase; Provisional
Probab=88.18 E-value=2 Score=32.74 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=48.4
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC-CCcEEE
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI-SLSIFF 186 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp-~~~I~~ 186 (209)
-.|+|.-. |+-....+..++.+++-.|.|...+++.-+|.+||+-.. |.+|+.....+-| ...|+-
T Consensus 8 i~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~g~p~~a~V~~ 74 (93)
T PRK14443 8 LRVTGFVQ-GVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDAIKKGPSPGCRIEH 74 (93)
T ss_pred EEEEEeeC-CccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHHHhcCCCCcEEEEE
Confidence 34667666 788889999999999999999877888899999998433 5555554444654 444444
No 34
>PRK14428 acylphosphatase; Provisional
Probab=88.03 E-value=2.5 Score=32.42 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=51.2
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
-.|+|.-. |+-..-....++++++-.+.|...+++.-+|.+||+- +.|.+||.....+=|...|+-++
T Consensus 12 i~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l~~gP~~a~V~~v~ 79 (97)
T PRK14428 12 IVVTGLVQ-GVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQLAIGPRWSEVSHVA 79 (97)
T ss_pred EEEEEecC-CccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHHhhCCCccEEEEEE
Confidence 45677776 8888999999999999999998777787999999985 55666666655344445555443
No 35
>PRK14445 acylphosphatase; Provisional
Probab=87.88 E-value=2.1 Score=32.09 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=50.7
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-.|+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+=|...|+-++.
T Consensus 8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~gP~~a~V~~i~~ 76 (91)
T PRK14445 8 LIVSGLVQ-GVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQAERGPSRSSVTSIMV 76 (91)
T ss_pred EEEEEEEc-CcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEEEE
Confidence 35677766 788899999999999999999877777789999998633 6666655543333455655443
No 36
>PRK14433 acylphosphatase; Provisional
Probab=87.86 E-value=2.5 Score=31.57 Aligned_cols=67 Identities=9% Similarity=0.047 Sum_probs=49.7
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEe
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFS 187 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~ 187 (209)
-.|+|.-. |+-.......++.+++-.+.|...+++.-+|.+|||-. .|.+|+.....+=|...|+-+
T Consensus 5 i~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gP~~a~V~~i 71 (87)
T PRK14433 5 ALVSGRVQ-GVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWLRRGPRHARVEAV 71 (87)
T ss_pred EEEEEeee-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEE
Confidence 34567555 78888999999999999999987777778999999964 677777665534333444443
No 37
>PRK14452 acylphosphatase; Provisional
Probab=87.78 E-value=3.3 Score=32.37 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=50.4
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
-.|+|.-. |+-..-....++++++-.|.|...+++.-+|.+||+.. .|.+|+.-...+=|...|+-++
T Consensus 24 i~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~~~l~~gP~~A~V~~v~ 91 (107)
T PRK14452 24 FLIEGRVQ-GVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELRAWCERGPPGARVKRVD 91 (107)
T ss_pred EEEEEeec-CcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 56678777 88999999999999999999988877889999999964 5666643333344444554433
No 38
>PRK14442 acylphosphatase; Provisional
Probab=87.67 E-value=2.7 Score=31.60 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=50.7
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-.|+|.-. |+-..-....++++++-.+.|...+++.-+|.+||+.. .|.+|+.....+=|...|+-++.
T Consensus 8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~~ 76 (91)
T PRK14442 8 AYVGGRVQ-GVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERWLGRGPRHAEVSAVEV 76 (91)
T ss_pred EEEEEecC-CccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhhCCCCeEEEEEEE
Confidence 35677777 88889999999999999999988888889999999865 36666555442333344554443
No 39
>PRK14420 acylphosphatase; Provisional
Probab=87.56 E-value=2.7 Score=31.37 Aligned_cols=69 Identities=14% Similarity=0.008 Sum_probs=50.3
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-.|+|.-. |+-..-....++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+-|...|+-++.
T Consensus 6 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~p~~a~V~~i~~ 74 (91)
T PRK14420 6 IIVDGRVQ-GVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKGSPFSKVTDVHI 74 (91)
T ss_pred EEEEEeeC-CcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEEE
Confidence 34566665 7788888999999999999998877777899999984 666666665544645445555443
No 40
>PRK14427 acylphosphatase; Provisional
Probab=87.42 E-value=2.5 Score=32.06 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=49.9
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
-.|+|.=. |+-..-+.+.++.+++-.+.|...+++.-+|.+||+... |.+|+.....+=|...|+-++
T Consensus 10 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~-i~~f~~~l~~~p~~a~V~~i~ 77 (94)
T PRK14427 10 ARVFGVVQ-GVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQ-VEKLLDWLNSDRAPGRVERVD 77 (94)
T ss_pred EEEEEEeC-CcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHhhCCCCcEEEEEE
Confidence 34567666 788899999999999999999877777789999998743 666665554453344454443
No 41
>PRK14435 acylphosphatase; Provisional
Probab=87.40 E-value=2.7 Score=31.55 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=51.3
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC 190 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~ 190 (209)
-.|+|.-. |+-.......++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+=|...|+-++..
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~l~~gp~~a~V~~v~~~ 75 (90)
T PRK14435 6 IRVEGIVQ-GVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNEVAKGPPAAVVTNVSVE 75 (90)
T ss_pred EEEEEEeC-CcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 34577766 7888899999999999999998888888999999986 3466666555434444445544433
No 42
>PRK14423 acylphosphatase; Provisional
Probab=86.86 E-value=2.6 Score=31.74 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=50.6
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
.|+|.=. |+-..-....++.+++-.|.|...+++.-+|.+||+-. .|.+|+.....+-|...|+-++.
T Consensus 10 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 10 FVSGRVQ-GVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred EEEEecC-CeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEEE
Confidence 4567666 78889999999999999999977777778999999864 56666655544545555555543
No 43
>PRK14426 acylphosphatase; Provisional
Probab=86.42 E-value=3.6 Score=30.99 Aligned_cols=70 Identities=9% Similarity=-0.051 Sum_probs=50.7
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCC-CcEEEeccc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVIS-LSIFFSFSC 190 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~-~~I~~~dk~ 190 (209)
-.|+|.-. |+-.......++.+++-.|.|...+++.-+|.+||+... |.+|+.....+.|+ ..|+-++..
T Consensus 8 ~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~g~P~~a~V~~i~~~ 78 (92)
T PRK14426 8 AWVYGRVQ-GVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQ-VEKLMEWLKEGGPRSARVDRVLTE 78 (92)
T ss_pred EEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHH-HHHHHHHHhcCCCCCeEEEEEEEE
Confidence 34567666 788889999999999999999877878889999999533 55555554446444 446655544
No 44
>PRK14421 acylphosphatase; Provisional
Probab=85.85 E-value=3.5 Score=31.74 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=50.1
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC 190 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~ 190 (209)
-.|+|.-. |+-..-....++.+++-.|.|...+++.-+|.+||+-.. |.+|+.....+=|...|+-++..
T Consensus 8 ~~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gP~~a~V~~v~~~ 77 (99)
T PRK14421 8 VTIRGRVQ-GVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIARCRRGPSAARVDAVEDE 77 (99)
T ss_pred EEEEEeEc-CccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHHHHhCCCCcEEEEEEEE
Confidence 34667666 788899999999999999999777777789999998643 55555444334345555554443
No 45
>PRK14424 acylphosphatase; Provisional
Probab=85.76 E-value=5.4 Score=30.38 Aligned_cols=84 Identities=13% Similarity=0.019 Sum_probs=55.3
Q ss_pred EEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecccccchhhh
Q 028409 118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCI 197 (209)
Q Consensus 118 VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~ 197 (209)
--+|+|--. |+-.......++.+++-.+.|...+++.-+|.+||+-.. |.+|+.....+=|...|.-+ -..|.-
T Consensus 10 ~~~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~~l~~gp~~a~V~~v----~~~~~~ 83 (94)
T PRK14424 10 YVRVRGVVQ-GVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLAWLRHGPPAARVTEV----TFEERR 83 (94)
T ss_pred EEEEEEeec-CCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEE----EEEEeC
Confidence 445677666 788899999999999999999877777789999998643 65555554423233333333 333444
Q ss_pred ccccCCCccc
Q 028409 198 WKTLKEDFVP 207 (209)
Q Consensus 198 ~~~~~~~~~~ 207 (209)
|..--.+|-|
T Consensus 84 ~~~~~~~F~~ 93 (94)
T PRK14424 84 TEKRFERFQQ 93 (94)
T ss_pred CCCCCCCcEE
Confidence 5443345543
No 46
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=85.67 E-value=3 Score=30.83 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=50.2
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-+|+|.-. |+-....++.++.+++-.+.|...+++.-+|++||+- +.|.+|+.....+-|...|.-++.
T Consensus 8 i~v~G~VQ-GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~l~~g~p~a~V~~i~~ 76 (91)
T PF00708_consen 8 IIVSGRVQ-GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKWLKKGPPPARVDEIEV 76 (91)
T ss_dssp EEEEEETS-SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred EEEEEEEC-cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHHHHhCCCCcEEEEEEE
Confidence 46788666 8999999999999999999998877777899999964 335555544444666666665544
No 47
>PRK14447 acylphosphatase; Provisional
Probab=85.47 E-value=3.9 Score=31.02 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=49.3
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCC-CceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~-~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-.|+|.-. |+-..-+.+.++.+++-.+.|...+++ .-+|.+||+ .+.|.+|+.....+=|...|+-++.
T Consensus 8 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~l~~gp~~a~V~~v~~ 77 (95)
T PRK14447 8 LFIRGKVQ-GVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEWARVGPPGARVEDVEV 77 (95)
T ss_pred EEEEEecC-CccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHHHhhCCCCeEEEEEEE
Confidence 45678777 889999999999999999999877777 479999998 4555555543322434444555443
No 48
>PRK14450 acylphosphatase; Provisional
Probab=85.40 E-value=5.1 Score=29.99 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=49.5
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCC-ceEEEcCC--chhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEK-EQIDVQGD--ISYDIVEFITDTWPAVISLSIFFSFSC 190 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~-~eI~IQGD--~~~~i~~~L~~~~~gIp~~~I~~~dk~ 190 (209)
-+|+|.=. |+-.......++.+++-.|.|...+++. -+|.+||+ ..+...++|. .+=|...|+-++..
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~---~gp~~a~V~~v~~~ 76 (91)
T PRK14450 6 AIVKGKVQ-GVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR---SGPPRAEVKEVETS 76 (91)
T ss_pred EEEEEEec-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh---hCCCCcEEEEEEEE
Confidence 35667666 7888999999999999999997777774 79999998 4555555553 25444556655543
No 49
>PRK14432 acylphosphatase; Provisional
Probab=84.69 E-value=4.6 Score=30.57 Aligned_cols=69 Identities=10% Similarity=-0.060 Sum_probs=50.1
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEc-CCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQ-GDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQ-GD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-+|+|.-. |+-.......++.+++-.|.|...+++.-+|.+| ||- +.|.+|+.....|=|...|+-++.
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~gp~~a~V~~v~~ 75 (93)
T PRK14432 6 YFISGKVQ-GVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNGNKYSNIENIEK 75 (93)
T ss_pred EEEEEeec-CeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhCCCccEEEEEEE
Confidence 35667666 7888889999999999999998777787899998 985 556666655544634445554443
No 50
>PRK14448 acylphosphatase; Provisional
Probab=84.14 E-value=5.9 Score=29.70 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=48.9
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEe
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFS 187 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~ 187 (209)
-.|+|.-. |+-.....+.++.+++-.+.|...+++.-+|.+||+-. .|.+|+.....+=|...|+-+
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~l~~gp~~a~V~~v 72 (90)
T PRK14448 6 FIVYGHVQ-GVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFRDWLQHGPPTAVVCNV 72 (90)
T ss_pred EEEEEeec-CcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHHhCCCceEEEEE
Confidence 45677766 88899999999999999999987777778999999863 355555544423333444443
No 51
>PRK14439 acylphosphatase; Provisional
Probab=83.67 E-value=4.8 Score=33.98 Aligned_cols=71 Identities=14% Similarity=0.010 Sum_probs=51.2
Q ss_pred EEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCC-CCcEEEeccc
Q 028409 118 ITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVI-SLSIFFSFSC 190 (209)
Q Consensus 118 VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp-~~~I~~~dk~ 190 (209)
--.|+|.-+ |+-.......++.+++-.|.|...+++.-+|++||+-.. |.+|+.....+-| ...|+-++..
T Consensus 78 ~i~VsGrVQ-GVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~-Ie~Fi~~L~~~gPp~A~Ve~I~v~ 149 (163)
T PRK14439 78 IAWVYGRVQ-GVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQ-VEKLMQWLKSGGPRSARVERVLSE 149 (163)
T ss_pred EEEEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHhhCCCCCeEEEEEEEE
Confidence 345677777 888999999999999999999777778889999998643 5555544432234 4556655544
No 52
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=83.33 E-value=1 Score=32.39 Aligned_cols=29 Identities=31% Similarity=0.661 Sum_probs=22.5
Q ss_pred eeEEEcCCCCCCccccccCCChhhhHHHHHHhCCCc
Q 028409 8 VRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPEL 43 (209)
Q Consensus 8 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~p~l 43 (209)
++|.||.-|+ |.+-+..-++=|...+|+.
T Consensus 1 V~IeyC~~C~-------y~~Ra~~l~q~L~~~Fp~~ 29 (72)
T TIGR02174 1 VEIEYCGSCG-------YKPRAAWLKQELLEEFPDL 29 (72)
T ss_pred CEEEECCCCC-------ChHHHHHHHHHHHHHCCCC
Confidence 5789999998 6777777777777777764
No 53
>PRK14441 acylphosphatase; Provisional
Probab=83.09 E-value=5.6 Score=30.02 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=50.1
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFSC 190 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk~ 190 (209)
-.|+|.=. |+-.......++++++-.+.|...+++.-+|.+||+-. .|..|+.....+=|...|+-++..
T Consensus 9 i~v~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~~~ 78 (93)
T PRK14441 9 IVVSGRVQ-GVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVRWCHAGPPAARVDRVEVE 78 (93)
T ss_pred EEEEEecC-CccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEEEE
Confidence 35577776 88889999999999999999987777778999999833 455554443324345556665544
No 54
>PRK14430 acylphosphatase; Provisional
Probab=76.05 E-value=13 Score=28.08 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=46.2
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
-.|+|.=. |+-..-....++.+++-.+.|...+++.-+|.+||+- +.|.+|+.....+=|...|+-++
T Consensus 8 i~v~G~VQ-GVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 75 (92)
T PRK14430 8 LVAHGRVQ-GVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTV-RQLEALRAWMEAGPPAAQVTKVE 75 (92)
T ss_pred EEEEEeec-ceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCceEEEEEE
Confidence 34556555 6777888999999999999998777777899999974 44444443332233444554444
No 55
>PRK14431 acylphosphatase; Provisional
Probab=74.66 E-value=14 Score=27.66 Aligned_cols=67 Identities=18% Similarity=0.130 Sum_probs=47.3
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC-CCCcEEEec
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV-ISLSIFFSF 188 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI-p~~~I~~~d 188 (209)
-.|+|.=. |+-..-..+.++++++-.+.|...++ +-+|.+||+- +.|.+|+.....|- |...|+-++
T Consensus 6 ~~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~-~~l~~f~~~l~~g~p~~a~V~~v~ 73 (89)
T PRK14431 6 LQVFGRVQ-GVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDD-ADLERFIQGVIEGASPASNVTSYQ 73 (89)
T ss_pred EEEEEecC-CeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCH-HHHHHHHHHHhcCCCCcEEEEEEE
Confidence 34567666 78888999999999999999977666 4899999975 23555554444365 355555443
No 56
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=72.45 E-value=3.6 Score=29.57 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=22.0
Q ss_pred eeEEEcCCCCCCccccccCCChhhhHHHHHHhCCCch
Q 028409 8 VRVLYCSICSLPAEYCEFGPDFEKCKPWLIKNAPELY 44 (209)
Q Consensus 8 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~p~l~ 44 (209)
+.|.||..|++=+ .+...++-|...+|+.+
T Consensus 3 V~IeYC~~C~~~~-------~a~~l~~~l~~~fp~~~ 32 (76)
T PF10262_consen 3 VTIEYCTSCGYRP-------RALELAQELLQTFPDRI 32 (76)
T ss_dssp EEEEEETTTTCHH-------HHHHHHHHHHHHSTTTC
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHHHHCCCcc
Confidence 7899999988544 36677777777777633
No 57
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=62.69 E-value=47 Score=25.27 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=49.2
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEE
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIF 185 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~ 185 (209)
-.|+|--+ |+......+..+.+++-.|-|-..+++.-+|..||+-.. +..|+.....|-|.-.|+
T Consensus 8 ~~V~GrVQ-GVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~l~~g~~~a~V~ 72 (92)
T COG1254 8 ARVYGRVQ-GVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEWLRKGPPAAKVE 72 (92)
T ss_pred EEEEEEec-cccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHHHHhCCCceEEE
Confidence 34566555 788899999999999999999888888899999999777 766665544463333333
No 58
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=50.59 E-value=29 Score=29.32 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=44.5
Q ss_pred CeeEEEEeccCCCCCCHHHHHHHHhh-hcccceeeeeCCCCCceEEEcCCchhHH---HHHHhh-hCCCCCCCcE
Q 028409 115 RKCITIVKGLDLFGVKLSDASKKLGK-KFATGASVVKGPTEKEQIDVQGDISYDI---VEFITD-TWPAVISLSI 184 (209)
Q Consensus 115 rK~VT~V~GLe~fgidlk~lAK~lkk-kfAcg~SV~k~~~~~~eI~IQGD~~~~i---~~~L~~-~~~gIp~~~I 184 (209)
|..|++..|++.- ..+++.|.++- ++-.-+++ -+++|-|.|--+|++ ..+|.+ .| ++|..+.
T Consensus 91 rq~i~lk~GI~~e--~AKkIvK~IKd~klKVqa~I-----QGd~vRVtgKkrDDLQ~viallk~~d~-~~pLQF~ 157 (161)
T PRK05412 91 KQEVKLKQGIDQE--LAKKIVKLIKDSKLKVQAQI-----QGDQVRVTGKKRDDLQAVIALLRKADL-GQPLQFN 157 (161)
T ss_pred EEEEehhhccCHH--HHHHHHHHHHhcCCceeEEe-----cCcEEEEecCCHhHHHHHHHHHHhccC-CCCceec
Confidence 4668888888873 57888888875 66677787 678999999777754 455554 45 6776654
No 59
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=42.53 E-value=89 Score=22.08 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhh
Q 028409 127 FGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 174 (209)
Q Consensus 127 fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~ 174 (209)
..+|.+.+...|.=....|..| +|.+.|+..+++.+-|.+
T Consensus 36 ~~vdakSil~i~~L~~~~G~~i--------~i~~~G~de~~al~~l~~ 75 (77)
T cd00367 36 RKANAKSILGLMSLGAKQGDEI--------TLSAEGEDAEEALEALAE 75 (77)
T ss_pred EEEcHHhHHHHHHcCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 3578888888888888888887 888899988888877754
No 60
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=39.83 E-value=37 Score=28.66 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=36.5
Q ss_pred CeeEEEEeccCCCCCCHHHHHHHHhh-hcccceeeeeCCCCCceEEEcCCchhHHHHH---Hhh-hCCCCCCCcE
Q 028409 115 RKCITIVKGLDLFGVKLSDASKKLGK-KFATGASVVKGPTEKEQIDVQGDISYDIVEF---ITD-TWPAVISLSI 184 (209)
Q Consensus 115 rK~VT~V~GLe~fgidlk~lAK~lkk-kfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~---L~~-~~~gIp~~~I 184 (209)
|..||+..|++.- ..+++.|.++. ++-.-+++ -+++|-|.|--+|++-+. |.+ .| ++|..+.
T Consensus 91 rq~i~lk~GI~~d--~AKkIvK~IKd~klKVqa~I-----Qgd~vRVtgKkrDDLQ~viallk~~d~-~~pLQF~ 157 (160)
T PF04461_consen 91 RQVIKLKQGIDQD--TAKKIVKLIKDSKLKVQAQI-----QGDQVRVTGKKRDDLQEVIALLKEQDL-GIPLQFN 157 (160)
T ss_dssp EEEEEE--S--HH--HHHHHHHHHHHH--SEEEEE-----ETTEEEEEES-HHHHHHHHHHHHHS---SS--EEE
T ss_pred EEEEEeecccCHH--HHHHHHHHHHhcCCceeEEe-----cCcEEEEecCCHHHHHHHHHHHHcccC-CCCceec
Confidence 4678888888873 56777777765 66677787 578999999888887664 433 34 6776554
No 61
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=38.55 E-value=13 Score=23.49 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=5.6
Q ss_pred EcCCCCCCccc
Q 028409 12 YCSICSLPAEY 22 (209)
Q Consensus 12 YC~vCs~P~EY 22 (209)
||+.|+-|.++
T Consensus 2 fC~~CG~~l~~ 12 (34)
T PF14803_consen 2 FCPQCGGPLER 12 (34)
T ss_dssp B-TTT--B-EE
T ss_pred ccccccChhhh
Confidence 89999988764
No 62
>PRK10721 hypothetical protein; Provisional
Probab=36.72 E-value=27 Score=25.40 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=25.8
Q ss_pred chhHHHHHHhhhCCCCCCCcEEEecccccchhhh
Q 028409 164 ISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCI 197 (209)
Q Consensus 164 ~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~ 197 (209)
...+|...|.++||++++..|.+.| ||+|-+
T Consensus 7 D~~dIA~~L~e~~Pd~DP~~vrFtD---L~~wV~ 37 (66)
T PRK10721 7 DSREIGEALYDAYPDLDPKTVRFTD---MHQWIC 37 (66)
T ss_pred CHHHHHHHHHHHCCCCCCCEeehHH---HHHHHH
Confidence 3568888999999999999999876 788854
No 63
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=35.97 E-value=56 Score=27.22 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=37.6
Q ss_pred EEEEeccCC----CCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHH
Q 028409 118 ITIVKGLDL----FGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVE 170 (209)
Q Consensus 118 VT~V~GLe~----fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~ 170 (209)
.|++.++.. -+-|++-+++.|++-.++.+++ +++...++||-+.+....
T Consensus 43 ~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~----d~~~rlvl~g~f~~~~i~ 95 (151)
T COG1601 43 RTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSI----DGKGRLVLQGKFSDSEIV 95 (151)
T ss_pred hhHHHhHHHHHHHhcCCHHHHHHHHHHHhcccccc----CCcceEEEEecccHHHHH
Confidence 466666542 3568999999999999999999 455899999987665444
No 64
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=35.93 E-value=27 Score=25.19 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=25.3
Q ss_pred chhHHHHHHhhhCCCCCCCcEEEecccccchhhh
Q 028409 164 ISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCI 197 (209)
Q Consensus 164 ~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~ 197 (209)
...+|+..|.++||++.+..|.+.| ||+|-+
T Consensus 4 D~~eIA~~L~e~~pd~dp~~vrFtd---L~~wV~ 34 (63)
T TIGR03412 4 DSQEIAIALAEAHPDVDPKTVRFTD---LHQWVL 34 (63)
T ss_pred CHHHHHHHHHHHCCCCCcceeeHHH---HHHHHH
Confidence 3568899999999999998888865 788854
No 65
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=35.08 E-value=1.4e+02 Score=22.28 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 129 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 129 idlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
+|.+.+...++=...+|..| +|.+.|+..++..+-|.+.+
T Consensus 44 ~~akSil~lm~Lg~~~G~~i--------~v~~~G~De~~A~~~l~~~~ 83 (90)
T PRK10897 44 AEANSVIALLMLDSAKGRQI--------EVEATGPQEEEALAAVIALF 83 (90)
T ss_pred EchHhHHHHHHhCCCCCCEE--------EEEEECcCHHHHHHHHHHHH
Confidence 57788888888888888887 89999998888777776543
No 66
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=34.91 E-value=17 Score=26.71 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=15.7
Q ss_pred hHHHHHHhCCCchhHHHh
Q 028409 32 CKPWLIKNAPELYPDLLK 49 (209)
Q Consensus 32 Ck~WL~~n~p~l~~~l~~ 49 (209)
=++||.+|.|.+.+++.-
T Consensus 47 LkeWLD~nLP~lVErlVr 64 (73)
T PF10691_consen 47 LKEWLDENLPGLVERLVR 64 (73)
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 478999999999998864
No 67
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=33.35 E-value=20 Score=34.78 Aligned_cols=33 Identities=30% Similarity=0.956 Sum_probs=24.3
Q ss_pred EcCCCCCCccccc-----------cCCC-----hhhhHHHHHHhCCCchh
Q 028409 12 YCSICSLPAEYCE-----------FGPD-----FEKCKPWLIKNAPELYP 45 (209)
Q Consensus 12 YC~vCs~P~EYCE-----------fg~~-----~~kCk~WL~~n~p~l~~ 45 (209)
-|.+|+||..+|| |.+. -+-| .|.-++.|+-|.
T Consensus 382 ~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~~C-~~~F~~ePerY~ 430 (465)
T cd01057 382 LCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGC-EWIFEQEPERYA 430 (465)
T ss_pred CCCCCCCeeccccCcccccceEEEECCEEEEecCHHH-HHHHHHCHHHHh
Confidence 7999999999873 3221 2568 677788898885
No 68
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=32.78 E-value=68 Score=23.09 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhh
Q 028409 129 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 174 (209)
Q Consensus 129 idlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~ 174 (209)
+|.+.+...++=...+|..+ +|.++|+..+++.+-|.+
T Consensus 42 vdakSil~l~~L~~~~G~~i--------~i~~~G~de~~a~~~i~~ 79 (84)
T PF00381_consen 42 VDAKSILGLMSLGAKKGDEI--------EIEAEGEDEEEALEAIAE 79 (84)
T ss_dssp EETTSHHHHHHHTBSTTEEE--------EEEEESTTHHHHHHHHHH
T ss_pred EecCCHHHHhhhhcCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 34445555555444455554 788899998888887765
No 69
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=51 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=24.7
Q ss_pred EcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 160 VQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 160 IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
++|---+.|..||.+.| ++|.+.|+++-
T Consensus 47 ~~GKAN~~li~~Lak~~-~v~kS~V~ivs 74 (102)
T COG1872 47 VDGKANEELIKFLAKTF-GVPKSSVEIVS 74 (102)
T ss_pred CCcchhHHHHHHHHHHh-CCCcccEEEEe
Confidence 56888899999999999 99999999853
No 70
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=29.75 E-value=53 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=23.9
Q ss_pred chhHHHHHHhhhCCCCCCCcEEEecccccchhh
Q 028409 164 ISYDIVEFITDTWPAVISLSIFFSFSCVLHKWC 196 (209)
Q Consensus 164 ~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~ 196 (209)
+...|.++|.+.+ |||++.|++.--.+ +-|.
T Consensus 77 ~s~~i~~~l~~~L-gIp~dRiYI~f~d~-~~~G 107 (113)
T PTZ00450 77 MTPRITAAITKEC-GIPAERIYVFYYST-KHCG 107 (113)
T ss_pred HHHHHHHHHHHHc-CCCcccEEEEEEcH-HHcc
Confidence 5678999999999 99999998854444 4453
No 71
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=27.85 E-value=1.6e+02 Score=21.83 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 129 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 129 idlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
+|.+.+...+.=...+|..| +|.+.|+..+++.+-|.+.+
T Consensus 42 vdakSil~lm~Lg~~~G~~v--------~i~a~G~De~~Al~~l~~~l 81 (88)
T PRK13780 42 VNLKSIMGVMSLGVGQGADI--------TISAEGADAADAIAAIEETM 81 (88)
T ss_pred EechhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHHHH
Confidence 56777888888778888887 89999998888777665543
No 72
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=26.91 E-value=93 Score=24.05 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=18.9
Q ss_pred CCCCcEEEEEEeecCCeeEEEE
Q 028409 100 KERQEVVIEKVVRNKRKCITIV 121 (209)
Q Consensus 100 ~~~~~V~I~~~~R~grK~VT~V 121 (209)
.....+.+....|=++|+||+|
T Consensus 74 ik~~v~al~~T~Ryk~KyVT~v 95 (100)
T PF04739_consen 74 IKDGVLALGTTHRYKSKYVTTV 95 (100)
T ss_dssp EBTTEEEEEEEEEETTEEEEEE
T ss_pred cCCCeEEEEEEEEecceEEEEE
Confidence 3456888999999999999998
No 73
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=26.30 E-value=1.1e+02 Score=23.11 Aligned_cols=42 Identities=21% Similarity=0.473 Sum_probs=30.4
Q ss_pred eEEEcCCch---hHHHHHHhhhCCCCCCCcEEEecccccchhhhccccCCCcccC
Q 028409 157 QIDVQGDIS---YDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPL 208 (209)
Q Consensus 157 eI~IQGD~~---~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~~~~~~~~~~~~ 208 (209)
.+.|..+.. +.+.+.+.+.|+.+....+.+ -|+|-+||.|++
T Consensus 18 Rf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftl----------ky~DeeGDlvtI 62 (87)
T cd06402 18 RFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQL----------FWKDEEGDLVAF 62 (87)
T ss_pred EEEecCCCCcCHHHHHHHHHHHccccCCCcEEE----------EEECCCCCEEee
Confidence 345555554 778888888887776666655 478999999876
No 74
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=25.53 E-value=13 Score=23.75 Aligned_cols=17 Identities=35% Similarity=1.169 Sum_probs=6.1
Q ss_pred CCccccccCCChhhhHHHHHHhC
Q 028409 18 LPAEYCEFGPDFEKCKPWLIKNA 40 (209)
Q Consensus 18 ~P~EYCEfg~~~~kCk~WL~~n~ 40 (209)
||--||+| |+-||..+.
T Consensus 1 m~ryyCdy------C~~~~~~d~ 17 (38)
T PF06220_consen 1 MPRYYCDY------CKKYLTHDS 17 (38)
T ss_dssp --S-B-TT------T--B-S--S
T ss_pred CcCeeccc------ccceecCCC
Confidence 67789998 777885443
No 75
>PF04384 Fe-S_assembly: Iron-sulphur cluster assembly; InterPro: IPR007479 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents IscX proteins (also known as hypothetical protein YfhJ) that are part of the ISC system. IscX is active as a monomer. The structure of YfhJ is an orthogonal alpha-bundle []. YfhJ is a small acidic protein that binds IscS, and contains a modified winged helix motif that is usually found in DNA-binding proteins []. YfhJ/IscX can bind Fe, and may function as an Fe donor in the assembly of FeS clusters ; GO: 0016226 iron-sulfur cluster assembly; PDB: 2BZT_A 1UJ8_A.
Probab=24.15 E-value=50 Score=23.84 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=22.6
Q ss_pred CchhHHHHHHhhhCCCCCCCcEEEecccccchhhh
Q 028409 163 DISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCI 197 (209)
Q Consensus 163 D~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~ 197 (209)
....+|+..|.++||.+.+..|.+.+ ||+|-+
T Consensus 4 ~D~~eIA~~L~e~~pd~DP~~vrFtd---L~~wv~ 35 (64)
T PF04384_consen 4 TDSEEIAIELYEKYPDVDPLTVRFTD---LHEWVL 35 (64)
T ss_dssp T-HHHHHHHHHHHSTTS-CCC--HHH---HHHHHH
T ss_pred cCHHHHHHHHHHHCCCCCcCeecHHH---HHHHHH
Confidence 34678999999999999998887755 788854
No 76
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=23.92 E-value=55 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=20.7
Q ss_pred ChhhhHHHHHHhCCCchhHHHhhhh
Q 028409 28 DFEKCKPWLIKNAPELYPDLLKEAN 52 (209)
Q Consensus 28 ~~~kCk~WL~~n~p~l~~~l~~~~~ 52 (209)
.+++=..|-.+||||+++.|-+.++
T Consensus 10 awrrId~W~aeh~pdl~~~l~pgat 34 (191)
T COG4282 10 AWRRIDTWVAEHHPDLLPFLRPGAT 34 (191)
T ss_pred HHHHHHHHHHhcCcccccccCCCcc
Confidence 4567789999999999999987544
No 77
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.82 E-value=38 Score=31.95 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=22.9
Q ss_pred CeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCC
Q 028409 115 RKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPT 153 (209)
Q Consensus 115 rK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~ 153 (209)
+|.|.+ .||-. |--+|=+++|.|+.-.++.....
T Consensus 182 G~~vgI-~GlGG----LGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 182 GKWVGI-VGLGG----LGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred CcEEEE-ecCcc----cchHHHHHHHHhCcEEEEEeCCc
Confidence 355543 35543 66788888888888888877654
No 78
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.81 E-value=1.3e+02 Score=29.46 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=46.3
Q ss_pred CCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeC----------------------------CCCCceEEEcCCch
Q 028409 114 KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKG----------------------------PTEKEQIDVQGDIS 165 (209)
Q Consensus 114 grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~----------------------------~~~~~eI~IQGD~~ 165 (209)
.+..|-+|-|++.|.-|+.++...|. .|+.-..+... +...--|.+|.-..
T Consensus 219 ~~~~VNii~g~~~~~gd~~eikrlL~-~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~~ 297 (515)
T TIGR01286 219 SNGKINIIPGFETYIGNFREIKRILS-LMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYTL 297 (515)
T ss_pred CCCeEEEECCCCCCchhHHHHHHHHH-HcCCCeEEccCccccccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhhh
Confidence 35669999999888778888887776 44443332110 01123688888788
Q ss_pred hHHHHHHhhhCCCCCC
Q 028409 166 YDIVEFITDTWPAVIS 181 (209)
Q Consensus 166 ~~i~~~L~~~~~gIp~ 181 (209)
....++|.++| |+|.
T Consensus 298 ~~~a~~l~~~~-g~p~ 312 (515)
T TIGR01286 298 RKTKEYIEKTW-KQET 312 (515)
T ss_pred HHHHHHHHHHh-CCCc
Confidence 88999999999 8875
No 79
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=23.64 E-value=99 Score=22.61 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.6
Q ss_pred CCchhHHHHHHhhhCCCCCCCcEEEe
Q 028409 162 GDISYDIVEFITDTWPAVISLSIFFS 187 (209)
Q Consensus 162 GD~~~~i~~~L~~~~~gIp~~~I~~~ 187 (209)
|---+.+.+||.+.| +||.+.|+++
T Consensus 39 GkAN~ali~~La~~l-~v~ks~i~i~ 63 (77)
T PF02594_consen 39 GKANKALIRFLAKAL-GVPKSDIEIV 63 (77)
T ss_dssp CCHHHHHHHHHHHHC-T--TTCEEEC
T ss_pred ChhHHHHHHHHHHHh-CCCcccEEEE
Confidence 667789999999999 9999999985
No 80
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.72 E-value=68 Score=23.03 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=24.3
Q ss_pred hhHHHHHHhhhCCCCCCCcEEEecccccchhh
Q 028409 165 SYDIVEFITDTWPAVISLSIFFSFSCVLHKWC 196 (209)
Q Consensus 165 ~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~ 196 (209)
..+|.+-|-+.||.+++..+.+.| ||+|-
T Consensus 6 ~~~Iae~Lyd~~pdvDPktvrFtd---lh~wi 34 (64)
T COG2975 6 SQEIAEALYDAYPDVDPKTVRFTD---LHQWI 34 (64)
T ss_pred HHHHHHHHHhcCCCCCcceeehhh---HHHHH
Confidence 467888899999999999988876 78884
No 81
>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=21.67 E-value=46 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=11.0
Q ss_pred CCceeEEEcCCCCC
Q 028409 5 PQPVRVLYCSICSL 18 (209)
Q Consensus 5 ~~p~~V~YC~vCs~ 18 (209)
.+|+.+.+|..|++
T Consensus 35 ~~pL~l~~C~~Cgl 48 (62)
T PF08421_consen 35 RYPLDLYVCEDCGL 48 (62)
T ss_dssp EEEEEEEEETTT--
T ss_pred EECCEEEECCCCCc
Confidence 47999999999996
No 82
>PRK01343 zinc-binding protein; Provisional
Probab=21.47 E-value=66 Score=22.68 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=21.7
Q ss_pred eeEEEcCCCCCCccccccCCCh-hhhH-----HHHHHhC
Q 028409 8 VRVLYCSICSLPAEYCEFGPDF-EKCK-----PWLIKNA 40 (209)
Q Consensus 8 ~~V~YC~vCs~P~EYCEfg~~~-~kCk-----~WL~~n~ 40 (209)
+...-|++|+=|... +|.|-- ++|+ .||.+.+
T Consensus 7 ~p~~~CP~C~k~~~~-~~rPFCS~RC~~iDLg~W~~e~Y 44 (57)
T PRK01343 7 RPTRPCPECGKPSTR-EAYPFCSERCRDIDLNRWLSGSY 44 (57)
T ss_pred CCCCcCCCCCCcCcC-CCCcccCHHHhhhhHHHHhCCCc
Confidence 345679999999875 565543 5887 5775533
No 83
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.22 E-value=97 Score=23.60 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=18.9
Q ss_pred chhHHHHHHhhhCCCCCCCcEEEe
Q 028409 164 ISYDIVEFITDTWPAVISLSIFFS 187 (209)
Q Consensus 164 ~~~~i~~~L~~~~~gIp~~~I~~~ 187 (209)
....|.++|.+.+ |||++.|.+.
T Consensus 77 l~~~i~~~l~~~l-gi~~~rv~I~ 99 (116)
T PTZ00397 77 IAAAITKILASHL-KVKSERVYIE 99 (116)
T ss_pred HHHHHHHHHHHHh-CcCcccEEEE
Confidence 3456888888988 9999999984
No 84
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=21.04 E-value=2.6e+02 Score=20.17 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=28.0
Q ss_pred CCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhh
Q 028409 129 VKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITD 174 (209)
Q Consensus 129 idlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~ 174 (209)
+|.+.+...|+=...+|..| +|.+.|+..+++.+-|.+
T Consensus 42 ~dakSil~ll~Lg~~~G~~i--------~i~~~G~de~~a~~~l~~ 79 (82)
T TIGR01003 42 VNAKSIMGIMMLGAGQGTEV--------TVSADGEDEAEALEALAK 79 (82)
T ss_pred EehHhHHHHHhcCCCCCCEE--------EEEEeCcCHHHHHHHHHH
Confidence 45666666666666666666 888899988888887765
No 85
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=21.01 E-value=39 Score=20.34 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=8.0
Q ss_pred EEcCCCCCCcccccc
Q 028409 11 LYCSICSLPAEYCEF 25 (209)
Q Consensus 11 ~YC~vCs~P~EYCEf 25 (209)
.||+.|+=|...=+-
T Consensus 4 rfC~~CG~~t~~~~~ 18 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPG 18 (32)
T ss_dssp SB-TTT--BEEE-SS
T ss_pred cccCcCCccccCCCC
Confidence 489999988875443
No 86
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=20.81 E-value=58 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEeccCCCCCCHHHHHHHHhhhc
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKF 142 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkf 142 (209)
.++|||.-.+|+..|.|-|++.|
T Consensus 3 s~tgle~s~fd~~ql~k~f~~tc 25 (105)
T PF11388_consen 3 SNTGLEKSNFDPAQLTKPFGKTC 25 (105)
T ss_pred cccccccccCCHHHhhhhhhccc
Confidence 46899999999999999999954
No 87
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.58 E-value=34 Score=25.83 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.0
Q ss_pred EcCCCCCCccc
Q 028409 12 YCSICSLPAEY 22 (209)
Q Consensus 12 YC~vCs~P~EY 22 (209)
-||+|.||.+-
T Consensus 22 ~CGiCRm~Fdg 32 (84)
T KOG1493|consen 22 TCGICRMPFDG 32 (84)
T ss_pred ccceEecccCC
Confidence 58888887664
No 88
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.28 E-value=2.1e+02 Score=18.93 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=20.0
Q ss_pred HHhhhcccceeeeeCCCCCceEEEcCCchhHHHHH
Q 028409 137 KLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 171 (209)
Q Consensus 137 ~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~ 171 (209)
.+...++|.-.+....+....|.|.|. .+.+...
T Consensus 24 ~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A 57 (62)
T cd02394 24 KIMEETGVKIRFPDPGSKSDTITITGP-KENVEKA 57 (62)
T ss_pred HHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHH
Confidence 344555555555333334689999999 4455443
Done!