RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028409
         (209 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 96  KIKKKERQEVVIEKVVRNKRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEK 155
            +       + I    RN RK +T V+G+           K   KKFA   +V++ P   
Sbjct: 35  LLPAGTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYG 93

Query: 156 EQIDVQGDISYDIVEFITD 174
           E I +QGD   +I +F+ +
Sbjct: 94  EVIQLQGDQRKNICQFLVE 112


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 114 KRKCITIVKGLDLFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFIT 173
           K K + ++ G+DL   +L+  + +L KK   G +V  G      I++QGD    +   + 
Sbjct: 16  KGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSLLE 70

Query: 174 D 174
            
Sbjct: 71  A 71


>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT)
           {Escherichia coli [TaxId: 562]}
          Length = 311

 Score = 26.4 bits (58), Expect = 2.6
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 119 TIVKGLD-LFGVKLSDASKKLGKKFATGASVV--KGPTEKEQIDVQGDISYDIV 169
            + K LD L   +L     K     A GA ++   G  + +Q D    ++  + 
Sbjct: 52  RVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEMVKLATAVA 105


>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 392

 Score = 25.9 bits (56), Expect = 4.4
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 162 GDISYDIVEFITDTWPAVISLSIFFSFSCVLHKWCIWKTLKEDFVPLF 209
           G I +D+ +FI + +   +S           H   +W+T +E F   +
Sbjct: 253 GPIGFDVGQFIANLFLNALSRDGADREPLYEHVNQVWETFEETFSEAW 300


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 788,372
Number of extensions: 35339
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 5
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)