Query 028409
Match_columns 209
No_of_seqs 188 out of 779
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 99.9 8.6E-25 2.9E-29 169.5 11.2 87 99-187 20-106 (108)
2 2xzm_F EIF1; ribosome, transla 99.9 9.4E-25 3.2E-29 167.7 11.2 84 101-187 15-99 (101)
3 2if1_A EIF1, SUI1; translation 99.9 2.8E-23 9.4E-28 165.1 6.4 85 100-187 39-124 (126)
4 1d1r_A Hypothetical 11.4 KD pr 99.8 9.6E-22 3.3E-26 154.3 4.7 80 101-188 29-110 (116)
5 2d74_B Translation initiation 90.1 0.3 1E-05 39.3 4.3 65 102-176 32-100 (148)
6 2fhm_A Probable acylphosphatas 89.9 1.3 4.3E-05 32.1 7.3 68 120-189 7-74 (91)
7 1nee_A EIF-2-beta, probable tr 88.5 0.25 8.5E-06 39.3 2.7 65 102-176 30-98 (138)
8 1gxu_A Hydrogenase maturation 87.7 3.1 0.00011 30.1 8.1 64 120-188 12-75 (91)
9 2e9h_A EIF-5, eukaryotic trans 87.6 0.31 1.1E-05 39.5 2.8 71 102-176 25-99 (157)
10 3trg_A Acylphosphatase; fatty 87.0 2.8 9.7E-05 30.8 7.6 67 120-188 17-83 (98)
11 2lxf_A Uncharacterized protein 86.7 1.5 5E-05 34.0 6.1 66 121-188 40-105 (121)
12 2bjd_A Acylphosphatase; hypert 85.1 3.7 0.00013 30.4 7.4 67 120-188 19-85 (101)
13 1ulr_A Putative acylphosphatas 84.8 3.6 0.00012 29.5 7.1 65 120-188 7-73 (88)
14 1w2i_A Acylphosphatase; hydrol 84.4 4 0.00014 29.5 7.2 67 120-188 9-75 (91)
15 2g2k_A EIF-5, eukaryotic trans 84.0 0.39 1.3E-05 39.5 1.7 71 101-176 17-92 (170)
16 2vh7_A Acylphosphatase-1; hydr 83.7 4.3 0.00015 29.7 7.2 66 120-188 13-80 (99)
17 1urr_A CG18505 protein; acylph 83.5 4.4 0.00015 29.8 7.2 67 120-189 16-84 (102)
18 1k8b_A EIF-2-beta, probable tr 81.8 1.1 3.6E-05 30.0 2.9 46 111-163 3-52 (52)
19 2gv1_A Probable acylphosphatas 77.8 4.4 0.00015 29.3 5.4 67 120-188 9-76 (92)
20 2fa8_A Hypothetical protein AT 73.7 1.4 4.9E-05 33.3 1.8 18 1-18 3-20 (105)
21 3dex_A SAV_2001; alpha-beta pr 67.3 2.2 7.7E-05 32.5 1.7 15 8-22 15-29 (107)
22 1aps_A Acylphosphatase; hydrol 66.8 5.5 0.00019 29.1 3.7 54 120-175 12-65 (98)
23 3cw2_K Translation initiation 65.0 0.17 5.7E-06 40.3 -5.3 57 114-176 39-99 (139)
24 2oka_A Hypothetical protein; P 62.5 3.3 0.00011 31.2 1.8 16 6-21 6-21 (104)
25 2npb_A Selenoprotein W; struct 61.9 2.4 8.2E-05 31.4 0.9 11 7-17 4-14 (96)
26 2ojl_A Hypothetical protein; B 55.1 4.6 0.00016 30.7 1.5 14 7-20 10-23 (108)
27 2p0g_A Selenoprotein W-related 54.0 4.9 0.00017 30.3 1.5 15 7-21 5-19 (105)
28 2ljk_A Protein C17ORF37; MIEN1 50.8 6.1 0.00021 30.3 1.6 12 7-18 26-37 (117)
29 1in0_A YAJQ protein, HI1034; a 42.5 23 0.00078 28.8 3.8 64 115-186 93-161 (163)
30 3vth_A Hydrogenase maturation 40.3 50 0.0017 32.5 6.6 67 119-189 14-82 (761)
31 3hyi_A Protein DUF199/WHIA; la 35.6 74 0.0025 27.8 6.3 60 130-190 107-168 (295)
32 3lqh_A Histone-lysine N-methyl 35.0 3.6 0.00012 33.7 -2.1 35 11-45 3-40 (183)
33 1wee_A PHD finger family prote 32.1 3.4 0.00012 28.4 -2.4 30 7-37 13-42 (72)
34 1we9_A PHD finger family prote 30.1 3.3 0.00011 27.6 -2.6 30 9-38 5-34 (64)
35 1wew_A DNA-binding family prot 28.3 5.2 0.00018 28.0 -2.0 28 5-36 11-42 (78)
36 2qrd_B SPCC1919.03C protein; A 24.4 82 0.0028 23.4 3.9 22 101-122 70-91 (97)
37 3o70_A PHD finger protein 13; 24.1 4.7 0.00016 27.7 -2.8 30 6-37 15-44 (68)
38 2kkc_A Sequestosome-1; P62, PB 24.0 61 0.0021 24.1 3.2 35 164-208 43-77 (102)
39 1uj8_A ORF3, hypothetical prot 24.0 18 0.00062 26.0 0.2 31 164-197 18-48 (77)
40 2v8q_B 5'-AMP-activated protei 23.8 80 0.0027 23.0 3.7 20 102-121 63-82 (87)
41 4g9i_A Hydrogenase maturation 23.1 57 0.002 32.1 3.7 56 119-175 6-63 (772)
42 1in0_A YAJQ protein, HI1034; a 22.0 1.4E+02 0.0046 24.2 5.1 55 131-186 19-81 (163)
43 3t4n_B SNF1 protein kinase sub 20.8 94 0.0032 23.7 3.7 20 102-121 86-105 (113)
44 1s3a_A NADH-ubiquinone oxidore 20.3 22 0.00075 25.9 0.1 26 18-43 22-47 (102)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.6e-25 Score=169.55 Aligned_cols=87 Identities=29% Similarity=0.363 Sum_probs=81.7
Q ss_pred cCCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCC
Q 028409 99 KKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178 (209)
Q Consensus 99 K~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~g 178 (209)
++..++|+|++++|+|||.||+|+||+. ++|+++|||.|+++||||+||.+.++++++|+|||||++.|.++|.++. .
T Consensus 20 ~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g-~ 97 (108)
T 2ogh_A 20 TATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQL-G 97 (108)
T ss_dssp CCCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHH-T
T ss_pred cCCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcC-C
Confidence 4667899999999999999999999997 9999999999999999999999988888999999999999999999986 7
Q ss_pred CCCCcEEEe
Q 028409 179 VISLSIFFS 187 (209)
Q Consensus 179 Ip~~~I~~~ 187 (209)
+|+++|++.
T Consensus 98 ~~~~~I~vh 106 (108)
T 2ogh_A 98 LQKKNIKIH 106 (108)
T ss_dssp SCCSCEEEC
T ss_pred CCHHHEEEc
Confidence 799999985
No 2
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=99.92 E-value=9.4e-25 Score=167.66 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC-
Q 028409 101 ERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV- 179 (209)
Q Consensus 101 ~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI- 179 (209)
..++|+|++++|+|||.||+|+||+ |++||++|||.|+++||||+||.+.|+++++|+|||||++.|.+||.++ |+
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~--G~~ 91 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE--GIA 91 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH--SSS
T ss_pred CCCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc--CCC
Confidence 3678999999999999999999999 9999999999999999999999999888889999999999999999986 55
Q ss_pred CCCcEEEe
Q 028409 180 ISLSIFFS 187 (209)
Q Consensus 180 p~~~I~~~ 187 (209)
|+++|++.
T Consensus 92 ~~~~I~vh 99 (101)
T 2xzm_F 92 AVDNITIH 99 (101)
T ss_dssp CTTTEEEC
T ss_pred CHHHEEEc
Confidence 99999874
No 3
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=99.88 E-value=2.8e-23 Score=165.15 Aligned_cols=85 Identities=26% Similarity=0.351 Sum_probs=79.4
Q ss_pred CCCCcEEEEEEeecCCeeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCC
Q 028409 100 KERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAV 179 (209)
Q Consensus 100 ~~~~~V~I~~~~R~grK~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gI 179 (209)
+..+.|+|++++|+|||.||+|+||+. ++||++|||.|+++||||+||.+.++++++|+||||+++.|.+||.++ |+
T Consensus 39 g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~--G~ 115 (126)
T 2if1_A 39 GTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI--GL 115 (126)
T ss_dssp SCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH--TS
T ss_pred CCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc--CC
Confidence 668899999999999999999999998 999999999999999999999988888899999999999999999986 55
Q ss_pred -CCCcEEEe
Q 028409 180 -ISLSIFFS 187 (209)
Q Consensus 180 -p~~~I~~~ 187 (209)
|+++|++.
T Consensus 116 ~~~~~I~vh 124 (126)
T 2if1_A 116 AKDDQLKVH 124 (126)
T ss_dssp SCTTTEECC
T ss_pred CChhhEEee
Confidence 79999863
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.84 E-value=9.6e-22 Score=154.30 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCcEEEEEEeecCC--eeEEEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCC
Q 028409 101 ERQEVVIEKVVRNKR--KCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPA 178 (209)
Q Consensus 101 ~~~~V~I~~~~R~gr--K~VT~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~g 178 (209)
..+.|+|+++ |+|| |.||+|+||+.|++||++|||.|+++||||+|| ++++|+|||||++.|.+||.++ |
T Consensus 29 ~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtV-----k~~~IeiQGD~r~~i~~~L~~~--G 100 (116)
T 1d1r_A 29 GDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV-----KDGVIEIQGDKRDLLKSLLEAK--G 100 (116)
T ss_dssp CCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC-----CSSCEEECSCCHHHHHHHHHHH--T
T ss_pred CCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEE-----cCCEEEEeCcHHHHHHHHHHHc--C
Confidence 3678999998 7666 999999999999999999999999999999999 5689999999999999999985 7
Q ss_pred CCCCcEEEec
Q 028409 179 VISLSIFFSF 188 (209)
Q Consensus 179 Ip~~~I~~~d 188 (209)
++.++|+.++
T Consensus 101 ~~vk~i~~~~ 110 (116)
T 1d1r_A 101 MKVKLAGGLE 110 (116)
T ss_dssp CEECCCCCCC
T ss_pred CCcceecccc
Confidence 7888877654
No 5
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=90.12 E-value=0.3 Score=39.28 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=48.2
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
.+++.+.++ |+| |+|.+|... .=++.-+.|.|..-+++.+++. ++..+|+|.+...-.+-++..|
T Consensus 32 mP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-----~~rlii~G~~~~~~i~~~L~~y 100 (148)
T 2d74_B 32 VPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-----GRRVVLQGRFTPYLIANKLKKY 100 (148)
T ss_dssp CCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-----TTEEEESSCCCHHHHHHHHHHH
T ss_pred cCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-----CCEEEEEeeeCHHHHHHHHHHH
Confidence 455555555 544 999988763 4578889999999999999993 6899999998766655444433
No 6
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=89.94 E-value=1.3 Score=32.11 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=51.3
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
.|+|.-. |+-..-....++++++-.+.|...+++.-+|++||+-. .|.+|+.....+-|...|+-++.
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~~~p~a~V~~v~~ 74 (91)
T 2fhm_A 7 IVDGRVQ-GVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVEAVKNGSPFSKVTDISV 74 (91)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHHHHHTTCSSSEEEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhCCCccEEEEEEE
Confidence 5788766 89999999999999999999988777778999999853 24444444333656666666543
No 7
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=88.46 E-value=0.25 Score=39.26 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=48.7
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
.+++.+.++ |+| |+|.+|... .=++.-+.|.|..-+++.+++ + ++..+|+|.+...-.+-++..|
T Consensus 30 mp~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~i----d-~~rlii~G~~~~~~i~~~L~~y 98 (138)
T 1nee_A 30 VPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNL----E-GGRAILQGKFTHFLINERIEDY 98 (138)
T ss_dssp CSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCC----B-TTTEEEESSCSSSHHHHHHHHH
T ss_pred cCCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceee----c-CCEEEEEeeeCHHHHHHHHHHH
Confidence 445555555 666 999998863 457899999999999999999 3 6799999998766555444443
No 8
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=87.73 E-value=3.1 Score=30.15 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=50.9
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
.|+|.-+ |+-..-....++.+++-.+.|...+++ -+|++||+- +.+.++|... +=|...|+-++
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~--~P~~A~V~~v~ 75 (91)
T 1gxu_A 12 RIRGKVQ-GVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQH--CPPLARIDSVE 75 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHT--CCTTCEEEEEE
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhC--CCCCEEEEEEE
Confidence 5788776 899999999999999999999877777 899999999 7777887653 22445555544
No 9
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.62 E-value=0.31 Score=39.54 Aligned_cols=71 Identities=8% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 102 RQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
.+++.+.++.++.+ .-|+|.+|... .=++.-+.|.|..-+++.+++. .+.+..+|+|.+.....+-++..|
T Consensus 25 mP~~~v~~eG~gnG-~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id---~~~~rlii~G~~~~~~i~~~L~~y 99 (157)
T 2e9h_A 25 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFD---VKNDRYIVNGSHEANKLQDMLDGF 99 (157)
T ss_dssp EECCCEEECSSSSS-CEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEE---TTTTEEEEEBCCCHHHHHHHHHHH
T ss_pred cCCCeEEEeccCCc-cEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec---CCCCEEEEEeeeCHHHHHHHHHHH
Confidence 45666777777544 35888888753 4578889999999999999992 156899999998766555444433
No 10
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=87.04 E-value=2.8 Score=30.85 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=50.2
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
.|+|.-. |+-..-....++.+++-.+.|...+++.-+|++||+ .+.|..|+.....+=|...|+-++
T Consensus 17 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~-~~~l~~f~~~l~~gPp~A~V~~v~ 83 (98)
T 3trg_A 17 TVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGE-RDSIMILTEWLWEGPPQAAVSNVN 83 (98)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHTTTCSTTCEEEEEE
T ss_pred EEEEeEC-CCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEEC-HHHHHHHHHHHHhCCCCcEEEEEE
Confidence 5778766 899999999999999999999877777789999998 445666665544343445555443
No 11
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=86.72 E-value=1.5 Score=33.96 Aligned_cols=66 Identities=17% Similarity=0.038 Sum_probs=48.6
Q ss_pred EeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 121 VKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 121 V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
|+|.-+ |+-..-....++.+++-.+.|...+++.-+|++||+- +.|.+||.....|=|...|+-++
T Consensus 40 V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~-~~v~~f~~~l~~gPp~A~V~~v~ 105 (121)
T 2lxf_A 40 VTGKVQ-GVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPK-EQVDAFVKYLHKGSPKSVVKKVS 105 (121)
T ss_dssp EEECTT-CCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEH-HHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EEEeeC-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEE
Confidence 667666 7888999999999999999998877777899999973 34444443333365666666554
No 12
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=85.11 E-value=3.7 Score=30.39 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=49.8
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
.|+|.-+ |+-..-.+..++++++-.|.|...+++.-+|++||+.. .|.+|+.....+=|...|+-++
T Consensus 19 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~gP~~A~V~~v~ 85 (101)
T 2bjd_A 19 RVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEE-ALSKLLERIKQGPPAAEVEKVD 85 (101)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHH-HHHHHHHHHTTCSTTCEEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhCCCccEEEEEE
Confidence 4888776 89999999999999999999988777778999999853 3555554444462335555443
No 13
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=84.76 E-value=3.6 Score=29.46 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=49.7
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEec
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
.|+|.=. |+-..-....++.+++-.+.|...+++.-+|.+||+- .+...++|. . +=|...|+-++
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~--gP~~a~V~~v~ 73 (88)
T 1ulr_A 7 LVKGRVQ-GVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-Q--GPRLARVEAVE 73 (88)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-H--CSTTCEEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-h--CCCCcEEEEEE
Confidence 5788766 8999999999999999999998777777899999985 445555554 2 43455665544
No 14
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=84.40 E-value=4 Score=29.45 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=49.7
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhCCCCCCCcEEEec
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
.|+|.-. |+-.......++.+++-.+.|...+++.-+|++||+-.. |.+|+.....+=|...|+-++
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~l~~gP~~a~V~~v~ 75 (91)
T 1w2i_A 9 KIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEER-VEALIGWAHQGPPLARVTRVE 75 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHH-HHHHHHHTTTCSTTCEEEEEE
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence 5788776 899999999999999999999887777789999998543 555554433243445555544
No 15
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=83.98 E-value=0.39 Score=39.49 Aligned_cols=71 Identities=8% Similarity=0.098 Sum_probs=50.3
Q ss_pred CCCcEEEEEEeecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCC-CceEEEcCCchhHHHHHHhhh
Q 028409 101 ERQEVVIEKVVRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTE-KEQIDVQGDISYDIVEFITDT 175 (209)
Q Consensus 101 ~~~~V~I~~~~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~-~~eI~IQGD~~~~i~~~L~~~ 175 (209)
..+++.+.++.++.++ -|+|.+|... .=++.-+.|.|..-+++.+++ ++ .+..+|+|.|....++-++..
T Consensus 17 kmP~~~v~~EG~gnG~-KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~i----d~~~~rliinG~~~~~~i~~~L~~ 91 (170)
T 2g2k_A 17 KMPRLIAKVEGKGNGI-KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQF----DVKNDRYIVNGSHEANKLQDMLDG 91 (170)
T ss_dssp CCCCCCCEEESCTTTC-EEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEE----CTTTCCEEEEBCCCHHHHHHHHHH
T ss_pred cCCCCeEEEeccCCcc-EEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceee----cCCCCEEEEEeeeCHHHHHHHHHH
Confidence 3667778888885432 4777776642 335666777888999999999 33 689999999877666555444
Q ss_pred C
Q 028409 176 W 176 (209)
Q Consensus 176 ~ 176 (209)
|
T Consensus 92 y 92 (170)
T 2g2k_A 92 F 92 (170)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=83.71 E-value=4.3 Score=29.69 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=49.4
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEec
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSF 188 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~d 188 (209)
.|+|.-. |+-..-....++++++-.+.|...+++.-+|++||+. .+...++|... +=|...|+-++
T Consensus 13 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~--~p~~a~V~~v~ 80 (99)
T 2vh7_A 13 EIFGKVQ-GVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETR--GSPKSHIDKAN 80 (99)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHT--CSTTCEEEEEE
T ss_pred EEEEeeC-CcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhc--CCCceEEEEEE
Confidence 4788776 8999999999999999999998777777899999985 34444455432 33455665544
No 17
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=83.50 E-value=4.4 Score=29.85 Aligned_cols=67 Identities=6% Similarity=0.066 Sum_probs=50.0
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
.|+|.-. |+-..-....++++++-.+.|...+++.-+|++||+. .+...++|..+ +=|...|+-++.
T Consensus 16 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~--gP~~a~V~~v~~ 84 (102)
T 1urr_A 16 EIFGRVQ-GVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENN--RIPNAKVSKAEF 84 (102)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHC--CSTTCEEEEEEE
T ss_pred EEEEeEC-CcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhc--CCCccEEEEEEE
Confidence 4888776 8999999999999999999998877777899999985 34455555432 435555655543
No 18
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=81.82 E-value=1.1 Score=29.96 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=37.0
Q ss_pred eecCCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCC
Q 028409 111 VRNKRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGD 163 (209)
Q Consensus 111 ~R~grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD 163 (209)
.|-|+| |+|.+|... .=++.-+.|.|.+-+++.+++ + ++..+|+|.
T Consensus 3 ~~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~i----d-~~rlii~G~ 52 (52)
T 1k8b_A 3 LIEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNL----E-GGRLILQRR 52 (52)
T ss_dssp EEETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEE----E-TTEEEEECC
T ss_pred EEEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeee----c-CCEEEEeCC
Confidence 355777 999998763 357889999999999999999 2 678888883
No 19
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=77.81 E-value=4.4 Score=29.28 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=46.0
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhh-CCCCCCCcEEEec
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT-WPAVISLSIFFSF 188 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~-~~gIp~~~I~~~d 188 (209)
.|+|.-. |+-..-....++++++-.+.|...+++.-+|++||+-. .|.+|+... ..+=|...|+-++
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~~gP~~a~V~~v~ 76 (92)
T 2gv1_A 9 WVYGRVQ-GVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEG-QVEKLMQWLKSGGPRSARVERVL 76 (92)
T ss_dssp EEEEECT-TTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHH-HHHHHHHHHHHTSSTTSEEEEEE
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHhhccCCCceEEEEEE
Confidence 4777665 77777888888999999999987777778999999853 244444333 3362334454443
No 20
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=73.67 E-value=1.4 Score=33.30 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=11.9
Q ss_pred CCCCCCceeEEEcCCCCC
Q 028409 1 MAEKPQPVRVLYCSICSL 18 (209)
Q Consensus 1 m~~~~~p~~V~YC~vCs~ 18 (209)
|+.....+.|.||.-|+|
T Consensus 3 m~~~~~~V~I~YC~~C~~ 20 (105)
T 2fa8_A 3 MTETKPRIAIRYCTQCNW 20 (105)
T ss_dssp ---CCCEEEEEEETTTTC
T ss_pred cCCCCCEEEEEECCCCCC
Confidence 555334499999999995
No 21
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=67.28 E-value=2.2 Score=32.46 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=11.8
Q ss_pred eeEEEcCCCCCCccc
Q 028409 8 VRVLYCSICSLPAEY 22 (209)
Q Consensus 8 ~~V~YC~vCs~P~EY 22 (209)
+.|.||.-|+|=+-|
T Consensus 15 V~I~YC~~C~w~lRa 29 (107)
T 3dex_A 15 VQIEYCTQCRWLPRA 29 (107)
T ss_dssp EEEEEETTTTCHHHH
T ss_pred EEEEECCCCCChHHH
Confidence 889999999875443
No 22
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=66.76 E-value=5.5 Score=29.05 Aligned_cols=54 Identities=17% Similarity=0.028 Sum_probs=41.9
Q ss_pred EEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhh
Q 028409 120 IVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDT 175 (209)
Q Consensus 120 ~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~ 175 (209)
.|+|.=. |+-..-.+..++++++-.+.|...+++.-+|++||+.. .|.+|+...
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~l~~f~~~l 65 (98)
T 1aps_A 12 EVFGRVQ-GVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEE-KVNSMKSWL 65 (98)
T ss_dssp EEECTTS-CCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHH-HHHHHHHSS
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHH
Confidence 4778766 78888889999999999999877666668999999853 355565443
No 23
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=65.00 E-value=0.17 Score=40.31 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=44.7
Q ss_pred CCeeEEEEeccCCC----CCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCchhHHHHHHhhhC
Q 028409 114 KRKCITIVKGLDLF----GVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 176 (209)
Q Consensus 114 grK~VT~V~GLe~f----gidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~~~~i~~~L~~~~ 176 (209)
|+| |+|.+|... .=++.-+.|.|..-+++.+++ ++++..+|+|.+...-.+-++..|
T Consensus 39 G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~i----d~~~rlii~G~~~~~~i~~~L~~y 99 (139)
T 3cw2_K 39 GNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNV----DDKGELVIQGKFSSQVINTLMERF 99 (139)
T ss_dssp SSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCC----SSSCCCTTTCSCCSCCSCSTTTTT
T ss_pred CCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEE----CCCCeEEEEeeeCHHHHHHHHHHH
Confidence 666 999999875 346888999999999999999 347889999998766555444444
No 24
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=62.52 E-value=3.3 Score=31.23 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=12.5
Q ss_pred CceeEEEcCCCCCCcc
Q 028409 6 QPVRVLYCSICSLPAE 21 (209)
Q Consensus 6 ~p~~V~YC~vCs~P~E 21 (209)
.-+.|.||.-|+|=+-
T Consensus 6 p~V~I~YC~~C~~~~R 21 (104)
T 2oka_A 6 PEIVITYCTQCQWLLR 21 (104)
T ss_dssp CEEEEEEETTTTCHHH
T ss_pred CEEEEEECCCCCChHH
Confidence 3489999999997443
No 25
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=61.92 E-value=2.4 Score=31.43 Aligned_cols=11 Identities=45% Similarity=0.999 Sum_probs=10.0
Q ss_pred ceeEEEcCCCC
Q 028409 7 PVRVLYCSICS 17 (209)
Q Consensus 7 p~~V~YC~vCs 17 (209)
.+.|.||..|+
T Consensus 4 ~V~I~YC~~C~ 14 (96)
T 2npb_A 4 AVRVVYSGACG 14 (96)
T ss_dssp EEEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 58999999999
No 26
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=55.13 E-value=4.6 Score=30.73 Aligned_cols=14 Identities=21% Similarity=0.702 Sum_probs=11.5
Q ss_pred ceeEEEcCCCCCCc
Q 028409 7 PVRVLYCSICSLPA 20 (209)
Q Consensus 7 p~~V~YC~vCs~P~ 20 (209)
-+.|.||+-|+|=+
T Consensus 10 ~V~I~YC~~C~w~l 23 (108)
T 2ojl_A 10 RIAIQYCTQCQWLL 23 (108)
T ss_dssp EEEEEEETTTTCHH
T ss_pred EEEEEECCCCCChH
Confidence 38999999999743
No 27
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=54.01 E-value=4.9 Score=30.32 Aligned_cols=15 Identities=20% Similarity=0.713 Sum_probs=12.0
Q ss_pred ceeEEEcCCCCCCcc
Q 028409 7 PVRVLYCSICSLPAE 21 (209)
Q Consensus 7 p~~V~YC~vCs~P~E 21 (209)
-+.|.||.-|+|=+-
T Consensus 5 ~V~I~YC~~C~w~~R 19 (105)
T 2p0g_A 5 QIEIYYCRQCNWMLR 19 (105)
T ss_dssp EEEEEEETTTTCHHH
T ss_pred EEEEEECCCCCChHH
Confidence 489999999997443
No 28
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=50.78 E-value=6.1 Score=30.35 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=10.3
Q ss_pred ceeEEEcCCCCC
Q 028409 7 PVRVLYCSICSL 18 (209)
Q Consensus 7 p~~V~YC~vCs~ 18 (209)
.+.|.||+-|+|
T Consensus 26 rV~IeYC~~C~~ 37 (117)
T 2ljk_A 26 RIVVEYCEPCGF 37 (117)
T ss_dssp CCEEEECTTTTC
T ss_pred eEEEEECCCCCC
Confidence 489999999974
No 29
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=42.50 E-value=23 Score=28.81 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=43.4
Q ss_pred CeeEEEEeccCCCCCCHHHHHHHHhh-hcccceeeeeCCCCCceEEEcCCchhHHHH---HHh-hhCCCCCCCcEEE
Q 028409 115 RKCITIVKGLDLFGVKLSDASKKLGK-KFATGASVVKGPTEKEQIDVQGDISYDIVE---FIT-DTWPAVISLSIFF 186 (209)
Q Consensus 115 rK~VT~V~GLe~fgidlk~lAK~lkk-kfAcg~SV~k~~~~~~eI~IQGD~~~~i~~---~L~-~~~~gIp~~~I~~ 186 (209)
|..+|+..|++.- ..+++.|.++- +.-.-++| -+++|-|.|--+|++-+ +|. ..| ++|..+.-+
T Consensus 93 rq~~~lk~GI~~e--~AKkIvK~IKdsklKVqa~I-----QGd~vRVtgKkrDDLQ~viallk~~d~-~~plQF~Nf 161 (163)
T 1in0_A 93 SKEIKLKQGIETE--MAKKITKLVKDSKIKVQTQI-----QGEQVRVTGKSRDDLQAVIQLVKSAEL-GQPFQFNNF 161 (163)
T ss_dssp EEEEEECCSCCHH--HHHHHHHHHHHHTCSEEEEE-----ETTEEEEEESCHHHHHHHHHHHHHSCC-SSCCEEEEE
T ss_pred EEEEEeecccCHH--HHHHHHHHHHhcCCcceeEe-----cCcEEEEecCCHHHHHHHHHHHHhcCC-CCCeeeccC
Confidence 4567777788863 56777777765 55667777 45788888888777754 555 355 677766544
No 30
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=40.33 E-value=50 Score=32.51 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=49.0
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhhCCCCCCCcEEEecc
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDTWPAVISLSIFFSFS 189 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~~~gIp~~~I~~~dk 189 (209)
-.|+|.-+ |+-..-+...++++++-.|.|...+++ -+|++||+- .+...++|... +=|...|+-++.
T Consensus 14 i~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~--~Pp~a~V~~v~~ 82 (761)
T 3vth_A 14 INIFGIVQ-GVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKEN--PPSLSVIDEIQV 82 (761)
T ss_dssp EEEEEECS-SSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHS--CCTTCEEEEEEE
T ss_pred EEEEEEeC-CcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcC--CCCCeEEEeeeE
Confidence 35788776 899999999999999999999777666 899999984 34444444432 345555655443
No 31
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=35.58 E-value=74 Score=27.80 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=43.5
Q ss_pred CHHHHHHHHhhhcccceeeeeCCC-CCceEEEcCC-chhHHHHHHhhhCCCCCCCcEEEeccc
Q 028409 130 KLSDASKKLGKKFATGASVVKGPT-EKEQIDVQGD-ISYDIVEFITDTWPAVISLSIFFSFSC 190 (209)
Q Consensus 130 dlk~lAK~lkkkfAcg~SV~k~~~-~~~eI~IQGD-~~~~i~~~L~~~~~gIp~~~I~~~dk~ 190 (209)
+.......|+-.|=+||||+.... .--||...+. +...|.++|...| |++.+.++.-..-
T Consensus 107 ~~~~~~A~lRGaFLa~GSv~dP~~~YHLEi~~~~~e~a~~l~~ll~~~~-~l~ak~~~Rk~~~ 168 (295)
T 3hyi_A 107 DVALFVSFLRGLFLSGGSMTNPRYHYHLEINLFEEETLALTRKSLKDFF-NINAGIIELRNTR 168 (295)
T ss_dssp SHHHHHHHHHHHHHHHEEECCTTTCCCEEEEESCHHHHHHHHHHHHHHH-CCCCEEEECSSCE
T ss_pred ChHHHHHHHHHHHhcCeecCCCCCceeEEEeeCcHHHHHHHHHHHHHhc-CCCceEEEECCcE
Confidence 455667789999999999975432 3378887775 6677777774678 9998888764443
No 32
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=34.99 E-value=3.6 Score=33.74 Aligned_cols=35 Identities=17% Similarity=0.483 Sum_probs=25.6
Q ss_pred EEcCCCCCCcccccc---CCChhhhHHHHHHhCCCchh
Q 028409 11 LYCSICSLPAEYCEF---GPDFEKCKPWLIKNAPELYP 45 (209)
Q Consensus 11 ~YC~vCs~P~EYCEf---g~~~~kCk~WL~~n~p~l~~ 45 (209)
.|||+|..|+.--+| .-.-+.|..|.-..+=.+-+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~ 40 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSD 40 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCH
Confidence 489999999877766 33346899998776655544
No 33
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.08 E-value=3.4 Score=28.41 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred ceeEEEcCCCCCCccccccCCChhhhHHHHH
Q 028409 7 PVRVLYCSICSLPAEYCEFGPDFEKCKPWLI 37 (209)
Q Consensus 7 p~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~ 37 (209)
.-..+|| +|+.|.++=+++-.-+.|..|.-
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H 42 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHH 42 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEE
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccC
Confidence 4567899 79999765444444467888853
No 34
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.11 E-value=3.3 Score=27.58 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=18.9
Q ss_pred eEEEcCCCCCCccccccCCChhhhHHHHHH
Q 028409 9 RVLYCSICSLPAEYCEFGPDFEKCKPWLIK 38 (209)
Q Consensus 9 ~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~ 38 (209)
...||++|..|..-=++.-.-+.|..|.-.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~ 34 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHG 34 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEET
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCc
Confidence 346999999997421333333578888543
No 35
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.26 E-value=5.2 Score=27.97 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=19.5
Q ss_pred CCceeEEEcCCCCCCccccccCCCh--h--hhHHHH
Q 028409 5 PQPVRVLYCSICSLPAEYCEFGPDF--E--KCKPWL 36 (209)
Q Consensus 5 ~~p~~V~YC~vCs~P~EYCEfg~~~--~--kCk~WL 36 (209)
..|-..+|| +|+.|.+ +|.+. + .|..|.
T Consensus 11 ~~~~~~~~C-iC~~~~~---~g~MI~CD~~~C~~W~ 42 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLE---TDSMIQCEDPRCHVWQ 42 (78)
T ss_dssp SSCCCCCCC-SSCCCCC---CSCEEECSSTTTCCEE
T ss_pred cCCCCCEEe-ECCCcCC---CCCEEEECCccCCccc
Confidence 356678999 8999953 34433 4 788885
No 36
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*
Probab=24.37 E-value=82 Score=23.37 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.2
Q ss_pred CCCcEEEEEEeecCCeeEEEEe
Q 028409 101 ERQEVVIEKVVRNKRKCITIVK 122 (209)
Q Consensus 101 ~~~~V~I~~~~R~grK~VT~V~ 122 (209)
....+.+....|-++|+||+|-
T Consensus 70 k~~vlalg~T~Ry~~KyVT~vl 91 (97)
T 2qrd_B 70 QLGVLALSATTRYHRKYVTTAM 91 (97)
T ss_dssp SSSSEEEEEEEEETTEEEEEEE
T ss_pred cCCeEEEeeeeeeeceeEEEEE
Confidence 3678999999999999999983
No 37
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.06 E-value=4.7 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=20.2
Q ss_pred CceeEEEcCCCCCCccccccCCChhhhHHHHH
Q 028409 6 QPVRVLYCSICSLPAEYCEFGPDFEKCKPWLI 37 (209)
Q Consensus 6 ~p~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~ 37 (209)
.+-..+|| +|+.|.. =+++-.-+.|..|.-
T Consensus 15 ~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH 44 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA-GRPMIECNECHTWIH 44 (68)
T ss_dssp TTTTCCCS-TTCCCCT-TCCEEECTTTCCEEE
T ss_pred CCCCceEe-ECCCcCC-CCCEEECCCCCcccc
Confidence 35678899 9999875 233333467888863
No 38
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=23.99 E-value=61 Score=24.06 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=27.4
Q ss_pred chhHHHHHHhhhCCCCCCCcEEEecccccchhhhccccCCCcccC
Q 028409 164 ISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPL 208 (209)
Q Consensus 164 ~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~~~~~~~~~~~~ 208 (209)
--+.+.+.+.+.|+++....+.+ -|+|-+||.|++
T Consensus 43 s~~~L~~~V~~lFp~l~~~~f~l----------~Y~DedGDlIti 77 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALRPGGFQA----------HYRAERGDLVAF 77 (102)
T ss_dssp HHHHHHHHHHHHCTTSCSSCEEE----------EEECTTCCEEEE
T ss_pred cHHHHHHHHHHHccccCCCcEEE----------EEECCCCCEEEe
Confidence 46788888889888777655554 488999999986
No 39
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=23.96 E-value=18 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=25.5
Q ss_pred chhHHHHHHhhhCCCCCCCcEEEecccccchhhh
Q 028409 164 ISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCI 197 (209)
Q Consensus 164 ~~~~i~~~L~~~~~gIp~~~I~~~dk~~~~~~~~ 197 (209)
-..+|+..|.++||++.+..|.+.| ||+|-+
T Consensus 18 D~~dIA~~L~e~~Pd~DP~tvRFTd---L~~wV~ 48 (77)
T 1uj8_A 18 DSREIGEALYDAYPDLDPKTVRFTD---MHQWIC 48 (77)
T ss_dssp CHHHHHHHHHHHSTTSCGGGCCHHH---HHHHHH
T ss_pred CHHHHHHHHHHHCCCCCcCEeeHHH---HHHHHH
Confidence 4678999999999999998888765 788754
No 40
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*
Probab=23.75 E-value=80 Score=22.99 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=18.3
Q ss_pred CCcEEEEEEeecCCeeEEEE
Q 028409 102 RQEVVIEKVVRNKRKCITIV 121 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V 121 (209)
...+.+....|-++|+||+|
T Consensus 63 ~~v~alg~T~Ry~~KyVT~v 82 (87)
T 2v8q_B 63 DSVMVLSATHRYKKKYVTTL 82 (87)
T ss_dssp TTEEEEEEEEEETTEEEEEE
T ss_pred CCeEEEeeeeeecceeEEEE
Confidence 67889999999999999998
No 41
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=23.06 E-value=57 Score=32.07 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=41.9
Q ss_pred EEEeccCCCCCCHHHHHHHHhhhcccceeeeeCCCCCceEEEcCCc--hhHHHHHHhhh
Q 028409 119 TIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI--SYDIVEFITDT 175 (209)
Q Consensus 119 T~V~GLe~fgidlk~lAK~lkkkfAcg~SV~k~~~~~~eI~IQGD~--~~~i~~~L~~~ 175 (209)
..|+|+-+ |+-..-+.-.|+++++-.|.|....+.+-+|+|||+. .+...+-|..+
T Consensus 6 i~v~G~VQ-GVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~~~~~~F~~~l~~~ 63 (772)
T 4g9i_A 6 IHVQGIVQ-AVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGREEDIEAFIEDLYKK 63 (772)
T ss_dssp EEECSSTT-TSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCSTTHHHHHHHHHHS
T ss_pred EEEEEEEe-CCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 45788888 8999999999999999999985433346799999974 34444444443
No 42
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=21.96 E-value=1.4e+02 Score=24.20 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhcc---cceeeeeCCCCCceEEEcCCc---hhHHHHHHhhhC--CCCCCCcEEE
Q 028409 131 LSDASKKLGKKFA---TGASVVKGPTEKEQIDVQGDI---SYDIVEFITDTW--PAVISLSIFF 186 (209)
Q Consensus 131 lk~lAK~lkkkfA---cg~SV~k~~~~~~eI~IQGD~---~~~i~~~L~~~~--~gIp~~~I~~ 186 (209)
+..+.|++..+|- +++++.-+ .+...|.|-+|- ...+.++|..++ .||+...+++
T Consensus 19 v~qa~kEi~~RfDFKgs~a~iel~-~k~~~i~l~a~~d~kl~qv~DiL~~kl~KRgid~k~ld~ 81 (163)
T 1in0_A 19 VENANRVLSTRYDFRGVEAVIELN-EKNETIKITTESDFQLEQLIEILIGSCIKRGIEHSSLDI 81 (163)
T ss_dssp HHHHHHHHTTBGGGTTCCEEEEEE-TTTTEEEEEESCHHHHHHHHHHHHHHHHHTTCCGGGEEC
T ss_pred HHHHHHHHhcccccCCCccEEEEc-CCCcEEEEEeCCHHHHHHHHHHHHHHHHHcCCCchhccc
Confidence 3456788888987 78888542 334689998884 566677777654 6899888886
No 43
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*
Probab=20.77 E-value=94 Score=23.71 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.0
Q ss_pred CCcEEEEEEeecCCeeEEEE
Q 028409 102 RQEVVIEKVVRNKRKCITIV 121 (209)
Q Consensus 102 ~~~V~I~~~~R~grK~VT~V 121 (209)
...+.+....|=++|+||+|
T Consensus 86 ~~vlalg~T~RYk~KyVT~V 105 (113)
T 3t4n_B 86 HNTLCVASIVRYKQKYVTQI 105 (113)
T ss_dssp TTEEEEEEEEEETTEEEEEE
T ss_pred CceEEEeeeeeeeceeEEEE
Confidence 46788999999999999998
No 44
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=20.31 E-value=22 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=20.5
Q ss_pred CCccccccCCChhhhHHHHHHhCCCc
Q 028409 18 LPAEYCEFGPDFEKCKPWLIKNAPEL 43 (209)
Q Consensus 18 ~P~EYCEfg~~~~kCk~WL~~n~p~l 43 (209)
+-.-||.+|++-..-+++++.|.|++
T Consensus 22 l~~~yc~~~~sS~G~R~Fl~~~l~~~ 47 (102)
T 1s3a_A 22 IRIHLCQRSPGSQGVRDFIEKRYVEL 47 (102)
T ss_dssp EEEECCSSSCCCHHHHHHHHHTHHHH
T ss_pred EEEEEcCCCCCchhHHHHHHHhhHHH
Confidence 34568899999999999998776644
Done!