BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028410
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0PQX0|PHMT1_MYCUA Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase 1
OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_2377
PE=3 SV=1
Length = 271
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 99 KVLCVSAG-AGHEVMAFNSIGVADVTGVEL----------MDSLPLVS--RADPHNLPFF 145
+VL VS G G ++ A TG++L +LP + R D NLPF
Sbjct: 83 RVLEVSCGHGGGASYLTRTLHPASYTGLDLNRAGIKLCQRRHNLPGLDFVRGDAENLPFE 142
Query: 146 DEAFDVAFTAHLAEALFP--SRFVGEMERTVKIGGVCM 181
DE+FDV A +P SRF+ E+ R ++ GG +
Sbjct: 143 DESFDVVLKVE-ASHCYPHFSRFLAEVVRVLRPGGYLL 179
>sp|Q50464|PHMT_MYCTU Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium tuberculosis GN=Rv2952 PE=1 SV=1
Length = 270
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 99 KVLCVSAG-AGHEVMAFNSIGVADVTGVELMDS----------LPLVS--RADPHNLPFF 145
+VL VS G G ++ A TG++L + LP + R D NLPF
Sbjct: 83 QVLEVSCGHGGGASYLTRTLHPASYTGLDLNQAGIKLCKKRHRLPGLDFVRGDAENLPFD 142
Query: 146 DEAFDVAFTAHLAEALFP--SRFVGEMERTVKIGG 178
DE+FDV A +P RF+ E+ R ++ GG
Sbjct: 143 DESFDVVLNVE-ASHCYPHFRRFLAEVVRVLRPGG 176
>sp|A5U6W0|PHMT_MYCTA Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium tuberculosis (strain ATCC 25177 /
H37Ra) GN=MRA_2979 PE=3 SV=1
Length = 270
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 99 KVLCVSAG-AGHEVMAFNSIGVADVTGVELMDS----------LPLVS--RADPHNLPFF 145
+VL VS G G ++ A TG++L + LP + R D NLPF
Sbjct: 83 QVLEVSCGHGGGASYLTRTLHPASYTGLDLNQAGIKLCKKRHRLPGLDFVRGDAENLPFD 142
Query: 146 DEAFDVAFTAHLAEALFP--SRFVGEMERTVKIGG 178
DE+FDV A +P RF+ E+ R ++ GG
Sbjct: 143 DESFDVVLNVE-ASHCYPHFRRFLAEVVRVLRPGG 176
>sp|A1KMU6|PHMT_MYCBP Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
GN=BCG_2973 PE=3 SV=1
Length = 270
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 99 KVLCVSAG-AGHEVMAFNSIGVADVTGVELMDS----------LPLVS--RADPHNLPFF 145
+VL VS G G ++ A TG++L + LP + R D NLPF
Sbjct: 83 QVLEVSCGHGGGASYLTRTLHPASYTGLDLNQAGIKLCKKRHRLPGLDFVRGDAENLPFD 142
Query: 146 DEAFDVAFTAHLAEALFP--SRFVGEMERTVKIGG 178
DE+FDV A +P RF+ E+ R ++ GG
Sbjct: 143 DESFDVVLNVE-ASHCYPHFRRFLAEVVRVLRPGG 176
>sp|Q7TXK3|PHMT_MYCBO Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=Mb2976 PE=3 SV=1
Length = 270
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 99 KVLCVSAG-AGHEVMAFNSIGVADVTGVELMDS----------LPLVS--RADPHNLPFF 145
+VL VS G G ++ A TG++L + LP + R D NLPF
Sbjct: 83 QVLEVSCGHGGGASYLTRTLHPASYTGLDLNQAGIKLCKKRHRLPGLDFVRGDAENLPFD 142
Query: 146 DEAFDVAFTAHLAEALFP--SRFVGEMERTVKIGG 178
DE+FDV A +P RF+ E+ R ++ GG
Sbjct: 143 DESFDVVLNVE-ASHCYPHFRRFLAEVVRVLRPGG 176
>sp|P75672|YAFS_ECOLI Uncharacterized protein YafS OS=Escherichia coli (strain K12)
GN=yafS PE=4 SV=2
Length = 240
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 130 SLPLVSRADPHNLPFFDEAFDVAFTAH-LAEALFPSRFVGEMERT-VKIGGVCMVLMEEC 187
+P+ +ADP +LPF D++ DV AH L P R + E +R + G + +
Sbjct: 72 GMPVQVQADPLHLPFADKSVDVCLLAHTLPWCTDPHRLLREADRVLIDDGWLVISGFNPI 131
Query: 188 AGREIKQIVELFRTSS 203
+ ++++V + R +S
Sbjct: 132 SFMGLRKLVPVLRKTS 147
>sp|O69492|Y2584_MYCLE Uncharacterized methyltransferase ML2584 OS=Mycobacterium leprae
(strain TN) GN=ML2584 PE=3 SV=1
Length = 269
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 100 VLCVSAGAGHEVMAFNSIGVADV-----------TGVELMDSLPLVSRADPHNLPFFDEA 148
+L V +G+G+ AF GV + G L+ RA LPF D+A
Sbjct: 76 LLDVGSGSGYFAAAFADAGVRYIGVEPDPREMHAAGPALVPKAGAFVRASGMALPFADDA 135
Query: 149 FDVAFTAHLAEALF-PSRFVGEMERTVKIGGVCMV 182
D+ ++++AE + P + EM R K GG+ ++
Sbjct: 136 VDICLSSNVAEHVPQPWQLGNEMLRVTKPGGLVVL 170
>sp|B8ZTF7|Y2584_MYCLB Uncharacterized methyltransferase MLBr02584 OS=Mycobacterium leprae
(strain Br4923) GN=MLBr02584 PE=3 SV=1
Length = 269
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 100 VLCVSAGAGHEVMAFNSIGVADV-----------TGVELMDSLPLVSRADPHNLPFFDEA 148
+L V +G+G+ AF GV + G L+ RA LPF D+A
Sbjct: 76 LLDVGSGSGYFAAAFADAGVRYIGVEPDPREMHAAGPALVPKAGAFVRASGMALPFADDA 135
Query: 149 FDVAFTAHLAEALF-PSRFVGEMERTVKIGGVCMV 182
D+ ++++AE + P + EM R K GG+ ++
Sbjct: 136 VDICLSSNVAEHVPQPWQLGNEMLRVTKPGGLVVL 170
>sp|Q9CD86|PHMT_MYCLE Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium leprae (strain TN) GN=ML0130 PE=3 SV=1
Length = 270
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 136 RADPHNLPFFDEAFDVAFTAHLAEAL--FPSRFVGEMERTVKIGG 178
R D NLPF +E+FDV + FP RF+ E+ R ++ GG
Sbjct: 133 RGDAENLPFDNESFDVVINIEASHCYPHFP-RFLAEVVRVLRPGG 176
>sp|Q8PB55|LEPA_XANCP Elongation factor 4 OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=lepA PE=3
SV=1
Length = 601
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFD 146
HL K +F + V+ GAG EV N+ + DV G + D+L L + PH LP F
Sbjct: 237 HLVDKVGVFTPKRKELVALGAG-EVGWINA-SIKDVHGAPVGDTLTLAADPAPHALPGFQ 294
Query: 147 EAFDVAFTAHLAEALFP 163
E F LFP
Sbjct: 295 EMQPRVFA-----GLFP 306
>sp|B0RX30|LEPA_XANCB Elongation factor 4 OS=Xanthomonas campestris pv. campestris
(strain B100) GN=lepA PE=3 SV=1
Length = 601
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFD 146
HL K +F + V+ GAG EV N+ + DV G + D+L L + PH LP F
Sbjct: 237 HLVDKVGVFTPKRKELVALGAG-EVGWINA-SIKDVHGAPVGDTLTLAADPAPHALPGFQ 294
Query: 147 EAFDVAFTAHLAEALFP 163
E F LFP
Sbjct: 295 EMQPRVFA-----GLFP 306
>sp|Q4USF4|LEPA_XANC8 Elongation factor 4 OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=lepA PE=3 SV=1
Length = 601
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFD 146
HL K +F + V+ GAG EV N+ + DV G + D+L L + PH LP F
Sbjct: 237 HLVDKVGVFTPKRKELVALGAG-EVGWINA-SIKDVHGAPVGDTLTLAADPAPHALPGFQ 294
Query: 147 EAFDVAFTAHLAEALFP 163
E F LFP
Sbjct: 295 EMQPRVFA-----GLFP 306
>sp|Q6B0K9|HBM_HUMAN Hemoglobin subunit mu OS=Homo sapiens GN=HBM PE=2 SV=1
Length = 141
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 84 FFKHL---QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPH 140
+F HL Q + L +H + + + GA A + L D LV R DP
Sbjct: 42 YFPHLSACQDATQLLSHGQRMLAAVGA-----AVQHVDNLRAALSPLADLHALVLRVDPA 96
Query: 141 NLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVK--IGGVCMVLMEE 186
N P + F V +HL + F +M+ + GV +VL E+
Sbjct: 97 NFPLLIQCFHVVLASHLQD-----EFTVQMQAAWDKFLTGVAVVLTEK 139
>sp|A1R990|UBIE_ARTAT Demethylmenaquinone methyltransferase OS=Arthrobacter aurescens
(strain TC1) GN=ubiE PE=3 SV=1
Length = 253
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR----------ADPHNLPFFDEA 148
KVL ++AG G + GV DV + + V + D NLPF D +
Sbjct: 54 KVLDLAAGTGTSSEPYADAGV-DVVACDFSLGMLKVGKRRRPDIDFIAGDATNLPFADNS 112
Query: 149 FDVA-FTAHLAEALFPSRFVGEMERTVKIGGVCMV 182
FD + + L + P + + EM R K GG ++
Sbjct: 113 FDASTISFGLRNVVEPRKALEEMLRVTKPGGRLVI 147
>sp|Q21JL7|CMOB_SACD2 tRNA (mo5U34)-methyltransferase OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=cmoB PE=3 SV=1
Length = 325
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 23/104 (22%)
Query: 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVEL--------------------MDSLPLV 134
H K+L V G G+ G + V G++ +D LP+
Sbjct: 121 LKHRKILDVGCGNGYHCWRMYGEGASQVIGIDPSPRFVVQFYMLKHFIGSNAPVDLLPVP 180
Query: 135 SRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
A P NL FD F + H P + E++ T++ GG
Sbjct: 181 MEAVPANLQAFDTTFSMGVLYHRRS---PMDHLRELKATLRPGG 221
>sp|B0RCZ0|UBIE_CLAMS Demethylmenaquinone methyltransferase OS=Clavibacter michiganensis
subsp. sepedonicus (strain ATCC 33113 / JCM 9667)
GN=ubiE PE=3 SV=1
Length = 245
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 137 ADPHNLPFFDEAFD-VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182
AD +LPF D++FD V + L + P + + E+ R +K GG ++
Sbjct: 104 ADATDLPFDDDSFDAVTISFGLRNVVEPRKGLDELLRVLKPGGRIVI 150
>sp|O83108|Y069_TREPA Uncharacterized protein TP_0069 OS=Treponema pallidum (strain
Nichols) GN=TP_0069 PE=4 SV=1
Length = 176
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 21 TFTLVMLMLQTPETCILENSPKSTKFPKSS 50
T+ LV+L+L + C+ +NS + +FP SS
Sbjct: 62 TWALVLLVLSSTSACVRKNSLEDVRFPSSS 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,449,948
Number of Sequences: 539616
Number of extensions: 2743706
Number of successful extensions: 5546
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5540
Number of HSP's gapped (non-prelim): 26
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)