Query 028410
Match_columns 209
No_of_seqs 206 out of 2632
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.8 9.4E-21 2E-25 151.3 9.3 94 93-186 48-158 (238)
2 PF01209 Ubie_methyltran: ubiE 99.8 3.2E-19 7E-24 143.3 8.0 94 94-187 45-156 (233)
3 PF08241 Methyltransf_11: Meth 99.8 9.7E-19 2.1E-23 120.4 5.9 82 101-182 1-95 (95)
4 PLN02233 ubiquinone biosynthes 99.8 1.1E-17 2.5E-22 136.7 12.1 94 93-186 70-184 (261)
5 PRK14103 trans-aconitate 2-met 99.7 3.9E-17 8.4E-22 133.1 11.8 116 69-185 2-127 (255)
6 PLN02396 hexaprenyldihydroxybe 99.7 9.3E-17 2E-21 134.5 12.6 90 95-185 130-236 (322)
7 PRK10258 biotin biosynthesis p 99.7 1.7E-16 3.7E-21 128.9 12.9 91 95-186 41-142 (251)
8 PLN02244 tocopherol O-methyltr 99.7 1.5E-16 3.2E-21 134.8 13.0 91 95-185 117-224 (340)
9 COG2227 UbiG 2-polyprenyl-3-me 99.7 3.1E-17 6.8E-22 129.5 5.4 91 95-186 58-163 (243)
10 TIGR02752 MenG_heptapren 2-hep 99.7 4.7E-16 1E-20 124.7 11.4 94 93-186 42-153 (231)
11 PRK05785 hypothetical protein; 99.7 7.3E-16 1.6E-20 123.5 11.8 93 95-188 50-150 (226)
12 PF13489 Methyltransf_23: Meth 99.7 1.2E-16 2.5E-21 120.6 6.1 93 94-187 20-118 (161)
13 PRK15068 tRNA mo(5)U34 methylt 99.7 8.5E-16 1.8E-20 129.1 11.8 110 95-205 121-268 (322)
14 PRK01683 trans-aconitate 2-met 99.7 6.8E-16 1.5E-20 125.9 10.6 116 69-185 4-131 (258)
15 TIGR00452 methyltransferase, p 99.6 1.5E-15 3.3E-20 126.7 12.1 112 94-206 119-268 (314)
16 KOG1540 Ubiquinone biosynthesi 99.6 1.4E-15 2.9E-20 120.7 10.7 95 93-187 97-217 (296)
17 PTZ00098 phosphoethanolamine N 99.6 2.4E-15 5.3E-20 123.1 11.8 93 93-185 49-157 (263)
18 PRK11036 putative S-adenosyl-L 99.6 1.1E-15 2.4E-20 124.5 9.7 91 95-186 43-151 (255)
19 PF13847 Methyltransf_31: Meth 99.6 7.3E-16 1.6E-20 116.0 7.8 91 95-186 2-112 (152)
20 PLN02336 phosphoethanolamine N 99.6 4.2E-15 9.1E-20 131.2 11.8 93 93-185 263-370 (475)
21 PRK11207 tellurite resistance 99.6 4.8E-15 1E-19 116.4 10.6 88 94-183 28-133 (197)
22 PLN02490 MPBQ/MSBQ methyltrans 99.6 3.3E-15 7.2E-20 125.7 10.1 112 95-206 112-251 (340)
23 PRK00107 gidB 16S rRNA methylt 99.6 8E-15 1.7E-19 114.0 10.5 91 93-187 42-148 (187)
24 PRK11873 arsM arsenite S-adeno 99.6 7.5E-15 1.6E-19 120.7 10.5 113 93-205 74-224 (272)
25 TIGR00477 tehB tellurite resis 99.6 9.9E-15 2.2E-19 114.4 10.0 108 95-204 29-164 (195)
26 PF12847 Methyltransf_18: Meth 99.6 2.8E-15 6.2E-20 106.7 6.2 88 96-184 1-111 (112)
27 PF08003 Methyltransf_9: Prote 99.6 1.2E-14 2.6E-19 118.8 10.6 111 95-206 114-262 (315)
28 KOG1270 Methyltransferases [Co 99.6 1.6E-15 3.4E-20 120.9 4.9 86 97-186 90-197 (282)
29 PRK08317 hypothetical protein; 99.6 3.5E-14 7.6E-19 113.6 12.4 93 93-185 16-125 (241)
30 TIGR02072 BioC biotin biosynth 99.6 2.4E-14 5.2E-19 114.7 11.2 92 95-186 33-137 (240)
31 PRK11188 rrmJ 23S rRNA methylt 99.6 2.1E-14 4.5E-19 113.8 10.3 94 93-186 48-167 (209)
32 PF08242 Methyltransf_12: Meth 99.6 6.2E-15 1.3E-19 102.9 5.7 80 101-180 1-99 (99)
33 TIGR00138 gidB 16S rRNA methyl 99.6 3.8E-14 8.3E-19 109.8 10.3 105 96-204 42-162 (181)
34 PF03848 TehB: Tellurite resis 99.5 2.1E-14 4.6E-19 111.5 8.4 110 95-206 29-166 (192)
35 PF05148 Methyltransf_8: Hypot 99.5 3.4E-14 7.3E-19 110.3 9.3 136 58-205 44-179 (219)
36 PRK12335 tellurite resistance 99.5 4.3E-14 9.2E-19 117.2 9.5 109 96-206 120-256 (287)
37 KOG4300 Predicted methyltransf 99.5 4.3E-14 9.2E-19 109.0 8.6 94 95-188 75-186 (252)
38 TIGR03840 TMPT_Se_Te thiopurin 99.5 3E-14 6.4E-19 113.1 7.3 110 95-205 33-183 (213)
39 PRK11088 rrmA 23S rRNA methylt 99.5 6.3E-14 1.4E-18 115.3 9.1 87 95-187 84-184 (272)
40 TIGR03587 Pse_Me-ase pseudamin 99.5 1.8E-13 4E-18 107.9 11.1 88 94-184 41-142 (204)
41 smart00828 PKS_MT Methyltransf 99.5 1E-13 2.2E-18 110.7 9.7 106 98-204 1-137 (224)
42 PRK00121 trmB tRNA (guanine-N( 99.5 3.8E-14 8.2E-19 111.7 6.3 108 95-204 39-174 (202)
43 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.4E-14 1.4E-18 113.7 7.6 89 94-184 54-164 (247)
44 smart00138 MeTrc Methyltransfe 99.5 1.5E-13 3.2E-18 112.6 9.8 104 84-187 87-245 (264)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 6.7E-13 1.4E-17 105.3 13.1 92 94-185 37-144 (223)
46 PRK13255 thiopurine S-methyltr 99.5 2.5E-13 5.5E-18 108.1 10.1 111 94-205 35-186 (218)
47 PRK00216 ubiE ubiquinone/menaq 99.5 5.6E-13 1.2E-17 106.9 12.0 92 94-185 49-159 (239)
48 PF13649 Methyltransf_25: Meth 99.5 2.2E-14 4.7E-19 100.6 3.2 79 100-178 1-101 (101)
49 PLN02336 phosphoethanolamine N 99.5 3.4E-13 7.3E-18 119.1 10.9 111 95-206 36-177 (475)
50 TIGR00740 methyltransferase, p 99.5 1.8E-13 3.9E-18 110.4 8.4 88 95-184 52-161 (239)
51 KOG1541 Predicted protein carb 99.5 2.8E-13 6E-18 105.6 8.9 108 96-204 50-180 (270)
52 COG4106 Tam Trans-aconitate me 99.4 2.9E-13 6.3E-18 105.2 7.9 101 85-186 19-131 (257)
53 PF02353 CMAS: Mycolic acid cy 99.4 5E-13 1.1E-17 109.8 9.3 98 85-186 51-168 (273)
54 PF07021 MetW: Methionine bios 99.4 4.5E-13 9.7E-18 103.1 8.3 90 94-186 11-111 (193)
55 PRK06922 hypothetical protein; 99.4 2.7E-13 5.8E-18 121.3 8.1 91 95-185 417-538 (677)
56 PF05175 MTS: Methyltransferas 99.4 9E-13 1.9E-17 101.1 9.8 109 96-206 31-161 (170)
57 COG2230 Cfa Cyclopropane fatty 99.4 2.1E-12 4.5E-17 105.4 12.1 96 88-187 64-179 (283)
58 TIGR02469 CbiT precorrin-6Y C5 99.4 1.2E-12 2.7E-17 94.3 9.5 91 93-185 16-123 (124)
59 TIGR00537 hemK_rel_arch HemK-r 99.4 1.2E-12 2.6E-17 101.2 9.4 105 95-204 18-158 (179)
60 PRK14967 putative methyltransf 99.4 1.8E-12 3.8E-17 103.7 10.6 109 93-204 33-177 (223)
61 PRK11705 cyclopropane fatty ac 99.4 1.3E-12 2.9E-17 112.2 10.2 90 92-185 163-268 (383)
62 KOG3045 Predicted RNA methylas 99.4 1.2E-12 2.7E-17 104.1 9.1 107 95-205 179-285 (325)
63 PRK08287 cobalt-precorrin-6Y C 99.4 4.7E-12 1E-16 98.5 11.2 107 93-205 28-150 (187)
64 TIGR00091 tRNA (guanine-N(7)-) 99.4 6.6E-13 1.4E-17 104.0 6.3 107 95-203 15-149 (194)
65 TIGR00438 rrmJ cell division p 99.4 1.3E-11 2.9E-16 96.0 13.2 95 91-185 27-147 (188)
66 PRK05134 bifunctional 3-demeth 99.4 3.2E-12 6.8E-17 102.7 9.9 91 94-185 46-152 (233)
67 PTZ00146 fibrillarin; Provisio 99.4 3.9E-12 8.5E-17 104.5 10.4 113 72-186 108-239 (293)
68 PRK04266 fibrillarin; Provisio 99.4 5.7E-12 1.2E-16 100.9 11.2 112 92-205 68-204 (226)
69 TIGR02081 metW methionine bios 99.4 2.8E-12 6.2E-17 100.3 8.4 83 95-177 12-105 (194)
70 PRK13944 protein-L-isoaspartat 99.4 4.8E-12 1E-16 100.0 9.7 89 93-186 69-175 (205)
71 PF05401 NodS: Nodulation prot 99.3 4E-12 8.7E-17 98.1 8.4 90 95-186 42-148 (201)
72 PRK15001 SAM-dependent 23S rib 99.3 9.3E-12 2E-16 106.3 11.2 108 96-205 228-360 (378)
73 PRK09489 rsmC 16S ribosomal RN 99.3 8.5E-12 1.8E-16 105.6 10.7 106 96-204 196-322 (342)
74 TIGR00406 prmA ribosomal prote 99.3 6E-12 1.3E-16 104.4 9.1 102 95-202 158-275 (288)
75 PRK13942 protein-L-isoaspartat 99.3 1.1E-11 2.3E-16 98.5 9.1 89 93-186 73-178 (212)
76 TIGR01983 UbiG ubiquinone bios 99.3 1.5E-11 3.3E-16 98.0 10.0 89 96-185 45-150 (224)
77 TIGR02716 C20_methyl_CrtF C-20 99.3 1.9E-11 4.2E-16 102.1 11.1 93 90-185 143-255 (306)
78 TIGR03534 RF_mod_PrmC protein- 99.3 1.6E-11 3.5E-16 99.4 9.3 108 95-206 86-236 (251)
79 PRK06202 hypothetical protein; 99.3 8.4E-12 1.8E-16 100.3 7.5 81 95-175 59-159 (232)
80 COG4123 Predicted O-methyltran 99.3 1.1E-11 2.4E-16 99.5 7.8 107 95-204 43-187 (248)
81 KOG3010 Methyltransferase [Gen 99.3 8.3E-12 1.8E-16 98.6 7.0 85 98-183 35-135 (261)
82 PRK00377 cbiT cobalt-precorrin 99.3 2.9E-11 6.4E-16 94.9 10.1 108 93-204 37-163 (198)
83 PRK00517 prmA ribosomal protei 99.3 3.8E-12 8.1E-17 103.5 5.1 107 94-204 117-231 (250)
84 TIGR01177 conserved hypothetic 99.3 2.5E-11 5.3E-16 102.5 9.8 94 92-186 178-296 (329)
85 PRK14968 putative methyltransf 99.3 2.7E-11 5.8E-16 93.7 9.1 106 95-204 22-166 (188)
86 PRK13256 thiopurine S-methyltr 99.3 1.9E-11 4.1E-16 97.4 8.0 108 93-201 40-188 (226)
87 TIGR00080 pimt protein-L-isoas 99.3 3.8E-11 8.2E-16 95.5 9.5 89 93-186 74-179 (215)
88 TIGR02021 BchM-ChlM magnesium 99.2 3.2E-11 7E-16 96.0 8.8 85 94-182 53-156 (219)
89 PF13659 Methyltransf_26: Meth 99.2 6E-12 1.3E-16 90.2 4.0 89 97-185 1-116 (117)
90 COG2264 PrmA Ribosomal protein 99.2 2.2E-11 4.7E-16 100.2 7.7 107 95-205 161-282 (300)
91 PRK14121 tRNA (guanine-N(7)-)- 99.2 4.2E-11 9.1E-16 102.1 9.5 94 95-188 121-239 (390)
92 COG2521 Predicted archaeal met 99.2 6.4E-11 1.4E-15 93.2 9.5 113 94-206 132-272 (287)
93 PLN03075 nicotianamine synthas 99.2 1.2E-10 2.6E-15 96.1 11.6 91 95-185 122-234 (296)
94 PF06325 PrmA: Ribosomal prote 99.2 5.6E-11 1.2E-15 98.4 9.4 104 94-204 159-276 (295)
95 TIGR03533 L3_gln_methyl protei 99.2 8.6E-11 1.9E-15 97.3 9.7 106 95-205 120-268 (284)
96 PRK07402 precorrin-6B methylas 99.2 1.3E-10 2.9E-15 91.0 10.0 103 93-200 37-156 (196)
97 PRK00312 pcm protein-L-isoaspa 99.2 9.9E-11 2.1E-15 92.8 9.2 87 93-185 75-176 (212)
98 PRK14966 unknown domain/N5-glu 99.2 1.3E-10 2.7E-15 100.0 10.3 107 95-204 250-398 (423)
99 COG2813 RsmC 16S RNA G1207 met 99.2 1.3E-10 2.9E-15 95.2 9.8 110 93-205 155-286 (300)
100 COG4976 Predicted methyltransf 99.2 6.2E-12 1.3E-16 98.6 1.3 103 84-187 113-228 (287)
101 KOG1271 Methyltransferases [Ge 99.2 1.1E-10 2.5E-15 88.6 7.9 107 97-206 68-200 (227)
102 PRK09328 N5-glutamine S-adenos 99.2 2.4E-10 5.2E-15 93.9 10.5 108 94-205 106-256 (275)
103 COG2242 CobL Precorrin-6B meth 99.2 3.9E-10 8.4E-15 86.4 10.6 107 93-204 31-153 (187)
104 TIGR03704 PrmC_rel_meth putati 99.2 1.9E-10 4E-15 93.6 9.4 106 96-204 86-233 (251)
105 PF05219 DREV: DREV methyltran 99.2 1.4E-10 3E-15 93.2 8.3 88 96-184 94-188 (265)
106 cd02440 AdoMet_MTases S-adenos 99.2 1.3E-10 2.8E-15 79.8 7.1 85 99-183 1-103 (107)
107 TIGR00536 hemK_fam HemK family 99.2 2E-10 4.3E-15 95.2 9.2 103 98-204 116-262 (284)
108 PF05724 TPMT: Thiopurine S-me 99.1 2.7E-11 5.8E-16 96.5 3.7 107 93-200 34-180 (218)
109 TIGR00563 rsmB ribosomal RNA s 99.1 2.3E-10 5E-15 99.8 9.9 109 93-201 235-386 (426)
110 TIGR03438 probable methyltrans 99.1 3.2E-10 7E-15 94.6 9.5 93 95-187 62-180 (301)
111 PRK11805 N5-glutamine S-adenos 99.1 3.9E-10 8.4E-15 94.3 9.2 102 98-204 135-279 (307)
112 PRK14901 16S rRNA methyltransf 99.1 5E-10 1.1E-14 98.0 9.8 109 93-201 249-402 (434)
113 PRK14904 16S rRNA methyltransf 99.1 4.1E-10 9E-15 98.8 9.3 107 94-201 248-395 (445)
114 TIGR00446 nop2p NOL1/NOP2/sun 99.1 3.4E-10 7.3E-15 92.8 7.9 105 93-197 68-212 (264)
115 PRK07580 Mg-protoporphyrin IX 99.1 4.5E-10 9.7E-15 89.8 8.4 82 94-179 61-161 (230)
116 PHA03411 putative methyltransf 99.1 5.6E-10 1.2E-14 91.0 8.7 110 95-205 63-208 (279)
117 COG2519 GCD14 tRNA(1-methylade 99.1 9.6E-10 2.1E-14 87.9 9.8 108 92-206 90-215 (256)
118 PLN02585 magnesium protoporphy 99.1 3.5E-10 7.7E-15 94.7 7.7 83 96-184 144-249 (315)
119 PRK01544 bifunctional N5-gluta 99.1 4.2E-10 9.2E-15 100.0 8.6 105 96-204 138-286 (506)
120 PRK14903 16S rRNA methyltransf 99.1 4.1E-10 8.8E-15 98.3 8.2 108 93-200 234-383 (431)
121 PRK10901 16S rRNA methyltransf 99.1 6.6E-10 1.4E-14 97.0 9.0 109 93-201 241-390 (427)
122 COG2890 HemK Methylase of poly 99.0 8.2E-10 1.8E-14 91.2 8.7 100 99-203 113-254 (280)
123 PLN02232 ubiquinone biosynthes 99.0 4.6E-10 9.9E-15 85.3 6.0 55 132-186 28-83 (160)
124 PRK00811 spermidine synthase; 99.0 8E-10 1.7E-14 91.4 7.9 92 95-186 75-193 (283)
125 PRK13943 protein-L-isoaspartat 99.0 1.5E-09 3.3E-14 91.1 9.5 88 93-185 77-181 (322)
126 PF08704 GCD14: tRNA methyltra 99.0 6.4E-10 1.4E-14 89.9 6.6 109 92-206 36-166 (247)
127 COG2518 Pcm Protein-L-isoaspar 99.0 2.4E-09 5.1E-14 83.8 9.4 89 92-186 68-171 (209)
128 PRK04457 spermidine synthase; 99.0 7.5E-10 1.6E-14 90.6 6.9 92 95-186 65-179 (262)
129 PF01135 PCMT: Protein-L-isoas 99.0 9.4E-10 2E-14 87.0 7.2 89 93-186 69-174 (209)
130 PF03141 Methyltransf_29: Puta 99.0 1.8E-09 4E-14 93.6 8.2 93 95-188 116-223 (506)
131 PRK14902 16S rRNA methyltransf 99.0 2.6E-09 5.6E-14 93.8 9.0 107 94-201 248-397 (444)
132 KOG1499 Protein arginine N-met 99.0 1.8E-09 4E-14 89.8 7.3 92 90-181 54-164 (346)
133 PF01739 CheR: CheR methyltran 98.9 2.1E-09 4.6E-14 84.1 6.9 93 95-187 30-178 (196)
134 PRK03612 spermidine synthase; 98.9 2.8E-09 6.1E-14 95.2 7.1 110 95-204 296-437 (521)
135 smart00650 rADc Ribosomal RNA 98.9 2.9E-09 6.2E-14 81.5 5.8 89 93-184 10-113 (169)
136 PRK11783 rlmL 23S rRNA m(2)G24 98.9 5.5E-09 1.2E-13 96.4 8.5 107 95-204 537-673 (702)
137 PF03291 Pox_MCEL: mRNA cappin 98.9 5.4E-09 1.2E-13 88.1 7.5 92 96-187 62-189 (331)
138 PRK15128 23S rRNA m(5)C1962 me 98.9 1E-08 2.2E-13 88.5 9.0 104 95-199 219-353 (396)
139 KOG2361 Predicted methyltransf 98.9 8.1E-09 1.8E-13 81.8 7.5 88 99-186 74-185 (264)
140 PRK01581 speE spermidine synth 98.9 4.4E-09 9.6E-14 88.9 6.3 92 95-186 149-270 (374)
141 PF02390 Methyltransf_4: Putat 98.9 8.2E-09 1.8E-13 80.9 7.3 104 96-201 17-148 (195)
142 PF06080 DUF938: Protein of un 98.8 2.5E-08 5.4E-13 77.9 9.7 89 95-183 23-140 (204)
143 PLN02781 Probable caffeoyl-CoA 98.8 2.2E-08 4.7E-13 80.7 9.4 86 95-182 67-176 (234)
144 TIGR00417 speE spermidine synt 98.8 1.5E-08 3.2E-13 83.4 8.2 91 95-185 71-187 (270)
145 KOG2899 Predicted methyltransf 98.8 9.9E-09 2.1E-13 81.4 6.1 90 94-183 56-208 (288)
146 PLN02672 methionine S-methyltr 98.8 1.7E-08 3.7E-13 95.8 8.5 106 97-205 119-297 (1082)
147 PF02527 GidB: rRNA small subu 98.8 3E-08 6.4E-13 76.9 8.4 119 82-204 33-168 (184)
148 PHA03412 putative methyltransf 98.8 9.3E-09 2E-13 82.1 5.7 83 96-179 49-158 (241)
149 PLN02366 spermidine synthase 98.8 1.8E-08 3.8E-13 84.3 7.6 90 95-184 90-206 (308)
150 KOG2940 Predicted methyltransf 98.8 6.1E-09 1.3E-13 82.0 4.3 91 95-185 71-175 (325)
151 PRK10611 chemotaxis methyltran 98.8 2.6E-08 5.6E-13 82.3 8.1 92 96-187 115-265 (287)
152 COG1352 CheR Methylase of chem 98.8 7.1E-08 1.5E-12 78.8 10.4 92 96-187 96-244 (268)
153 TIGR00478 tly hemolysin TlyA f 98.8 1.6E-08 3.4E-13 81.0 6.4 83 95-185 74-172 (228)
154 COG1041 Predicted DNA modifica 98.8 3.4E-08 7.3E-13 82.7 8.1 102 83-185 184-311 (347)
155 PF10294 Methyltransf_16: Puta 98.7 5.4E-08 1.2E-12 74.8 8.6 107 93-201 42-172 (173)
156 PF05891 Methyltransf_PK: AdoM 98.7 2.6E-08 5.7E-13 78.3 6.9 125 80-204 37-194 (218)
157 PF11968 DUF3321: Putative met 98.7 1.2E-07 2.6E-12 74.5 10.4 109 96-206 51-176 (219)
158 PF00891 Methyltransf_2: O-met 98.7 1.1E-07 2.4E-12 76.7 10.6 94 90-186 94-201 (241)
159 COG0293 FtsJ 23S rRNA methylas 98.7 1.4E-07 3E-12 73.8 10.5 129 67-202 23-179 (205)
160 KOG1975 mRNA cap methyltransfe 98.7 4E-08 8.6E-13 81.0 7.3 94 94-187 115-240 (389)
161 KOG2904 Predicted methyltransf 98.7 3.3E-07 7E-12 74.1 10.7 92 95-186 147-287 (328)
162 PRK13168 rumA 23S rRNA m(5)U19 98.7 8.5E-08 1.8E-12 84.2 8.0 90 93-186 294-402 (443)
163 PF01728 FtsJ: FtsJ-like methy 98.6 3.7E-08 8E-13 76.1 4.7 92 96-187 23-142 (181)
164 PRK10909 rsmD 16S rRNA m(2)G96 98.6 8.2E-08 1.8E-12 75.4 6.0 92 95-186 52-161 (199)
165 COG4122 Predicted O-methyltran 98.6 2.3E-07 5E-12 73.5 7.7 88 94-183 57-165 (219)
166 KOG1500 Protein arginine N-met 98.6 1.8E-07 3.8E-12 77.7 7.0 109 95-204 176-305 (517)
167 PRK03522 rumB 23S rRNA methylu 98.6 1.7E-07 3.7E-12 78.7 7.0 88 96-186 173-276 (315)
168 PLN02476 O-methyltransferase 98.5 5.4E-07 1.2E-11 74.1 9.2 88 94-183 116-227 (278)
169 PF01596 Methyltransf_3: O-met 98.5 2.7E-07 5.8E-12 72.8 6.9 87 95-183 44-154 (205)
170 KOG1661 Protein-L-isoaspartate 98.5 2E-07 4.4E-12 72.5 5.8 101 79-186 67-195 (237)
171 PF07942 N2227: N2227-like pro 98.5 5E-07 1.1E-11 73.8 8.4 127 77-205 33-236 (270)
172 PRK11933 yebU rRNA (cytosine-C 98.5 7E-07 1.5E-11 78.6 9.5 104 94-197 111-255 (470)
173 TIGR00479 rumA 23S rRNA (uraci 98.5 3.5E-07 7.6E-12 80.0 7.3 89 93-184 289-396 (431)
174 PRK00274 ksgA 16S ribosomal RN 98.5 2.3E-07 5E-12 76.4 5.6 62 93-155 39-112 (272)
175 COG0220 Predicted S-adenosylme 98.5 3.3E-07 7.1E-12 73.3 6.2 90 98-187 50-167 (227)
176 KOG1269 SAM-dependent methyltr 98.5 1.1E-07 2.3E-12 81.0 3.5 91 94-184 108-215 (364)
177 PF05185 PRMT5: PRMT5 arginine 98.5 7E-07 1.5E-11 78.3 8.5 84 97-181 187-294 (448)
178 PRK14896 ksgA 16S ribosomal RN 98.5 3.8E-07 8.3E-12 74.5 6.3 60 93-155 26-98 (258)
179 PLN02823 spermine synthase 98.4 5.9E-07 1.3E-11 75.9 7.1 91 95-185 102-221 (336)
180 PF01269 Fibrillarin: Fibrilla 98.4 3.9E-07 8.5E-12 71.8 5.5 114 72-186 49-180 (229)
181 KOG3987 Uncharacterized conser 98.4 5.6E-08 1.2E-12 75.5 0.5 110 95-205 111-254 (288)
182 COG3963 Phospholipid N-methylt 98.4 1.8E-06 3.9E-11 65.0 8.1 99 88-186 40-158 (194)
183 COG2263 Predicted RNA methylas 98.4 7.9E-07 1.7E-11 68.3 6.1 59 94-155 43-115 (198)
184 COG1092 Predicted SAM-dependen 98.4 1.4E-06 3E-11 74.9 8.0 93 96-188 217-340 (393)
185 PF01170 UPF0020: Putative RNA 98.4 1.4E-06 3.1E-11 67.3 7.0 95 89-184 21-150 (179)
186 TIGR00755 ksgA dimethyladenosi 98.3 2.3E-06 5.1E-11 69.6 8.4 75 93-172 26-116 (253)
187 PRK01544 bifunctional N5-gluta 98.3 9.7E-07 2.1E-11 78.7 6.6 107 95-203 346-479 (506)
188 PRK04148 hypothetical protein; 98.3 2.7E-06 5.9E-11 62.3 7.6 76 95-176 15-100 (134)
189 KOG3191 Predicted N6-DNA-methy 98.3 2.5E-06 5.5E-11 65.1 7.4 107 95-204 42-186 (209)
190 KOG1331 Predicted methyltransf 98.3 1.8E-06 3.9E-11 70.3 6.8 90 95-187 44-146 (293)
191 COG0357 GidB Predicted S-adeno 98.3 3.9E-06 8.5E-11 66.4 8.3 102 95-200 65-184 (215)
192 TIGR02085 meth_trns_rumB 23S r 98.3 1.7E-06 3.8E-11 74.4 6.7 98 96-198 233-346 (374)
193 PLN02589 caffeoyl-CoA O-methyl 98.3 2.5E-06 5.3E-11 69.2 7.1 86 95-182 78-188 (247)
194 COG1889 NOP1 Fibrillarin-like 98.3 4.3E-06 9.2E-11 64.9 7.9 114 73-187 53-183 (231)
195 TIGR00095 RNA methyltransferas 98.3 2.2E-06 4.8E-11 66.9 6.2 91 95-185 48-160 (189)
196 PRK11760 putative 23S rRNA C24 98.3 2.5E-05 5.4E-10 65.7 12.7 89 93-185 208-306 (357)
197 KOG2352 Predicted spermine/spe 98.2 6.2E-06 1.3E-10 71.7 9.0 91 95-185 46-162 (482)
198 KOG4589 Cell division protein 98.2 1.3E-05 2.8E-10 61.6 9.5 114 91-204 64-206 (232)
199 PF08123 DOT1: Histone methyla 98.2 1.6E-06 3.5E-11 68.4 3.7 90 92-181 38-155 (205)
200 COG0421 SpeE Spermidine syntha 98.2 1.2E-05 2.6E-10 66.3 8.8 89 98-186 78-192 (282)
201 PTZ00338 dimethyladenosine tra 98.2 2.7E-06 5.9E-11 70.8 4.9 62 91-155 31-108 (294)
202 COG4262 Predicted spermidine s 98.2 7.5E-06 1.6E-10 68.9 7.4 111 94-204 287-429 (508)
203 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 4.7E-06 1E-10 67.7 6.0 110 95-204 55-232 (256)
204 PRK00536 speE spermidine synth 98.1 4.2E-06 9.1E-11 68.3 5.4 88 95-187 71-174 (262)
205 PF10672 Methyltrans_SAM: S-ad 98.1 4.1E-06 8.9E-11 69.2 5.2 104 95-199 122-252 (286)
206 PRK04338 N(2),N(2)-dimethylgua 98.1 4E-06 8.6E-11 72.2 5.3 87 97-186 58-160 (382)
207 COG0500 SmtA SAM-dependent met 98.1 2.9E-05 6.3E-10 56.1 9.0 88 100-188 52-159 (257)
208 PRK11727 23S rRNA mA1618 methy 98.1 1.5E-05 3.2E-10 67.0 8.2 60 96-155 114-196 (321)
209 PF12147 Methyltransf_20: Puta 98.1 6.6E-05 1.4E-09 61.6 11.6 106 93-199 132-263 (311)
210 PF01564 Spermine_synth: Sperm 98.1 4.9E-06 1.1E-10 67.6 5.1 93 95-187 75-194 (246)
211 KOG3420 Predicted RNA methylas 98.1 1.8E-06 4E-11 63.6 2.2 61 95-155 47-121 (185)
212 KOG2915 tRNA(1-methyladenosine 98.1 9.7E-06 2.1E-10 65.6 6.5 110 93-207 102-231 (314)
213 COG2520 Predicted methyltransf 98.1 2.5E-05 5.5E-10 65.9 9.1 105 95-202 187-311 (341)
214 COG0144 Sun tRNA and rRNA cyto 98.1 3.7E-05 8.1E-10 65.7 10.1 109 93-201 153-306 (355)
215 COG1189 Predicted rRNA methyla 98.0 0.00012 2.6E-09 58.4 11.8 92 93-186 76-180 (245)
216 PF02475 Met_10: Met-10+ like- 98.0 7.5E-06 1.6E-10 64.3 4.2 83 94-180 99-198 (200)
217 PF03602 Cons_hypoth95: Conser 98.0 3.5E-06 7.5E-11 65.4 2.1 93 95-187 41-156 (183)
218 PF02384 N6_Mtase: N-6 DNA Met 97.9 1.8E-05 3.9E-10 66.2 6.1 108 93-200 43-202 (311)
219 PF09243 Rsm22: Mitochondrial 97.9 5.2E-05 1.1E-09 62.5 8.6 119 83-203 20-160 (274)
220 PF03141 Methyltransf_29: Puta 97.9 3.9E-05 8.5E-10 67.1 7.9 123 72-200 344-480 (506)
221 KOG0820 Ribosomal RNA adenine 97.9 4E-05 8.7E-10 62.2 6.7 71 82-155 44-130 (315)
222 KOG1663 O-methyltransferase [S 97.9 0.00014 3E-09 57.7 9.6 87 95-183 72-182 (237)
223 COG0030 KsgA Dimethyladenosine 97.9 4.2E-05 9.1E-10 62.2 6.6 70 85-155 19-102 (259)
224 TIGR02143 trmA_only tRNA (urac 97.9 3E-05 6.5E-10 66.2 5.9 100 98-204 199-329 (353)
225 COG3897 Predicted methyltransf 97.8 5.2E-05 1.1E-09 58.7 6.2 94 93-190 76-184 (218)
226 TIGR00308 TRM1 tRNA(guanine-26 97.8 1.4E-05 3E-10 68.6 3.4 86 97-185 45-148 (374)
227 COG4627 Uncharacterized protei 97.8 2.3E-05 5E-10 58.4 3.2 48 140-187 39-89 (185)
228 PRK05031 tRNA (uracil-5-)-meth 97.7 6.2E-05 1.3E-09 64.5 5.9 96 97-199 207-333 (362)
229 PF13679 Methyltransf_32: Meth 97.7 0.0004 8.7E-09 51.4 9.2 52 81-132 9-66 (141)
230 KOG1596 Fibrillarin and relate 97.7 0.00024 5.3E-09 56.8 8.2 115 72-187 132-264 (317)
231 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 2.6E-05 5.7E-10 64.6 2.5 105 93-197 82-232 (283)
232 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00026 5.6E-09 65.8 8.6 93 95-187 189-350 (702)
233 COG4076 Predicted RNA methylas 97.6 0.00011 2.4E-09 56.6 5.1 82 97-181 33-132 (252)
234 KOG3178 Hydroxyindole-O-methyl 97.6 0.00047 1E-08 58.0 8.9 87 95-185 176-276 (342)
235 KOG1709 Guanidinoacetate methy 97.6 0.00039 8.5E-09 54.7 7.8 93 95-187 100-209 (271)
236 COG0742 N6-adenine-specific me 97.6 0.00018 4E-09 55.6 5.9 92 95-186 42-156 (187)
237 KOG1122 tRNA and rRNA cytosine 97.5 0.00048 1E-08 59.1 8.3 107 95-202 240-390 (460)
238 TIGR03439 methyl_EasF probable 97.5 0.00049 1.1E-08 57.9 7.8 93 95-187 75-200 (319)
239 COG4798 Predicted methyltransf 97.5 0.00046 1E-08 53.5 6.9 91 93-184 45-166 (238)
240 KOG2798 Putative trehalase [Ca 97.4 0.00024 5.2E-09 58.8 4.7 111 69-180 119-292 (369)
241 KOG1099 SAM-dependent methyltr 97.3 0.00049 1.1E-08 54.6 5.6 90 95-184 40-163 (294)
242 KOG3201 Uncharacterized conser 97.3 7.7E-05 1.7E-09 56.1 0.7 108 96-204 29-159 (201)
243 TIGR02987 met_A_Alw26 type II 97.3 0.00058 1.3E-08 61.4 6.4 109 96-204 31-219 (524)
244 PF00398 RrnaAD: Ribosomal RNA 97.3 0.00058 1.3E-08 55.9 5.7 82 93-177 27-124 (262)
245 PF13578 Methyltransf_24: Meth 97.2 9.5E-05 2.1E-09 51.8 -0.1 83 101-183 1-104 (106)
246 PF09445 Methyltransf_15: RNA 97.1 0.00074 1.6E-08 51.3 4.3 56 99-155 2-76 (163)
247 COG0116 Predicted N6-adenine-s 97.1 0.0028 6.1E-08 54.2 8.2 101 86-186 181-346 (381)
248 COG2265 TrmA SAM-dependent met 96.9 0.002 4.4E-08 56.4 5.7 91 93-186 290-398 (432)
249 PF03269 DUF268: Caenorhabditi 96.8 0.0053 1.1E-07 46.3 6.7 91 97-187 2-114 (177)
250 PF04816 DUF633: Family of unk 96.8 0.0028 6.1E-08 50.0 5.6 99 100-204 1-117 (205)
251 PF05958 tRNA_U5-meth_tr: tRNA 96.8 0.0026 5.7E-08 54.4 5.5 33 99-132 199-231 (352)
252 KOG2793 Putative N2,N2-dimethy 96.8 0.0068 1.5E-07 49.1 7.6 101 96-197 86-211 (248)
253 PF03059 NAS: Nicotianamine sy 96.6 0.0064 1.4E-07 50.1 6.5 88 97-186 121-230 (276)
254 TIGR00006 S-adenosyl-methyltra 96.6 0.012 2.6E-07 49.2 8.2 40 93-132 17-57 (305)
255 PF04672 Methyltransf_19: S-ad 96.6 0.012 2.5E-07 48.2 7.8 106 96-202 68-210 (267)
256 PRK00050 16S rRNA m(4)C1402 me 96.6 0.0024 5.3E-08 53.2 3.7 40 93-132 16-57 (296)
257 KOG3115 Methyltransferase-like 96.5 0.0066 1.4E-07 47.5 5.6 106 95-202 59-199 (249)
258 KOG2920 Predicted methyltransf 96.5 0.0034 7.5E-08 51.4 4.3 95 92-186 112-236 (282)
259 PF04989 CmcI: Cephalosporin h 96.3 0.057 1.2E-06 42.6 9.9 87 96-183 32-146 (206)
260 KOG2187 tRNA uracil-5-methyltr 96.2 0.0071 1.5E-07 53.4 4.5 41 92-133 379-419 (534)
261 KOG2198 tRNA cytosine-5-methyl 96.1 0.029 6.3E-07 47.7 7.8 102 93-194 152-306 (375)
262 TIGR01444 fkbM_fam methyltrans 96.1 0.0061 1.3E-07 44.7 3.4 35 99-133 1-36 (143)
263 COG1064 AdhP Zn-dependent alco 95.9 0.027 5.9E-07 47.7 6.9 88 92-186 162-261 (339)
264 COG5459 Predicted rRNA methyla 95.9 0.017 3.7E-07 48.9 5.3 92 96-187 113-228 (484)
265 PF06859 Bin3: Bicoid-interact 95.9 0.0081 1.8E-07 42.3 2.9 37 148-184 1-44 (110)
266 cd00315 Cyt_C5_DNA_methylase C 95.5 0.069 1.5E-06 44.0 7.7 104 99-204 2-136 (275)
267 KOG0822 Protein kinase inhibit 95.5 0.071 1.5E-06 47.5 7.7 83 97-180 368-474 (649)
268 COG2384 Predicted SAM-dependen 95.4 0.25 5.5E-06 39.2 10.0 104 95-204 15-136 (226)
269 PF03492 Methyltransf_7: SAM d 95.4 0.11 2.3E-06 44.2 8.5 96 93-188 13-187 (334)
270 PF07091 FmrO: Ribosomal RNA m 95.2 0.029 6.4E-07 45.3 4.4 78 81-161 92-184 (251)
271 PRK13699 putative methylase; P 95.1 0.038 8.2E-07 44.3 4.8 68 134-204 4-89 (227)
272 KOG0024 Sorbitol dehydrogenase 95.1 0.11 2.3E-06 43.7 7.4 106 91-201 164-290 (354)
273 PF07757 AdoMet_MTase: Predict 95.1 0.058 1.2E-06 37.9 4.9 35 95-130 57-91 (112)
274 PLN02668 indole-3-acetate carb 95.0 0.16 3.4E-06 44.0 8.3 19 96-114 63-81 (386)
275 PF06962 rRNA_methylase: Putat 94.8 0.031 6.8E-07 41.3 3.1 69 121-189 1-97 (140)
276 KOG2671 Putative RNA methylase 94.4 0.1 2.2E-06 44.1 5.6 95 91-186 203-356 (421)
277 KOG2730 Methylase [General fun 94.4 0.042 9E-07 43.7 3.1 59 96-155 94-172 (263)
278 cd08283 FDH_like_1 Glutathione 94.3 0.14 3.1E-06 44.0 6.8 94 91-184 179-306 (386)
279 PRK11524 putative methyltransf 94.3 0.069 1.5E-06 44.2 4.4 55 132-186 9-82 (284)
280 PRK10742 putative methyltransf 94.2 0.068 1.5E-06 43.3 4.0 37 93-130 83-121 (250)
281 PHA01634 hypothetical protein 94.0 0.077 1.7E-06 38.6 3.7 38 95-132 27-64 (156)
282 PF11312 DUF3115: Protein of u 93.9 0.31 6.7E-06 40.8 7.4 90 97-186 87-244 (315)
283 PF01795 Methyltransf_5: MraW 93.7 0.19 4.1E-06 42.2 6.0 40 93-132 17-57 (310)
284 KOG1098 Putative SAM-dependent 93.5 0.28 6.2E-06 44.6 7.0 91 90-180 38-154 (780)
285 PF10354 DUF2431: Domain of un 93.4 0.86 1.9E-05 34.7 8.7 69 136-204 59-145 (166)
286 KOG4058 Uncharacterized conser 93.4 0.22 4.7E-06 37.3 5.1 86 94-183 70-171 (199)
287 KOG1562 Spermidine synthase [A 93.3 0.1 2.2E-06 43.2 3.7 90 95-184 120-236 (337)
288 PF04445 SAM_MT: Putative SAM- 93.2 0.067 1.5E-06 43.0 2.5 60 98-158 77-161 (234)
289 COG1867 TRM1 N2,N2-dimethylgua 93.2 0.085 1.8E-06 45.0 3.1 87 97-186 53-156 (380)
290 COG2933 Predicted SAM-dependen 93.2 0.56 1.2E-05 38.5 7.6 90 83-176 198-295 (358)
291 PRK09880 L-idonate 5-dehydroge 93.1 0.37 8E-06 40.7 7.0 85 95-184 168-266 (343)
292 PF01861 DUF43: Protein of unk 93.1 0.94 2E-05 36.6 8.8 110 95-205 43-172 (243)
293 COG0275 Predicted S-adenosylme 93.1 0.85 1.8E-05 38.0 8.8 41 92-132 19-61 (314)
294 KOG3924 Putative protein methy 93.0 0.24 5.2E-06 42.6 5.6 101 81-181 177-305 (419)
295 COG1063 Tdh Threonine dehydrog 92.9 0.15 3.4E-06 43.4 4.4 87 95-186 167-271 (350)
296 PRK09424 pntA NAD(P) transhydr 92.8 0.33 7.2E-06 43.6 6.5 90 95-185 163-286 (509)
297 PF03686 UPF0146: Uncharacteri 92.8 1 2.2E-05 32.6 7.8 61 95-156 12-78 (127)
298 PF05971 Methyltransf_10: Prot 92.4 0.43 9.3E-06 39.9 6.2 35 97-132 103-139 (299)
299 COG1255 Uncharacterized protei 92.2 2 4.3E-05 30.7 8.4 76 95-176 12-93 (129)
300 cd08254 hydroxyacyl_CoA_DH 6-h 92.2 1.6 3.6E-05 36.1 9.7 89 90-184 159-263 (338)
301 PF02005 TRM: N2,N2-dimethylgu 91.6 0.11 2.5E-06 44.8 2.0 89 95-186 48-156 (377)
302 PF05206 TRM13: Methyltransfer 91.4 0.56 1.2E-05 38.4 5.7 48 83-130 5-58 (259)
303 PRK01747 mnmC bifunctional tRN 91.3 0.75 1.6E-05 42.7 7.3 104 95-204 56-220 (662)
304 cd05188 MDR Medium chain reduc 90.8 2.1 4.6E-05 34.0 8.7 92 90-187 128-235 (271)
305 PF01555 N6_N4_Mtase: DNA meth 90.7 0.26 5.7E-06 38.5 3.2 38 93-131 188-225 (231)
306 PF10237 N6-adenineMlase: Prob 89.9 4.6 0.0001 30.6 9.2 92 95-187 24-126 (162)
307 KOG1253 tRNA methyltransferase 89.7 0.094 2E-06 46.3 -0.1 89 95-186 108-218 (525)
308 PRK11524 putative methyltransf 89.2 0.39 8.4E-06 39.8 3.2 39 94-133 206-244 (284)
309 KOG1209 1-Acyl dihydroxyaceton 89.1 4.8 0.0001 32.3 8.9 60 95-155 5-88 (289)
310 TIGR01202 bchC 2-desacetyl-2-h 89.0 1.2 2.7E-05 36.9 6.2 83 95-184 143-231 (308)
311 TIGR03451 mycoS_dep_FDH mycoth 88.8 2.1 4.6E-05 36.3 7.5 88 91-183 171-275 (358)
312 COG0286 HsdM Type I restrictio 88.7 3 6.6E-05 37.4 8.6 93 95-187 185-329 (489)
313 PRK13699 putative methylase; P 87.0 0.87 1.9E-05 36.5 3.8 40 93-133 160-199 (227)
314 PF02636 Methyltransf_28: Puta 87.0 2.2 4.7E-05 34.6 6.2 37 95-131 17-62 (252)
315 cd08237 ribitol-5-phosphate_DH 86.9 2.1 4.5E-05 36.1 6.3 89 94-184 161-256 (341)
316 cd08234 threonine_DH_like L-th 86.7 2.2 4.7E-05 35.5 6.3 89 91-184 154-257 (334)
317 KOG2352 Predicted spermine/spe 86.6 1.1 2.4E-05 39.7 4.5 100 95-194 294-426 (482)
318 PF00107 ADH_zinc_N: Zinc-bind 86.3 0.55 1.2E-05 33.4 2.2 75 107-187 2-92 (130)
319 cd08232 idonate-5-DH L-idonate 85.8 5.5 0.00012 33.2 8.3 84 96-184 165-262 (339)
320 PRK05708 2-dehydropantoate 2-r 85.4 7.8 0.00017 32.3 8.9 102 97-203 2-121 (305)
321 PF00145 DNA_methylase: C-5 cy 85.2 2 4.4E-05 35.6 5.4 103 99-204 2-135 (335)
322 KOG1501 Arginine N-methyltrans 85.0 0.68 1.5E-05 40.7 2.3 38 96-133 66-103 (636)
323 cd08281 liver_ADH_like1 Zinc-d 84.6 4.9 0.00011 34.2 7.6 89 91-184 186-290 (371)
324 cd08230 glucose_DH Glucose deh 84.6 2.5 5.5E-05 35.7 5.7 85 94-184 170-269 (355)
325 TIGR00561 pntA NAD(P) transhyd 84.5 1.5 3.3E-05 39.4 4.4 91 95-186 162-286 (511)
326 PF06460 NSP13: Coronavirus NS 84.5 3.7 8.1E-05 33.6 6.2 109 94-203 59-189 (299)
327 PF11599 AviRa: RRNA methyltra 83.8 0.81 1.7E-05 36.4 2.1 53 81-133 36-91 (246)
328 COG0270 Dcm Site-specific DNA 83.8 3 6.6E-05 35.2 5.8 107 96-204 2-140 (328)
329 TIGR02822 adh_fam_2 zinc-bindi 83.3 6.2 0.00013 33.1 7.5 85 92-184 161-254 (329)
330 PF05430 Methyltransf_30: S-ad 83.2 2 4.2E-05 31.1 3.8 67 132-204 33-104 (124)
331 COG3510 CmcI Cephalosporin hyd 82.9 8.3 0.00018 30.3 7.3 90 95-184 68-180 (237)
332 KOG2539 Mitochondrial/chloropl 82.9 1.8 4E-05 38.2 4.1 92 95-186 199-317 (491)
333 cd05278 FDH_like Formaldehyde 82.8 3.5 7.6E-05 34.4 5.8 87 92-183 163-266 (347)
334 KOG2651 rRNA adenine N-6-methy 82.6 3.4 7.4E-05 35.7 5.5 35 95-130 152-187 (476)
335 PF11899 DUF3419: Protein of u 81.9 2.4 5.3E-05 36.7 4.5 51 134-184 279-334 (380)
336 PLN02206 UDP-glucuronate decar 81.7 21 0.00046 31.5 10.5 57 95-155 117-190 (442)
337 COG0677 WecC UDP-N-acetyl-D-ma 79.9 7.5 0.00016 33.9 6.7 101 98-201 10-145 (436)
338 PRK06249 2-dehydropantoate 2-r 79.7 13 0.00027 31.1 8.1 105 96-205 4-125 (313)
339 cd08255 2-desacetyl-2-hydroxye 79.1 7.5 0.00016 31.3 6.4 88 92-184 93-190 (277)
340 PTZ00357 methyltransferase; Pr 78.7 6.5 0.00014 36.9 6.2 81 98-179 702-830 (1072)
341 PLN02740 Alcohol dehydrogenase 78.7 12 0.00026 32.1 7.8 88 91-183 193-299 (381)
342 KOG1227 Putative methyltransfe 78.6 0.87 1.9E-05 38.0 0.7 88 95-186 193-297 (351)
343 cd05285 sorbitol_DH Sorbitol d 78.5 15 0.00032 30.7 8.3 89 90-183 156-264 (343)
344 PRK06522 2-dehydropantoate 2-r 78.1 7.2 0.00016 32.1 6.1 99 99-202 2-116 (304)
345 PF02254 TrkA_N: TrkA-N domain 78.0 9.1 0.0002 26.5 5.8 80 105-186 4-98 (116)
346 PF05711 TylF: Macrocin-O-meth 77.8 15 0.00032 30.0 7.6 38 95-132 73-116 (248)
347 PF11899 DUF3419: Protein of u 77.2 3.9 8.4E-05 35.5 4.3 39 93-132 32-70 (380)
348 COG4301 Uncharacterized conser 76.3 20 0.00044 29.4 7.8 93 95-187 77-196 (321)
349 COG1893 ApbA Ketopantoate redu 76.2 11 0.00025 31.6 6.8 100 98-202 1-117 (307)
350 TIGR03366 HpnZ_proposed putati 75.9 9 0.00019 31.2 6.1 85 95-184 119-218 (280)
351 COG0686 Ald Alanine dehydrogen 75.2 3.4 7.5E-05 34.8 3.3 88 97-185 168-269 (371)
352 PF01555 N6_N4_Mtase: DNA meth 75.0 3.7 8E-05 31.9 3.4 39 162-200 34-74 (231)
353 PRK03659 glutathione-regulated 74.9 6.4 0.00014 36.3 5.3 82 98-184 401-498 (601)
354 cd00401 AdoHcyase S-adenosyl-L 74.4 8 0.00017 33.9 5.6 80 94-184 199-289 (413)
355 cd08261 Zn_ADH7 Alcohol dehydr 74.3 14 0.00031 30.7 7.0 87 91-183 154-257 (337)
356 PLN03154 putative allyl alcoho 74.3 12 0.00025 31.7 6.5 86 91-183 153-257 (348)
357 cd08278 benzyl_alcohol_DH Benz 74.2 10 0.00022 32.2 6.2 88 92-184 182-285 (365)
358 cd08245 CAD Cinnamyl alcohol d 73.9 11 0.00023 31.2 6.2 87 92-184 158-256 (330)
359 TIGR00936 ahcY adenosylhomocys 73.7 8.6 0.00019 33.7 5.6 96 94-200 192-298 (406)
360 TIGR02825 B4_12hDH leukotriene 73.7 26 0.00055 29.0 8.4 86 91-183 133-236 (325)
361 COG1568 Predicted methyltransf 73.2 4.3 9.4E-05 33.7 3.3 108 96-205 152-282 (354)
362 PLN02166 dTDP-glucose 4,6-dehy 72.7 67 0.0015 28.3 14.6 57 95-155 118-191 (436)
363 cd08239 THR_DH_like L-threonin 72.6 14 0.00031 30.7 6.6 87 93-184 160-262 (339)
364 PLN02586 probable cinnamyl alc 72.6 18 0.0004 30.7 7.4 84 94-183 181-277 (360)
365 cd08293 PTGR2 Prostaglandin re 72.4 7.7 0.00017 32.4 4.9 85 93-183 149-253 (345)
366 cd08285 NADP_ADH NADP(H)-depen 72.2 14 0.0003 31.0 6.5 87 92-183 162-265 (351)
367 cd08236 sugar_DH NAD(P)-depend 71.6 7.6 0.00016 32.4 4.7 88 92-184 155-258 (343)
368 TIGR02818 adh_III_F_hyde S-(hy 71.6 11 0.00024 32.0 5.8 89 91-184 180-287 (368)
369 PRK00050 16S rRNA m(4)C1402 me 71.5 6 0.00013 33.1 4.0 42 157-200 208-250 (296)
370 PRK12480 D-lactate dehydrogena 71.2 17 0.00038 30.8 6.8 104 96-204 145-253 (330)
371 PF03721 UDPG_MGDP_dh_N: UDP-g 71.0 5.2 0.00011 30.9 3.3 100 99-201 2-137 (185)
372 PRK10309 galactitol-1-phosphat 70.8 17 0.00037 30.4 6.7 87 92-183 156-259 (347)
373 PLN02827 Alcohol dehydrogenase 70.0 9.8 0.00021 32.6 5.1 87 92-183 189-294 (378)
374 COG3129 Predicted SAM-dependen 69.7 6.1 0.00013 32.0 3.4 62 95-157 77-162 (292)
375 cd08300 alcohol_DH_class_III c 68.5 23 0.0005 30.1 7.1 87 92-183 182-287 (368)
376 KOG2078 tRNA modification enzy 68.3 1.4 3.1E-05 38.5 -0.4 46 93-139 246-291 (495)
377 cd08294 leukotriene_B4_DH_like 68.0 46 0.001 27.3 8.7 86 91-183 138-240 (329)
378 cd08277 liver_alcohol_DH_like 67.3 29 0.00063 29.4 7.5 89 91-184 179-286 (365)
379 cd08231 MDR_TM0436_like Hypoth 66.9 64 0.0014 27.1 9.5 85 93-184 174-280 (361)
380 TIGR00872 gnd_rel 6-phosphoglu 66.5 9.1 0.0002 31.8 4.1 99 99-203 2-111 (298)
381 TIGR03201 dearomat_had 6-hydro 66.2 11 0.00023 31.8 4.6 87 92-184 162-272 (349)
382 TIGR00675 dcm DNA-methyltransf 66.1 3.9 8.3E-05 34.4 1.8 103 100-204 1-133 (315)
383 KOG0821 Predicted ribosomal RN 65.7 54 0.0012 26.5 7.9 43 90-132 44-86 (326)
384 COG1565 Uncharacterized conser 64.7 15 0.00032 31.7 4.9 47 84-130 65-120 (370)
385 PLN02494 adenosylhomocysteinas 63.4 19 0.00042 32.2 5.6 94 95-198 252-355 (477)
386 PRK05396 tdh L-threonine 3-deh 63.3 29 0.00063 28.9 6.7 85 95-184 162-263 (341)
387 cd08295 double_bond_reductase_ 63.2 25 0.00055 29.3 6.3 86 91-183 146-250 (338)
388 PRK12921 2-dehydropantoate 2-r 62.9 82 0.0018 25.8 9.2 98 99-202 2-118 (305)
389 PF12692 Methyltransf_17: S-ad 62.2 17 0.00037 27.3 4.3 47 95-141 27-82 (160)
390 COG1062 AdhC Zn-dependent alco 62.0 38 0.00082 29.1 6.8 88 92-184 181-285 (366)
391 cd08279 Zn_ADH_class_III Class 61.8 65 0.0014 27.2 8.6 89 91-184 177-282 (363)
392 PRK03562 glutathione-regulated 61.7 16 0.00034 33.9 5.0 80 97-181 400-495 (621)
393 PRK05786 fabG 3-ketoacyl-(acyl 60.3 53 0.0012 25.5 7.4 89 96-186 4-137 (238)
394 PF11253 DUF3052: Protein of u 59.9 37 0.00079 24.7 5.6 60 146-205 43-105 (127)
395 cd08301 alcohol_DH_plants Plan 59.8 49 0.0011 28.0 7.5 86 92-184 183-289 (369)
396 PRK10669 putative cation:proto 59.8 23 0.00049 32.3 5.7 82 98-184 418-515 (558)
397 KOG2015 NEDD8-activating compl 59.7 19 0.00042 30.6 4.7 77 98-178 41-157 (422)
398 PF08139 LPAM_1: Prokaryotic m 59.4 16 0.00035 18.6 2.6 17 6-22 4-20 (25)
399 TIGR02819 fdhA_non_GSH formald 58.2 57 0.0012 28.2 7.7 93 92-184 181-299 (393)
400 TIGR00692 tdh L-threonine 3-de 57.9 37 0.00079 28.3 6.3 86 94-184 159-261 (340)
401 cd08233 butanediol_DH_like (2R 57.8 64 0.0014 26.9 7.8 89 91-184 167-272 (351)
402 cd05281 TDH Threonine dehydrog 57.8 48 0.001 27.6 7.0 85 94-183 161-261 (341)
403 KOG2811 Uncharacterized conser 57.6 34 0.00074 29.6 5.9 46 85-130 170-220 (420)
404 cd08263 Zn_ADH10 Alcohol dehyd 57.4 63 0.0014 27.2 7.8 88 92-184 183-287 (367)
405 PRK15469 ghrA bifunctional gly 57.4 91 0.002 26.2 8.5 104 96-204 135-245 (312)
406 COG0604 Qor NADPH:quinone redu 57.2 42 0.00091 28.3 6.5 93 88-187 134-244 (326)
407 PRK11064 wecC UDP-N-acetyl-D-m 56.7 45 0.00097 29.2 6.8 100 98-199 4-133 (415)
408 PF03514 GRAS: GRAS domain fam 56.7 23 0.0005 30.6 4.9 34 95-128 109-150 (374)
409 PRK05476 S-adenosyl-L-homocyst 56.6 33 0.00071 30.3 5.9 92 95-197 210-312 (425)
410 PF07090 DUF1355: Protein of u 55.3 16 0.00035 28.1 3.4 40 147-186 66-110 (177)
411 cd08282 PFDH_like Pseudomonas 55.3 82 0.0018 26.8 8.1 92 92-183 172-284 (375)
412 PRK00094 gpsA NAD(P)H-dependen 55.1 10 0.00022 31.6 2.5 85 99-188 3-109 (325)
413 PRK07417 arogenate dehydrogena 54.0 20 0.00043 29.4 4.0 77 99-179 2-86 (279)
414 PRK06701 short chain dehydroge 53.5 54 0.0012 26.8 6.5 88 96-185 45-182 (290)
415 cd08240 6_hydroxyhexanoate_dh_ 53.2 1E+02 0.0022 25.7 8.3 86 93-183 172-273 (350)
416 PRK07502 cyclohexadienyl dehyd 53.1 26 0.00056 29.1 4.6 82 98-181 7-97 (307)
417 cd08286 FDH_like_ADH2 formalde 52.9 1.2E+02 0.0027 25.1 8.7 85 92-183 162-265 (345)
418 PRK06487 glycerate dehydrogena 52.9 51 0.0011 27.7 6.3 101 96-204 147-252 (317)
419 KOG3350 Uncharacterized conser 52.6 1.1E+02 0.0024 23.9 9.4 93 95-187 72-175 (217)
420 PRK13243 glyoxylate reductase; 52.4 31 0.00068 29.2 5.0 104 96-204 149-259 (333)
421 PF07101 DUF1363: Protein of u 51.7 5.9 0.00013 27.2 0.4 17 100-116 6-22 (124)
422 PRK07806 short chain dehydroge 51.7 1.1E+02 0.0023 23.9 7.9 87 97-185 6-135 (248)
423 COG5379 BtaA S-adenosylmethion 51.4 22 0.00048 29.9 3.7 37 95-132 62-98 (414)
424 PRK08306 dipicolinate synthase 51.0 37 0.0008 28.3 5.2 86 96-189 151-246 (296)
425 PF08468 MTS_N: Methyltransfer 50.5 31 0.00067 25.9 4.2 103 96-202 12-121 (155)
426 COG0111 SerA Phosphoglycerate 50.3 42 0.00091 28.5 5.4 103 97-204 142-252 (324)
427 COG1087 GalE UDP-glucose 4-epi 50.3 77 0.0017 26.8 6.7 65 99-165 2-89 (329)
428 cd08241 QOR1 Quinone oxidoredu 50.3 1.2E+02 0.0026 24.3 8.2 86 92-184 135-238 (323)
429 cd08242 MDR_like Medium chain 50.1 61 0.0013 26.5 6.4 83 91-182 150-243 (319)
430 KOG4022 Dihydropteridine reduc 50.0 1.2E+02 0.0025 23.4 8.3 56 98-155 4-79 (236)
431 PF01558 POR: Pyruvate ferredo 50.0 49 0.0011 24.8 5.3 45 134-185 42-87 (173)
432 PRK09260 3-hydroxybutyryl-CoA 49.2 14 0.00029 30.5 2.3 95 99-200 3-130 (288)
433 cd05279 Zn_ADH1 Liver alcohol 48.6 90 0.002 26.4 7.3 88 90-184 177-285 (365)
434 PRK14620 NAD(P)H-dependent gly 48.6 33 0.00072 28.7 4.6 85 99-188 2-110 (326)
435 TIGR00497 hsdM type I restrict 48.5 1.3E+02 0.0029 26.9 8.7 92 95-186 216-357 (501)
436 PRK08265 short chain dehydroge 48.4 1.1E+02 0.0023 24.4 7.4 57 97-155 6-87 (261)
437 PRK05808 3-hydroxybutyryl-CoA 48.3 30 0.00064 28.3 4.2 95 99-199 5-130 (282)
438 PRK08410 2-hydroxyacid dehydro 47.9 98 0.0021 25.9 7.3 101 96-204 144-251 (311)
439 COG0416 PlsX Fatty acid/phosph 47.6 27 0.00058 29.7 3.7 58 97-155 139-229 (338)
440 PLN02514 cinnamyl-alcohol dehy 47.5 83 0.0018 26.6 6.9 86 93-184 177-275 (357)
441 PLN02178 cinnamyl-alcohol dehy 47.1 64 0.0014 27.6 6.2 84 95-184 177-273 (375)
442 COG0031 CysK Cysteine synthase 46.8 1.8E+02 0.0038 24.5 8.9 37 95-131 167-208 (300)
443 TIGR00518 alaDH alanine dehydr 46.7 15 0.00032 31.7 2.2 88 96-186 166-269 (370)
444 PRK09599 6-phosphogluconate de 46.7 36 0.00078 28.2 4.5 100 99-203 2-112 (301)
445 PRK06436 glycerate dehydrogena 46.6 64 0.0014 27.0 5.9 103 96-204 121-228 (303)
446 PRK07877 hypothetical protein; 46.5 1.3E+02 0.0028 28.7 8.4 92 96-204 106-199 (722)
447 PRK09987 dTDP-4-dehydrorhamnos 46.5 75 0.0016 26.1 6.3 53 99-155 2-61 (299)
448 PF05050 Methyltransf_21: Meth 46.4 20 0.00044 26.1 2.7 30 102-131 1-35 (167)
449 PRK09489 rsmC 16S ribosomal RN 46.2 53 0.0012 28.0 5.5 52 147-201 75-127 (342)
450 cd08298 CAD2 Cinnamyl alcohol 46.0 88 0.0019 25.7 6.8 83 91-183 162-255 (329)
451 COG0569 TrkA K+ transport syst 45.8 35 0.00076 27.1 4.1 54 99-155 2-73 (225)
452 COG4017 Uncharacterized protei 45.6 89 0.0019 24.7 6.0 60 95-155 43-106 (254)
453 cd08265 Zn_ADH3 Alcohol dehydr 45.2 79 0.0017 27.0 6.5 86 92-183 199-306 (384)
454 PRK07819 3-hydroxybutyryl-CoA 45.0 61 0.0013 26.7 5.5 81 98-180 6-117 (286)
455 PF08484 Methyltransf_14: C-me 44.6 1.3E+02 0.0029 22.5 7.7 85 95-184 66-159 (160)
456 cd08296 CAD_like Cinnamyl alco 44.3 69 0.0015 26.6 5.9 84 93-184 160-259 (333)
457 TIGR00027 mthyl_TIGR00027 meth 44.2 1.7E+02 0.0038 23.7 8.5 90 97-186 82-199 (260)
458 COG0863 DNA modification methy 44.1 50 0.0011 26.9 5.0 40 93-133 219-258 (302)
459 PRK06274 indolepyruvate oxidor 44.0 1.5E+02 0.0032 22.8 7.3 32 146-184 65-96 (197)
460 PF03446 NAD_binding_2: NAD bi 43.9 6.6 0.00014 29.4 -0.3 97 99-203 3-112 (163)
461 KOG0023 Alcohol dehydrogenase, 43.6 33 0.00072 29.2 3.7 90 93-186 178-281 (360)
462 PF08351 DUF1726: Domain of un 43.4 35 0.00076 23.2 3.2 39 146-186 9-47 (92)
463 PRK08229 2-dehydropantoate 2-r 43.4 1.5E+02 0.0032 24.8 7.8 101 98-203 3-124 (341)
464 TIGR01381 E1_like_apg7 E1-like 43.2 29 0.00062 32.4 3.5 34 96-129 337-372 (664)
465 PRK06035 3-hydroxyacyl-CoA deh 43.2 40 0.00088 27.7 4.2 98 98-200 4-134 (291)
466 PF06016 Reovirus_L2: Reovirus 42.7 82 0.0018 31.7 6.6 89 96-186 822-929 (1289)
467 PF00072 Response_reg: Respons 42.7 72 0.0016 21.2 4.9 41 147-188 42-82 (112)
468 KOG0022 Alcohol dehydrogenase, 42.7 34 0.00073 29.2 3.6 86 92-183 188-293 (375)
469 PLN00016 RNA-binding protein; 42.4 66 0.0014 27.5 5.5 59 95-155 50-137 (378)
470 PLN02702 L-idonate 5-dehydroge 42.0 1.2E+02 0.0027 25.4 7.2 88 92-184 177-285 (364)
471 COG2910 Putative NADH-flavin r 41.6 1.3E+02 0.0027 23.8 6.3 76 99-176 2-94 (211)
472 COG1743 Adenine-specific DNA m 41.3 51 0.0011 31.4 4.8 42 163-204 567-609 (875)
473 PRK06130 3-hydroxybutyryl-CoA 41.2 22 0.00048 29.5 2.4 100 97-200 4-128 (311)
474 PF02153 PDH: Prephenate dehyd 41.1 24 0.00053 28.6 2.6 86 111-200 2-94 (258)
475 TIGR00745 apbA_panE 2-dehydrop 41.0 1.1E+02 0.0025 24.6 6.6 51 147-201 58-108 (293)
476 PRK06932 glycerate dehydrogena 40.9 1.1E+02 0.0023 25.8 6.5 102 96-204 146-252 (314)
477 PLN02928 oxidoreductase family 40.9 63 0.0014 27.6 5.1 104 96-204 158-281 (347)
478 PLN02256 arogenate dehydrogena 40.4 57 0.0012 27.3 4.7 98 95-199 34-141 (304)
479 cd08267 MDR1 Medium chain dehy 39.9 2E+02 0.0043 23.1 8.4 87 92-184 139-240 (319)
480 PRK11730 fadB multifunctional 39.9 93 0.002 29.4 6.5 96 98-198 314-439 (715)
481 PF12242 Eno-Rase_NADH_b: NAD( 39.8 51 0.0011 21.8 3.3 43 86-128 28-73 (78)
482 PRK07066 3-hydroxybutyryl-CoA 39.7 74 0.0016 26.9 5.3 98 97-199 7-131 (321)
483 cd08266 Zn_ADH_like1 Alcohol d 39.1 1.7E+02 0.0037 23.7 7.5 86 92-184 162-265 (342)
484 cd08238 sorbose_phosphate_red 38.7 1E+02 0.0023 26.6 6.3 88 92-184 171-288 (410)
485 PRK08818 prephenate dehydrogen 38.7 93 0.002 26.9 5.8 73 97-180 4-84 (370)
486 PRK10083 putative oxidoreducta 38.7 1.2E+02 0.0026 25.0 6.5 89 91-184 155-259 (339)
487 PRK08324 short chain dehydroge 38.3 1.3E+02 0.0028 28.2 7.1 89 96-186 421-559 (681)
488 PRK12744 short chain dehydroge 37.9 2E+02 0.0043 22.6 8.0 86 97-184 8-145 (257)
489 TIGR02356 adenyl_thiF thiazole 37.9 42 0.00091 26.1 3.4 34 96-129 20-55 (202)
490 PRK09496 trkA potassium transp 37.7 2.4E+02 0.0052 24.5 8.5 83 99-186 2-101 (453)
491 KOG1252 Cystathionine beta-syn 37.6 92 0.002 26.7 5.4 38 95-132 210-252 (362)
492 PF06897 DUF1269: Protein of u 37.5 83 0.0018 21.8 4.4 39 163-203 41-79 (102)
493 PRK08534 pyruvate ferredoxin o 37.2 1.6E+02 0.0034 22.4 6.4 34 145-184 63-97 (181)
494 COG1748 LYS9 Saccharopine dehy 37.2 1.4E+02 0.003 26.1 6.6 56 98-155 2-75 (389)
495 PRK15182 Vi polysaccharide bio 36.6 40 0.00087 29.7 3.3 86 96-184 5-120 (425)
496 PF14740 DUF4471: Domain of un 36.6 41 0.00088 28.1 3.2 55 146-205 220-283 (289)
497 PRK05225 ketol-acid reductoiso 36.0 1.1E+02 0.0024 27.4 5.9 85 95-184 34-131 (487)
498 PRK08223 hypothetical protein; 35.8 44 0.00096 27.8 3.3 35 96-130 26-62 (287)
499 PRK09548 PTS system ascorbate- 35.7 44 0.00095 30.9 3.5 55 95-155 504-561 (602)
500 COG2813 RsmC 16S RNA G1207 met 35.6 88 0.0019 26.3 5.0 52 148-202 37-89 (300)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.84 E-value=9.4e-21 Score=151.33 Aligned_cols=94 Identities=28% Similarity=0.386 Sum_probs=84.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...++.+|||+|||||..+..+++ .|.++|+|+|+|+.|++ ++++|++++||+|++||++.+++
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 445899999999999999999999 57789999999999663 78999999999999999999998
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..+.+ |+.++|+|+.|+|||||++++..-.
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 88888 9999999999999999987776544
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.78 E-value=3.2e-19 Score=143.26 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=70.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..++.+|||+|||||..+..+++. +.++|+|+|+|+.|++ ++++|++++|+++++||+|++..
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 478899999999999999999883 3579999999999663 88999999999999999999988
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
..+.+ |+.+.++|++|+|||||+++++....
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 77777 99999999999999999998876554
No 3
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.76 E-value=9.7e-19 Score=120.42 Aligned_cols=82 Identities=30% Similarity=0.522 Sum_probs=71.6
Q ss_pred EEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------cEEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHH
Q 028410 101 LCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (209)
Q Consensus 101 LDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l 167 (209)
||+|||+|..+..+++.+..+++++|++++++ .+.++|++++|+++++||+|++.++.++. ++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 89999999999999998556999999999844 28999999999999999999999999988 899999
Q ss_pred HHHHHhcccCcEEEE
Q 028410 168 GEMERTVKIGGVCMV 182 (209)
Q Consensus 168 ~~~~r~LkpgG~lil 182 (209)
+++.|+|||||++++
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999875
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=1.1e-17 Score=136.68 Aligned_cols=94 Identities=21% Similarity=0.194 Sum_probs=81.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC------------------cEEEcCCCCCCCCCCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP------------------LVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~------------------~~~~~d~~~~~~~~~~fD~i 152 (209)
.+.++.+|||+|||+|..+..+++. + .++|+|+|+|++|+ .++++|++++|+++++||+|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 4477899999999999999998874 3 46999999998754 36789999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++...++. ++..+++|+.|+|||||++++....
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 998888877 9999999999999999999887543
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=3.9e-17 Score=133.09 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=91.1
Q ss_pred cCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------cEEEcCC
Q 028410 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------LVSRADP 139 (209)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------~~~~~d~ 139 (209)
|....|.+...........+.......++.+|||+|||+|..+..+++. +..+|+|+|+|+.++ +++++|+
T Consensus 2 w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~ 81 (255)
T PRK14103 2 WDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV 81 (255)
T ss_pred CCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh
Confidence 4444554444433333344444445578899999999999999999885 446999999999865 4788999
Q ss_pred CCCCCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 140 HNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 140 ~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+++ ++++||+|+++.+.+++ ++.++++++.++|||||.+++.+.
T Consensus 82 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 82 RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 8875 57899999999998888 899999999999999999988753
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.72 E-value=9.3e-17 Score=134.49 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||||||+|..+..+++.+. +|+|+|++++++ .++++|++++++++++||+|++.++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4677999999999999999998764 999999998643 36777888888888999999999999
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++..+++++.++|||||.+++.+.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999 999999999999999999998863
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=1.7e-16 Score=128.95 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~ 163 (209)
.++.+|||+|||+|..+..+++.+ .+++++|+|+.++ .++++|++++++++++||+|+++...++. ++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 467899999999999999998876 4999999999855 47899999999999999999998877777 99
Q ss_pred HHHHHHHHHhcccCcEEEEEEec
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..++.++.++|||||.+++....
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999998887644
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=1.5e-16 Score=134.75 Aligned_cols=91 Identities=24% Similarity=0.319 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|..+..+++....+|+|+|+|+.+ +.++++|+.++|+++++||+|++....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 6788999999999999999998422499999999863 347889999999999999999998888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++.++++++.|+|||||.++++..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888 899999999999999999998753
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.68 E-value=3.1e-17 Score=129.53 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
-++.+|||+|||.|.++..+|+.|. +|+|+|+++++++ +.+..++++....++||+|+|..+.+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4899999999999999999999994 9999999999776 334444444444589999999999999
Q ss_pred h-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 161 L-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 161 ~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
. +|..+++++.+.+||||.+++.+-.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9 9999999999999999998777654
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.67 E-value=4.7e-16 Score=124.72 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=80.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++. +.++|+|+|+++.++ +++.+|+.++++++++||+|++.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4578899999999999999999873 346999999997743 47889998888888999999998
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...++. ++.++++++.++|||||++++....
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 777777 8899999999999999998876543
No 11
>PRK05785 hypothetical protein; Provisional
Probab=99.67 E-value=7.3e-16 Score=123.49 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRF 166 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~ 166 (209)
.++.+|||+|||+|..+..+++....+|+|+|+|++|++ ++++|++++|+++++||+|++....++. ++.++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~ 129 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKV 129 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHH
Confidence 457899999999999999998862249999999999775 6789999999999999999999888777 99999
Q ss_pred HHHHHHhcccCcEEEEEEecCC
Q 028410 167 VGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 167 l~~~~r~LkpgG~lil~~~~~~ 188 (209)
++|+.|+|||. ..++.+..++
T Consensus 130 l~e~~RvLkp~-~~ile~~~p~ 150 (226)
T PRK05785 130 IAEFTRVSRKQ-VGFIAMGKPD 150 (226)
T ss_pred HHHHHHHhcCc-eEEEEeCCCC
Confidence 99999999994 3344444443
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=1.2e-16 Score=120.59 Aligned_cols=93 Identities=28% Similarity=0.434 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHH
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l 167 (209)
..++.+|||+|||+|.++..+++.|. +++|+|+++.+++ ....+....+.++++||+|+|+++.+|+ ++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 48899999999999999999988887 9999999987652 2233333455678999999999999999 999999
Q ss_pred HHHHHhcccCcEEEEEEecC
Q 028410 168 GEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 168 ~~~~r~LkpgG~lil~~~~~ 187 (209)
+++.++|||||++++.+...
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHhcCCCCEEEEEEcCC
Confidence 99999999999999998764
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=8.5e-16 Score=129.10 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|.++..++..+...|+|+|+|+.+ +.++.+|++++|+ +++||+|+|..+.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 4578999999999999999999766689999998842 3477888888988 8899999999888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecC---C------------------cccHHHHHHHhcccccc
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEEC---A------------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~---~------------------~~~~~~~~~l~~~~~~~ 205 (209)
+|. ++..+++++++.|||||.+++..-.. . ..+...+.+++.++||.
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~ 268 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFK 268 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCc
Confidence 888 99999999999999999998763210 0 01445677888888884
No 14
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=6.8e-16 Score=125.86 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=88.0
Q ss_pred cCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------cEEEc
Q 028410 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------LVSRA 137 (209)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------~~~~~ 137 (209)
|....+.+...........+.......++.+|||+|||+|.++..+++. +..+|+|+|+|+.++ .+..+
T Consensus 4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 4444443333322223333444445578899999999999999999884 556999999998744 47788
Q ss_pred CCCCCCCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 138 DPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 138 d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|+.++. ++++||+|+++...+++ ++..+++++.++|||||.+++.+.
T Consensus 84 d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred chhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 887765 45699999999888888 899999999999999999888753
No 15
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.65 E-value=1.5e-15 Score=126.67 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++.+|||+|||+|.++..++..+...|+|+|+|+.++ .+..+++++++. .++||+|+|..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcch
Confidence 356789999999999999999887666899999998643 245667777775 358999999998
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEecCC---------------------cccHHHHHHHhccccccc
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~---------------------~~~~~~~~~l~~~~~~~~ 206 (209)
.+|. ++..++++++++|||||.+++.+...+ ..+...+...++++||..
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 8888 999999999999999999998642210 013456777888888854
No 16
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.65 E-value=1.4e-15 Score=120.71 Aligned_cols=95 Identities=23% Similarity=0.199 Sum_probs=80.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CC------ceEEEecCCCCCCc------------------EEEcCCCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GV------ADVTGVELMDSLPL------------------VSRADPHNLPFFDE 147 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~------~~v~~vD~s~~~~~------------------~~~~d~~~~~~~~~ 147 (209)
...+++++||++||||..+..+.+. +. ++|+..|+|+.|+. |+.+|++++||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3467899999999999999999873 32 69999999999663 88999999999999
Q ss_pred ceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 148 AFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 148 ~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+||...+..-.... ++++.++|++|+|||||++.......
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 99999887544434 89999999999999999988665543
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=2.4e-15 Score=123.08 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=78.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.++++.+|||+|||+|..+..+++....+|+|+|+|+.+ +.+..+|+.+.++++++||+|++.....
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 568899999999999999999987422499999999864 3477899988899999999999976655
Q ss_pred hh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|. ++..+++++.++|||||.+++...
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 54 678999999999999999988754
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=1.1e-15 Score=124.52 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCC-CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLP-FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~-~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++.+. +|+++|+|++++ .++++|+.+++ +++++||+|+++.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 5678999999999999999999875 999999998754 36677877763 56789999999999
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+++ ++..++.++.++|||||.+++.+..
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 9988 8999999999999999999887654
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=7.3e-16 Score=116.02 Aligned_cols=91 Identities=20% Similarity=0.396 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~~ 155 (209)
+++.+|||+|||+|..+..+++ . +..+++|+|+|+.++ .+.++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 5688999999999999999994 3 456999999999855 38899999977 65 899999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.++. ++..+++++.+.||+||.+++....
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888877 7889999999999999998888766
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=4.2e-15 Score=131.19 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++++.+|||+|||+|..+..+++....+|+|+|+|+.++ .+.++|+.+.++++++||+|+|..+.
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 3577889999999999999999884234999999997643 47889999988888999999999888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++..++++++++|||||.+++...
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 888 999999999999999999988754
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=4.8e-15 Score=116.39 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=73.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+..+++.+. +|+|+|+|+.++ .+...|+.+.++ +++||+|++..+.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~ 105 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVL 105 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecch
Confidence 35678999999999999999999875 999999998754 356678777776 4679999998877
Q ss_pred hhhC---HHHHHHHHHHhcccCcEEEEE
Q 028410 159 EALF---PSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 159 ~~~~---~~~~l~~~~r~LkpgG~lil~ 183 (209)
++++ ...+++++.++|||||++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 6663 478999999999999996554
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.61 E-value=3.3e-15 Score=125.69 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC------------cEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
+++.+|||+|||+|..+..+++ .+..+++++|+|+.++ .++.+|++++++++++||+|+++++.++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 5678999999999999998887 4446999999998753 47889999999999999999999888877
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEecC-C-------------cccHHHHHHHhccccccc
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLMEEC-A-------------GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~~~-~-------------~~~~~~~~~l~~~~~~~~ 206 (209)
++...++++.++|||||.+++..... . .....++.+++++.||..
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 89999999999999999987764321 1 225677888888888843
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=8e-15 Score=114.04 Aligned_cols=91 Identities=23% Similarity=0.189 Sum_probs=76.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.++++.+|||+|||+|..+..++. .+..+|+++|+++.++ .++++|+.+++. +++||+|+++.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 346689999999999999999987 4556999999998744 478888888776 78999999965
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
. .++..+++++.+.|||||.+++.....
T Consensus 121 ~---~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 121 V---ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred c---cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 3 257899999999999999998886653
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.59 E-value=7.5e-15 Score=120.66 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=89.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++ .+ .++|+++|+++.++ .+..+|++++++++++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 457899999999999998887776 33 35899999998744 36789999999988999999998
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEecC--------------------CcccHHHHHHHhcccccc
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC--------------------AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~--------------------~~~~~~~~~~l~~~~~~~ 205 (209)
.+.++. +...+++++.++|||||++++..... +.....++.+++...+|.
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~ 224 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFV 224 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCC
Confidence 877777 88999999999999999998853211 123455677777777764
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=9.9e-15 Score=114.42 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++ +...|+...++ +++||+|+++.+.++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEeccccc
Confidence 4568999999999999999999875 9999999987554 44556655555 358999999877776
Q ss_pred hC---HHHHHHHHHHhcccCcEEEEEEecC-----------CcccHHHHHHHhccccc
Q 028410 161 LF---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~~---~~~~l~~~~r~LkpgG~lil~~~~~-----------~~~~~~~~~~l~~~~~~ 204 (209)
++ ...+++++.++|||||++++...-. ......++.+.|....+
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~ 164 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWEL 164 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeE
Confidence 63 4789999999999999966553211 12456677777765444
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=2.8e-15 Score=106.66 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCC-CCCCCCCCceeeEEccc-
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADP-HNLPFFDEAFDVAFTAH- 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~-~~~~~~~~~fD~i~~~~- 156 (209)
|+.+|||+|||+|..+..+++ .+..+|+|+|+|+.+++ ++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 578999999999999999999 45569999999998553 788888 33333 45699999987
Q ss_pred chhhh----CHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEAL----FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~----~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..++. +..++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33322 45789999999999999987754
No 27
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.58 E-value=1.2e-14 Score=118.77 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------c--EEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------L--VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~--~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
-.+.+|||||||.|+++..++..|...|+|+|+++... . .+-..++++|. .++||+|+|..|.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 46889999999999999999998888999999988621 1 11235666776 7899999999999
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecCCc---------------------ccHHHHHHHhccccccc
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEECAG---------------------REIKQIVELFRTSSFTE 206 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~---------------------~~~~~~~~l~~~~~~~~ 206 (209)
.|. +|...+.+++..|+|||.+++-+-..+. .+...+...++++||.+
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence 999 9999999999999999999876543211 26777888888998854
No 28
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.6e-15 Score=120.89 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=72.6
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcE---------------------EEcCCCCCCCCCCceeeEEcc
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV---------------------SRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~---------------------~~~d~~~~~~~~~~fD~i~~~ 155 (209)
+++|||+|||+|.++..|++.|. +|+|+|++++++++ ...+.+.. .+.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 48899999999999999999985 99999999997752 22222222 2569999999
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.+|. ||++++..+.+.|||||.+++.+-.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999 9999999999999999999888654
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=3.5e-14 Score=113.63 Aligned_cols=93 Identities=26% Similarity=0.423 Sum_probs=81.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC--------------CcEEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.+|||+|||+|..+..+++. +..+++++|+++.+ +.+...|+.+.++++++||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 5578899999999999999999884 45699999999763 3477888888888889999999999
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.++. ++..+++++.++|||||.+++...
T Consensus 96 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 96 VLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 88888 999999999999999999887753
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.57 E-value=2.4e-14 Score=114.71 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-----------CcEEEcCCCCCCCCCCceeeEEcccchhhh-
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~- 161 (209)
..+.+|||+|||+|..+..+++. +..+++++|+++.+ +.++.+|+.+.++++++||+|+++++.++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 34579999999999999999884 44579999999874 357889999999889999999999998888
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++..++.++.++|||||.+++....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999999999999999998887643
No 31
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.57 E-value=2.1e-14 Score=113.78 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=74.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC----CCcEEEcCCCCCC--------CCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~i~~~~~~ 158 (209)
.++++.+|||+|||+|.++..+++. + .+.|+|+|+++. .+.++++|+.+.+ +.+++||+|+++...
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 4588899999999999999999884 2 369999999872 3568999999863 677899999996432
Q ss_pred hhh-C-----------HHHHHHHHHHhcccCcEEEEEEec
Q 028410 159 EAL-F-----------PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~-~-----------~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+.. + ...+++++.++|||||.+++.+..
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 221 1 146899999999999999886554
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.56 E-value=6.2e-15 Score=102.92 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=53.2
Q ss_pred EEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCC--CCCCceeeEEcccchhhh-
Q 028410 101 LCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLP--FFDEAFDVAFTAHLAEAL- 161 (209)
Q Consensus 101 LDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~--~~~~~fD~i~~~~~~~~~- 161 (209)
||+|||+|..+..+.+. +..+++++|+|+.+++ ....+..+.. ...++||+|++..+.+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999884 6679999999999984 1222222221 122599999999999999
Q ss_pred CHHHHHHHHHHhcccCcEE
Q 028410 162 FPSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~l 180 (209)
++..+++++.+.|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999985
No 33
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=3.8e-14 Score=109.80 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|..+..++.. +.++|+++|+|+.++ .++++|+.+++ .+++||+|+++.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRAL-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhh--
Confidence 3789999999999999998874 456899999998633 47888888874 3679999999652
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.+...+++.+.+.|||||.+++..+.....+...+.+-...+|+
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~ 162 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV 162 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence 25778889999999999998887654443333334333333555
No 34
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.54 E-value=2.1e-14 Score=111.46 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
-++.++||+|||.|+.+.+||+.|+ +|+++|.|+..+ ...+.|+.+..++ +.||+|++..+.++
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 4678999999999999999999998 999999999744 3678888887774 68999998777777
Q ss_pred hCH---HHHHHHHHHhcccCcEEEEEEecC-C----------cccHHHHHHHhccccccc
Q 028410 161 LFP---SRFVGEMERTVKIGGVCMVLMEEC-A----------GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 161 ~~~---~~~l~~~~r~LkpgG~lil~~~~~-~----------~~~~~~~~~l~~~~~~~~ 206 (209)
+++ ..+++.|...++|||++++.+.-. + .....++.+.|..+++++
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~ 166 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILK 166 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEE
Confidence 733 678999999999999988854321 1 124466777887777654
No 35
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.54 E-value=3.4e-14 Score=110.35 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=93.5
Q ss_pred CCCCchhhhhccCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEc
Q 028410 58 HLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA 137 (209)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~ 137 (209)
|..+++.+-+-|..+.- ..++..+. ...++..|.|+|||.+..+..+.+ ++ +|...|+......+...
T Consensus 44 YH~Gfr~Qv~~WP~nPv-------d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~n~~Vtac 111 (219)
T PF05148_consen 44 YHEGFRQQVKKWPVNPV-------DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAPNPRVTAC 111 (219)
T ss_dssp HHHHHHHHHCTSSS-HH-------HHHHHHHC---TS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES
T ss_pred HHHHHHHHHhcCCCCcH-------HHHHHHHH---hcCCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCCCCCEEEe
Confidence 66677776677776543 22333331 225568999999999999976543 23 89999999888889999
Q ss_pred CCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 138 DPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 138 d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
|+.+.|+++++.|+++++-.....+..+++.|..|+|||||.+.|..-.+.....+.+.+.+...||.
T Consensus 112 dia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 112 DIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFK 179 (219)
T ss_dssp -TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEE
T ss_pred cCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCe
Confidence 99999999999999988654554588999999999999999999998888888999999999999984
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=4.3e-14 Score=117.17 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++ +...|+...++ +++||+|++..+.+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 445999999999999999999875 9999999988543 55667766655 6789999998887776
Q ss_pred C---HHHHHHHHHHhcccCcEEEEEEecC-----------CcccHHHHHHHhccccccc
Q 028410 162 F---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 162 ~---~~~~l~~~~r~LkpgG~lil~~~~~-----------~~~~~~~~~~l~~~~~~~~ 206 (209)
+ ...+++++.++|||||+++++.... ......++.+.|...++++
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~ 256 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVK 256 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEE
Confidence 3 4789999999999999976654211 1246677888888776654
No 37
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=4.3e-14 Score=109.03 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCC-CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLP-FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~-~~~~~fD~i~~~~~ 157 (209)
.....+|++|||||..-...--.+..+||++|++++|-+ |++++.+++| ++++++|.|++.-+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 344567999999999877766545569999999998543 7899999998 89999999999877
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
.... ++.+.++|+.|+|||||++++..-..+
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 7777 999999999999999999888765543
No 38
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.52 E-value=3e-14 Score=113.10 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------------EEEcCCCCCCCC-C
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------VSRADPHNLPFF-D 146 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------~~~~d~~~~~~~-~ 146 (209)
.++.+|||+|||.|..+.+||+.|+ +|+|+|+|+.+++ +.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5778999999999999999999998 9999999987333 468888776642 4
Q ss_pred CceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecC---------CcccHHHHHHHhcc-cccc
Q 028410 147 EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC---------AGREIKQIVELFRT-SSFT 205 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~---------~~~~~~~~~~l~~~-~~~~ 205 (209)
++||.|+...+.+++.+ ...++.+.++|||||++++.+... -.....++.++|.. +++.
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~ 183 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIE 183 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEE
Confidence 67999998776666733 668999999999999866654321 12466778888863 3553
No 39
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.51 E-value=6.3e-14 Score=115.28 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-C---CceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-G---VADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~---~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.+..+|||+|||+|.++..+++. + ..+++|+|+|+.++ .+.++|+.++|+++++||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 45688999999999999998873 2 23799999998755 3788999999999999999998532
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+.++.|+|||||.++++....
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCCC
Confidence 234689999999999998876553
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.51 E-value=1.8e-13 Score=107.93 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEcccchhhhC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 162 (209)
+.++.+|||+|||+|..+..+++. +..+++|+|+|+.++ .+.++|+.+ ++++++||+|+++.+.+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 467889999999999999999884 556999999999855 377888888 88899999999999888885
Q ss_pred H---HHHHHHHHHhcccCcEEEEEE
Q 028410 163 P---SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ~---~~~l~~~~r~LkpgG~lil~~ 184 (209)
+ .++++++.|++ ++.+++..
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 4 66778888876 45555544
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=1e-13 Score=110.69 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=83.7
Q ss_pred CeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.+|||+|||+|..+..+++. +..+++|+|+|+.++ .+...|+.+.+++ ++||+|++..+.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999884 446999999997643 4677888766664 58999999988888
Q ss_pred h-CHHHHHHHHHHhcccCcEEEEEEecCC-------------cccHHHHHHHhccccc
Q 028410 161 L-FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~-~~~~~l~~~~r~LkpgG~lil~~~~~~-------------~~~~~~~~~l~~~~~~ 204 (209)
. ++..+++++.++|||||.+++.....+ .....++.+++.+.+|
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf 137 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNL 137 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCC
Confidence 8 899999999999999999988753211 1234556677777776
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.49 E-value=3.8e-14 Score=111.72 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCC-CCCC--CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADP-HNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~-~~~~--~~~~~fD~i~~~ 155 (209)
+++.+|||+|||+|..+..+++. +..+++|+|+|+.++ .++++|+ ..++ +++++||.|+++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 46789999999999999999884 556899999998744 3788888 6666 778899999986
Q ss_pred cchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
....+. ....+++++.++|||||.+++.+.. ......+.+.+...++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--EGYAEYMLEVLSAEGG 174 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHhCcc
Confidence 432111 1478899999999999998876643 4556677777777665
No 43
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=6.4e-14 Score=113.71 Aligned_cols=89 Identities=8% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh---cCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS---IGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~---~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
+.++.+|||+|||+|..+..+++ .+..+++|+|+|+.|+ .++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 46789999999999999988876 2456999999999755 3678888887764 4899999
Q ss_pred ccchhhhC---HHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALF---PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+.+.++++ ...+++++.++|||||.+++..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 87777773 3679999999999999998875
No 44
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.49 E-value=1.5e-13 Score=112.57 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=77.9
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChh----HHHHHhc-C-----CceEEEecCCCCCC---------------------
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHE----VMAFNSI-G-----VADVTGVELMDSLP--------------------- 132 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~----~~~la~~-~-----~~~v~~vD~s~~~~--------------------- 132 (209)
+++.+.......++.+|+|+|||+|.. +..+++. + ..+|+|+|+|+.++
T Consensus 87 vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~ 166 (264)
T smart00138 87 VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL 166 (264)
T ss_pred HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH
Confidence 334443333345678999999999974 4444442 1 24899999999744
Q ss_pred ---------------------cEEEcCCCCCCCCCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecC
Q 028410 133 ---------------------LVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 133 ---------------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.|.+.|+.+.++++++||+|+|.++.+++++ .++++++++.|||||++++...+.
T Consensus 167 ~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 167 ARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred hhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 3567788887777899999999999888843 579999999999999988876654
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.49 E-value=6.7e-13 Score=105.33 Aligned_cols=92 Identities=29% Similarity=0.378 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CC-ceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~-~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+..+++. +. .+++++|+++.+ +.+..+|+.+.++++++||+|+++...
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 357899999999999999999884 32 589999998653 457788998888888899999998877
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++. ++..+++++.+.|+|||.+++...
T Consensus 117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 777 899999999999999999987654
No 46
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.48 E-value=2.5e-13 Score=108.12 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=84.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------------EEEcCCCCCCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------VSRADPHNLPFFD 146 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------~~~~d~~~~~~~~ 146 (209)
..++.+|||+|||.|..+.+|++.|+ +|+|+|+|+.+++ +.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35678999999999999999999998 9999999987333 4678888775332
Q ss_pred -CceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEe--cCC-------cccHHHHHHHhcc-cccc
Q 028410 147 -EAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLME--ECA-------GREIKQIVELFRT-SSFT 205 (209)
Q Consensus 147 -~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~--~~~-------~~~~~~~~~l~~~-~~~~ 205 (209)
.+||.|+...+.+++. ..+.++.+.++|||||.+++++. ..+ .....++.++|.. .++.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~ 186 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIE 186 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEE
Confidence 5899999877777773 37889999999999997554322 111 2466778888876 4553
No 47
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.48 E-value=5.6e-13 Score=106.87 Aligned_cols=92 Identities=25% Similarity=0.350 Sum_probs=78.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+ +.+..+|+.+.++++++||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 4567899999999999999998853 4799999998753 347788888888878899999998
Q ss_pred cchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++.++. ++..++.++.+.|+|||.++++..
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 877777 899999999999999999887643
No 48
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.47 E-value=2.2e-14 Score=100.63 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=64.3
Q ss_pred EEEEcCCCChhHHHHHhc---C-CceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEccc-chhh
Q 028410 100 VLCVSAGAGHEVMAFNSI---G-VADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAH-LAEA 160 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~~---~-~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~-~~~~ 160 (209)
|||+|||+|..+..+.+. + ..+++|+|+|+.++ .++++|+.++++.+++||+|++.. +.+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999984 2 26999999999855 389999999998899999999954 4666
Q ss_pred hC---HHHHHHHHHHhcccCc
Q 028410 161 LF---PSRFVGEMERTVKIGG 178 (209)
Q Consensus 161 ~~---~~~~l~~~~r~LkpgG 178 (209)
+. ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 74 4889999999999998
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=3.4e-13 Score=119.11 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCC--CCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPH--NLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~--~~~~~~~~fD~i~~~~~~~ 159 (209)
.++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++ ++++|+. ++++++++||+|++..+.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 457799999999999999999874 49999999988553 6778886 4678889999999998888
Q ss_pred hh-C--HHHHHHHHHHhcccCcEEEEEEecC-------------CcccHHHHHHHhccccccc
Q 028410 160 AL-F--PSRFVGEMERTVKIGGVCMVLMEEC-------------AGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 160 ~~-~--~~~~l~~~~r~LkpgG~lil~~~~~-------------~~~~~~~~~~l~~~~~~~~ 206 (209)
++ + ..++++++.++|||||.+++..... .....+....+|.++++.+
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 177 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRD 177 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheecc
Confidence 87 3 4789999999999999987753221 1124667778898888754
No 50
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.47 E-value=1.8e-13 Score=110.45 Aligned_cols=88 Identities=9% Similarity=0.075 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc---CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~---~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|+ .++++|+.+++++ .+|+|+++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 67889999999999999998873 346999999998754 3678888888764 48999998
Q ss_pred cchhhh---CHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~---~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.+++ ++..+++++.++|||||.+++..
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 877776 34789999999999999988874
No 51
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.46 E-value=2.8e-13 Score=105.55 Aligned_cols=108 Identities=21% Similarity=0.322 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------EEEcCCCC-CCCCCCceeeEEccc-------c
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHN-LPFFDEAFDVAFTAH-------L 157 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------~~~~d~~~-~~~~~~~fD~i~~~~-------~ 157 (209)
.+.-|||||||+|..+..+.+.|+ .++|+|+|+.|++ ++.+|+-. +||+.++||-+++.. .
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 478999999999999999999887 9999999999885 55566544 899999999999842 1
Q ss_pred hhhh-CH----HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 158 AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.... +| ..++..++.+|++|++.++-++..+..+...+..-..+.||
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 1111 33 55788899999999999999999888888888887777775
No 52
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.45 E-value=2.9e-13 Score=105.16 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=87.5
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------EEEcCCCCCCCCCCceeeEE
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------VSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------~~~~d~~~~~~~~~~fD~i~ 153 (209)
..++.+.-.+.+..+|.|+|||+|..+..|++ .+...++|+|-|++|++ |.++|+.++. ++..+|+++
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLF 97 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhh
Confidence 34445555778899999999999999999998 58789999999999885 8889998876 578999999
Q ss_pred cccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++.+++++ +-.+++..+...|.|||++.+.+..
T Consensus 98 aNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 98 ANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 99999999 8899999999999999997666654
No 53
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=5e-13 Score=109.80 Aligned_cols=98 Identities=24% Similarity=0.255 Sum_probs=72.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCC
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDE 147 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~ 147 (209)
+..+.+...++++.+|||||||.|..+..+++. |. +|+|+.+|++. +++...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence 444555567899999999999999999999995 76 99999999872 3367777776643
Q ss_pred ceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 148 AFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 148 ~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+||.|++..+.+|+ +...+++++.+.|||||++++....
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 99999999888888 4589999999999999999877544
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.44 E-value=4.5e-13 Score=103.12 Aligned_cols=90 Identities=26% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC--------CCcEEEcCCCC-C-CCCCCceeeEEcccchhhh-C
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHN-L-PFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~--------~~~~~~~d~~~-~-~~~~~~fD~i~~~~~~~~~-~ 162 (209)
..++.+|||+|||.|.+..+|.+....+..|+|++++ -+.++++|+++ + .|++++||.|+++....++ +
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 4899999999999999999999842348999999988 44599999987 3 4899999999999988888 9
Q ss_pred HHHHHHHHHHhcccCcEEEEEEec
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
|..+++||.|+ |...++.+..
T Consensus 91 P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 91 PDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHHHHHHHHh---cCeEEEEecC
Confidence 99999999766 5566676664
No 55
>PRK06922 hypothetical protein; Provisional
Probab=99.44 E-value=2.7e-13 Score=121.30 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC--------------cEEEcCCCCCC--CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP--------------LVSRADPHNLP--FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~--~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++ .+..+++|+|+|+.|+ .++++|..+++ +++++||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 5689999999999999998887 4567999999999754 25778888877 78899999998866
Q ss_pred hhhh--------------CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 158 AEAL--------------FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 158 ~~~~--------------~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+++ ++..+++++.++|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5542 357899999999999999988754
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.43 E-value=9e-13 Score=101.14 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|..+..+++. +..+|+++|+++.++ .+...|..+.. ++++||+|+++--.+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccceeEEEEccchh
Confidence 7889999999999999999995 444799999999844 36677776533 378999999973221
Q ss_pred hh------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 160 AL------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 160 ~~------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.. ...+++.+..+.|||||.++++...... ....+.++|...+.+.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~-~~~~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG-YERLLKELFGDVEVVA 161 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC-HHHHHHHHHS--EEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCC-hHHHHHHhcCCEEEEE
Confidence 11 2488899999999999999888776533 3444788998777644
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=2.1e-12 Score=105.41 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=78.9
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCcee
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFD 150 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD 150 (209)
..+...+++|+++||||||-|..+.++|+ ++. +|+|+++|+++.+ ++..|..++ ++.||
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~fD 139 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPFD 139 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---ccccc
Confidence 33444889999999999999999999999 465 9999999998443 445555444 45699
Q ss_pred eEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 151 VAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 151 ~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
-|++..+++|+ +...+++.+.+.|+|||.+++..-..
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 99999999988 36999999999999999998886553
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.42 E-value=1.2e-12 Score=94.31 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=70.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCC-CCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHN-LPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~-~~~~~~~fD~i~~~ 155 (209)
.+.++.+|||+|||+|..+..+++. +..+++++|+++.+++ ++.+|+.+ .+...++||+|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 4466789999999999999999984 5579999999987443 55566554 33334689999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.... ...++++++.+.|||||.+++.+.
T Consensus 96 ~~~~--~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 96 GSGG--LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred Ccch--hHHHHHHHHHHHcCCCCEEEEEec
Confidence 5322 346899999999999999888653
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.41 E-value=1.2e-12 Score=101.19 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+|||+|||+|..+..+++.+. +++++|+++.+++ ++.+|..+.. .++||+|+++...++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 4567899999999999999999765 9999999998553 5667766543 459999999743221
Q ss_pred h-C---------------------HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 161 L-F---------------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~-~---------------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
. + ..+++.++.++|||||.++++.... .+...+.+.+++.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--NGEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--CChHHHHHHHHhCCC
Confidence 1 1 3568999999999999988877653 346778888888887
No 60
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=1.8e-12 Score=103.69 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCCCCCCceeeEEccc--
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAH-- 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~i~~~~-- 156 (209)
...++.+|||+|||+|..+..++..+..+++++|+++.++ .++.+|+.+. +++++||+|+++.
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy 111 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPY 111 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCC
Confidence 3577899999999999999999887656999999998754 2566777653 4578999999962
Q ss_pred chhhh--------------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEAL--------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~--------------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..... ....++.++.++|||||+++++..+.. ....+.+.++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~ 177 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGL 177 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCC
Confidence 11100 135678899999999999888766542 45566777766665
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.41 E-value=1.3e-12 Score=112.20 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=73.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..++++.+|||+|||+|..+..+++. +. +|+|+|+|+++++ +...|..++ +++||.|++..+.
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ 238 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMF 238 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCch
Confidence 35688999999999999999999984 54 9999999998654 444555444 4789999998877
Q ss_pred hhh---CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL---FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~---~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+|+ ++..+++++.++|||||.+++...
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 776 347899999999999999988753
No 62
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.41 E-value=1.2e-12 Score=104.11 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=93.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHhc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~L 174 (209)
.....|.|+|||.+.++. .... +|...|+-+..-.++.+|+.+.|++|++.|+++++-.+...+..+++.|+.|+|
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiL 254 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERH-KVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRIL 254 (325)
T ss_pred cCceEEEecccchhhhhh---cccc-ceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHh
Confidence 667899999999988765 2333 899999998888999999999999999999998864444458899999999999
Q ss_pred ccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 175 KIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
||||.+++..-.+...+...|...+..+||-
T Consensus 255 k~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 255 KPGGLLYIAEVKSRFSDVKGFVRALTKLGFD 285 (325)
T ss_pred ccCceEEEEehhhhcccHHHHHHHHHHcCCe
Confidence 9999999998888888899999999999983
No 63
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.39 E-value=4.7e-12 Score=98.48 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=80.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...++.+|||+|||+|..+..+++. +..+|+++|+++.+++ ++.+|.. .++ .++||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECC
Confidence 3467889999999999999999884 4569999999998543 4455553 233 46899999865
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
... ....++.++.+.|||||++++.... ..+...+.+++++.++.
T Consensus 106 ~~~--~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 106 SGG--NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVS 150 (187)
T ss_pred Ccc--CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCC
Confidence 432 3567889999999999998775432 34567788888888873
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.38 E-value=6.6e-13 Score=103.98 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCC---CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLP---FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~---~~~~~fD~i~~~ 155 (209)
++..++||+|||+|.++..+++ .+..+++|+|+++.++ .++++|+.+++ ++++++|.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4567999999999999999998 4667999999998744 37788887643 456799999986
Q ss_pred cchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
.-..+. ....+++++.++|||||.+++.+.. ......+.+.+..++
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSEND 149 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCC
Confidence 322211 1267999999999999998777654 334555666666554
No 65
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.38 E-value=1.3e-11 Score=96.05 Aligned_cols=95 Identities=19% Similarity=0.101 Sum_probs=72.7
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC----CCcEEEcCCCCCC--------CCCCceeeEEccc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAH 156 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~i~~~~ 156 (209)
...++++.+|||+|||+|..+..+++. +.++|+++|+|+. .+.++++|+.+.+ +++++||+|++..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 345688999999999999999988873 4458999999985 3457788887643 4567899999853
Q ss_pred c--------hhhh----CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 157 L--------AEAL----FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 157 ~--------~~~~----~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
. ..+. ...+++.++.++|+|||++++...
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 1111 136889999999999999888653
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.38 E-value=3.2e-12 Score=102.67 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=75.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------------cEEEcCCCCCC-CCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLP-FFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------------~~~~~d~~~~~-~~~~~fD~i~~~~~~ 158 (209)
..++.+|||+|||+|..+..+++.+. +++++|+++.++ .+...++.+.+ ..+++||+|++.++.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45788999999999999999988764 899999998744 24556665554 345799999999888
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++. ++..+++++.+.|+|||.+++...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 877 899999999999999999887654
No 67
>PTZ00146 fibrillarin; Provisional
Probab=99.37 E-value=3.9e-12 Score=104.50 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=80.6
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCC-------------CcEEE
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL-------------PLVSR 136 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~-------------~~~~~ 136 (209)
+.|....+.+...+-.-+....++++.+|||+|||+|.++..+++. + .+.|+++|+++.+ +.++.
T Consensus 108 R~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~ 187 (293)
T PTZ00146 108 RVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPII 187 (293)
T ss_pred eeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEE
Confidence 3466666655544433333345689999999999999999999994 3 5799999999742 23677
Q ss_pred cCCCCC---CCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 137 ADPHNL---PFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 137 ~d~~~~---~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|+... ....++||+|++... .. +...++.++.+.|||||.+++....
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika 239 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKA 239 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEec
Confidence 787542 223468999999653 23 3455667999999999999986544
No 68
>PRK04266 fibrillarin; Provisional
Probab=99.37 E-value=5.7e-12 Score=100.86 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=78.2
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC-------------CcEEEcCCCCC----CCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------PLVSRADPHNL----PFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~-------------~~~~~~d~~~~----~~~~~~fD~i~ 153 (209)
..++++.+|||+|||+|..+..+++. +.++|+|+|+++.| +.++.+|+.+. ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 35689999999999999999999984 55699999999853 34667787652 22 35699998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecCC-------cccHHHHHHHhcccccc
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~-------~~~~~~~~~l~~~~~~~ 205 (209)
+... ..-....+++++.++|||||.+++.+.... ....+...+.++..||.
T Consensus 147 ~d~~-~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~ 204 (226)
T PRK04266 147 QDVA-QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFE 204 (226)
T ss_pred ECCC-ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCe
Confidence 6321 100124568999999999999999644311 11122345777777773
No 69
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.36 E-value=2.8e-12 Score=100.32 Aligned_cols=83 Identities=23% Similarity=0.258 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCC-C-CCCCCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHN-L-PFFDEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~-~-~~~~~~fD~i~~~~~~~~~-~~ 163 (209)
.++.+|||+|||+|..+..+++....+++|+|+++.++ +++++|+.+ + ++++++||+|+++++.+|+ ++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 67889999999999999999874334889999998643 577888876 4 4778899999999988888 99
Q ss_pred HHHHHHHHHhcccC
Q 028410 164 SRFVGEMERTVKIG 177 (209)
Q Consensus 164 ~~~l~~~~r~Lkpg 177 (209)
..+++++.|.++++
T Consensus 92 ~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 92 EEILDEMLRVGRHA 105 (194)
T ss_pred HHHHHHHHHhCCeE
Confidence 99999998887653
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=4.8e-12 Score=99.96 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=69.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
..+++.+|||+|||+|+.+..+++. + .++|+++|+++.++ .++.+|..+....+++||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 4578899999999999999999873 2 46999999998733 3677888765445679999999
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.....++ ..++.+.|||||++++.+..
T Consensus 149 ~~~~~~~-----~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 149 TAAASTI-----PSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ccCcchh-----hHHHHHhcCcCcEEEEEEcC
Confidence 7654433 25788999999999887654
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=4e-12 Score=98.12 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
....++||+|||.|.++..|+... .+++++|+|+.++ .+++.|+.+. .|+++||+|+++.+.+++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred cccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 556899999999999999999984 5999999999844 4888888775 478999999999988888
Q ss_pred -CH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 162 -FP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 162 -~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+. ..++..+...|+|||.+++....
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 33 46889999999999999888754
No 72
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.34 E-value=9.3e-12 Score=106.34 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc------------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL------------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~------------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.+|||+|||+|..+..+++ .+..+|+++|.|+.+++ +...|.... +++++||+|+|+-
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 346999999999999999988 45679999999987553 334444321 3456899999973
Q ss_pred chhh---h---CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 LAEA---L---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~---~---~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
-++. . ...+++.++.++|||||.++++....- .....+.++|+.+..+
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l-~y~~~L~~~fg~~~~v 360 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL-DYFHKLKKIFGNCTTI 360 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCc-CHHHHHHHHcCCceEE
Confidence 3221 2 136789999999999999999975542 2335677788776654
No 73
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.34 E-value=8.5e-12 Score=105.64 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
...+|||+|||+|..+..+++. +..+|+++|+|+.+++ +..+|.... .+++||+|+++..+|.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3568999999999999999984 5569999999987553 455565442 3678999999854443
Q ss_pred h------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 161 L------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
. ...++++++.+.|||||.++++.+..-.+ ...+.+.|+.++.
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y-~~~l~~~Fg~~~~ 322 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY-PDLLDETFGSHEV 322 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCCh-HHHHHHHcCCeEE
Confidence 1 35889999999999999999987764222 2455667876655
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.33 E-value=6e-12 Score=104.38 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=77.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|..+..+++.|..+|+++|+++.+++ +..++ ..+..+++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCH
Confidence 577999999999999999988887779999999988553 22222 223346799999997543
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
. ....++.++.++|||||.+++..- ...+...+.+.+.+.
T Consensus 236 ~--~l~~ll~~~~~~LkpgG~li~sgi--~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 236 E--VIKELYPQFSRLVKPGGWLILSGI--LETQAQSVCDAYEQG 275 (288)
T ss_pred H--HHHHHHHHHHHHcCCCcEEEEEeC--cHhHHHHHHHHHHcc
Confidence 3 236788999999999999776543 345677777877765
No 75
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=1.1e-11 Score=98.46 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=69.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|+.+..+++. + .++|+++|+++.++ .++.+|......+++.||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 5688999999999999999998884 3 36999999998743 47888887765567899999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..... ....+.+.|||||++++....
T Consensus 153 ~~~~~-----~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 153 AAGPD-----IPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CCccc-----chHHHHHhhCCCcEEEEEEcC
Confidence 43322 234677899999998887654
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.31 E-value=1.5e-11 Score=97.97 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCC-CCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFF-DEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~-~~~fD~i~~~~~~~ 159 (209)
.+.+|||+|||+|..+..+++.+. +++++|+++.++ .+...|+.+.+.. +++||+|++.++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 478999999999999999988654 799999987633 3455666665543 37899999998888
Q ss_pred hh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+. ++..++.++.++|+|||.+++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 88 899999999999999999887653
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.31 E-value=1.9e-11 Score=102.14 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=73.4
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeE
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVA 152 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i 152 (209)
....+++..+|||+|||+|..+..+++ .+..+++++|. +.+ +.++.+|+.+.++++ +|+|
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v 219 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAV 219 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEE
Confidence 333567889999999999999999988 46679999996 332 347888887766653 6999
Q ss_pred EcccchhhhCH---HHHHHHHHHhcccCcEEEEEEe
Q 028410 153 FTAHLAEALFP---SRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 153 ~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++.++.++.++ ..+++++++.|||||++++...
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98887776633 5789999999999999988843
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.29 E-value=1.6e-11 Score=99.36 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccc-
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHL- 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~- 157 (209)
.++.+|||+|||+|..+..+++. +..+++|+|+++.++ .+..+|+.+ ++++++||+|+++.-
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPY 164 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCC
Confidence 34569999999999999999984 556999999998743 367778766 456789999998511
Q ss_pred -----hhhh---------------------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 158 -----AEAL---------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 158 -----~~~~---------------------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.+.+ ....++.++.++|+|||.+++... ..+...+.+++.+.+|..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---YDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---ccHHHHHHHHHHhCCCCc
Confidence 0000 124678999999999999887654 456677888888888854
No 79
>PRK06202 hypothetical protein; Provisional
Probab=99.29 E-value=8.4e-12 Score=100.29 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc----C-CceEEEecCCCCCCc------------EEEcCCCCCCCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI----G-VADVTGVELMDSLPL------------VSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~----~-~~~v~~vD~s~~~~~------------~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..+++. | ..+++|+|+|+.+++ +...+...+++++++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56789999999999999888752 2 249999999998663 456666677777889999999999
Q ss_pred hhhh-CH--HHHHHHHHHhcc
Q 028410 158 AEAL-FP--SRFVGEMERTVK 175 (209)
Q Consensus 158 ~~~~-~~--~~~l~~~~r~Lk 175 (209)
.+|+ ++ ..+++++.|+++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC
Confidence 8888 43 579999999998
No 80
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.28 E-value=1.1e-11 Score=99.52 Aligned_cols=107 Identities=20% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCC--CCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~--~~~~~fD~i~~~ 155 (209)
....+|||+|||+|..+..+++. +..++++||+++.+. +++++|+.++. ....+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 45899999999999999999996 657999999999844 37888888754 344579999997
Q ss_pred c----------------chhh---hCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 156 H----------------LAEA---LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~----------------~~~~---~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
- ..+| .+.+++++...+.|||||.+.++.+. +...++.+++++.++
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~ 187 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNL 187 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCC
Confidence 0 1111 14588999999999999999998884 567788888888776
No 81
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.28 E-value=8.3e-12 Score=98.59 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=67.7
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEE----------------cCCCCCCCCCCceeeEEcccchhhh
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR----------------ADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~----------------~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
..++|+|||+|..++.++++ +.+|+|+|+|+.|+++.. .+..++--.+++.|+|++....|+.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 39999999999999888988 469999999999887321 1112222238999999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|..++++++.|+||+.|-++.+
T Consensus 114 dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEE
Confidence 9999999999999987744333
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.28 E-value=2.9e-11 Score=94.91 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=81.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc----------------EEEcCCCCC-CCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL----------------VSRADPHNL-PFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~----------------~~~~d~~~~-~~~~~~fD~i~ 153 (209)
.+.++.+|||+|||+|.++..++.. +.++|+++|+++.+++ ++.+|..+. +..++.||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 5578999999999999999998773 3469999999987443 555666552 22346899999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.. ...++..++.++.+.|||||++++... ..+......+.+++.+|
T Consensus 117 ~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 117 IGG--GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred ECC--CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 843 112578899999999999999876443 34566777778877776
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.28 E-value=3.8e-12 Score=103.54 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=78.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcC-----C-CC--CCCCCCceeeEEcccchhhhCHHH
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRAD-----P-HN--LPFFDEAFDVAFTAHLAEALFPSR 165 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d-----~-~~--~~~~~~~fD~i~~~~~~~~~~~~~ 165 (209)
..++.+|||+|||+|..+..+++.|..+|+|+|+++.+++....+ . .. ++..+.+||+|+++-..+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 368899999999999999988887766799999999977632111 1 11 222223799999864332 2367
Q ss_pred HHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 166 FVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
++.++.++|||||.+++... ...+...+.+.+.+.||
T Consensus 195 l~~~~~~~LkpgG~lilsgi--~~~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGI--LEEQADEVLEAYEEAGF 231 (250)
T ss_pred HHHHHHHhcCCCcEEEEEEC--cHhhHHHHHHHHHHCCC
Confidence 78999999999999877633 24567788888888887
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.27 E-value=2.5e-11 Score=102.54 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=76.4
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
...+++.+|||.|||+|.++...+..+ .+++|+|+++.++ .+.++|+.++++++++||+|+++.
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence 356889999999999999998877776 4999999998743 377899999998889999999962
Q ss_pred c-------hhh-h--CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 L-------AEA-L--FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~-------~~~-~--~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
- ..+ . ...+++.++.++|||||++++.+..
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 1 111 1 1478999999999999998888765
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.27 E-value=2.7e-11 Score=93.74 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++.+|||+|||+|..+..++..+ .+++++|+++.++ .++.+|..+ ++++++||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 577899999999999999999885 5999999998744 345666554 344568999998632
Q ss_pred hhh---------------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 158 AEA---------------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 ~~~---------------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
... . ....+++++.++|||||.+++..... .....+.+++.+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~ 166 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGF 166 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCC
Confidence 111 0 13668999999999999988877653 345667888888777
No 86
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=1.9e-11 Score=97.43 Aligned_cols=108 Identities=22% Similarity=0.248 Sum_probs=85.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------------------cEEEcCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------------------LVSRADPHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------------------~~~~~d~~~~~~~ 145 (209)
...++.+||+.|||.|..+.+|++.|+ +|+|+|+|+.++ .+.++|+.+++..
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 335678999999999999999999998 899999997633 3678888887632
Q ss_pred ---CCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecCCc--------ccHHHHHHHhcc
Q 028410 146 ---DEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECAG--------REIKQIVELFRT 201 (209)
Q Consensus 146 ---~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~~~--------~~~~~~~~l~~~ 201 (209)
.+.||+|+-...+.++.+ .+..+.+.+.|+|||.+++++...+. -...++.++|..
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC
Confidence 268999998877777743 78889999999999999988765321 245677778864
No 87
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.25 E-value=3.8e-11 Score=95.47 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=69.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++. + .++|+++|+++.++ .++.+|..+.....++||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 4578999999999999999999985 3 35799999998744 36778887654445789999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.... .+...+.+.|||||++++.+..
T Consensus 154 ~~~~-----~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 154 AAGP-----KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCcc-----cccHHHHHhcCcCcEEEEEEcC
Confidence 4332 2345688999999999887764
No 88
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.25 E-value=3.2e-11 Score=96.02 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++.+|||+|||+|..+..+++.+. +++|+|+++.++ .+.++|+.+.+ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35689999999999999999998754 999999998754 36677776664 78999999877
Q ss_pred hhhh---CHHHHHHHHHHhcccCcEEEE
Q 028410 158 AEAL---FPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 158 ~~~~---~~~~~l~~~~r~LkpgG~lil 182 (209)
.++. +...++.++.+.+++++.+.+
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6655 346788999999987766543
No 89
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.24 E-value=6e-12 Score=90.15 Aligned_cols=89 Identities=30% Similarity=0.372 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCC--CCCCceeeEEcccch
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLP--FFDEAFDVAFTAHLA 158 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~--~~~~~fD~i~~~~~~ 158 (209)
|.+|||+|||+|.++..+++.+..+++|+|+++..+ ++.++|..+.. +++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999997656999999999833 47788887764 778999999997221
Q ss_pred h--hh-------CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 E--AL-------FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~--~~-------~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
. .. ....+++++.+.|||||.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1 11 136889999999999999988875
No 90
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.2e-11 Score=100.24 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcC--------------CCCCCCC-CCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRAD--------------PHNLPFF-DEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d--------------~~~~~~~-~~~fD~i~~~~~~~ 159 (209)
+++.+|||+|||||.++++.++.|..+++|+|++|.+++.-.-+ ......+ .++||+|+++=+.+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~ 240 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE 240 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH
Confidence 69999999999999999999999998999999999866411111 1111223 36999999964433
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
. ...+..++.+.+||||.++++--- ..+.+.+.+.+.+.+|.
T Consensus 241 v--l~~La~~~~~~lkpgg~lIlSGIl--~~q~~~V~~a~~~~gf~ 282 (300)
T COG2264 241 V--LVELAPDIKRLLKPGGRLILSGIL--EDQAESVAEAYEQAGFE 282 (300)
T ss_pred H--HHHHHHHHHHHcCCCceEEEEeeh--HhHHHHHHHHHHhCCCe
Confidence 1 257788999999999997666422 34677888888877773
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.24 E-value=4.2e-11 Score=102.15 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC--CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL--PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~--~~~~~~fD~i~~~~ 156 (209)
..+..+||||||+|.++..+|. .+...++|+|+++.++ .++++|+..+ .++++++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4567999999999999999998 5667999999998744 3778888654 47889999999863
Q ss_pred chhhh-------CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 157 LAEAL-------FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 157 ~~~~~-------~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
-..+. ....++.++.|+|||||.+.+.+....
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 22211 126899999999999999888777643
No 92
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.23 E-value=6.4e-11 Score=93.20 Aligned_cols=113 Identities=24% Similarity=0.261 Sum_probs=94.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCC--CCCCCCceeeEEc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHN--LPFFDEAFDVAFT 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~--~~~~~~~fD~i~~ 154 (209)
.+.+.+|||.+.|-|+.+....+.|...|+.++.++..+ +++.||+.+ -.|+|++||+|+.
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 367999999999999999999999877999999998844 366777766 2478999999998
Q ss_pred c----cchhhhCHHHHHHHHHHhcccCcEEEEEEecCC-----cccHHHHHHHhccccccc
Q 028410 155 A----HLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-----GREIKQIVELFRTSSFTE 206 (209)
Q Consensus 155 ~----~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~-----~~~~~~~~~l~~~~~~~~ 206 (209)
. ....++...++..|++|+|||||.++-.+..++ -+-.+.+.+.+++.||.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 5 233355779999999999999999988887764 467788999999999974
No 93
>PLN03075 nicotianamine synthase; Provisional
Probab=99.23 E-value=1.2e-10 Score=96.11 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhH-HHHH-h-cCCceEEEecCCCCC-----------------CcEEEcCCCCCCCCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEV-MAFN-S-IGVADVTGVELMDSL-----------------PLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~-~~la-~-~~~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.++.+|+|||||.|.++ ..++ . .+.++++|+|+++++ +.|..+|+.+.+-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 47899999999977443 3333 3 356799999999863 44888888876433578999999
Q ss_pred ccchhh--hCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 155 AHLAEA--LFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 155 ~~~~~~--~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
..+.+. -++.++++++.+.|+|||.+++-..
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 833333 2789999999999999999777653
No 94
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.23 E-value=5.6e-11 Score=98.39 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=76.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
..++.+|||+|||||.++...++.|.++|+|+|+++.+++ +..... .....++||+|+++=+..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--EDLVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--SCTCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--cccccccCCEEEECCCHH
Confidence 3778899999999999999999999889999999998553 222222 223458999999964333
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
. ...+...+.++|||||.++++--- ..+...+.+.|++ +|
T Consensus 237 v--L~~l~~~~~~~l~~~G~lIlSGIl--~~~~~~v~~a~~~-g~ 276 (295)
T PF06325_consen 237 V--LLELAPDIASLLKPGGYLILSGIL--EEQEDEVIEAYKQ-GF 276 (295)
T ss_dssp H--HHHHHHHCHHHEEEEEEEEEEEEE--GGGHHHHHHHHHT-TE
T ss_pred H--HHHHHHHHHHhhCCCCEEEEcccc--HHHHHHHHHHHHC-CC
Confidence 2 256778899999999997765322 4577888888876 76
No 95
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.21 E-value=8.6e-11 Score=97.28 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA-- 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~-- 155 (209)
.++.+|||+|||+|..+..++.. +..+++++|+|+.++ .++.+|+.+ ++++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 34579999999999999999984 446999999998744 367777654 2345689999996
Q ss_pred cc--------hhh--hC--------------HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 156 HL--------AEA--LF--------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 156 ~~--------~~~--~~--------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
++ ... .+ ...++.++.++|||||++++-+.. +...+.+++...++.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPFT 268 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCCc
Confidence 11 000 01 256788999999999998776653 235788888777653
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.20 E-value=1.3e-10 Score=90.97 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=71.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCC-CCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHN-LPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~-~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..++.. +.++|+++|+++.++ .++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 4468899999999999999999873 446999999998744 355666644 22212345666542
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
. ..+...+++++.+.|||||++++.... ......+.+.++
T Consensus 117 ~---~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~ 156 (196)
T PRK07402 117 G---GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLA 156 (196)
T ss_pred C---CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHH
Confidence 2 124678999999999999998877654 334444555554
No 97
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.20 E-value=9.9e-11 Score=92.81 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=67.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..+++.+|||+|||+|..+..+++.. ++++++|+++.++ ++..+|..+...+.++||+|++...
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 55788999999999999999888864 4899999998743 3667776553223578999998654
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
..+ +..++.+.|+|||++++...
T Consensus 154 ~~~-----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APE-----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chh-----hhHHHHHhcCCCcEEEEEEc
Confidence 332 24567899999999988877
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.19 E-value=1.3e-10 Score=99.95 Aligned_cols=107 Identities=9% Similarity=0.082 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc--------------EEEcCCCCCCCC-CCceeeEEccc--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL--------------VSRADPHNLPFF-DEAFDVAFTAH-- 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~-~~~fD~i~~~~-- 156 (209)
.++.+|||+|||+|..+..++. .+..+++++|+|+.+++ ++++|+.+..++ +++||+|+|+-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 4567999999999999999887 45569999999998553 677887654332 46899999962
Q ss_pred chh---h-------------h----C----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAE---A-------------L----F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~---~-------------~----~----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.. . + + ...++.++.+.|+|||.+++... ..+...+.+++...+|
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---~~Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---FDQGAAVRGVLAENGF 398 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---ccHHHHHHHHHHHCCC
Confidence 110 0 0 1 24667777889999999776554 4677788888887776
No 99
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.3e-10 Score=95.22 Aligned_cols=110 Identities=18% Similarity=0.094 Sum_probs=81.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
....+.+|||+|||.|..+..+++ .|..+++-+|.|..+++ +...|..... ++ +||+|+|+-
T Consensus 155 ~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-~~-kfd~IisNP 232 (300)
T COG2813 155 PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-EG-KFDLIISNP 232 (300)
T ss_pred CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-cc-cccEEEeCC
Confidence 335556999999999999999999 56789999999987553 3444443332 23 999999984
Q ss_pred chhhh-C-----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 LAEAL-F-----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 ~~~~~-~-----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
-+|.- + ..+++.+..+.|++||.+.++.+. .-.-...+.++|+.++.+
T Consensus 233 Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~-~l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 233 PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR-HLPYEKKLKELFGNVEVL 286 (300)
T ss_pred CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC-CCChHHHHHHhcCCEEEE
Confidence 33322 1 268999999999999999999883 233455677788876654
No 100
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.17 E-value=6.2e-12 Score=98.63 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=81.2
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------EEEcCCCCC-C-CCCCceee
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHNL-P-FFDEAFDV 151 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------~~~~d~~~~-~-~~~~~fD~ 151 (209)
.+..++......+-.++||+|||||..+..+... ...++|+|+|++|++ ..+.+...+ + ..++.||+
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3444444444566789999999999999999986 359999999999986 123333221 1 45789999
Q ss_pred EEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 152 i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|.+..|..++ +...++.-....|+|||.+.+++...
T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 9999999999 89999999999999999999988764
No 101
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=88.59 Aligned_cols=107 Identities=20% Similarity=0.352 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCChhHHHHHhcCC-ceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGV-ADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~-~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
-.+|||+|||.|.....|++-|+ +..+|+|.|++++ .|.+.|+.+..+..++||+|.--....
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999999654 3599999999844 488999998888888888887642222
Q ss_pred hh--C-------HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 160 AL--F-------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 160 ~~--~-------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.+ . +...+..+.+.|+|||.++|... +....++.+.|...+|+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---N~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---NFTKDELVEEFENFNFEY 200 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEec---CccHHHHHHHHhcCCeEE
Confidence 11 1 23456778899999999766544 678889999998887743
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.17 E-value=2.4e-10 Score=93.87 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEccc-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAH- 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~~- 156 (209)
..++.+|||+|||+|..+..++.. +..+++++|+++.++ .+..+|+.+. +++++||+|+++.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 357789999999999999999984 456999999998643 3666776442 2357999999851
Q ss_pred -ch----h--------------------hh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 157 -LA----E--------------------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 157 -~~----~--------------------~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
+. . .+ ....++.++.+.|||||.+++... ..+...+.+++...+|.
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---YDQGEAVRALLAAAGFA 256 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---chHHHHHHHHHHhCCCc
Confidence 10 0 01 135678888999999999887553 44566788888877764
No 103
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.16 E-value=3.9e-10 Score=86.45 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=82.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.++++++++|||||||..+.+++.. +.++|+++|-++++++ ++.+++.+.--...+||.||...
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 6699999999999999999999963 5689999999988553 66777665311222799999865
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
- .....+++.+...|||||+++.-... -+......+.+++.++
T Consensus 111 g---~~i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 111 G---GNIEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGG 153 (187)
T ss_pred C---CCHHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCC
Confidence 4 24788999999999999996655443 4567777777877776
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.16 E-value=1.9e-10 Score=93.64 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc------------EEEcCCCCC-C-CCCCceeeEEccc--ch
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL------------VSRADPHNL-P-FFDEAFDVAFTAH--LA 158 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~------------~~~~d~~~~-~-~~~~~fD~i~~~~--~~ 158 (209)
++.+|||+|||+|..+..+++ .+..+++++|+|+.+++ ++++|+.+. + ...++||+|+++- +.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999987 44459999999998553 677887652 2 1135799999972 11
Q ss_pred ----hh-------------h----C----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 159 ----EA-------------L----F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 159 ----~~-------------~----~----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
.. + + ..+++..+.++|||||.+++.... .+...+.+++++++|
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~~~l~~~g~ 233 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAVEAFARAGL 233 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHHHHHHHCCC
Confidence 00 0 0 247778888999999999887764 456778888888777
No 105
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.16 E-value=1.4e-10 Score=93.17 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVG 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~ 168 (209)
...++||+|+|.|..+..++.. +.+|++.|.|+.|.. +.+.+..++.-.+.+||+|.|.++.... +|..+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 4678999999999999999986 569999999999764 4455555555456789999998877666 9999999
Q ss_pred HHHHhcccCcEEEEEE
Q 028410 169 EMERTVKIGGVCMVLM 184 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~ 184 (209)
++++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999999885
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.15 E-value=1.3e-10 Score=79.80 Aligned_cols=85 Identities=33% Similarity=0.417 Sum_probs=69.5
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCC-CCCceeeEEcccchhh-h
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPF-FDEAFDVAFTAHLAEA-L 161 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~-~~~~fD~i~~~~~~~~-~ 161 (209)
+++|+|||+|..+..+++.+..+++++|+++..+ .+..+|+.+... ..++||+|+++...++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 5899999999999999884456999999987632 366777777553 5678999999887766 4
Q ss_pred -CHHHHHHHHHHhcccCcEEEEE
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~ 183 (209)
....+++.+.+.+||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 7799999999999999998765
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.15 E-value=2e-10 Score=95.15 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=74.5
Q ss_pred CeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcc--cc-
Q 028410 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTA--HL- 157 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~--~~- 157 (209)
.+|||+|||+|..+..++.. +..+|+++|+|+.++ .++++|+.+ ++++++||+|+++ ++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 69999999999999999984 446999999999744 366777655 3444589999996 11
Q ss_pred ----------hhh------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc-cccc
Q 028410 158 ----------AEA------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSSF 204 (209)
Q Consensus 158 ----------~~~------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~-~~~~ 204 (209)
..+ + ....++.++.+.|+|||.+++-+. +.+...+.+++. ..+|
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g---~~q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG---NWQQKSLKELLRIKFTW 262 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC---ccHHHHHHHHHHhcCCC
Confidence 000 0 235688899999999999877665 345566666666 3344
No 108
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.15 E-value=2.7e-11 Score=96.46 Aligned_cols=107 Identities=25% Similarity=0.351 Sum_probs=80.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------------EEEcCCCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------VSRADPHNLPFF 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------------~~~~d~~~~~~~ 145 (209)
...++.+||..|||.|.....|++.|+ +|+|+|+|+.+++ +.++|+.+++-.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 457788999999999999999999998 9999999987442 567888887643
Q ss_pred C-CceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecCC---------cccHHHHHHHhc
Q 028410 146 D-EAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFR 200 (209)
Q Consensus 146 ~-~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~~---------~~~~~~~~~l~~ 200 (209)
. ++||+|+-...+..+. ..+..+.+.++|||||.+++++-... .-...++.++|.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~ 180 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG 180 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc
Confidence 3 5799999987777663 48889999999999999544443311 235566777777
No 109
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.14 E-value=2.3e-10 Score=99.83 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=77.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc--------------E--EEcCCCCCCC--CCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL--------------V--SRADPHNLPF--FDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------------~--~~~d~~~~~~--~~~~fD~i~ 153 (209)
...++.+|||+|||+|..+..+++ .+.++|+++|+++.+++ + ..+|....+. ++++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 346789999999999999999998 45579999999998543 2 4455544443 567899999
Q ss_pred cc------cchhhh-C----------------HHHHHHHHHHhcccCcEEEEEEecCCcccHHH-HHHHhcc
Q 028410 154 TA------HLAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQ-IVELFRT 201 (209)
Q Consensus 154 ~~------~~~~~~-~----------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~-~~~l~~~ 201 (209)
+. .+.... + ..+++.++.++|||||.+++++.+....+... +..++++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 63 122111 1 36799999999999999999988764433333 3344443
No 110
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.12 E-value=3.2e-10 Score=94.61 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCCCCc----------------EEEcCCCC-CCCCCC----ceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSLPL----------------VSRADPHN-LPFFDE----AFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~~~~----------------~~~~d~~~-~~~~~~----~fD~ 151 (209)
.++.+|||+|||+|..+..+++.. ..+++++|+|+.|++ ++++|+.+ .+++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 567899999999999999998842 249999999998642 46788876 444332 2334
Q ss_pred EEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 152 AFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 152 i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+++....+++ +...++++++++|+|||.+++.+...
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 4444444444 34678999999999999988876553
No 111
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.11 E-value=3.9e-10 Score=94.30 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=74.2
Q ss_pred CeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc--c-
Q 028410 98 SKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH--L- 157 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~--~- 157 (209)
.+|||+|||+|..+..++. .+..+|+++|+|+.++ .++.+|+.+ ++++++||+|+++- +
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 6899999999999999988 4556999999998744 367778654 23456899999961 1
Q ss_pred -------hhh---------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 158 -------AEA---------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 158 -------~~~---------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
... + ....+++++.+.|+|||.+++-+.. . ...+.++|...++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~---~-~~~~~~~~~~~~~ 279 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN---S-RVHLEEAYPDVPF 279 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc---C-HHHHHHHHhhCCC
Confidence 000 0 1257789999999999998776553 2 3357777776655
No 112
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=5e-10 Score=97.98 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=79.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC----CCCCceee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP----FFDEAFDV 151 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~----~~~~~fD~ 151 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++.+|+.+++ +.+++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 3467899999999999999999884 346999999998744 36778887765 44678999
Q ss_pred EEcc------cchhhh-C----------------HHHHHHHHHHhcccCcEEEEEEecCCccc-HHHHHHHhcc
Q 028410 152 AFTA------HLAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEECAGRE-IKQIVELFRT 201 (209)
Q Consensus 152 i~~~------~~~~~~-~----------------~~~~l~~~~r~LkpgG~lil~~~~~~~~~-~~~~~~l~~~ 201 (209)
|++. .+.... + ..+++.++.+.|||||+++.++......+ ...+.+++++
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 9963 111111 1 36789999999999999988877654433 3334445544
No 113
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=4.1e-10 Score=98.76 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=77.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA- 155 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~- 155 (209)
..++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++.+|+.+++ ++++||.|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 367899999999999999988873 346999999999854 36777887765 56789999963
Q ss_pred ---c--ch-------hhhC----------HHHHHHHHHHhcccCcEEEEEEecCCcccHHH-HHHHhcc
Q 028410 156 ---H--LA-------EALF----------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQ-IVELFRT 201 (209)
Q Consensus 156 ---~--~~-------~~~~----------~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~-~~~l~~~ 201 (209)
. +. +... ..+++.++.+.|||||++++.+.+....+... +.+++++
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 1 10 0111 24689999999999999999987765444333 3344443
No 114
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.09 E-value=3.4e-10 Score=92.80 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=76.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
..+++.+|||+|||+|..+..+++. +.+.|+++|+++.++ .+...|..+++...+.||.|++.
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 3478899999999999999999883 246999999998744 35667776665555679999973
Q ss_pred ----c--chh------------h---h--CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 156 ----H--LAE------------A---L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 156 ----~--~~~------------~---~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
. +.. . + ...+++.++.+.|||||+++.++......+.....+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~ 212 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVD 212 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHH
Confidence 1 100 0 0 125689999999999999998887765554444444
No 115
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.09 E-value=4.5e-10 Score=89.79 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++.+|||+|||+|..+..+++.+. .++|+|+|+.++ .+..+| ++..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 35678999999999999999998765 799999998754 245555 3344688999999887
Q ss_pred hhhh---CHHHHHHHHHHhcccCcE
Q 028410 158 AEAL---FPSRFVGEMERTVKIGGV 179 (209)
Q Consensus 158 ~~~~---~~~~~l~~~~r~LkpgG~ 179 (209)
.+|. +...+++++.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 7664 235677888776654443
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=99.08 E-value=5.6e-10 Score=90.98 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc----------EEEcCCCCCCCCCCceeeEEcccchhhh--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~----------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-- 161 (209)
....+|||+|||+|..+..++.. +..+|+++|+++.+++ ++++|+.+... +++||+|+++.-..+.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINT 141 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCc
Confidence 45679999999999999888774 3359999999998654 77888887653 5789999996222211
Q ss_pred -------------------CHHHHHHHHHHhcccCcEEEEEEecCC----cccHHHHHHHhcccccc
Q 028410 162 -------------------FPSRFVGEMERTVKIGGVCMVLMEECA----GREIKQIVELFRTSSFT 205 (209)
Q Consensus 162 -------------------~~~~~l~~~~r~LkpgG~lil~~~~~~----~~~~~~~~~l~~~~~~~ 205 (209)
...+++.....+|+|+|.+.++..... .-...+..++++.+||+
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 124677888899999999888876643 34677788899988885
No 117
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=9.6e-10 Score=87.91 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=88.3
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~ 153 (209)
..+.++.+|+|.|.|||..+.+|+. . +.++|+++|+-++. +.+..+|+.+..+++ .||.|+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence 3679999999999999999999997 3 56899999998872 336678888877655 999997
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
. .-.+|..++..+.+.|||||. +++..+..+|...+.+.++..+|++
T Consensus 169 L----Dmp~PW~~le~~~~~Lkpgg~--~~~y~P~veQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 169 L----DLPDPWNVLEHVSDALKPGGV--VVVYSPTVEQVEKTVEALRERGFVD 215 (256)
T ss_pred E----cCCChHHHHHHHHHHhCCCcE--EEEEcCCHHHHHHHHHHHHhcCccc
Confidence 7 223699999999999999999 4555555778888888888888865
No 118
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.08 E-value=3.5e-10 Score=94.68 Aligned_cols=83 Identities=8% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++ +..+|+.+ .+++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---l~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---LSGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---cCCCcCEEEEc
Confidence 578999999999999999999875 9999999998653 23334332 25889999998
Q ss_pred cchhhh-CH--HHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEAL-FP--SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~-~~--~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.+|. +. ..+++.+.+ +.+||. ++.+
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~ 249 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRL-IISF 249 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence 877666 22 345555554 455555 4443
No 119
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.08 E-value=4.2e-10 Score=100.01 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEEcc--c
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTA--H 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~~~--~ 156 (209)
++.+|||+|||+|..+..++. .+..+|+++|+|+.+++ ++.+|+.+ ++++++||+|+++ +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 356899999999999999887 45569999999987443 45666543 2345689999996 1
Q ss_pred ch---------hh--------h--------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LA---------EA--------L--------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~---------~~--------~--------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+. +. + ....++.++.++|+|||.+++.+. ..+...+.+++.+.++
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~~q~~~v~~~~~~~g~ 286 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---FKQEEAVTQIFLDHGY 286 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---CchHHHHHHHHHhcCC
Confidence 10 00 0 124567788899999999877544 5577778888877765
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=4.1e-10 Score=98.34 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=79.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC-CCCCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP-FFDEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~-~~~~~fD~i~~ 154 (209)
...++.+|||+|||+|..+.++++. +.++|+++|+++.++ .+.++|..+++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3478899999999999999999884 357999999999854 36778887765 45678999997
Q ss_pred c------cchh-------h--------h--CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHH-HHHhc
Q 028410 155 A------HLAE-------A--------L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI-VELFR 200 (209)
Q Consensus 155 ~------~~~~-------~--------~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~-~~l~~ 200 (209)
. .+.. . + ...+++.++.+.|||||.++.++.+....+.... .+++.
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 3 1110 0 0 1266789999999999999998887654444443 34443
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=6.6e-10 Score=97.02 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=77.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC--------------cEEEcCCCCCC--CCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLP--FFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~--------------~~~~~d~~~~~--~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++.+|+.+++ +++++||.|+++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 3478899999999999999999985 336999999999854 36788887754 346789999953
Q ss_pred c------chh------hh-C----------HHHHHHHHHHhcccCcEEEEEEecCCc-ccHHHHHHHhcc
Q 028410 156 H------LAE------AL-F----------PSRFVGEMERTVKIGGVCMVLMEECAG-REIKQIVELFRT 201 (209)
Q Consensus 156 ~------~~~------~~-~----------~~~~l~~~~r~LkpgG~lil~~~~~~~-~~~~~~~~l~~~ 201 (209)
. +.. +. . ..+++.++.+.|||||.+++.+..... +....+..++++
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 1 100 00 1 247899999999999999988865432 333344445543
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=8.2e-10 Score=91.15 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=73.8
Q ss_pred eEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEcc--cchhh
Q 028410 99 KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTA--HLAEA 160 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~--~~~~~ 160 (209)
+|||+|||||..+..++.. +..+|+|+|+|+.+++ ++++|.... . .++||+|++| ++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 8999999999999999984 5579999999998553 223332221 1 3489999998 33222
Q ss_pred ---h-------CH--------------HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 161 ---L-------FP--------------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 161 ---~-------~~--------------~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
. +| ..++.++.+.|+|||.+++-.+ ..+...+.++|.+.+
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~q~~~v~~~~~~~~ 254 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LTQGEAVKALFEDTG 254 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CCcHHHHHHHHHhcC
Confidence 0 12 5677889999999998766655 456888888888888
No 123
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.03 E-value=4.6e-10 Score=85.29 Aligned_cols=55 Identities=25% Similarity=0.172 Sum_probs=49.7
Q ss_pred CcEEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 132 PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 132 ~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++++++|+.++|+++++||+|++..+.+++ ++..++++++|+|||||.+++....
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 568999999999999999999998888877 9999999999999999999877544
No 124
>PRK00811 spermidine synthase; Provisional
Probab=99.03 E-value=8e-10 Score=91.44 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------------EEEcCCCC-CCCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------------VSRADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------------~~~~d~~~-~~~~~~~fD~i 152 (209)
.++.+||++|||+|..+.++.+. +..+|+++|+++.+++ ++.+|+.+ +...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 56789999999999999999885 5679999999988543 34455443 22246789999
Q ss_pred Ecccchh-----hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++..... ++...++++.+.+.|+|||.+++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9853221 223478899999999999997765443
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=1.5e-09 Score=91.10 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=66.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC---------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||+|||+|..+..+++. + .+.|+++|+++.++ .++.+|..+.+...++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 4578899999999999999999984 3 24799999998743 36678876655555789999985
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
..... ....+.+.|+|||++++...
T Consensus 157 ~g~~~-----ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 157 VGVDE-----VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CchHH-----hHHHHHHhcCCCCEEEEEeC
Confidence 33221 23456789999999887654
No 126
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.02 E-value=6.4e-10 Score=89.85 Aligned_cols=109 Identities=23% Similarity=0.264 Sum_probs=82.3
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCC----------------CCcEEEcCCCCCCCC---CCcee
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDS----------------LPLVSRADPHNLPFF---DEAFD 150 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~---~~~fD 150 (209)
..+.+|.+|+|.|.|+|.++..++. . +.++|+..|+.++ .+.+...|+.+..|+ ++.+|
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence 3779999999999999999999998 3 6789999999887 234778888764443 36899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhc-ccCcEEEEEEecCCcccHHHHHHHhccccccc
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTV-KIGGVCMVLMEECAGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~L-kpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~ 206 (209)
.|+. ++ -+|..++..+.++| ||||+ +++..+.-+|...+.+.++.++|..
T Consensus 116 avfL-Dl---p~Pw~~i~~~~~~L~~~gG~--i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 116 AVFL-DL---PDPWEAIPHAKRALKKPGGR--ICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEE-ES---SSGGGGHHHHHHHE-EEEEE--EEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred EEEE-eC---CCHHHHHHHHHHHHhcCCce--EEEECCCHHHHHHHHHHHHHCCCee
Confidence 9987 22 25889999999999 89999 5566666889999999999998854
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.4e-09 Score=83.79 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=68.7
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEccc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..++++.+|||||||+|+.+.-|++.. ++|+++|..+. .+.+.++|...-=-+...||.|+...
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEee
Confidence 377999999999999999999999973 49999999887 24477888766322458999998853
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
....+ | ..+.+.||+||++++.+..
T Consensus 147 aa~~v-P----~~Ll~QL~~gGrlv~PvG~ 171 (209)
T COG2518 147 AAPEV-P----EALLDQLKPGGRLVIPVGS 171 (209)
T ss_pred ccCCC-C----HHHHHhcccCCEEEEEEcc
Confidence 32222 2 3466789999999999883
No 128
>PRK04457 spermidine synthase; Provisional
Probab=99.01 E-value=7.5e-10 Score=90.63 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCC-CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNL-PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~-~~~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|..+..+++ .+..+++++|+++++++ ++.+|+.+. +-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 5678999999999999999987 46679999999988443 455665432 22246899999853
Q ss_pred chh-----hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
... ++...++++++.+.|+|||++++....
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 221 123479999999999999998875443
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.01 E-value=9.4e-10 Score=86.99 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=64.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++.+|||||||+|+.+..++.. + .+.|+++|+++. .+.++.+|....--....||.|++.
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence 5899999999999999999999984 3 468999999987 2347888876543346789999986
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...... | ..+.+.||+||++++.+..
T Consensus 149 ~a~~~i-p----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 149 AAVPEI-P----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp SBBSS-------HHHHHTEEEEEEEEEEESS
T ss_pred eccchH-H----HHHHHhcCCCcEEEEEEcc
Confidence 433322 2 4577789999999988875
No 130
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.98 E-value=1.8e-09 Score=93.61 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCC---CCCCcEE----------EcCCCCCCCCCCceeeEEcccc--hh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELM---DSLPLVS----------RADPHNLPFFDEAFDVAFTAHL--AE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s---~~~~~~~----------~~d~~~~~~~~~~fD~i~~~~~--~~ 159 (209)
..-..+||+|||+|.++.+|.+.+. .+..+-++ +..++|. ..-..++||++++||+|.|+.. ..
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccc
Confidence 3446899999999999999999755 33333222 2222221 2224679999999999999753 33
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
+.+..-++-|+.|+|||||++++.....+
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhcccceeehhhhhhccCceEEecCCccc
Confidence 33445688999999999999877765443
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=2.6e-09 Score=93.76 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=76.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC--CCCCceeeEEc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP--FFDEAFDVAFT 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~--~~~~~fD~i~~ 154 (209)
..++.+|||+|||+|..+..+++. +.++|+++|+++.++ .++++|+.+++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 467889999999999999999883 457999999998743 47788887753 33 78999997
Q ss_pred cc------chhh---------------h--CHHHHHHHHHHhcccCcEEEEEEecCCcccHH-HHHHHhcc
Q 028410 155 AH------LAEA---------------L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIK-QIVELFRT 201 (209)
Q Consensus 155 ~~------~~~~---------------~--~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~-~~~~l~~~ 201 (209)
.. +..+ + ...+++.++.+.|||||.++.++.+....+.. .+..++++
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 41 1000 0 12468999999999999998877665433333 33444444
No 132
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.96 E-value=1.8e-09 Score=89.79 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=73.3
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEc
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
....+-.+..|||+|||+|.++...|+.|..+|+++|.|.. .++++++.++++.+|.++.|+|++
T Consensus 54 ~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 54 QNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred cchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEee
Confidence 33445778999999999999999999999899999999876 345889999998887899999999
Q ss_pred ccchhhhCHHH----HHHHHHHhcccCcEEE
Q 028410 155 AHLAEALFPSR----FVGEMERTVKIGGVCM 181 (209)
Q Consensus 155 ~~~~~~~~~~~----~l~~~~r~LkpgG~li 181 (209)
-++...+..+. .+-.=-+.|+|||.++
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 77666553333 3334458999999753
No 133
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.95 E-value=2.1e-09 Score=84.13 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCCChhHHHHH----h---c--C-CceEEEecCCCCCC--------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFN----S---I--G-VADVTGVELMDSLP-------------------------------- 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la----~---~--~-~~~v~~vD~s~~~~-------------------------------- 132 (209)
.+..+|+..||++|.-...+| + . + .-+|+|+|+|+.++
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 467999999999996555543 2 1 1 23899999999833
Q ss_pred -----------cEEEcCCCCCCCCCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEecC
Q 028410 133 -----------LVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 133 -----------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.|.+.|..+.+.+.+.||+|+|.+|+.++++ .++++.+++.|+|||++++...+.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 2677777774445789999999999888854 789999999999999988776654
No 134
>PRK03612 spermidine synthase; Provisional
Probab=98.91 E-value=2.8e-09 Score=95.19 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCC-ceEEEecCCCCCCc----------------------EEEcCCCC-CCCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGV-ADVTGVELMDSLPL----------------------VSRADPHN-LPFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~-~~v~~vD~s~~~~~----------------------~~~~d~~~-~~~~~~~fD 150 (209)
+++.+|||+|||+|..+.++.+.+. .+++++|+++++++ ++.+|..+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5678999999999999999988643 69999999887554 23334333 112347899
Q ss_pred eEEcccchh------hhCHHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 151 VAFTAHLAE------ALFPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 151 ~i~~~~~~~------~~~~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
+|+++.... ++...++++.+.+.|||||.+++....+ ....+..+.+.+++.+|
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999963221 2244679999999999999987765432 23344556666666666
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.89 E-value=2.9e-09 Score=81.52 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=65.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...++.+|||+|||+|..+..+++.+ .+++++|+++.+ ++++.+|+.++++++.+||.|+++- ..
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py 87 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PY 87 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-Cc
Confidence 45778899999999999999999984 599999999863 3478899999888777899999853 22
Q ss_pred hhCHHHHHHHHHHh--cccCcEEEEEE
Q 028410 160 ALFPSRFVGEMERT--VKIGGVCMVLM 184 (209)
Q Consensus 160 ~~~~~~~l~~~~r~--LkpgG~lil~~ 184 (209)
+. ....+..+.+. +.++|.+++-.
T Consensus 88 ~~-~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 88 NI-STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cc-HHHHHHHHHhcCCCcceEEEEEEH
Confidence 22 23444444433 34677765543
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.89 E-value=5.5e-09 Score=96.40 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC-CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL-PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~-~~~~~~fD~i~~~~ 156 (209)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++ ++++|+.+. .-..++||+|+++-
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 467899999999999999999877668999999998443 566676542 11156899999961
Q ss_pred -----------chhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 -----------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 -----------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.... +..+++..+.++|+|||.++++..... +....+.+...|+
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---~~~~~~~~~~~g~ 673 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---FKMDEEGLAKLGL 673 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---CChhHHHHHhCCC
Confidence 11112 346788889999999999877655432 2223555555544
No 137
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.88 E-value=5.4e-09 Score=88.12 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------------EEEcCCCCCC----CCC
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------------VSRADPHNLP----FFD 146 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------------------~~~~d~~~~~----~~~ 146 (209)
++.+|||+|||-|....-....+...++|+|+++..++ ++.+|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 88999999999888777776666789999999987332 5677766421 333
Q ss_pred --CceeeEEcccchhhh-C----HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 147 --EAFDVAFTAHLAEAL-F----PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 147 --~~fD~i~~~~~~~~~-~----~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
..||+|-|-..+|+. . ...++.++.+.|||||+++..+...
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 599999986555544 2 3669999999999999999888763
No 138
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.87 E-value=1e-08 Score=88.47 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----------------cEEEcCCCCCC--C--CCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHNLP--F--FDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----------------~~~~~d~~~~~--~--~~~~fD~i~ 153 (209)
.++.+|||+|||+|.++...+..+..+|+++|+|+.++ .++++|+.+.- + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 56889999999999999876665666999999998844 25667765531 1 246899999
Q ss_pred cccc---------hhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 154 TAHL---------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 154 ~~~~---------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
++-- .... ...+++....++|+|||.++.+..+. ..+...+.+..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~-~~~~~~f~~~v 353 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG-LMTSDLFQKII 353 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC-cCCHHHHHHHH
Confidence 9621 1111 23556677889999999987665442 33444444433
No 139
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=8.1e-09 Score=81.82 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=68.1
Q ss_pred eEEEEcCCCChhHHHHHh-cCC--ceEEEecCCCCCCcEE--------------EcCCCC----CCCCCCceeeEEcccc
Q 028410 99 KVLCVSAGAGHEVMAFNS-IGV--ADVTGVELMDSLPLVS--------------RADPHN----LPFFDEAFDVAFTAHL 157 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~-~~~--~~v~~vD~s~~~~~~~--------------~~d~~~----~~~~~~~fD~i~~~~~ 157 (209)
+||++|||.|.....+.+ .+. -.+.+.|.|+.+++.+ +.|+.. -+.+.+++|+|++-.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 899999999999988877 332 5899999999977521 223322 3456799999999887
Q ss_pred hhhhCH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+..+.| ..++.++.++|||||.+++--+.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 777744 77889999999999997776544
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=98.86 E-value=4.4e-09 Score=88.91 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCcE----------------------EEcCCCC-CCCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPLV----------------------SRADPHN-LPFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~~----------------------~~~d~~~-~~~~~~~fD 150 (209)
.++.+||++|||+|..+..+.+. +..+|+++|++++++++ +.+|+.+ +.-.+++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 55679999999999999988885 45799999999996653 2233322 122356899
Q ss_pred eEEcccch------hhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 151 VAFTAHLA------EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 151 ~i~~~~~~------~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|++.... ..+...++++.+.+.|+|||.++.....
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99986211 1124478999999999999997665443
No 141
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.85 E-value=8.2e-09 Score=80.89 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCC---------------CcEEEcCCCC-CC--CCCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSL---------------PLVSRADPHN-LP--FFDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~---------------~~~~~~d~~~-~~--~~~~~fD~i~~~~ 156 (209)
+...+||||||.|.+...+|. .+...++|+|++... +.++.+|+.. +. ++++++|-|+.+.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 344999999999999999998 577799999999873 3478888887 22 4678999998852
Q ss_pred ch---------hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 157 LA---------EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 157 ~~---------~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
-. .-+-...++..+.++|+|||.+.+.+.. ..-.....+.|..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEE 148 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHH
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHh
Confidence 11 1113488999999999999997777665 4445556666665
No 142
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=2.5e-08 Score=77.93 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=66.7
Q ss_pred CCCC-eEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EEEcCCCCCCC--------CCCc
Q 028410 95 FNHS-KVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VSRADPHNLPF--------FDEA 148 (209)
Q Consensus 95 ~~~~-~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~--------~~~~ 148 (209)
.+.. +|||||||||..+.++++ .+.-+..-.|+++.... -+..|+...+. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 599999999999999998 57667777787776321 23445554322 2469
Q ss_pred eeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEE
Q 028410 149 FDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 149 fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~ 183 (209)
||.|+|.++.|.. ....+++...++|+|||.+++.
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 9999999888766 3488999999999999996655
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.84 E-value=2.2e-08 Score=80.69 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC----------------cEEEcCCCCC-C-----CCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP----------------LVSRADPHNL-P-----FFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~-~-----~~~~~fD 150 (209)
.++.+|||+|||+|+.+..++. . +.++++++|+++++. +++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 6788999999999999998887 3 457999999999733 3667777652 1 1246899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
+|+...-- -.....+.++.+.|||||.+++
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 99984321 1245778999999999998665
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.83 E-value=1.5e-08 Score=83.38 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.++.+||++|||+|..+..+.+.+ ..+++++|+++++++ ++.+|..+ +.-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 445699999999999999888753 568999999988553 22223221 111246899999
Q ss_pred cccchh-----hhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 154 TAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+..... .+...++++.+.+.|+|||.+++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 864311 12257889999999999999877643
No 145
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=9.9e-09 Score=81.39 Aligned_cols=90 Identities=20% Similarity=0.324 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-------------EE------------------------
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-------------VS------------------------ 135 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-------------~~------------------------ 135 (209)
...+..+|||||-+|..+..+++ .+...+.|+||++..+. ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 36688999999999999999999 57779999999987332 00
Q ss_pred --EcCCCC----------------CCCCCCceeeEEcc------cchhhh-CHHHHHHHHHHhcccCcEEEEE
Q 028410 136 --RADPHN----------------LPFFDEAFDVAFTA------HLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 136 --~~d~~~----------------~~~~~~~fD~i~~~------~~~~~~-~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..|+.+ +.+....||+|+|- |+.++- -..++++.+.+.|.|||++++-
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000000 11345789999995 333333 3589999999999999996553
No 146
>PLN02672 methionine S-methyltransferase
Probab=98.79 E-value=1.7e-08 Score=95.77 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC-------------------------------cEEEcCCCCCCC
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP-------------------------------LVSRADPHNLPF 144 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~-------------------------------~~~~~d~~~~~~ 144 (209)
+.+|||+|||+|..+..+++ .+..+|+|+|+|+.++ .++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988 4556999999999743 345566554321
Q ss_pred C-CCceeeEEcc--cc------------hh--------------hhC-----------HHHHHHHHHHhcccCcEEEEEE
Q 028410 145 F-DEAFDVAFTA--HL------------AE--------------ALF-----------PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 145 ~-~~~fD~i~~~--~~------------~~--------------~~~-----------~~~~l~~~~r~LkpgG~lil~~ 184 (209)
. ..+||+|+++ ++ .. .++ ..+++.+..++|||||.+++-+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1369999997 11 10 001 1667888899999999877666
Q ss_pred ecCCcccHHHHH-HHhcccccc
Q 028410 185 EECAGREIKQIV-ELFRTSSFT 205 (209)
Q Consensus 185 ~~~~~~~~~~~~-~l~~~~~~~ 205 (209)
+ ..+-+.+. ++|.+.+|.
T Consensus 279 G---~~q~~~v~~~l~~~~gf~ 297 (1082)
T PLN02672 279 G---GRPGQAVCERLFERRGFR 297 (1082)
T ss_pred C---ccHHHHHHHHHHHHCCCC
Confidence 5 45667777 588887763
No 147
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.79 E-value=3e-08 Score=76.91 Aligned_cols=119 Identities=21% Similarity=0.245 Sum_probs=86.7
Q ss_pred HHHHHHHHhcccCCCCC-eEEEEcCCCChhHHHHHh-cCCceEEEecCCCC---------------CCcEEEcCCCCCCC
Q 028410 82 AHFFKHLQGKSLLFNHS-KVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------------LPLVSRADPHNLPF 144 (209)
Q Consensus 82 ~~~~~~l~~~~~~~~~~-~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~ 144 (209)
.++++.+.-...+.... +++|+|+|.|.-+..++- .|..+++.+|.+.+ .+.++.+.+++ +.
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~ 111 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE 111 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc
Confidence 34555555555555555 899999999999999987 57779999999887 23477777777 55
Q ss_pred CCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+||+|++..+.. ...++.-+.+.+++||.+++.-+....++..+..+.+...+.
T Consensus 112 ~~~~fd~v~aRAv~~---l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~ 168 (184)
T PF02527_consen 112 YRESFDVVTARAVAP---LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGL 168 (184)
T ss_dssp TTT-EEEEEEESSSS---HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCE
T ss_pred cCCCccEEEeehhcC---HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCC
Confidence 678999999987765 778888889999999998777665555666666666666554
No 148
>PHA03412 putative methyltransferase; Provisional
Probab=98.79 E-value=9.3e-09 Score=82.14 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCChhHHHHHhc----CCceEEEecCCCCCC----------cEEEcCCCCCCCCCCceeeEEccc--c--
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAH--L-- 157 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~----~~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~i~~~~--~-- 157 (209)
.+.+|||+|||+|.++..+++. +..+|+++|+++.++ .++.+|+...++ +++||+|+++- .
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 3679999999999999998863 345899999999844 378888877665 57999999971 1
Q ss_pred ---h---hh---hCHHHHHHHHHHhcccCcE
Q 028410 158 ---A---EA---LFPSRFVGEMERTVKIGGV 179 (209)
Q Consensus 158 ---~---~~---~~~~~~l~~~~r~LkpgG~ 179 (209)
. .+ .....++....+++++|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 01 1246688888887777664
No 149
>PLN02366 spermidine synthase
Probab=98.79 E-value=1.8e-08 Score=84.26 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCCC--CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHNL--PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~~--~~~~~~fD~i 152 (209)
.++.+||++|||.|..+.++++. +..+|+.+|+++.+++ ++.+|.... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 66889999999999999999986 3568999999987443 445554331 1235689999
Q ss_pred Ecccch-----hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.... ..+...++++.+.+.|+|||.++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 985322 12235789999999999999976543
No 150
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=6.1e-09 Score=82.03 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
+....++|+|||-|.....+...+..+++-+|.|-.|++ ..++|-+.++|.++++|+|+++-..|+.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 566789999999999999999877889999999988664 5678888899999999999998777777
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.+..+.+++..|||+|.++-..-
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHh
Confidence 889999999999999999766543
No 151
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.78 E-value=2.6e-08 Score=82.29 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCChhHHHHHh----c-C----CceEEEecCCCCCCc---------------------------------
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----I-G----VADVTGVELMDSLPL--------------------------------- 133 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~-~----~~~v~~vD~s~~~~~--------------------------------- 133 (209)
...+|+..||+||.-...+|- . + .-+|+|+|+|+.+++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999965554432 1 1 237999999987332
Q ss_pred -------------EEEcCCCCCCCC-CCceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 134 -------------VSRADPHNLPFF-DEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 134 -------------~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|.+.|+.+.+++ .+.||+|+|.++..+++ ..++++.+.+.|+|||++++-..+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 445555554443 58899999999888873 4889999999999999987776654
No 152
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.77 E-value=7.1e-08 Score=78.84 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCCChhHHHHH----hc-C-----CceEEEecCCCCCCc--------------------------------
Q 028410 96 NHSKVLCVSAGAGHEVMAFN----SI-G-----VADVTGVELMDSLPL-------------------------------- 133 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la----~~-~-----~~~v~~vD~s~~~~~-------------------------------- 133 (209)
...+|+-.||+||.-...+| +. + .-+|+|+|++...++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 58899999999995544443 32 2 248999999987332
Q ss_pred ------------EEEcCCCCCCCCCCceeeEEcccchhhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 134 ------------VSRADPHNLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 134 ------------~~~~d~~~~~~~~~~fD~i~~~~~~~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|.+.|....++..+.||+|+|.+|..++| ..+++..++..|+|||++++-..+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 45555555443567899999999988884 3889999999999999988877664
No 153
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.77 E-value=1.6e-08 Score=81.00 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------EEEcCCCCCCCCC-----CceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLPFFD-----EAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------~~~~d~~~~~~~~-----~~fD~i~~~~~~ 158 (209)
.++.++||+|||+|.++..+++.|..+|+|+|+++.++. +...|+......+ ..+|++|.+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS--- 150 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFIS--- 150 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEee---
Confidence 467899999999999999999988789999999996553 2333444332111 356666553
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
....+..+.+.|+| |.+++.+.
T Consensus 151 ----~~~~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 151 ----LISILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred ----hHhHHHHHHHHhCc-CeEEEEcC
Confidence 22357889999999 88777763
No 154
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.75 E-value=3.4e-08 Score=82.66 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEc-CCCCCCCCC
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRA-DPHNLPFFD 146 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~-d~~~~~~~~ 146 (209)
.+.+.++.+...++|..|||=-||||.+..+..-.|. .++|.|++..|+. +... |+.++|+++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC
Confidence 3444556667889999999999999999999888886 9999999998764 3445 999999999
Q ss_pred CceeeEEccc-----c---hhhh--CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 147 EAFDVAFTAH-----L---AEAL--FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 147 ~~fD~i~~~~-----~---~~~~--~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++||.|.+.. . ...+ -..++++.+.++||+||++++...
T Consensus 263 ~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 263 NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999951 1 0111 147889999999999999877776
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.75 E-value=5.4e-08 Score=74.84 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=68.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc------------------EEEcCCCCCC----CCCCce
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL------------------VSRADPHNLP----FFDEAF 149 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~------------------~~~~d~~~~~----~~~~~f 149 (209)
...++.+|||+|||+|..+..++.. +..+|+..|.++ .++ +...|..+.. ....+|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 4477899999999999999999997 667999999887 332 2333332211 234689
Q ss_pred eeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 150 DVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 150 D~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
|+|+++.+.+.- ....++.-+.+.++|+|.+++..... ......|.+.+++
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R-~~~~~~F~~~~~k 172 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR-RKSEQEFFDRLKK 172 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH--
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe-cHHHHHHHHHhhh
Confidence 999999876655 66888999999999999966665543 4445556665543
No 156
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.75 E-value=2.6e-08 Score=78.30 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcc--cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCC
Q 028410 80 SYAHFFKHLQGKS--LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNL 142 (209)
Q Consensus 80 ~~~~~~~~l~~~~--~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~ 142 (209)
....++..+.... ......++||.|||-|+.+..+...-+.+|..+|+.+..++ +.+...+++
T Consensus 37 gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f 116 (218)
T PF05891_consen 37 GSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF 116 (218)
T ss_dssp HHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-
T ss_pred HHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc
Confidence 3444555443221 12357899999999999998775522579999999887443 444555555
Q ss_pred CCCCCceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecCCc-------------ccHHHHHHHhccccc
Q 028410 143 PFFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECAG-------------REIKQIVELFRTSSF 204 (209)
Q Consensus 143 ~~~~~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~~~-------------~~~~~~~~l~~~~~~ 204 (209)
..+.++||+|++-++..|+ +..++|+.+...|+|||.+++=.+.... -....+.++|+++|+
T Consensus 117 ~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 117 TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp ---TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence 4446799999999999888 4588999999999999997765443321 156778999999987
No 157
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.75 E-value=1.2e-07 Score=74.46 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCCCCC---CCceeeEEcccchhhh-CH---HHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFF---DEAFDVAFTAHLAEAL-FP---SRFVG 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~~~~---~~~fD~i~~~~~~~~~-~~---~~~l~ 168 (209)
...++|||||=+...... ..+.-+|+.||+++....+.+.|+.+.|+| +++||+|.++-|..++ +| -+++.
T Consensus 51 ~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~ 128 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR 128 (219)
T ss_pred ccceEEeecccCCCCccc--ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH
Confidence 347999999976554433 334457999999999999999999998764 6899999998666655 44 78999
Q ss_pred HHHHhcccCcE-----EEEEEecC-----CcccHHHHHHHhccccccc
Q 028410 169 EMERTVKIGGV-----CMVLMEEC-----AGREIKQIVELFRTSSFTE 206 (209)
Q Consensus 169 ~~~r~LkpgG~-----lil~~~~~-----~~~~~~~~~~l~~~~~~~~ 206 (209)
.+.+.|+|+|. ++++.+.+ .+.....+.+++..-||.+
T Consensus 129 r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 129 RAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEE
Confidence 99999999999 88887653 4456667777777777744
No 158
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.74 E-value=1.1e-07 Score=76.74 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=73.7
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCC--------CCCcEEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
....+.+..+|+|||+|+|.++..+++ +|..+++..|.-+ ..++++.+|+. -++|. +|+++..++.|.
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHD 170 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGG
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhh
Confidence 334557778999999999999999988 6777999998732 24568899998 66666 999999999887
Q ss_pred hC---HHHHHHHHHHhcccC--cEEEEEEec
Q 028410 161 LF---PSRFVGEMERTVKIG--GVCMVLMEE 186 (209)
Q Consensus 161 ~~---~~~~l~~~~r~Lkpg--G~lil~~~~ 186 (209)
.. -..+|+++++.|+|| |+++|...-
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 73 377899999999999 999888655
No 159
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.4e-07 Score=73.77 Aligned_cols=129 Identities=14% Similarity=0.106 Sum_probs=84.6
Q ss_pred hccCchhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCC----CCcEEEcCCC
Q 028410 67 RLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPH 140 (209)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~----~~~~~~~d~~ 140 (209)
.-|+++++++..+.... ...++++..|+|+|+-+|.+++.+++. + .+.|+|+|+.|. .+.++++|++
T Consensus 23 ~gyRSRAa~KL~el~~k-------~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~ 95 (205)
T COG0293 23 EGYRSRAAYKLLELNEK-------FKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDIT 95 (205)
T ss_pred ccccchHHHHHHHHHHh-------cCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeecc
Confidence 34455555544433332 235589999999999999999999984 3 346999999986 3568999998
Q ss_pred CCC--------CCCCceeeEEccc---------chhhh--CH-HHHHHHHHHhcccCcEEEEEEecCC--cccHHHHHHH
Q 028410 141 NLP--------FFDEAFDVAFTAH---------LAEAL--FP-SRFVGEMERTVKIGGVCMVLMEECA--GREIKQIVEL 198 (209)
Q Consensus 141 ~~~--------~~~~~fD~i~~~~---------~~~~~--~~-~~~l~~~~r~LkpgG~lil~~~~~~--~~~~~~~~~l 198 (209)
+-+ +....+|+|+|.. +++.. .. ..++.-...+|+|||.+++-+...+ +...+.+...
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh
Confidence 854 3456689999841 12211 22 3344555679999999887765543 2234444445
Q ss_pred hccc
Q 028410 199 FRTS 202 (209)
Q Consensus 199 ~~~~ 202 (209)
|+.-
T Consensus 176 F~~v 179 (205)
T COG0293 176 FRKV 179 (205)
T ss_pred hcee
Confidence 5543
No 160
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.72 E-value=4e-08 Score=80.98 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------------EEEcCCCC------CCCCC
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------VSRADPHN------LPFFD 146 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------------~~~~d~~~------~~~~~ 146 (209)
.+++..++|+|||-|..+.-.-+.|.+.++|+||.+..++ ++.+|... +++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4888999999999998887777767889999999987443 67777653 45566
Q ss_pred CceeeEEcccchhhh-----CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 147 EAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+||+|-|-..+|+. ...-++.++.+.|||||+++-.++..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 669999885444433 34778999999999999987777653
No 161
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=3.3e-07 Score=74.12 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------EE----EcCCCC-CCCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------VS----RADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------~~----~~d~~~-~~~~~~~fD~i 152 (209)
..+..|||+|||+|..+..++. .+...++++|.|+.++. ++ .+|..+ .+..+++.|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 4455999999999999999988 57779999999998553 33 233322 34567999999
Q ss_pred Ecc--cchh---------------------hh----CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTA--HLAE---------------------AL----FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~--~~~~---------------------~~----~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|+ ++.+ .. ....++.-..|.|+|||.+.+-+.+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 997 1110 00 0133556778999999999888774
No 162
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.65 E-value=8.5e-08 Score=84.20 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=65.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCC----CCCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHN----LPFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~----~~~~~~~fD~i~ 153 (209)
...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.++ .++.+|+.+ .++.+++||+|+
T Consensus 294 ~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 294 DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 34678899999999999999999875 5999999999855 377888754 234567899999
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++--.. ...+.+..+.+ ++|++.+++.++.
T Consensus 373 ~dPPr~--g~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 373 LDPPRA--GAAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred ECcCCc--ChHHHHHHHHh-cCCCeEEEEEeCh
Confidence 852111 12344555544 6899987777654
No 163
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.63 E-value=3.7e-08 Score=76.11 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCC----CCcEEEcCCCCCC--------CC--CCceeeEEcccc--
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----LPLVSRADPHNLP--------FF--DEAFDVAFTAHL-- 157 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~--~~~fD~i~~~~~-- 157 (209)
++.++||+||++|.++..+.+.+ .+.|+|+|+.+. .+.++++|+.+.. ++ .+.||+|+|...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 45999999999999999999975 579999999876 3335566654321 11 268999999531
Q ss_pred -h------hhhC---HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 158 -A------EALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 158 -~------~~~~---~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
. +... ....+.-+.+.|||||.+++-+...
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 1 1111 1344455668899999877766554
No 164
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.61 E-value=8.2e-08 Score=75.41 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCC-CCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHN-LPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~-~~~~~~~fD~i~~~~~~ 158 (209)
.++.+|||+|||+|.++..++..+..+|+++|.++..+ .++.+|+.+ ++...++||+|+++--.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45679999999999999875554557999999998743 356667654 22224579999996432
Q ss_pred hhhCHHHHHHHHHH--hcccCcEEEEEEec
Q 028410 159 EALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~~~~~~l~~~~r--~LkpgG~lil~~~~ 186 (209)
..-....++..+.+ .|+|+|.+++....
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21223445555554 37899987777654
No 165
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.57 E-value=2.3e-07 Score=73.52 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCCCc----------------EEE-cCCCC-CC-CCCCceeeE
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSLPL----------------VSR-ADPHN-LP-FFDEAFDVA 152 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~~~----------------~~~-~d~~~-~~-~~~~~fD~i 152 (209)
+.+..+|||+|.+.|+.+.+++. .+ .++++++|+++++.+ .+. +|..+ +. ...++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 36899999999999999999998 44 679999999998443 444 35443 22 457999999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|..+-- .+...++..+.+.|+|||.+++-
T Consensus 137 FIDadK--~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDADK--ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCCh--hhCHHHHHHHHHHhCCCcEEEEe
Confidence 983211 14578899999999999997654
No 166
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.57 E-value=1.8e-07 Score=77.69 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
-.+..|||+|||+|.++...++.|..+|++++-|+. .+.++.|.++++.+ .++.|++++-.+..
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence 457899999999999999999988899999998864 23478899999887 46899999964443
Q ss_pred hhCHHHHH---HHHHHhcccCcEEEEEEecC---CcccHHHHHHHhccccc
Q 028410 160 ALFPSRFV---GEMERTVKIGGVCMVLMEEC---AGREIKQIVELFRTSSF 204 (209)
Q Consensus 160 ~~~~~~~l---~~~~r~LkpgG~lil~~~~~---~~~~~~~~~~l~~~~~~ 204 (209)
-+..++++ -..+|.|||.|.++=.++.. .......+.+-|++.+|
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhh
Confidence 33333333 45679999999976555442 23344556666666554
No 167
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.56 E-value=1.7e-07 Score=78.74 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCCCC-CCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPF-FDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~-~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|.++..+++.+ .+|+|+|+++.++ +++++|+.++.. .+++||+|+++---.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 46899999999999999999976 5999999999844 377888776432 345799999852111
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
-+ ... +.++...++|++.+++.+..
T Consensus 252 G~-~~~-~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 252 GI-GKE-LCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred Cc-cHH-HHHHHHHcCCCeEEEEECCc
Confidence 01 122 22334446787765555443
No 168
>PLN02476 O-methyltransferase
Probab=98.54 E-value=5.4e-07 Score=74.09 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC----------------cEEEcCCCC-CC-C----CCCce
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP----------------LVSRADPHN-LP-F----FDEAF 149 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~----------------~~~~~d~~~-~~-~----~~~~f 149 (209)
..+..+|||+|+|+|+.+.+++. . +.++++++|.+++.. +++.+|+.+ ++ + .+++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 36789999999999999999998 3 356899999999733 366777655 21 1 24689
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+||...-- -+....+..+.+.|+|||.+++-
T Consensus 196 D~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDADK--RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 999984321 13577788889999999996653
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.53 E-value=2.7e-07 Score=72.81 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCCC----------------CcEEEcCCCCC-C-----CCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDSL----------------PLVSRADPHNL-P-----FFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-----~~~~~fD 150 (209)
.+..+||||||++|+.+.++++ .+ .++|+++|++++. ++++.+|+.+. + .+.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 5788999999999999999998 43 4799999999873 33677776541 1 1246899
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+||...-- -+....+..+.+.|+|||.+++-
T Consensus 124 ~VFiDa~K--~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 124 FVFIDADK--RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEESTG--GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcccc--cchhhHHHHHhhhccCCeEEEEc
Confidence 99985421 14566778888999999986554
No 170
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2e-07 Score=72.53 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cC--CceEEEecCCCCCC-----------------------
Q 028410 79 TSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IG--VADVTGVELMDSLP----------------------- 132 (209)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~--~~~v~~vD~s~~~~----------------------- 132 (209)
..++..+..|. ..+.++.++||+|+|||+++.-++. .+ .+..+|||.-++.+
T Consensus 67 ~mha~~le~L~--~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 67 HMHATALEYLD--DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHH--HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 33445555442 1359999999999999999998886 32 23458888777633
Q ss_pred --cEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 133 --LVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 133 --~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.++++|....--+...||.|++.. ...+..+++...|+|||.+++....
T Consensus 145 ~l~ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred ceEEEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhccCCeEEEeecc
Confidence 267888888766789999998852 2344567788889999999888775
No 171
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.52 E-value=5e-07 Score=73.80 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=89.6
Q ss_pred HhHHHHHHHHHHHhccc----CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-------------------
Q 028410 77 QVTSYAHFFKHLQGKSL----LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------------------- 133 (209)
Q Consensus 77 ~~~~~~~~~~~l~~~~~----~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~------------------- 133 (209)
+...+..++..+...-. -+.+.+||--|||.|+++..+|..|+ .+.|.|.|--|+-
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~P 111 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYP 111 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEec
Confidence 33344555555543322 25578999999999999999999998 9999999876431
Q ss_pred ------------------------------------EEEcCCCCCCCCC---CceeeEEcccchhhh-CHHHHHHHHHHh
Q 028410 134 ------------------------------------VSRADPHNLPFFD---EAFDVAFTAHLAEAL-FPSRFVGEMERT 173 (209)
Q Consensus 134 ------------------------------------~~~~d~~~~~~~~---~~fD~i~~~~~~~~~-~~~~~l~~~~r~ 173 (209)
...||+.+..-++ ++||+|+.+.+.... +..+.+..+.++
T Consensus 112 f~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~l 191 (270)
T PF07942_consen 112 FVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHL 191 (270)
T ss_pred ceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHH
Confidence 2344444433333 799999998766655 789999999999
Q ss_pred cccCcEEEEEEecC-----C---------cccHHHHHHHhcccccc
Q 028410 174 VKIGGVCMVLMEEC-----A---------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 174 LkpgG~lil~~~~~-----~---------~~~~~~~~~l~~~~~~~ 205 (209)
|||||. ++-++.. + .-+..+++++..+.||.
T Consensus 192 LkpgG~-WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~ 236 (270)
T PF07942_consen 192 LKPGGY-WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFE 236 (270)
T ss_pred hccCCE-EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCE
Confidence 999994 5555432 1 12567788888888773
No 172
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.50 E-value=7e-07 Score=78.64 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------cEEEcCCCCCC-CCCCceeeEEc-
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------LVSRADPHNLP-FFDEAFDVAFT- 154 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------~~~~~d~~~~~-~~~~~fD~i~~- 154 (209)
.+++.+|||++||+|.-+.++++. +.+.++++|+++..+ .+...|...++ ...+.||.|+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 478999999999999999999983 457999999998833 24456665542 23467999995
Q ss_pred ---cc--chhh----------------h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 155 ---AH--LAEA----------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 155 ---~~--~~~~----------------~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
+. +... . -..+++.+..+.|||||.++.++.+....+.....+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~ 255 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCL 255 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHH
Confidence 31 1110 0 126788999999999999988888765555555444
No 173
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.48 E-value=3.5e-07 Score=80.04 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=62.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------------cEEEcCCCCC----CCCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNL----PFFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------------~~~~~d~~~~----~~~~~~fD~i~ 153 (209)
...++.+|||+|||+|.++..+++.. .+|+|+|+++.++ +++.+|+.+. ++.+++||+|+
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 44677899999999999999999864 4999999999854 3778887652 23456799998
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..---. .-...+++.+. .++|++.+++.+
T Consensus 368 ~dPPr~-G~~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 368 LDPPRK-GCAAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred ECcCCC-CCCHHHHHHHH-hcCCCEEEEEcC
Confidence 742111 11244555544 488988655543
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.48 E-value=2.3e-07 Score=76.39 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=50.3
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------cEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+. +|+|+|+++.++ +++++|+.++++++..+|.|+++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 457889999999999999999999764 999999999754 36788888887654335777775
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.48 E-value=3.3e-07 Score=73.32 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=67.9
Q ss_pred CeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC---CCCCCceeeEEcccch
Q 028410 98 SKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL---PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~---~~~~~~fD~i~~~~~~ 158 (209)
-.+||||||.|.+...+|+ .|...++|||+....+ .+++.|+..+ -+++++.|-|+.+.-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999 5778999999987722 2556666552 1355699999885322
Q ss_pred hhh---------CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 159 EAL---------FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 159 ~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
-+. -...+++.+.++|||||.+.+.+...
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 111 23789999999999999977776654
No 176
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.47 E-value=1.1e-07 Score=81.01 Aligned_cols=91 Identities=26% Similarity=0.245 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
..++..++|+|||.|....+++......++|+|.++... .++.+|+.+.|+++++||.+-+..+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 477789999999999999999997656999999987622 2788899999999999999999888
Q ss_pred hhhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 158 AEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 158 ~~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..|. ++..+++|+.|++||||+.+...
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 8888 99999999999999999965543
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.46 E-value=7e-07 Score=78.27 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCChhHHHHHhc-----CCceEEEecCCCC----------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~-----~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
+..|+|+|||+|.++...++. +..+|++||-|+. .+.++.+|++++..+ .++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 578999999999998776553 2469999999986 334899999998874 499999994
Q ss_pred cchhhh---CHHHHHHHHHHhcccCcEEE
Q 028410 156 HLAEAL---FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 156 ~~~~~~---~~~~~l~~~~r~LkpgG~li 181 (209)
.+.... -..+++....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 332211 23567888899999999753
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.45 E-value=3.8e-07 Score=74.51 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=50.2
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCCceeeEEcc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
...++.+|||+|||+|..+..+++.+ .+++++|+++.+ +.++.+|+.+++++ .||.|+++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 45788999999999999999999985 499999999763 34788898887765 48999885
No 179
>PLN02823 spermine synthase
Probab=98.44 E-value=5.9e-07 Score=75.93 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCC-CCCCCCceeeEE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~i~ 153 (209)
.+..+||.+|+|.|..+.++.+. +..+++.+|++++.++ ++.+|..+ +...+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45689999999999999998884 5678999999998554 33344333 222357899999
Q ss_pred cccch-------hhhCHHHHHH-HHHHhcccCcEEEEEEe
Q 028410 154 TAHLA-------EALFPSRFVG-EMERTVKIGGVCMVLME 185 (209)
Q Consensus 154 ~~~~~-------~~~~~~~~l~-~~~r~LkpgG~lil~~~ 185 (209)
+.-.. .++...++++ .+.+.|+|||.+++-..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 86221 2234577888 89999999999766543
No 180
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.43 E-value=3.9e-07 Score=71.85 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=75.8
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC-------------cEEE
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP-------------LVSR 136 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~-------------~~~~ 136 (209)
+.|....+.+...+-.-++.-.++++.+||.+|+.+|...-+++.. + .+.|+++++|+... --+.
T Consensus 49 R~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl 128 (229)
T PF01269_consen 49 RVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPIL 128 (229)
T ss_dssp EEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEE
T ss_pred eecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeee
Confidence 3466666666655544444557799999999999999999999994 4 78999999998622 2467
Q ss_pred cCCCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 137 ADPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 137 ~d~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|+.... .--+.+|+|++. +.+.-+.+-+..+....||+||.++++...
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~D-VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQD-VAQPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE--SSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCCChHHhhcccccccEEEec-CCChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 7876532 223589999983 333223456678888999999999999865
No 181
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.42 E-value=5.6e-08 Score=75.54 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEcccchhhh-CHHHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l 167 (209)
..+.++||+|+|.|..+..++.. +.+|++.+.|..|.+ +-+....+..-.+-+||+|.|.++.... +|-+++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL 189 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLL 189 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHH
Confidence 44589999999999999999985 458999999988765 2122222222234579999998766544 999999
Q ss_pred HHHHHhccc-CcEEEEEEecC----------C----------------cccHHHHHHHhcccccc
Q 028410 168 GEMERTVKI-GGVCMVLMEEC----------A----------------GREIKQIVELFRTSSFT 205 (209)
Q Consensus 168 ~~~~r~Lkp-gG~lil~~~~~----------~----------------~~~~~~~~~l~~~~~~~ 205 (209)
+.++.+|.| .|++++..--+ + .++...+.++|++|||.
T Consensus 190 ~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~ 254 (288)
T KOG3987|consen 190 EDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYR 254 (288)
T ss_pred HHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCch
Confidence 999999999 88877763211 0 13566788999999983
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.40 E-value=1.8e-06 Score=65.03 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=76.3
Q ss_pred HHhcccCCCCCeEEEEcCCCChhHHHHHhcC--CceEEEecCCCC----------CCcEEEcCCCCCC-----CCCCcee
Q 028410 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----------LPLVSRADPHNLP-----FFDEAFD 150 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~--~~~v~~vD~s~~----------~~~~~~~d~~~~~-----~~~~~fD 150 (209)
+...-....+.-|||+|.|||-++.++..+| ..+++++|.|++ ...++.||+.++. +.+..||
T Consensus 40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeee
Confidence 3333455778899999999999999998864 358999999988 3347888888765 5678899
Q ss_pred eEEccc-c-hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 151 VAFTAH-L-AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 151 ~i~~~~-~-~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|+|.- + .... -..++++++...|.+||.++.....
T Consensus 120 ~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 120 SVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 999962 1 1111 3478899999999999998888776
No 183
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=7.9e-07 Score=68.34 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.-.+..|+|+|||||.++...+-.|...|+++|+++++++ +..+|+.+. +..+|.++++
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 3567889999999999999999888789999999998554 677777766 4678888887
No 184
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.38 E-value=1.4e-06 Score=74.86 Aligned_cols=93 Identities=17% Similarity=0.044 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC-C---CCCCceeeEEc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL-P---FFDEAFDVAFT 154 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~-~---~~~~~fD~i~~ 154 (209)
.+.+|||+-|-||.++.+.+.-|..+||+||.|...++ ++++|+.++ . -...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 39999999999999999999988889999999998553 667776552 1 23459999999
Q ss_pred c---------cchhhh-CHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 155 A---------HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 155 ~---------~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
. ...... +..+++....++|+|||.++++.+...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 5 222222 568889999999999999888877653
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.36 E-value=1.4e-06 Score=67.32 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=63.9
Q ss_pred HhcccCCCCCeEEEEcCCCChhHHHHHhc--CCc--------eEEEecCCCCCC----------------cEEEcCCCCC
Q 028410 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVA--------DVTGVELMDSLP----------------LVSRADPHNL 142 (209)
Q Consensus 89 ~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~--------~v~~vD~s~~~~----------------~~~~~d~~~~ 142 (209)
......+++..++|--||+|.+..+.+.. ... +++|.|++++++ .+.+.|+.++
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence 33456688999999999999999888763 222 388999999855 3778899999
Q ss_pred CCCCCceeeEEccc-----chh--hh--CHHHHHHHHHHhcccCcEEEEEE
Q 028410 143 PFFDEAFDVAFTAH-----LAE--AL--FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 143 ~~~~~~fD~i~~~~-----~~~--~~--~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.++++|.|+++- +.. .. -...+++++.+++++ ..+++..
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 98889999999971 111 11 126678899999999 4333333
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.34 E-value=2.3e-06 Score=69.64 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=54.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-------------cEEEcCCCCCCCCCCcee---eEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------LVSRADPHNLPFFDEAFD---VAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~~fD---~i~~~~ 156 (209)
...++.+|||+|||+|..+..+++.+. .++++|+++.++ .++.+|+.+.+++ .+| .|++ +
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvs-N 101 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVS-N 101 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEE-c
Confidence 457789999999999999999999764 799999998743 3678888887764 466 6655 3
Q ss_pred chhhhCHHHHHHHHHH
Q 028410 157 LAEALFPSRFVGEMER 172 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r 172 (209)
+..+. ...++.++..
T Consensus 102 lPy~i-~~~il~~ll~ 116 (253)
T TIGR00755 102 LPYNI-SSPLIFKLLE 116 (253)
T ss_pred CChhh-HHHHHHHHhc
Confidence 43333 3344444443
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.34 E-value=9.7e-07 Score=78.70 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCC--CCCCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNL--PFFDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~--~~~~~~fD~i~~~~ 156 (209)
..+..+||||||.|.+...+|. .+...++|+|+....+ .++..|+..+ -++++++|-|+.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 5678999999999999999998 5777999999987622 2444454322 26788999998863
Q ss_pred chhh-----h----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 157 LAEA-----L----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 157 ~~~~-----~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
-+-+ . -...++..+.++|||||.+.+.+...+ -+....+.+..++
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~--y~~~~~~~~~~~~ 479 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN--YFYEAIELIQQNG 479 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH--HHHHHHHHHHhCC
Confidence 2211 1 238899999999999999777666533 3444455555443
No 188
>PRK04148 hypothetical protein; Provisional
Probab=98.33 E-value=2.7e-06 Score=62.33 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCCCh-hHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCCCCCC-CCceeeEEcccchhhhCHH
Q 028410 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDSLP--------LVSRADPHNLPFF-DEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~-~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~~~ 164 (209)
.++.+++|||||+|. .+..|++.|+ +|+++|+++..+ .+++.|+.+.++. -..+|+|.+..- |.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~ 88 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PR 88 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CH
Confidence 456899999999996 8888998887 999999999854 5889999887653 477999988432 34
Q ss_pred HHHHHHHHhccc
Q 028410 165 RFVGEMERTVKI 176 (209)
Q Consensus 165 ~~l~~~~r~Lkp 176 (209)
++..-+.++-|.
T Consensus 89 el~~~~~~la~~ 100 (134)
T PRK04148 89 DLQPFILELAKK 100 (134)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 189
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.5e-06 Score=65.09 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcc--c
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTA--H 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~--~ 156 (209)
....-++|||||+|..+..+++. +.....++|+|+.+.+ .++.|...- +.+++.|+++.+ +
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCc
Confidence 34789999999999999999983 5567889999998543 556665542 234888888876 1
Q ss_pred ch--------------hhh--C----HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LA--------------EAL--F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~--------------~~~--~----~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+. +.. + ..+++..+-..|.|.|+++++.-. .+..+++.+.++..++
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--~N~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--ANKPKEILKILEKKGY 186 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--hcCHHHHHHHHhhccc
Confidence 11 000 1 145666677888899999988776 4467788888887766
No 190
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=1.8e-06 Score=70.25 Aligned_cols=90 Identities=29% Similarity=0.354 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC---------cEEEcCCCCCCCCCCceeeEEcccchhhhC---
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTAHLAEALF--- 162 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--- 162 (209)
..+..++|+|||.|-... ..+..-++|.|++...+ ....+|+.++|+++.+||.+++..+.||+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 568999999999987653 22334678888887644 377889999999999999999988888882
Q ss_pred -HHHHHHHHHHhcccCcEEEEEEecC
Q 028410 163 -PSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 163 -~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+++++.|++||||...+.+...
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehh
Confidence 3889999999999999988877654
No 191
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=3.9e-06 Score=66.39 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=74.1
Q ss_pred CC-CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC---------------cEEEcCCCCCCCCCCc-eeeEEccc
Q 028410 95 FN-HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEA-FDVAFTAH 156 (209)
Q Consensus 95 ~~-~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~-fD~i~~~~ 156 (209)
.. +.+++|||+|.|.-+..+|- .+..+++-+|...+.+ .++++.+++..- +.. ||+|.+..
T Consensus 65 ~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRA 143 (215)
T COG0357 65 DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRA 143 (215)
T ss_pred cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeeh
Confidence 44 69999999999999999884 5666899999988733 366777777652 123 99999977
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
+.. ...+..-+...+|+||.++..-.....++..+......
T Consensus 144 va~---L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~ 184 (215)
T COG0357 144 VAS---LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAIL 184 (215)
T ss_pred ccc---hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHH
Confidence 664 66777778899999998765555544455555544433
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.29 E-value=1.7e-06 Score=74.36 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCCCC-CCCceeeEEcccchh
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNLPF-FDEAFDVAFTAHLAE 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~-~~~~fD~i~~~~~~~ 159 (209)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++ +..+|+.+... ..++||+|+.+---.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999876 59999999998443 67777755321 124699998852211
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHH
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l 198 (209)
.. ..+++..+. .++|++.+++.+.. ....+.+..+
T Consensus 312 G~-~~~~l~~l~-~~~p~~ivyvsc~p--~TlaRDl~~L 346 (374)
T TIGR02085 312 GI-GKELCDYLS-QMAPKFILYSSCNA--QTMAKDIAEL 346 (374)
T ss_pred CC-cHHHHHHHH-hcCCCeEEEEEeCH--HHHHHHHHHh
Confidence 11 234444444 47999876666543 3344445444
No 193
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.28 E-value=2.5e-06 Score=69.21 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCC----------------CcEEEcCCCCC-C-C-----CCCce
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSL----------------PLVSRADPHNL-P-F-----FDEAF 149 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~----------------~~~~~~d~~~~-~-~-----~~~~f 149 (209)
.+..+|||+|+++|+.+.+++. . +.++++++|.+++. ++++.+|+.+. + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 5678999999999999999987 3 35799999999873 33667776552 1 1 13689
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil 182 (209)
|+||..+- .-.....+..+.+.|+|||.+++
T Consensus 158 D~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVDAD--KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEecCC--HHHhHHHHHHHHHhcCCCeEEEE
Confidence 99998532 11345667778899999999654
No 194
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4.3e-06 Score=64.91 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=78.9
Q ss_pred hHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-------------EEEcC
Q 028410 73 SWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-------------VSRAD 138 (209)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-------------~~~~d 138 (209)
.|....+.+...+-.-...-.++++.+||-+|+.+|...-+++. .|.+.++++++|+.+.. -+.+|
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D 132 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED 132 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc
Confidence 35555554444443333334679999999999999999999999 47789999999998442 34555
Q ss_pred CCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 139 PHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 139 ~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+.... .--+..|+|+.. +...-+..-+..++...||+||.++++....
T Consensus 133 A~~P~~Y~~~Ve~VDviy~D-VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKAr 183 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQD-VAQPNQAEILADNAEFFLKKGGYVVIAIKAR 183 (231)
T ss_pred cCCcHHhhhhcccccEEEEe-cCCchHHHHHHHHHHHhcccCCeEEEEEEee
Confidence 54421 223668999872 2222233556688899999999988887654
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.26 E-value=2.2e-06 Score=66.86 Aligned_cols=91 Identities=14% Similarity=-0.080 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCC-C-C-CC-CceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNL-P-F-FD-EAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~-~-~-~~-~~fD~i~~ 154 (209)
-++.++||++||+|.++.+++..|...|+++|.++.++ +++.+|+.+. . + .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 35789999999999999999998877999999998733 2566776442 1 1 12 24788888
Q ss_pred ccchhhhCHHHHHHHHH--HhcccCcEEEEEEe
Q 028410 155 AHLAEALFPSRFVGEME--RTVKIGGVCMVLME 185 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~--r~LkpgG~lil~~~ 185 (209)
.--.......+++..+. ..|++||.+++-..
T Consensus 128 DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 52222122344444443 46888887555443
No 196
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.26 E-value=2.5e-05 Score=65.67 Aligned_cols=89 Identities=17% Similarity=0.086 Sum_probs=66.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC--------CcEEEcCCCCCCCCCCceeeEEcccchhhhCHH
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------PLVSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~--------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
.+.++.++||+||++|.++..+.+.|. +|++||..+-. +....+|.....-+.+.+|+++|.-+.. |.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---PA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---HH
Confidence 458899999999999999999999986 99999976542 2355566555432367899999965544 88
Q ss_pred HHHHHHHHhcccC--cEEEEEEe
Q 028410 165 RFVGEMERTVKIG--GVCMVLME 185 (209)
Q Consensus 165 ~~l~~~~r~Lkpg--G~lil~~~ 185 (209)
++.+-|.+.|..| ...++...
T Consensus 284 rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 284 RVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred HHHHHHHHHHhcCcccEEEEEEE
Confidence 8888888888776 34444443
No 197
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.24 E-value=6.2e-06 Score=71.70 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=75.1
Q ss_pred CCCC-eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccchh
Q 028410 95 FNHS-KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~-~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
.+.. ++|-+|||.-.+...+-+.|+..|+.+|+|+..++ +...|+..+.|++++||+++.-...+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 5555 99999999999999999989999999999987442 78899999999999999999854333
Q ss_pred hh--C---------HHHHHHHHHHhcccCcEEEEEEe
Q 028410 160 AL--F---------PSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 160 ~~--~---------~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
++ + ....+.+++|+++|||+.+.++.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 33 1 24567999999999999877766
No 198
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=1.3e-05 Score=61.57 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=75.8
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHh--cCCceEEEecCCCC----CCcEEEc-CCCCC--------CCCCCceeeEEcc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDS----LPLVSRA-DPHNL--------PFFDEAFDVAFTA 155 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~--~~~~~v~~vD~s~~----~~~~~~~-d~~~~--------~~~~~~fD~i~~~ 155 (209)
.+.++++.+|||+||.+|.+++...+ .+.+.|.|||+..- ...++.+ |+.+. .+|+...|+|++.
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 45679999999999999999998877 37889999998754 2235555 66663 2578999999995
Q ss_pred cc--------hhhh---CH-HHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 156 HL--------AEAL---FP-SRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 156 ~~--------~~~~---~~-~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
.. ..|. +. ..++.-....++|+|.++.=+... .+...+.+.+.|..-+.
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~ 206 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK 206 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe
Confidence 11 1111 11 334444556678999977666553 23344455556654443
No 199
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.17 E-value=1.6e-06 Score=68.36 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=53.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC------------------------cEEEcCCCCCCCCC
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP------------------------LVSRADPHNLPFFD 146 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~------------------------~~~~~d~~~~~~~~ 146 (209)
..++++...+|+|||.|....+.+. .+..+.+|||+.+... ++..+|+.+.++.+
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 3578999999999999999888876 5777899999998722 25566666543211
Q ss_pred ---CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEE
Q 028410 147 ---EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 147 ---~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~li 181 (209)
...|+|++++....-+....+.++...||+|.+++
T Consensus 118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred hhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 35799999875432234555677778888887754
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.16 E-value=1.2e-05 Score=66.33 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=65.6
Q ss_pred CeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCCC-CCCCCceeeEEccc
Q 028410 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHNL-PFFDEAFDVAFTAH 156 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~~-~~~~~~fD~i~~~~ 156 (209)
.+||-+|-|.|..++++.+. +..+++.+|+++..++ ++.+|..+. .-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999995 5789999999998554 233333221 11234899999963
Q ss_pred chh-----hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~-----~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
... .++...+++.+++.|+++|.++.-..+
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 332 124489999999999999997666333
No 201
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.15 E-value=2.7e-06 Score=70.77 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=49.7
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCCCCCCCCceeeEEc
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.....++.+|||||||+|.++..+++.+ .+|+++|+++.+ ++++.+|+.+.++ ..||.|++
T Consensus 31 ~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~Vva 107 (294)
T PTZ00338 31 KAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVA 107 (294)
T ss_pred hcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEe
Confidence 3356788999999999999999999875 489999999763 3477888877654 36899887
Q ss_pred c
Q 028410 155 A 155 (209)
Q Consensus 155 ~ 155 (209)
+
T Consensus 108 N 108 (294)
T PTZ00338 108 N 108 (294)
T ss_pred c
Confidence 5
No 202
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.15 E-value=7.5e-06 Score=68.86 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCcEE----------------------EcCCCCC-CCCCCce
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPLVS----------------------RADPHNL-PFFDEAF 149 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~~~----------------------~~d~~~~-~~~~~~f 149 (209)
++.-.++|-+|.|.|...+++.++| ..+|+-+|++|+|+++. ..|+.++ .-..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3677899999999999999999986 88999999999988732 2222221 1124689
Q ss_pred eeEEcc------cchhhhCHHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhccccc
Q 028410 150 DVAFTA------HLAEALFPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSSF 204 (209)
Q Consensus 150 D~i~~~------~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~~ 204 (209)
|+|+.. .....+...++...+.|.|+++|.+++...++ ....+..+.+-+++.|+
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~ 429 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY 429 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc
Confidence 999874 12222345889999999999999977665553 22344445555555543
No 203
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.15 E-value=4.7e-06 Score=67.72 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------------------------------- 133 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------------------------------- 133 (209)
..+.++||||||+-.....-+..-..+|+..|..+...+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 357799999999865543333323568999999876221
Q ss_pred ---EEEcCCCCCC-CCC-----CceeeEEcccchhhh--CH---HHHHHHHHHhcccCcEEEEEEecCC-----------
Q 028410 134 ---VSRADPHNLP-FFD-----EAFDVAFTAHLAEAL--FP---SRFVGEMERTVKIGGVCMVLMEECA----------- 188 (209)
Q Consensus 134 ---~~~~d~~~~~-~~~-----~~fD~i~~~~~~~~~--~~---~~~l~~~~r~LkpgG~lil~~~~~~----------- 188 (209)
++..|+.+.+ +.. .+||+|++....+.. +. ..+++++.++|||||.+++...-..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 6788887743 332 359999998766655 43 7788999999999999988754321
Q ss_pred --cccHHHHHHHhccccc
Q 028410 189 --GREIKQIVELFRTSSF 204 (209)
Q Consensus 189 --~~~~~~~~~l~~~~~~ 204 (209)
.-....+.+.+..+|+
T Consensus 215 ~l~l~ee~v~~al~~aG~ 232 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGF 232 (256)
T ss_dssp ---B-HHHHHHHHHHTTE
T ss_pred cccCCHHHHHHHHHHcCC
Confidence 1245556777777776
No 204
>PRK00536 speE spermidine synthase; Provisional
Probab=98.13 E-value=4.2e-06 Score=68.32 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEE-------EcCCCC--------C-CCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVS-------RADPHN--------L-PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~-------~~d~~~--------~-~~~~~~fD~i~~~~~~ 158 (209)
.++.+||=+|.|.|..++++.+.+. +|+-+|++++.+++. .+...+ . .-..++||+|+...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs-- 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ-- 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC--
Confidence 6789999999999999999999864 999999999866411 111111 0 11237899999853
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.++..+++.++|.|+|||.++....++
T Consensus 148 --~~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 148 --EPDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred --CCChHHHHHHHHhcCCCcEEEECCCCc
Confidence 246888999999999999966654443
No 205
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.12 E-value=4.1e-06 Score=69.22 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------------EEEcCCCCC-C--CCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------VSRADPHNL-P--FFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~-~--~~~~~fD~i~~ 154 (209)
..+.+|||+-|=||.++.+.+.-|..+|+.||.|..+++ ++..|+.+. . -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 568899999999999999988878779999999987443 666666541 1 12468999999
Q ss_pred c------cchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 155 A------HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 155 ~------~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
. .-.... +..+++..+.++|+|||.++.+..+. ..+.+.+.+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~-~i~~~~l~~~~ 252 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH-HISPDFLLEAV 252 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T-TS-HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc-ccCHHHHHHHH
Confidence 5 111111 45778899999999999987776654 33444444433
No 206
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.11 E-value=4e-06 Score=72.24 Aligned_cols=87 Identities=24% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEcccchhh
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~~~~~ 160 (209)
+.+|||++||+|..+..++. .+..+|+++|+++.+++ +..+|+..+-...+.||+|+..-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 56899999999999999987 45569999999987443 556666543211467999988532
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..+..++....+.+++||.+++....
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 23577888878889999998888544
No 207
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.10 E-value=2.9e-05 Score=56.14 Aligned_cols=88 Identities=28% Similarity=0.378 Sum_probs=63.7
Q ss_pred EEEEcCCCChhHHHHHhc-CC-ceEEEecCCCCC---------------CcEEEcCCCC--CCCCC-CceeeEEcccchh
Q 028410 100 VLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDSL---------------PLVSRADPHN--LPFFD-EAFDVAFTAHLAE 159 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~~-~~-~~v~~vD~s~~~---------------~~~~~~d~~~--~~~~~-~~fD~i~~~~~~~ 159 (209)
++|+|||+|... .+... +. ..++++|+++.+ +.+..+|... .++.+ ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 34443 21 388899998752 2456667665 67766 4899993333333
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
+..+...+.++.+.++|+|.+++......
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33578999999999999999888876643
No 208
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.10 E-value=1.5e-05 Score=67.03 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc-----------------EE-EcCCCCCC----CCCCceeeE
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL-----------------VS-RADPHNLP----FFDEAFDVA 152 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~-----------------~~-~~d~~~~~----~~~~~fD~i 152 (209)
++.++||||||+|.....++. ....+++|+|+++.+++ +. +.|..++. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 578999999999988777766 33359999999987443 21 22222211 246789999
Q ss_pred Ecc
Q 028410 153 FTA 155 (209)
Q Consensus 153 ~~~ 155 (209)
+|+
T Consensus 194 vcN 196 (321)
T PRK11727 194 LCN 196 (321)
T ss_pred EeC
Confidence 997
No 209
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.10 E-value=6.6e-05 Score=61.61 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=74.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cC--CceEEEecCCCCCC----------------cEEEcCCCCCC-C--CCCcee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IG--VADVTGVELMDSLP----------------LVSRADPHNLP-F--FDEAFD 150 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~--~~~v~~vD~s~~~~----------------~~~~~d~~~~~-~--~~~~fD 150 (209)
.-..+.+||||+||.|+....... .+ ..+|.-.|.|+..+ .|.++|+.+.. + -+-..+
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 336789999999999988877665 33 35899999999844 37888887732 1 234578
Q ss_pred eEEcccchhhh-CH---HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 151 VAFTAHLAEAL-FP---SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 151 ~i~~~~~~~~~-~~---~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
+++.+.+++.+ |- ...+..+.+.+.|||+++.. +.+-..+...+...+
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT-gQPwHPQle~IAr~L 263 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT-GQPWHPQLEMIARVL 263 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc-CCCCCcchHHHHHHH
Confidence 99998888877 42 45678899999999997544 333333443333333
No 210
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.09 E-value=4.9e-06 Score=67.56 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCc-------------------EEEcCCCCC-CCCCC-ceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL-------------------VSRADPHNL-PFFDE-AFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~-------------------~~~~d~~~~-~~~~~-~fD~i 152 (209)
.++.+||-+|-|.|..+.++.+.+ ..+++.+|+++..++ ++.+|.... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 578999999999999999999864 679999999998543 445554331 11233 89999
Q ss_pred Ecccch-----hhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+..-.. ..+...++++.+.+.|+|||.+++-....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 985222 12345899999999999999988776544
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.8e-06 Score=63.56 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
-++.+++|+|||.|-.....+..+...|.|+|+.+++++ +++.|+.++.+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 468999999999999998777776779999999998553 7888998888888999999987
No 212
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=9.7e-06 Score=65.63 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=87.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCC----------------CCcEEEcCCCCCCCC--CCceeeE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDS----------------LPLVSRADPHNLPFF--DEAFDVA 152 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~--~~~fD~i 152 (209)
..+|+.+|++-|.|+|..+.++++ . +.+.++..|+-+. .+.+...|+....|. +..+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 679999999999999999999998 3 6789999999765 334778888886654 5789999
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccccc
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFTEA 207 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (209)
+.. + ..|..++-.+.++||.+|.- +|..++.-++.+...+++..++|+.+
T Consensus 182 FLD-l---PaPw~AiPha~~~lk~~g~r-~csFSPCIEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 182 FLD-L---PAPWEAIPHAAKILKDEGGR-LCSFSPCIEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred EEc-C---CChhhhhhhhHHHhhhcCce-EEeccHHHHHHHHHHHHHHhCCCceE
Confidence 872 1 24788888899999988753 45445557788889999999998654
No 213
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=2.5e-05 Score=65.86 Aligned_cols=105 Identities=15% Similarity=0.049 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
.+|..|+|+=||-|.++..+|..+..+|+++|+||.++ ..+++|.......-+.+|-|++.+..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 67999999999999999999998776699999999843 37789988877655899999997654
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcc----cHHHHHHHhccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGR----EIKQIVELFRTS 202 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~----~~~~~~~l~~~~ 202 (209)
. ...++....+.+|+||.+-......... -...+.+..++.
T Consensus 267 ~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 267 S---AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred c---chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 3 4567777888899999976666555443 345566655554
No 214
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=3.7e-05 Score=65.66 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=76.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcC---CceEEEecCCCCCC---------------cEEEcCCCCCC---CCCCceee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIG---VADVTGVELMDSLP---------------LVSRADPHNLP---FFDEAFDV 151 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~---~~~v~~vD~s~~~~---------------~~~~~d~~~~~---~~~~~fD~ 151 (209)
..+++.+|||+++++|.-+.++++.. ...|+++|.++..+ .+...|....+ ...++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 45889999999999999999999842 23569999999722 25566665543 22236999
Q ss_pred EEcc------cch----------------hhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH-Hhcc
Q 028410 152 AFTA------HLA----------------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRT 201 (209)
Q Consensus 152 i~~~------~~~----------------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~-l~~~ 201 (209)
|+.. .+. ... -..+++....+.|||||.++.++.+....+.....+ ++.+
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 9974 111 111 136788999999999999999988876555555443 4433
No 215
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.00012 Score=58.37 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=70.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------EEEcCCCCCCC--CCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLPF--FDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~-----------~~~~d~~~~~~--~~~~fD~i~~~~~~~ 159 (209)
..-++..+||+|+.||.++..+.+.|...|+++|..-..+. ....|+..+.- -.+..|+++|.-.+
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF- 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF- 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeeh-
Confidence 34789999999999999999999999899999999886553 33444444331 12367899884322
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+....++..+...++|+|.++..+..
T Consensus 155 -ISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 155 -ISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred -hhHHHHHHHHHHhcCCCceEEEEecc
Confidence 24688899999999999998888754
No 216
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.99 E-value=7.5e-06 Score=64.32 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..++..|+|+.||-|.++..+++. ....|+++|++|..+ ....+|..+..- .+.||-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 488999999999999999999983 345899999998833 367888887754 88999999864
Q ss_pred chhhhCHHHHHHHHHHhcccCcEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~l 180 (209)
... ...++..+.+.+|+||.+
T Consensus 178 p~~---~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 PES---SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TSS---GGGGHHHHHHHEEEEEEE
T ss_pred hHH---HHHHHHHHHHHhcCCcEE
Confidence 333 235677889999999974
No 217
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.98 E-value=3.5e-06 Score=65.40 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCC-CC---CCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHN-LP---FFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~-~~---~~~~~fD~i~~ 154 (209)
-++.++||+-||||..+.+...+|..+|+.||.++.... ++..|... ++ -...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 478999999999999999999899889999999987332 45566433 21 24689999999
Q ss_pred ccchhhhC-HHHHHHHHH--HhcccCcEEEEEEecC
Q 028410 155 AHLAEALF-PSRFVGEME--RTVKIGGVCMVLMEEC 187 (209)
Q Consensus 155 ~~~~~~~~-~~~~l~~~~--r~LkpgG~lil~~~~~ 187 (209)
.--...-. ..+++..+. ..|+++|.+++-....
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 63222112 366777776 7899999877766554
No 218
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.95 E-value=1.8e-05 Score=66.23 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=68.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh--------cCCceEEEecCCCCCCc-----------------EEEcCCCCCCCC--
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS--------IGVADVTGVELMDSLPL-----------------VSRADPHNLPFF-- 145 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~--------~~~~~v~~vD~s~~~~~-----------------~~~~d~~~~~~~-- 145 (209)
...++.+|+|-+||+|.+..++.+ ....+++|+|+++.+.. +..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 446778999999999999888765 13469999999987331 456665544332
Q ss_pred CCceeeEEccc---ch----hhh---------------CHHHHHHHHHHhcccCcEEEEEEecC---CcccHHHHHHHhc
Q 028410 146 DEAFDVAFTAH---LA----EAL---------------FPSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIVELFR 200 (209)
Q Consensus 146 ~~~fD~i~~~~---~~----~~~---------------~~~~~l~~~~r~LkpgG~lil~~~~~---~~~~~~~~~~l~~ 200 (209)
...||+|+++- .. ... ....++..+.+.||+||++.+++... .......+++.+-
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHH
Confidence 47899999971 11 000 01358899999999999998888763 2223455665443
No 219
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.95 E-value=5.2e-05 Score=62.55 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=69.8
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCCcE---EEcC------------CCCCCCC
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLPLV---SRAD------------PHNLPFF 145 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~~~---~~~d------------~~~~~~~ 145 (209)
.++.++.....--.+.+|||+|||+|....+..+ . ...+++++|.|+.|+++ +..+ ......+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 3344443333334677999999999988777766 3 35689999999997751 0000 1100011
Q ss_pred CCceeeEEcccchhhh-C--HHHHHHHHHHhcccCcEEEEEEecC--CcccHHHHHHHhcccc
Q 028410 146 DEAFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSS 203 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~-~--~~~~l~~~~r~LkpgG~lil~~~~~--~~~~~~~~~~l~~~~~ 203 (209)
-...|+|+++|++..+ + ...+++.+.+.+.+ .++++.... +........+.+...+
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~ 160 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKG 160 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCC
Confidence 2234999999988888 3 35555666665555 655554443 2334444555554433
No 220
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.93 E-value=3.9e-05 Score=67.11 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCC-CCCCc---------EEEcCCCC
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELM-DSLPL---------VSRADPHN 141 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s-~~~~~---------~~~~d~~~ 141 (209)
+.|......+..++... .....-..|+|+.+|.|.++.+|.+.+..-...+=.+ +.-+. ..+--.+.
T Consensus 344 ~~Wk~~V~~Y~~l~~~~---i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~ 420 (506)
T PF03141_consen 344 KHWKKRVSHYKKLLGLA---IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA 420 (506)
T ss_pred HHHHHHHHHHHHhhccc---ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhc
Confidence 34555555544443311 1224457899999999999999998764322222111 11111 11222334
Q ss_pred CCCCCCceeeEEcccchhhh----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 142 LPFFDEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 142 ~~~~~~~fD~i~~~~~~~~~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
++.=+.+||++.+++++... +...++-||-|+|||||.+++=-. .+-...+.++++
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~i~~ 480 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKKIAK 480 (506)
T ss_pred cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHHHHH
Confidence 56557999999998776544 568999999999999999655332 233444444444
No 221
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.89 E-value=4e-05 Score=62.16 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=58.6
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC----------------cEEEcCCCCCCCC
Q 028410 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------------LVSRADPHNLPFF 145 (209)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~ 145 (209)
...+..+...+.++++..|||+|.|||..+..+.+.|. +|+++|+++.|+ .++.+|+...++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 44566667777889999999999999999999999875 999999999855 378888877654
Q ss_pred CCceeeEEcc
Q 028410 146 DEAFDVAFTA 155 (209)
Q Consensus 146 ~~~fD~i~~~ 155 (209)
-.||.++++
T Consensus 122 -P~fd~cVsN 130 (315)
T KOG0820|consen 122 -PRFDGCVSN 130 (315)
T ss_pred -cccceeecc
Confidence 358998885
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=0.00014 Score=57.68 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCC----------------cEEEcCCCCC------CCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLP----------------LVSRADPHNL------PFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~----------------~~~~~d~~~~------~~~~~~fD 150 (209)
.+..+.||+|.=||+.+..+|. . ..++|+++|+++... .++++++.+. ..+.++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 5788999999999999999887 3 357999999998733 3666665541 23578999
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
++|..+-- -+-...+.++.+.+|+||.+++-
T Consensus 152 faFvDadK--~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVDADK--DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEccch--HHHHHHHHHHHhhcccccEEEEe
Confidence 99984210 02347789999999999997654
No 223
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=4.2e-05 Score=62.19 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=56.9
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCCC-cee
Q 028410 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDE-AFD 150 (209)
Q Consensus 85 ~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~-~fD 150 (209)
+...++.....++..|||||+|.|.++..|++.+. .|+++|+++.+ ++++.+|+...++++. .++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 44455555778899999999999999999999865 89999999873 3488999999888654 678
Q ss_pred eEEcc
Q 028410 151 VAFTA 155 (209)
Q Consensus 151 ~i~~~ 155 (209)
.|+++
T Consensus 98 ~vVaN 102 (259)
T COG0030 98 KVVAN 102 (259)
T ss_pred EEEEc
Confidence 88885
No 224
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.85 E-value=3e-05 Score=66.25 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=61.0
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCCC--------C---C-----C
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNLP--------F---F-----D 146 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~--------~---~-----~ 146 (209)
.++||++||+|.++..+++.. .+|+|+|+++.+++ ++.+|+.++- + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999998864 59999999998553 6667765521 1 0 1
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..||+|+..-- ...-..++++.+. +|++.+++.+.. ....+.+..+...+++
T Consensus 278 ~~~d~v~lDPP-R~G~~~~~l~~l~---~~~~ivYvsC~p--~tlaRDl~~L~~~Y~l 329 (353)
T TIGR02143 278 YNCSTIFVDPP-RAGLDPDTCKLVQ---AYERILYISCNP--ETLKANLEQLSETHRV 329 (353)
T ss_pred CCCCEEEECCC-CCCCcHHHHHHHH---cCCcEEEEEcCH--HHHHHHHHHHhcCcEE
Confidence 23798887421 1111234444443 377776655544 3344445544433443
No 225
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=5.2e-05 Score=58.70 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCCCCCCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~i~~~~~~ 158 (209)
..-.+.+|||+|+|+|..+...+..|...|+..|+.+.... +...|. -..+..||+++...+.
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~LagDlf 152 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAGDLF 152 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEeecee
Confidence 34568999999999999999998888788888888765322 222222 2367899999998876
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecCCcc
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGR 190 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~ 190 (209)
... .-.+++. +.+.|+..|..+++......+
T Consensus 153 y~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 153 YNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred cCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 655 4455556 888888888877755444433
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.82 E-value=1.4e-05 Score=68.60 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCCC-CCCCceeeEEcccch
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLP-FFDEAFDVAFTAHLA 158 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~~-~~~~~fD~i~~~~~~ 158 (209)
+.+|||..||+|..+...+.. |..+|+++|+++..++ +..+|+.++- .....||+|...-.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf- 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF- 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC-
Confidence 468999999999999999885 6679999999998543 4445544421 12357999988542
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
-.+..++..+.+.+++||.+.+...
T Consensus 124 --Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 --GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2467899999999999999888743
No 227
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=2.3e-05 Score=58.37 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=42.0
Q ss_pred CCCCCCCCceeeEEcccchhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 140 HNLPFFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 140 ~~~~~~~~~fD~i~~~~~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...+|.+++.|+|.+.|+.+|+ ....++++++|.|||||++-+.+...
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 3467999999999999999999 44788999999999999998888764
No 228
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.73 E-value=6.2e-05 Score=64.54 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCC-C-CC--------------
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNL-P-FF-------------- 145 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~-~-~~-------------- 145 (209)
+.++||++||+|.++..+++. ..+|+|+|.++.+++ ++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 357999999999999988886 359999999998553 667776552 1 10
Q ss_pred CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
..+||+|+..-= ..--..++++.+.+ |++.+++.+.. ....+.+..+.
T Consensus 286 ~~~~D~v~lDPP-R~G~~~~~l~~l~~---~~~ivyvSC~p--~tlarDl~~L~ 333 (362)
T PRK05031 286 SYNFSTIFVDPP-RAGLDDETLKLVQA---YERILYISCNP--ETLCENLETLS 333 (362)
T ss_pred CCCCCEEEECCC-CCCCcHHHHHHHHc---cCCEEEEEeCH--HHHHHHHHHHc
Confidence 225899988421 11112444444443 67766555554 33344444443
No 229
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.70 E-value=0.0004 Score=51.44 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc-ccCCCCCeEEEEcCCCChhHHHHHh-----cCCceEEEecCCCCCC
Q 028410 81 YAHFFKHLQGK-SLLFNHSKVLCVSAGAGHEVMAFNS-----IGVADVTGVELMDSLP 132 (209)
Q Consensus 81 ~~~~~~~l~~~-~~~~~~~~iLDiGcG~G~~~~~la~-----~~~~~v~~vD~s~~~~ 132 (209)
...++..+... ....+...|+|+|||.|+++..++. ....+|+++|.++..+
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~ 66 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV 66 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH
Confidence 34444443322 3447889999999999999999998 4445999999998854
No 230
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.70 E-value=0.00024 Score=56.75 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=77.9
Q ss_pred hhHhhHhHHHHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCC-------------CcEEE
Q 028410 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-------------PLVSR 136 (209)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~-------------~~~~~ 136 (209)
+-|......+..-+---++..+++++.+||-+|+++|+..-++++. +.+-|++++.|... +--+.
T Consensus 132 RVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIi 211 (317)
T KOG1596|consen 132 RVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPII 211 (317)
T ss_pred EEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeee
Confidence 3365555555544444445567899999999999999999999994 56789999999761 11334
Q ss_pred cCCCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 137 ADPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 137 ~d~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.|+.... ..-.-.|+||+. +.+.-...-+.-+..-.||+||.+++.....
T Consensus 212 EDArhP~KYRmlVgmVDvIFaD-vaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 212 EDARHPAKYRMLVGMVDVIFAD-VAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred ccCCCchheeeeeeeEEEEecc-CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 4544321 223578888873 3322223445567888999999999987664
No 231
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.66 E-value=2.6e-05 Score=64.57 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=73.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCc---------------EEEcCCCCC-C-CCCCceeeEE
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNL-P-FFDEAFDVAF 153 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~---------------~~~~d~~~~-~-~~~~~fD~i~ 153 (209)
...++..|||+++++|.-+.++++. +.+.+++.|+++..+. ....|.... + .....||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 4478899999999999999999983 4689999999988332 333444443 1 2334699999
Q ss_pred cc----c--chh-------h--------h--CHHHHHHHHHHhc----ccCcEEEEEEecCCcccHHHHHH
Q 028410 154 TA----H--LAE-------A--------L--FPSRFVGEMERTV----KIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 154 ~~----~--~~~-------~--------~--~~~~~l~~~~r~L----kpgG~lil~~~~~~~~~~~~~~~ 197 (209)
.. . +.. . + -..+++....+.+ ||||+++.++.+....+.....+
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~ 232 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVE 232 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHH
Confidence 73 1 000 0 0 1267889999999 99999999988765444444444
No 232
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.61 E-value=0.00026 Score=65.79 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=64.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc------C-------------------------------------CceEEEecCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI------G-------------------------------------VADVTGVELMDSL 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~------~-------------------------------------~~~v~~vD~s~~~ 131 (209)
+++..++|-+||+|.+..+.+.. | ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56899999999999999887641 0 1269999999884
Q ss_pred C----------------cEEEcCCCCCCCC--CCceeeEEccc--chhh---hCHHHHHHHHHHhc---ccCcEEEEEEe
Q 028410 132 P----------------LVSRADPHNLPFF--DEAFDVAFTAH--LAEA---LFPSRFVGEMERTV---KIGGVCMVLME 185 (209)
Q Consensus 132 ~----------------~~~~~d~~~~~~~--~~~fD~i~~~~--~~~~---~~~~~~l~~~~r~L---kpgG~lil~~~ 185 (209)
+ .+.++|+.+++.+ .++||+|+++- .... .+...+..++.+.+ .+|+.+++.+.
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4 3778899887654 35799999982 1111 12344444444444 48999888877
Q ss_pred cC
Q 028410 186 EC 187 (209)
Q Consensus 186 ~~ 187 (209)
..
T Consensus 349 ~~ 350 (702)
T PRK11783 349 SP 350 (702)
T ss_pred CH
Confidence 53
No 233
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.61 E-value=0.00011 Score=56.56 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC---------------CCcEEEcCCCCCCCCCCceeeEEcccchhhh
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
...+.|+|+|+|.++...++. ..+|++++.+|. .++++.+|+.+..| +..|+|+|--+...+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 378999999999999988887 459999999987 33488999999888 678999996554444
Q ss_pred ---CHHHHHHHHHHhcccCcEEE
Q 028410 162 ---FPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 162 ---~~~~~l~~~~r~LkpgG~li 181 (209)
.....+..+.+.||-++.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 23667778888888888753
No 234
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.59 E-value=0.00047 Score=57.95 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-----------CcEEEcCCCCCCCCCCceeeEEcccchhhh--
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-- 161 (209)
+.-...+|+|.|.|..+..+... +-.|-++++.... ++.+-+|..+- .|. -|+|++-++.++.
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCCh
Confidence 44689999999999999998873 3357777776541 34455555543 333 3599999988888
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 162 -FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 162 -~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+-.++|+++++.|+|||.+++...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 348899999999999999998876
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00039 Score=54.74 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------EEEcCCCC--CCCCCCceeeEEcccch
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHN--LPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------~~~~d~~~--~~~~~~~fD~i~~~~~~ 158 (209)
.++.+||+||=|-|.....+.+.+..+=+-++..+.... .+.+-.++ ..++|+.||-|+-....
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 789999999999999988888754445566787776332 33444444 23678899999886554
Q ss_pred hhh-CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 159 ~~~-~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++- +...+.+.+.|+|||+|++-.+..-+
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 444 78889999999999999976665444
No 236
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00018 Score=55.59 Aligned_cols=92 Identities=24% Similarity=0.144 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCC--CCCC-CceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNL--PFFD-EAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~--~~~~-~~fD~i~~~ 155 (209)
-++.++||+-+|||..+.+...+|...++.||.+..... ++..|+... .... +.||+|+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 578999999999999999999998889999999987442 555665532 1222 259999996
Q ss_pred cchh-hh-CHHHHHHH--HHHhcccCcEEEEEEec
Q 028410 156 HLAE-AL-FPSRFVGE--MERTVKIGGVCMVLMEE 186 (209)
Q Consensus 156 ~~~~-~~-~~~~~l~~--~~r~LkpgG~lil~~~~ 186 (209)
--+. .+ +....+.. -...|+|||.+++-...
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 3222 12 33444444 45779999987665543
No 237
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.53 E-value=0.00048 Score=59.14 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh--cCCceEEEecCCCCCCc---------------EEEcCCCCCC---CCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDSLPL---------------VSRADPHNLP---FFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~--~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~---~~~~~fD~i~~ 154 (209)
+++.+|||+++-+|.-+.++|. .+.+.|++.|.+...+. +...|...+| ++. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 8899999999999999999888 35689999998887443 3444444443 334 8999986
Q ss_pred c----c------------------chhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH-Hhccc
Q 028410 155 A----H------------------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRTS 202 (209)
Q Consensus 155 ~----~------------------~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~-l~~~~ 202 (209)
. . +..+. -..+++......+|+||+++.++.+..-.+.....+ +++++
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 3 1 11111 137788889999999999999988876555555444 55555
No 238
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.49 E-value=0.00049 Score=57.88 Aligned_cols=93 Identities=9% Similarity=0.019 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c----CCceEEEecCCCCCCc-----------------EEEcCCCC----CCC--CC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I----GVADVTGVELMDSLPL-----------------VSRADPHN----LPF--FD 146 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~----~~~~v~~vD~s~~~~~-----------------~~~~d~~~----~~~--~~ 146 (209)
.++..++|+|||+|.-+..|.+ . ....++++|+|...++ -+.+|..+ ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 6778999999999998776654 1 1247999999986442 24566544 211 12
Q ss_pred CceeeEEcc-cchhhhCH---HHHHHHHHH-hcccCcEEEEEEecC
Q 028410 147 EAFDVAFTA-HLAEALFP---SRFVGEMER-TVKIGGVCMVLMEEC 187 (209)
Q Consensus 147 ~~fD~i~~~-~~~~~~~~---~~~l~~~~r-~LkpgG~lil~~~~~ 187 (209)
....+++.- .....+++ ..+++++++ .|+|||.+++.+...
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 335566553 23333333 678899999 999999988877553
No 239
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00046 Score=53.49 Aligned_cols=91 Identities=18% Similarity=0.082 Sum_probs=61.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCC---------------------cEEEcCCCCCCCCCCce
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP---------------------LVSRADPHNLPFFDEAF 149 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~---------------------~~~~~d~~~~~~~~~~f 149 (209)
.++++++|+|+=.|.|+++.-++.. +.+.|++.-+.+... +.+-.+...++ +.+..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcc
Confidence 4599999999999999999999984 456888875554411 11222222233 45667
Q ss_pred eeEEcccch--------hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 150 DVAFTAHLA--------EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~--------~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
|+++.+... +.-...++..++++.|||||.+++..
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 777663211 11134889999999999999976664
No 240
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00024 Score=58.81 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=70.1
Q ss_pred cCchhHhhHhHHHHHHHHHHHhccc----CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc-----------
Q 028410 69 WSSKSWKQQVTSYAHFFKHLQGKSL----LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------- 133 (209)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------- 133 (209)
|.+..-+.+......+++.+..+-. .+...+||--|||.|+++..++..|. ++-|-++|--|+-
T Consensus 119 wssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~ 197 (369)
T KOG2798|consen 119 WSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQ 197 (369)
T ss_pred hhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhcc
Confidence 4443333344445555555543222 25578999999999999999999876 6666555543221
Q ss_pred --------------------------------------------EEEcCCCCC-C--CCCCceeeEEcccchhhh-CHHH
Q 028410 134 --------------------------------------------VSRADPHNL-P--FFDEAFDVAFTAHLAEAL-FPSR 165 (209)
Q Consensus 134 --------------------------------------------~~~~d~~~~-~--~~~~~fD~i~~~~~~~~~-~~~~ 165 (209)
...||+.+. + -..++||+|+.+.+.... +..+
T Consensus 198 ~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Nile 277 (369)
T KOG2798|consen 198 ENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILE 277 (369)
T ss_pred CCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHH
Confidence 011222221 1 112479999887655544 7889
Q ss_pred HHHHHHHhcccCcEE
Q 028410 166 FVGEMERTVKIGGVC 180 (209)
Q Consensus 166 ~l~~~~r~LkpgG~l 180 (209)
.+..+..+|||||+-
T Consensus 278 Yi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 278 YIDTIYKILKPGGVW 292 (369)
T ss_pred HHHHHHHhccCCcEE
Confidence 999999999999974
No 241
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=0.00049 Score=54.63 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--C----C----ceEEEecCCCCCC----cEEEcCCCCCC--------CCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--G----V----ADVTGVELMDSLP----LVSRADPHNLP--------FFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~----~----~~v~~vD~s~~~~----~~~~~d~~~~~--------~~~~~fD~i 152 (209)
+.-.+++|+++.+|.+++.+++. . . ..|++||+.+... --+++|++... |..++.|+|
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlV 119 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLV 119 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEE
Confidence 66789999999999999999872 1 1 1399999988743 26789998753 667799999
Q ss_pred Eccc---------chhhhC---HHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAH---------LAEALF---PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~---------~~~~~~---~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|.. +.+++. ....+.-...+|||||.++-=.
T Consensus 120 vcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 120 VCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred EeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 9962 233331 2445566678999999965443
No 242
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=7.7e-05 Score=56.07 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=72.2
Q ss_pred CCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc----EEEcC--------------C--CCCCCCCCceeeEE
Q 028410 96 NHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL----VSRAD--------------P--HNLPFFDEAFDVAF 153 (209)
Q Consensus 96 ~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~----~~~~d--------------~--~~~~~~~~~fD~i~ 153 (209)
.+.+||++|.| +|..+..+|. .+...|...|-+++.+. .+..+ . ........+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 35789999998 4555555555 35568999998887543 11111 0 01112346999999
Q ss_pred cccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+......- ....++.-+++.|+|.|.. +.+......+.+.|.+..+..+|
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~A-l~fsPRRg~sL~kF~de~~~~gf 159 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRA-LLFSPRRGQSLQKFLDEVGTVGF 159 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccce-eEecCcccchHHHHHHHHHhcee
Confidence 97643323 4577889999999999994 44444456788888888777776
No 243
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.29 E-value=0.00058 Score=61.38 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-C--------CceEEEecCCCCCCc---------------EEEcCCCCCC-----CCC
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-G--------VADVTGVELMDSLPL---------------VSRADPHNLP-----FFD 146 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~--------~~~v~~vD~s~~~~~---------------~~~~d~~~~~-----~~~ 146 (209)
.+.+|||.|||+|.+...++.. . ..+++|+|+++..+. +...|..... -..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 5679999999999999988762 1 147899999887442 2222221111 112
Q ss_pred CceeeEEcc--cchhhh----------------------------------C-----------HHHHH-HHHHHhcccCc
Q 028410 147 EAFDVAFTA--HLAEAL----------------------------------F-----------PSRFV-GEMERTVKIGG 178 (209)
Q Consensus 147 ~~fD~i~~~--~~~~~~----------------------------------~-----------~~~~l-~~~~r~LkpgG 178 (209)
+.||+|+++ +.-... + ...++ +...+.|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 579999997 111000 0 01134 45789999999
Q ss_pred EEEEEEecC--CcccHHHHHH-Hhccccc
Q 028410 179 VCMVLMEEC--AGREIKQIVE-LFRTSSF 204 (209)
Q Consensus 179 ~lil~~~~~--~~~~~~~~~~-l~~~~~~ 204 (209)
++.++++.. .......+.+ +++...+
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i 219 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLI 219 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCee
Confidence 999998774 3344555655 4454444
No 244
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.27 E-value=0.00058 Score=55.93 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=58.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC-------------CcEEEcCCCCCCCCC---CceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFD---EAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~---~~fD~i~~~~ 156 (209)
.+.++..|+|+|+|+|.++..+.+.+ .+++++|+++.. ++++.+|+.++...+ +....|+++
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N- 104 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGN- 104 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEE-
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEE-
Confidence 55689999999999999999999987 699999999872 348899999887654 345555553
Q ss_pred chhhhCHHHHHHHHHHhcccC
Q 028410 157 LAEALFPSRFVGEMERTVKIG 177 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~Lkpg 177 (209)
+.... ...++..+...-+.|
T Consensus 105 lPy~i-s~~il~~ll~~~~~g 124 (262)
T PF00398_consen 105 LPYNI-SSPILRKLLELYRFG 124 (262)
T ss_dssp ETGTG-HHHHHHHHHHHGGGC
T ss_pred ecccc-hHHHHHHHhhccccc
Confidence 43323 345666666644443
No 245
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.15 E-value=9.5e-05 Score=51.81 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=35.5
Q ss_pred EEEcCCCChhHHHHHhc--CC--ceEEEecCCCC---C------------CcEEEcCCCCC--CCCCCceeeEEcccchh
Q 028410 101 LCVSAGAGHEVMAFNSI--GV--ADVTGVELMDS---L------------PLVSRADPHNL--PFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 101 LDiGcG~G~~~~~la~~--~~--~~v~~vD~s~~---~------------~~~~~~d~~~~--~~~~~~fD~i~~~~~~~ 159 (209)
||+|+..|..+..+++. .. .+++++|..+. . +.++.++..+. .++.+++|+++...-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999999888872 22 37999999983 1 22455555431 13357899998853222
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.-.....+..+.+.|+|||.+++.
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 224566788899999999987653
No 246
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.10 E-value=0.00074 Score=51.27 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=39.0
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCC----------------CCcEEEcCCCCCC--CCCCc-eeeEEcc
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEA-FDVAFTA 155 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~-fD~i~~~ 155 (209)
.|+|..||.|..+.++|+.. .+|+++|+++. .++++.+|..+.. +..+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999984 59999999988 3358899987742 22222 8999985
No 247
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0028 Score=54.19 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=69.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCC---------------------------------c-------eEEEe
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------A-------DVTGV 125 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~---------------------------------~-------~v~~v 125 (209)
..++.+....++..++|--||+|.+.++.|..+. . .++|+
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 3344455678888999999999999999877431 1 37799
Q ss_pred cCCCCCC----------------cEEEcCCCCCCCCCCceeeEEccc-----chhhhCH----HHHHHHHHHhcccCcEE
Q 028410 126 ELMDSLP----------------LVSRADPHNLPFFDEAFDVAFTAH-----LAEALFP----SRFVGEMERTVKIGGVC 180 (209)
Q Consensus 126 D~s~~~~----------------~~~~~d~~~~~~~~~~fD~i~~~~-----~~~~~~~----~~~l~~~~r~LkpgG~l 180 (209)
|+++.++ +|.++|+.+++-+-+.+|+|+|+- +..+-.. ..+.+.+++.++.-+..
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 9999855 389999999875448999999982 2221112 33444555666666776
Q ss_pred EEEEec
Q 028410 181 MVLMEE 186 (209)
Q Consensus 181 il~~~~ 186 (209)
+++..+
T Consensus 341 v~tt~e 346 (381)
T COG0116 341 VFTTSE 346 (381)
T ss_pred EEEccH
Confidence 666554
No 248
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.002 Score=56.41 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=59.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------------EEEcCCCCCCCC---CCceeeEEc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRADPHNLPFF---DEAFDVAFT 154 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~---~~~fD~i~~ 154 (209)
...++.++||+=||.|.++..+|+.. .+|+|+|+++.+++ ++.++.++.... ...+|.|+.
T Consensus 290 ~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 290 ELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 34677899999999999999999764 59999999998553 677777775432 357899987
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.-- ...-..++++.+ ..++|-..++++++.
T Consensus 369 DPP-R~G~~~~~lk~l-~~~~p~~IvYVSCNP 398 (432)
T COG2265 369 DPP-RAGADREVLKQL-AKLKPKRIVYVSCNP 398 (432)
T ss_pred CCC-CCCCCHHHHHHH-HhcCCCcEEEEeCCH
Confidence 310 000012333333 345666665555543
No 249
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.83 E-value=0.0053 Score=46.26 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEE-EcCCCCC---------CCCCCceeeEEcccchhhh-----
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVS-RADPHNL---------PFFDEAFDVAFTAHLAEAL----- 161 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~-~~d~~~~---------~~~~~~fD~i~~~~~~~~~----- 161 (209)
+.+++-+|+..-..-....+.|..+|..+|.++-.++-. +-.+..+ .--.++||++.|.+..+|.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGRY 81 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRY 81 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccccc
Confidence 567777877744333333346777899999876433311 1111111 1124789999886544433
Q ss_pred -CH------HHHHHHHHHhcccCcEEEEEEecC
Q 028410 162 -FP------SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 162 -~~------~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|| .+.+.++.++|||||.+++.++..
T Consensus 82 GDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 82 GDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred CCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 22 778899999999999999998764
No 250
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.82 E-value=0.0028 Score=50.02 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=61.4
Q ss_pred EEEEcCCCChhHHHHHhcCC-ceEEEecCCCCCC----------------cEEEcCCCC-CCCCCCceeeEEcccchhhh
Q 028410 100 VLCVSAGAGHEVMAFNSIGV-ADVTGVELMDSLP----------------LVSRADPHN-LPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~~~~-~~v~~vD~s~~~~----------------~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~ 161 (209)
|.||||-.|+.+.+|.+.+. ..++++|+++.++ ++..+|... ++ +.+..|.|+.+.+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 68999999999999999754 4799999999844 366777443 32 22337888887665533
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
..+++.+....++....+++.-. .....++..+...+|
T Consensus 80 -I~~ILe~~~~~~~~~~~lILqP~----~~~~~LR~~L~~~gf 117 (205)
T PF04816_consen 80 -IIEILEAGPEKLSSAKRLILQPN----THAYELRRWLYENGF 117 (205)
T ss_dssp -HHHHHHHTGGGGTT--EEEEEES----S-HHHHHHHHHHTTE
T ss_pred -HHHHHHhhHHHhccCCeEEEeCC----CChHHHHHHHHHCCC
Confidence 45666666666666566555433 356667777776666
No 251
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.78 E-value=0.0026 Score=54.36 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.9
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
.+||+-||.|.++..+|+.. .+|+|+|.++.++
T Consensus 199 ~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av 231 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAV 231 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHH
T ss_pred cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHH
Confidence 89999999999999999974 5999999998754
No 252
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.78 E-value=0.0068 Score=49.07 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc--------------------E---EEcCCCCCCCCCCc-eee
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------------V---SRADPHNLPFFDEA-FDV 151 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~--------------------~---~~~d~~~~~~~~~~-fD~ 151 (209)
...+||++|+|+|..+...+.....+|...|+-..... + .-++..+..+-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 56789999999998888877754558888886554211 1 11112221121223 999
Q ss_pred EEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 152 i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
|+++.+.... .+..++.-+...|-.+|.+ +......+....+...
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i-~l~~~lr~~~~~~~~~ 211 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTI-FLAYPLRRDAAWEIEV 211 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeE-EEEEecccchHHHHHH
Confidence 9998766655 7788889999999999944 4444444433333333
No 253
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.62 E-value=0.0064 Score=50.09 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCChhH-HHHHh-cC-CceEEEecCCCCCC-----------------cEEEcCCCCCCCCCCceeeEEccc
Q 028410 97 HSKVLCVSAGAGHEV-MAFNS-IG-VADVTGVELMDSLP-----------------LVSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~-~~la~-~~-~~~v~~vD~s~~~~-----------------~~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
+.+|+=||||+=.++ ..+++ .+ ...++++|+++.++ .++.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999966544 44554 33 34799999999844 377888877765557899998865
Q ss_pred chhhh--CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEAL--FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~--~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+...- +..+++.++.+.++||.. ++++.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~--l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGAR--LVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSE--EEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcE--EEEec
Confidence 44322 679999999999999998 44443
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.62 E-value=0.012 Score=49.18 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~ 132 (209)
..+++..++|.=+|.|..+..+++ .+.++|+|+|.++.++
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al 57 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI 57 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 457888999999999999999988 3458999999998733
No 255
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.60 E-value=0.012 Score=48.19 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCCC--hhHHHHHh--cCCceEEEecCCCCC---------------CcEEEcCCCCCC-----------C-
Q 028410 96 NHSKVLCVSAGAG--HEVMAFNS--IGVADVTGVELMDSL---------------PLVSRADPHNLP-----------F- 144 (209)
Q Consensus 96 ~~~~iLDiGcG~G--~~~~~la~--~~~~~v~~vD~s~~~---------------~~~~~~d~~~~~-----------~- 144 (209)
.-...||+|||-- ....++++ .+..+|+-+|.+|.. ..++++|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 3468999999943 45566666 466799999998862 238889987732 1
Q ss_pred CCCceeeEEcccchhhh----CHHHHHHHHHHhcccCcEEEEEEecCCcc--cHHHHHHHhccc
Q 028410 145 FDEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFRTS 202 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~--~~~~~~~l~~~~ 202 (209)
.++..-+++. .+.+++ ++..++..+...|-||.++++.....+.. ....+.+.+.+.
T Consensus 148 ~~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~ 210 (267)
T PF04672_consen 148 FDRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQA 210 (267)
T ss_dssp TTS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHC
T ss_pred CCCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcC
Confidence 1334444443 444444 68999999999999999999998776432 224455555544
No 256
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.56 E-value=0.0024 Score=53.15 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=34.5
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~ 132 (209)
...++..++|.+||.|..+..+++. + .++|+|+|.++.++
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al 57 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI 57 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH
Confidence 4478889999999999999999985 3 57999999999754
No 257
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.53 E-value=0.0066 Score=47.51 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc----------------------EEEcCCCC-CC--CCCCc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL----------------------VSRADPHN-LP--FFDEA 148 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~----------------------~~~~d~~~-~~--~~~~~ 148 (209)
+....+.|||||-|.+...++. .+...+.|.+|-.+..+ +...+... +| |..++
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 5678899999999999999998 57778999988665222 22222221 11 11111
Q ss_pred eeeEEcccchhhh---------CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 149 FDVAFTAHLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 149 fD~i~~~~~~~~~---------~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
..=.+...-.-|. --..++.+..-+|++||.++.++... ....+..+.|...
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~--elh~wm~~~~e~h 199 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK--ELHEWMVKHLEEH 199 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH--HHHHHHHHHHHhC
Confidence 1111110000011 12567888999999999988887663 2344444444433
No 258
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.52 E-value=0.0034 Score=51.42 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=59.8
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCCC-------------------------CC-C
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNL-------------------------PF-F 145 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~~-------------------------~~-~ 145 (209)
+....+.+|||+|||+|..+......+...+...|.|.+.+..+..+.... -+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 456788999999999999999888877568888898888664221111110 00 0
Q ss_pred CC--ceeeEEcccchhhhC-HHHH-HHHHHHhcccCcEEEEEEec
Q 028410 146 DE--AFDVAFTAHLAEALF-PSRF-VGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 146 ~~--~fD~i~~~~~~~~~~-~~~~-l~~~~r~LkpgG~lil~~~~ 186 (209)
.+ .||+|.++-.....+ .+.+ .......++++|.++++...
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~ 236 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKK 236 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHh
Confidence 12 567776654444332 2333 45566777889987665443
No 259
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.33 E-value=0.057 Score=42.57 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCChhHHHHHh----c-CCceEEEecCCCC--------------CCcEEEcCCCCCC----C----CCCc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----I-GVADVTGVELMDS--------------LPLVSRADPHNLP----F----FDEA 148 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~-~~~~v~~vD~s~~--------------~~~~~~~d~~~~~----~----~~~~ 148 (209)
++..|+|+|.-.|..+...|. . +.++|+|+|++.. .+.+++||..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 578999999999988887765 2 5679999999422 4458888887642 1 1233
Q ss_pred eeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEE
Q 028410 149 FDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 149 fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..+|+.. ..|.. +..+.|+.....++||+++++-
T Consensus 112 ~vlVilD-s~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVILD-SSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEEES-S----SSHHHHHHHHHHT--TT-EEEET
T ss_pred ceEEEEC-CCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 4455543 22222 5677788899999999996654
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0071 Score=53.35 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=35.7
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
..+..+..++|+.||||.++..+++. .+.|+|+++++..++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVE 419 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcc
Confidence 35678899999999999999999885 569999999998664
No 261
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.029 Score=47.68 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=68.0
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc---C--CceEEEecCCCCCCc---------------EEEcCCCCC---------C
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI---G--VADVTGVELMDSLPL---------------VSRADPHNL---------P 143 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~---~--~~~v~~vD~s~~~~~---------------~~~~d~~~~---------~ 143 (209)
.++++.+|||+++-+|.-+..+.+. + .+.|++-|.++.-.. +...|+... +
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 3499999999999999999888772 2 247899898877221 222222222 1
Q ss_pred CCCCceeeEEcc-------------cchhh-------h----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHH
Q 028410 144 FFDEAFDVAFTA-------------HLAEA-------L----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQ 194 (209)
Q Consensus 144 ~~~~~fD~i~~~-------------~~~~~-------~----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~ 194 (209)
.....||-|++. ++... . -...++..-.+.||+||.++..+.+.+..+...
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa 306 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA 306 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence 234579999874 11111 0 125678889999999999999988876554444
No 262
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.11 E-value=0.0061 Score=44.71 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=29.5
Q ss_pred eEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCc
Q 028410 99 KVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL 133 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~ 133 (209)
.++|+|||.|..+..+++.+ ..+++++|+++.+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 48999999999999998853 348999999998554
No 263
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.95 E-value=0.027 Score=47.69 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=60.4
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcC-CCCCCCCCCceeeEEcccchh
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRAD-PHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d-~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...+++.+|+=+|+| .|..+..+++ .| .+|+++|.+++..+ ++... ....+--.+.||+|+..-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 355889999999888 3467777787 67 69999999998443 33332 1111111234999987322
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...+....+.||+||.++++-..
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEECCC
Confidence 45678889999999998777444
No 264
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.017 Score=48.87 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh-cC-CceEEEecCCCC---------------CCcEEEcCCCC--CCCC-CCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS-IG-VADVTGVELMDS---------------LPLVSRADPHN--LPFF-DEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~-~~-~~~v~~vD~s~~---------------~~~~~~~d~~~--~~~~-~~~fD~i~~~ 155 (209)
...+|||+|.|+|.-..++.. +| -.+++-++.|+. +..+-.+|+.. ++++ ...+++++..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 356799999999988776665 33 134555555543 22233333322 3332 3456666553
Q ss_pred c-chhhh---CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 156 H-LAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 156 ~-~~~~~---~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
+ +.+.- .....++.+...+.|||.++++.+..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 2 22211 12458899999999999998887764
No 265
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.87 E-value=0.0081 Score=42.35 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=26.9
Q ss_pred ceeeEEcccchhhh-----C--HHHHHHHHHHhcccCcEEEEEE
Q 028410 148 AFDVAFTAHLAEAL-----F--PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 148 ~fD~i~~~~~~~~~-----~--~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.||+|+|..+..++ | ...+++.+++.|+|||.+++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999997553322 2 3779999999999999987754
No 266
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.53 E-value=0.069 Score=44.04 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=66.9
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCCC--CCceeeEEccc------ch---
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFF--DEAFDVAFTAH------LA--- 158 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~~--~~~fD~i~~~~------~~--- 158 (209)
+++|+-||.|.....+.+.|...+.++|+++.+.+ ++.+|+.++... ...+|+++... ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 68999999999998888888878899999987443 467787776532 35799999851 00
Q ss_pred hhh-CH-HHHHH---HHHHhcccCcEEEEEEecCC------cccHHHHHHHhccccc
Q 028410 159 EAL-FP-SRFVG---EMERTVKIGGVCMVLMEECA------GREIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~-~~~l~---~~~r~LkpgG~lil~~~~~~------~~~~~~~~~l~~~~~~ 204 (209)
... ++ ..++. ++.+.++|. +++..+..+ ...++.+.+.|+..|+
T Consensus 82 ~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 82 KGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGY 136 (275)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCc
Confidence 111 22 22333 444455665 334444433 2346677777777665
No 267
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=0.071 Score=47.48 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCChhHHHHHhc-----CCceEEEecCCCCCCc---------------EEEcCCCCCCCCCCceeeEEccc
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDSLPL---------------VSRADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~-----~~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~~~~fD~i~~~~ 156 (209)
..+|+-+|+|-|.+.....+. -.-+++++|.+|+++- .+.+|+..++-|.++.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 567888899999887765431 2348999999998552 7889999998667999999883
Q ss_pred chhhh-C---HHHHHHHHHHhcccCcEE
Q 028410 157 LAEAL-F---PSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 157 ~~~~~-~---~~~~l~~~~r~LkpgG~l 180 (209)
+...+ | ..++|..+.+.|||+|..
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceE
Confidence 22222 2 378999999999999964
No 268
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.44 E-value=0.25 Score=39.24 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc----------------EEEcCCCCCCC-CCCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------------VSRADPHNLPF-FDEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~-~~~~fD~i~~~~ 156 (209)
+.+.++.|+||-.+++..++.+. ....+++.|+++.+++ +..+|... ++ ++..+|+++...
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAG 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAG 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeC
Confidence 56677999999999999999884 5678999999998553 44455422 23 345899998866
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+...+ -.+++++-.+.|+.=-++++.- +.....+++.+...++
T Consensus 94 MGG~l-I~~ILee~~~~l~~~~rlILQP----n~~~~~LR~~L~~~~~ 136 (226)
T COG2384 94 MGGTL-IREILEEGKEKLKGVERLILQP----NIHTYELREWLSANSY 136 (226)
T ss_pred CcHHH-HHHHHHHhhhhhcCcceEEECC----CCCHHHHHHHHHhCCc
Confidence 55433 4666666666666433433322 2344555555555444
No 269
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.40 E-value=0.11 Score=44.25 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=53.6
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhc----------CC-------ceEEEecCCCCCC------------------c----
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSI----------GV-------ADVTGVELMDSLP------------------L---- 133 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~----------~~-------~~v~~vD~s~~~~------------------~---- 133 (209)
......+|+|+||.+|..+..+... .. -+|+--|.-.+-- .
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 4467789999999999888876441 11 1566666543310 0
Q ss_pred EEEcCCCCCCCCCCceeeEEcccchhhh-C-H--------------------------------------HHHHHHHHHh
Q 028410 134 VSRADPHNLPFFDEAFDVAFTAHLAEAL-F-P--------------------------------------SRFVGEMERT 173 (209)
Q Consensus 134 ~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~-~--------------------------------------~~~l~~~~r~ 173 (209)
-+-+.+.+--||+++.|++++.+..|++ . | ..+|+.=.+-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 2234455545889999999996433333 1 1 2244444567
Q ss_pred cccCcEEEEEEecCC
Q 028410 174 VKIGGVCMVLMEECA 188 (209)
Q Consensus 174 LkpgG~lil~~~~~~ 188 (209)
|+|||++++.+...+
T Consensus 173 Lv~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEEE-S
T ss_pred eccCcEEEEEEeecc
Confidence 899999999986643
No 270
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.25 E-value=0.029 Score=45.35 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc--------------EEEcCCCCCCCC
Q 028410 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNLPFF 145 (209)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~ 145 (209)
+..+.+.+.. ...+..+|+|+|||.-.++...... +...++|+|++..+++ +...|...-+ +
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~ 168 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-P 168 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-T
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-C
Confidence 3444444432 3466899999999998888776663 3459999999998554 4556665543 4
Q ss_pred CCceeeEEcccchhhh
Q 028410 146 DEAFDVAFTAHLAEAL 161 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~ 161 (209)
....|+.+..-+...+
T Consensus 169 ~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 169 KEPADLALLLKTLPCL 184 (251)
T ss_dssp TSEESEEEEET-HHHH
T ss_pred CCCcchhhHHHHHHHH
Confidence 6789999987655555
No 271
>PRK13699 putative methylase; Provisional
Probab=95.14 E-value=0.038 Score=44.32 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=42.2
Q ss_pred EEEcCCCCC--CCCCCceeeEEcc--c-ch------------hhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHH
Q 028410 134 VSRADPHNL--PFFDEAFDVAFTA--H-LA------------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI 195 (209)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~i~~~--~-~~------------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~ 195 (209)
+..+|..+. .++++++|+|+.. + +. ... .....+.|+.|+|||||.+++.... .....+
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---~~~~~~ 80 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---NRVDRF 80 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---ccHHHH
Confidence 445665543 4677888888875 1 10 000 1257889999999999987654332 224456
Q ss_pred HHHhccccc
Q 028410 196 VELFRTSSF 204 (209)
Q Consensus 196 ~~l~~~~~~ 204 (209)
...+...||
T Consensus 81 ~~al~~~GF 89 (227)
T PRK13699 81 MAAWKNAGF 89 (227)
T ss_pred HHHHHHCCC
Confidence 666777776
No 272
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.12 E-value=0.11 Score=43.67 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=69.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE--------EcCCC-C-C---------CCCCCce
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS--------RADPH-N-L---------PFFDEAF 149 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~--------~~d~~-~-~---------~~~~~~f 149 (209)
....+.+.+||-+|+|+ |..+...|+ .|..+|+.+|+++..+++. .-+.. . . .+.+..+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 45669999999999996 555555566 6888999999999866511 10100 0 0 1223457
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
|+.|...- ....++.....+|+||.++++.......+++..--..+.
T Consensus 244 d~~~dCsG-----~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE 290 (354)
T KOG0024|consen 244 DVTFDCSG-----AEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKE 290 (354)
T ss_pred CeEEEccC-----chHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhhe
Confidence 77776432 234456678899999998888766666666554444433
No 273
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.08 E-value=0.058 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~ 130 (209)
.+.....|+|||.|.+..-|.+-|+ .=.|+|.-..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~R 91 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARRR 91 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC-Cccccccccc
Confidence 5778999999999999999988665 5568886544
No 274
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.96 E-value=0.16 Score=44.00 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=15.8
Q ss_pred CCCeEEEEcCCCChhHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAF 114 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~l 114 (209)
+...|+|+|||+|..+..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred cceeEEEecCCCCccHHHH
Confidence 4679999999999777655
No 275
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.79 E-value=0.031 Score=41.29 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=39.3
Q ss_pred eEEEecCCCCCCc----------------EEEcCCCCCC--CCCCceeeEEcc--cc---hhhh--C---HHHHHHHHHH
Q 028410 121 DVTGVELMDSLPL----------------VSRADPHNLP--FFDEAFDVAFTA--HL---AEAL--F---PSRFVGEMER 172 (209)
Q Consensus 121 ~v~~vD~s~~~~~----------------~~~~d~~~~~--~~~~~fD~i~~~--~~---~~~~--~---~~~~l~~~~r 172 (209)
+|+|.|+.+++++ ++..+=+++. .+.+++|+++.+ ++ ++.+ . ...+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4778888877543 3333333332 223589999876 22 2222 2 2678889999
Q ss_pred hcccCcEEEEEEecCCc
Q 028410 173 TVKIGGVCMVLMEECAG 189 (209)
Q Consensus 173 ~LkpgG~lil~~~~~~~ 189 (209)
.|+|||.++++++....
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999999887543
No 276
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.40 E-value=0.1 Score=44.15 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=71.6
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC------------------------cEEEcCCCCCCC-C
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP------------------------LVSRADPHNLPF-F 145 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~------------------------~~~~~d~~~~~~-~ 145 (209)
.+..++|..|.|--.|||.+....+..|. -|.|.||+-.++ +++.+|..+.|+ .
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 45569999999999999999999898885 999999986644 377888888775 3
Q ss_pred CCceeeEEccc-------------------------chhhh--C-------HHHHHHHHHHhcccCcEEEEEEec
Q 028410 146 DEAFDVAFTAH-------------------------LAEAL--F-------PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 146 ~~~fD~i~~~~-------------------------~~~~~--~-------~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+..||.|+|.- ..+.- . ..+.+.-..+.|.-||++++-.+.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 56899999950 00000 0 145667778999999998887663
No 277
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.38 E-value=0.042 Score=43.68 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC----------------CcEEEcCCCC----CCCCCCceeeEEcc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHN----LPFFDEAFDVAFTA 155 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~----------------~~~~~~d~~~----~~~~~~~fD~i~~~ 155 (209)
....|+|.-||.|..+...+..+. .|+++|++|.. +.|++||+.+ +.+....+|+++.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 667899999999999999888765 89999999873 3488999876 44555668888875
No 278
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.35 E-value=0.14 Score=44.01 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=60.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC--------CC-CCCceeeE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL--------PF-FDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~--------~~-~~~~fD~i 152 (209)
...+.++.+||..|||+ |..+..+++ .|..+++++|.+++..+. ...+..+. .+ ....+|++
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 34567889999999987 888888887 565569999987653321 11111111 11 22368888
Q ss_pred Ecccch---------------hh-hCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLA---------------EA-LFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~---------------~~-~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+..--. .. -++...+.++.+.++|+|+++..-
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 774210 01 134668899999999999987764
No 279
>PRK11524 putative methyltransferase; Provisional
Probab=94.26 E-value=0.069 Score=44.24 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=37.5
Q ss_pred CcEEEcCCCCC--CCCCCceeeEEcc--c-c-------------hhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 132 PLVSRADPHNL--PFFDEAFDVAFTA--H-L-------------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 132 ~~~~~~d~~~~--~~~~~~fD~i~~~--~-~-------------~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
..++.+|..+. .+++++||+|+++ + . ..+. ...+.+.++.|+|||||.+++....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 34566776663 4567889999885 1 1 0011 1257889999999999999886543
No 280
>PRK10742 putative methyltransferase; Provisional
Probab=94.16 E-value=0.068 Score=43.32 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.6
Q ss_pred cCCCCC--eEEEEcCCCChhHHHHHhcCCceEEEecCCCC
Q 028410 93 LLFNHS--KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (209)
Q Consensus 93 ~~~~~~--~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~ 130 (209)
.++++. +|||.=+|+|..+..++..|. +|+++|-++.
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~ 121 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPV 121 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHH
Confidence 346666 999999999999999999987 6999999987
No 281
>PHA01634 hypothetical protein
Probab=94.04 E-value=0.077 Score=38.57 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
-.+.+|+|||++-|..+.+++-.|...|+++++++...
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~ 64 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR 64 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH
Confidence 46789999999999999999999989999999998844
No 282
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.87 E-value=0.31 Score=40.78 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=56.0
Q ss_pred CCeEEEEcCCCChhHHHHHh-c--------C---C---------ceEEEecCCCC-------------------------
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-I--------G---V---------ADVTGVELMDS------------------------- 130 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~--------~---~---------~~v~~vD~s~~------------------------- 130 (209)
..+||+||.|.|.-..+++. . . . .+++.||+.+-
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 47999999999876666654 2 0 0 27888988764
Q ss_pred ---------CCcEEEcCCCCCCCCC-------CceeeEEcccchhhh------CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 131 ---------LPLVSRADPHNLPFFD-------EAFDVAFTAHLAEAL------FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~-------~~fD~i~~~~~~~~~------~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.+.|.+.|+-.+..++ .+.|+|........+ ...+++..+-..++||..++++...
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 0115566665544221 245666543222222 2377899999999998887655443
No 283
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.72 E-value=0.19 Score=42.19 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=28.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~ 132 (209)
..+++...+|.=-|.|..+..+.+ .+.++++|+|.++.++
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~ 57 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL 57 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH
Confidence 458889999999999999999987 4558999999998855
No 284
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.51 E-value=0.28 Score=44.56 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=58.7
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHh-cCC-ceEEEecCCCCCC----cEEEcCCCC----CC----CCCCceeeEEcc
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNS-IGV-ADVTGVELMDSLP----LVSRADPHN----LP----FFDEAFDVAFTA 155 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~-~~~-~~v~~vD~s~~~~----~~~~~d~~~----~~----~~~~~fD~i~~~ 155 (209)
...++.+...|||+||.+|.+.+..++ .|. +-|+|+|+-|..+ ...+.|++. .+ +..-..|+|+..
T Consensus 38 ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhD 117 (780)
T KOG1098|consen 38 KYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHD 117 (780)
T ss_pred HhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeec
Confidence 345679999999999999999998887 343 4799999987632 234445443 11 122345888874
Q ss_pred c--------chhhh-C---HHHHHHHHHHhcccCcEE
Q 028410 156 H--------LAEAL-F---PSRFVGEMERTVKIGGVC 180 (209)
Q Consensus 156 ~--------~~~~~-~---~~~~l~~~~r~LkpgG~l 180 (209)
. +.... . ....+.-....|..||.+
T Consensus 118 gapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f 154 (780)
T KOG1098|consen 118 GAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF 154 (780)
T ss_pred CCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc
Confidence 1 11111 1 134456667788999993
No 285
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.41 E-value=0.86 Score=34.71 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=49.1
Q ss_pred EcCCCCCC----CCCCceeeEEcc--cchh-------hh-----CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 136 RADPHNLP----FFDEAFDVAFTA--HLAE-------AL-----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 136 ~~d~~~~~----~~~~~fD~i~~~--~~~~-------~~-----~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
-.|+.++. ...+.||.|+-+ |+-. .+ -...+++...++|+++|.+.+.......+....+.+
T Consensus 59 ~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~ 138 (166)
T PF10354_consen 59 GVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEE 138 (166)
T ss_pred CCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHH
Confidence 44555543 356889999986 2320 00 137788999999999999999988876666677777
Q ss_pred Hhccccc
Q 028410 198 LFRTSSF 204 (209)
Q Consensus 198 l~~~~~~ 204 (209)
+-.+.++
T Consensus 139 lA~~~gl 145 (166)
T PF10354_consen 139 LAAEAGL 145 (166)
T ss_pred HHHhcCC
Confidence 7777776
No 286
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.22 Score=37.26 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
.++..+.+|+|+|.|+...+.++.|....+|+++++-.+. |...|+-...+.+-.+-+||..
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFga-- 147 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGA-- 147 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeeh--
Confidence 3677899999999999999988877668899999987442 5555555555545445555542
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
...+ .++-.++.--+..|..++-+
T Consensus 148 es~m--~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 148 ESVM--PDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred HHHH--hhhHHHHHhhCcCCCeEEEE
Confidence 1111 12223333345556665444
No 287
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.31 E-value=0.1 Score=43.24 Aligned_cols=90 Identities=24% Similarity=0.264 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCCc-------------------EEEcCCCCC--CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHNL--PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~~-------------------~~~~d~~~~--~~~~~~fD~i 152 (209)
.++.++|-||-|.|...+..... ..+++.-+|+.+..++ ...||...+ ..+.++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 66789999999999999888774 4568888888776332 445554331 1347899999
Q ss_pred Eccc---c--hhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAH---L--AEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~---~--~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+..- + ...+.....+..+.+.||+||+++..-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8741 1 112245778899999999999965544
No 288
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.21 E-value=0.067 Score=42.99 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=39.2
Q ss_pred CeEEEEcCCCChhHHHHHhcCCceEEEecCCCC------------------------CCcEEEcCCCC-CCCCCCceeeE
Q 028410 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFFDEAFDVA 152 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~~~~fD~i 152 (209)
.+|||.=+|-|..+..++..|. +|+++|-|+. .++++.+|..+ ++.++++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4999999999999999998886 8999999986 12377888777 55668999999
Q ss_pred Ecccch
Q 028410 153 FTAHLA 158 (209)
Q Consensus 153 ~~~~~~ 158 (209)
...-++
T Consensus 156 Y~DPMF 161 (234)
T PF04445_consen 156 YFDPMF 161 (234)
T ss_dssp EE--S-
T ss_pred EECCCC
Confidence 986433
No 289
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=0.085 Score=44.97 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCcEEEcCCC---------------CCCC-CCCceeeEEcccchh
Q 028410 97 HSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPLVSRADPH---------------NLPF-FDEAFDVAFTAHLAE 159 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~~~~~d~~---------------~~~~-~~~~fD~i~~~~~~~ 159 (209)
..+|+|.=+|+|.=++..+. .+..+++.-|+||++++.+..++. .+=. ....||+| +++-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~I---DiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVI---DIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEE---ecCC
Confidence 78999999999999999887 555589999999997663322221 1111 12566666 2233
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...|..++....+.+|.||.+.+..-.
T Consensus 130 FGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 130 FGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred CCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 335799999999999999997766544
No 290
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.17 E-value=0.56 Score=38.47 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=59.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC--------CCcEEEcCCCCCCCCCCceeeEEc
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFT 154 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~i~~ 154 (209)
.+++.-.....+.+++...|+|+-+|.++..|-+.+- .|++||--+- .++....|-....-.....|..+|
T Consensus 198 tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 198 TFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred HhcChhhhhhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEe
Confidence 3333333334459999999999999999999999865 9999996554 233555565554434577999999
Q ss_pred ccchhhhCHHHHHHHHHHhccc
Q 028410 155 AHLAEALFPSRFVGEMERTVKI 176 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~Lkp 176 (209)
.-+.. |.++-.-|...|..
T Consensus 277 DmVEk---P~rv~~li~~Wl~n 295 (358)
T COG2933 277 DMVEK---PARVAALIAKWLVN 295 (358)
T ss_pred ehhcC---cHHHHHHHHHHHHc
Confidence 64433 54444445454443
No 291
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.15 E-value=0.37 Score=40.68 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCC-----CCCCCCceeeEEcccchhh
Q 028410 95 FNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHN-----LPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 95 ~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~-----~~~~~~~fD~i~~~~~~~~ 160 (209)
.++.+||=.||| .|..+..+++ .|..+|+++|.+++..+. ...|..+ .....+.+|+++...-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 468899988875 2344444555 466579999988764331 1112111 1111234888876311
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEE
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+....+.+++||+++++-
T Consensus 245 --~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 --HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred --CHHHHHHHHHHhhcCCEEEEEc
Confidence 1345778889999999987664
No 292
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.14 E-value=0.94 Score=36.59 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCc--------------EEEcCCCC-CCC-CCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL--------------VSRADPHN-LPF-FDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~--------------~~~~d~~~-~~~-~~~~fD~i~~~~~ 157 (209)
-.+.+||.+|=.. ..+.+++- ....+|+.+|+++..++ ....|..+ +|- -.++||++++.-.
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 4688999999443 44555554 33469999999998554 55666655 331 2489999999532
Q ss_pred hhhhCHHHHHHHHHHhcccCc-EEEEEEecCC--cccHHHHHHHhcccccc
Q 028410 158 AEALFPSRFVGEMERTVKIGG-VCMVLMEECA--GREIKQIVELFRTSSFT 205 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG-~lil~~~~~~--~~~~~~~~~l~~~~~~~ 205 (209)
...--..-++......||..| ..++.+.... ......+.+.+...|++
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 211123667788888898755 6556555543 22334577777777763
No 293
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.13 E-value=0.85 Score=38.05 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=33.7
Q ss_pred ccCCCCCeEEEEcCCCChhHHHHHhc-C-CceEEEecCCCCCC
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSLP 132 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~la~~-~-~~~v~~vD~s~~~~ 132 (209)
...+++...+|.=-|.|..+..+.+. + .+.++|+|.++.++
T Consensus 19 L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai 61 (314)
T COG0275 19 LAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI 61 (314)
T ss_pred cccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH
Confidence 35688899999999999999998874 3 46899999998743
No 294
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.05 E-value=0.24 Score=42.64 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCCC------------------------cEE
Q 028410 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------------LVS 135 (209)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~~------------------------~~~ 135 (209)
....+....+...++++....|+|+|-|.....++.. +...-.|+++.+..- +.+
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 3344444555558899999999999999999998885 455777888877632 245
Q ss_pred EcCCCCCC---CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEE
Q 028410 136 RADPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 136 ~~d~~~~~---~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~li 181 (209)
++++.+.. .-....++|+.+++...-+...=+.++..-+++|-+++
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEe
Confidence 55554432 12456788888776553333333458899999999843
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.91 E-value=0.15 Score=43.43 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEEEc----CCCCCC-----------CCC-CceeeEEccc
Q 028410 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVSRA----DPHNLP-----------FFD-EAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~~~----d~~~~~-----------~~~-~~fD~i~~~~ 156 (209)
.++.+|+=+|||+ |..+..+++ .|..+|+.+|.++..++.... +....+ ... ..+|+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 4455999999996 566566666 588899999999986652211 100111 111 3688887632
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
- ....+..+.+.+||||.++++--.
T Consensus 247 G-----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 G-----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred C-----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 1 344788999999999998777443
No 296
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.80 E-value=0.33 Score=43.59 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCC-----------CC----------
Q 028410 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHN-----------LP---------- 143 (209)
Q Consensus 95 ~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~-----------~~---------- 143 (209)
.++.+|+=+|||. |..+...++ .|. +|+++|.+++..+ +...|..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 5799999999994 555555566 576 8999999987332 22222211 00
Q ss_pred CCC--CceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 144 FFD--EAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 144 ~~~--~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.+ ..+|+++.......- .|..+.+++.+.+||||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 358999985433221 344446999999999999877654
No 297
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.79 E-value=1 Score=32.64 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=36.5
Q ss_pred CCCCeEEEEcCCCCh-hHHHHHhcCCceEEEecCCCC----CCcEEEcCCCCCCCC-CCceeeEEccc
Q 028410 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDS----LPLVSRADPHNLPFF-DEAFDVAFTAH 156 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~-~~~~la~~~~~~v~~vD~s~~----~~~~~~~d~~~~~~~-~~~fD~i~~~~ 156 (209)
.+..+|+|+|-|.-. .+..|++.|. .|+++|+++. .+.++.-|+.+..+. -...|+|.+-.
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeC
Confidence 456699999999764 4444556786 9999999998 677888888875432 25688888843
No 298
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.38 E-value=0.43 Score=39.86 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChhHHHHH-h-cCCceEEEecCCCCCC
Q 028410 97 HSKVLCVSAGAGHEVMAFN-S-IGVADVTGVELMDSLP 132 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la-~-~~~~~v~~vD~s~~~~ 132 (209)
..++||||+|....=.-|+ + +++ +++|+|+++..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl 139 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSL 139 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHH
Confidence 5799999999875433333 3 565 999999998733
No 299
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.18 E-value=2 Score=30.69 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCCC-hhHHHHHhcCCceEEEecCCCCCC----cEEEcCCCCCCCC-CCceeeEEcccchhhhCHHHHHH
Q 028410 95 FNHSKVLCVSAGAG-HEVMAFNSIGVADVTGVELMDSLP----LVSRADPHNLPFF-DEAFDVAFTAHLAEALFPSRFVG 168 (209)
Q Consensus 95 ~~~~~iLDiGcG~G-~~~~~la~~~~~~v~~vD~s~~~~----~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~~~~~l~ 168 (209)
....+|.++|.|.= ..+..|++.|+ .++++|+++... .+.+-|+.+.... -...|+|.+-. .|.++..
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppEl~~ 85 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPELQS 85 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccccCcccceEEEccCCCccHHHhhCccceeecC-----CCHHHHH
Confidence 44569999999854 34556677887 999999998743 3788888876531 24567776621 3555666
Q ss_pred HHHHhccc
Q 028410 169 EMERTVKI 176 (209)
Q Consensus 169 ~~~r~Lkp 176 (209)
.+.++-+.
T Consensus 86 ~ildva~a 93 (129)
T COG1255 86 AILDVAKA 93 (129)
T ss_pred HHHHHHHh
Confidence 66666554
No 300
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.15 E-value=1.6 Score=36.12 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=56.3
Q ss_pred hcccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCCC------CCCCCceeeEE
Q 028410 90 GKSLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHNL------PFFDEAFDVAF 153 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~~------~~~~~~fD~i~ 153 (209)
....+.++.+||..|+| .|..+..+++ .|. +|++++.++...+ .+..+-... ....+.+|+++
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 34456788899998876 3667777777 565 7889888765332 111111110 12345688887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
... .....+.++.+.|+++|.++...
T Consensus 238 d~~-----g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 238 DFV-----GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ECC-----CCHHHHHHHHHHhhcCCEEEEEC
Confidence 531 12356788999999999987653
No 301
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=91.60 E-value=0.11 Score=44.80 Aligned_cols=89 Identities=25% Similarity=0.259 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh--cCCceEEEecCCCCCCcEE-----------------EcCCCCC-CCCCCceeeEEc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDSLPLVS-----------------RADPHNL-PFFDEAFDVAFT 154 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~--~~~~~v~~vD~s~~~~~~~-----------------~~d~~~~-~~~~~~fD~i~~ 154 (209)
..+.++||.=+|+|.=+...+. .+..+|+.-|+|+++++.+ ..|+..+ ....+.||+|
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~I-- 125 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVI-- 125 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEE--
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEE--
Confidence 3567999999999988887776 2557999999999855432 2333221 1245678888
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++-+..|..++....+.+|.||.+.+..-+
T Consensus 126 -DlDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 126 -DLDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -EE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred -EeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 3344446899999999999999997776544
No 302
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.38 E-value=0.56 Score=38.42 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-c-----CCceEEEecCCCC
Q 028410 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-I-----GVADVTGVELMDS 130 (209)
Q Consensus 83 ~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~-----~~~~v~~vD~s~~ 130 (209)
.++..+.....+.+...++|+|||.|.++.++++ . +...++.||....
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 3566666777889999999999999999999988 3 2347888987654
No 303
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.33 E-value=0.75 Score=42.67 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-------C-----CceEEEecCCCCC------------------------------
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-------G-----VADVTGVELMDSL------------------------------ 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-------~-----~~~v~~vD~s~~~------------------------------ 131 (209)
++.-+|+|+|=|+|.......+ . + .-+++++|..|-.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 4558999999999986555432 1 1 2378888875420
Q ss_pred -------------CcEEEcCCCC-CCCCCCceeeEEcccchhhhCH----HHHHHHHHHhcccCcEEEEEEecCCcccHH
Q 028410 132 -------------PLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIK 193 (209)
Q Consensus 132 -------------~~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~ 193 (209)
+....+|+.+ ++--+..||+++...+.-..+| .++++++.|.++|||.+ .+.. .-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~--~t~t----~a~ 209 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATL--ATFT----SAG 209 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEE--EEee----hHH
Confidence 0133445433 2211256899988654433344 88999999999999984 4443 234
Q ss_pred HHHHHhccccc
Q 028410 194 QIVELFRTSSF 204 (209)
Q Consensus 194 ~~~~l~~~~~~ 204 (209)
.++.-+..+||
T Consensus 210 ~vr~~l~~~GF 220 (662)
T PRK01747 210 FVRRGLQEAGF 220 (662)
T ss_pred HHHHHHHHcCC
Confidence 45666666666
No 304
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.81 E-value=2.1 Score=33.98 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=56.6
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC-------CCCCceeeEE
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP-------FFDEAFDVAF 153 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~-------~~~~~fD~i~ 153 (209)
....+.++.+||..|+|+ |.....+++ .| .+|++++.++...+.. ..+..+.. ...+.+|+++
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 334457889999999986 555555666 46 4899998876432211 11111111 1235689888
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
...- ....+....+.++++|.++......
T Consensus 207 ~~~~-----~~~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 207 DAVG-----GPETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ECCC-----CHHHHHHHHHhcccCCEEEEEccCC
Confidence 6321 1145677889999999987765443
No 305
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.69 E-value=0.26 Score=38.54 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=29.8
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL 131 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~ 131 (209)
...++..|||.-||+|..+.+..+.+. +.+|+|+++..
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y 225 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEY 225 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHH
T ss_pred hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHH
Confidence 358899999999999999999888864 99999998753
No 306
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=89.92 E-value=4.6 Score=30.62 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC-----cEEEcCCCCC---C--CCCCceeeEEcccchhhhC-H
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----LVSRADPHNL---P--FFDEAFDVAFTAHLAEALF-P 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~-----~~~~~d~~~~---~--~~~~~fD~i~~~~~~~~~~-~ 163 (209)
.+..+|+.+||-+-.....-...+..++.-.|++...- .+..-|.... | + .++||+|++.-=+-.-+ .
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEEL-KGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhc-CCCceEEEECCCCCCHHHH
Confidence 56789999999865554433113345888888876622 2665565542 2 2 57999999952111001 2
Q ss_pred HHHHHHHHHhcccCcEEEEEEecC
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+....+...+|+++.++++++..
T Consensus 103 ~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 103 TKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred HHHHHHHHHHhCccceEEEecHHH
Confidence 344456666668899999888864
No 307
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.71 E-value=0.094 Score=46.29 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c-CCceEEEecCCCCCCcEEEcCCCCC--------------------CCCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I-GVADVTGVELMDSLPLVSRADPHNL--------------------PFFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~-~~~~v~~vD~s~~~~~~~~~d~~~~--------------------~~~~~~fD~i 152 (209)
.++.+|||.=|++|.-+...+. . +..+|++-|.++..++.++.+++-. +-.+..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 5678999999999998888887 3 6789999999998776333332211 2234778888
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
-. +-+..+..+|....+.++.||.+++..-.
T Consensus 188 DL---DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DL---DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ec---CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 43 33335788999999999999998776544
No 308
>PRK11524 putative methyltransferase; Provisional
Probab=89.23 E-value=0.39 Score=39.78 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
..++..|||--||+|..+.+..+.| .+.+|+|++++..+
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~ 244 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIK 244 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHH
Confidence 4889999999999999999888886 49999999998554
No 309
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.08 E-value=4.8 Score=32.27 Aligned_cols=60 Identities=17% Similarity=0.040 Sum_probs=43.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCC---------CcEEEcCCCCC-----------CCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSL---------PLVSRADPHNL-----------PFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~---------~~~~~~d~~~~-----------~~~~~~fD 150 (209)
.....||-.||.+|..+.+++. .|+ .|++.-.+-+. +.....|+.+. .+++++.|
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld 83 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD 83 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence 5678999999999999988876 376 88887655442 22445555542 25789999
Q ss_pred eEEcc
Q 028410 151 VAFTA 155 (209)
Q Consensus 151 ~i~~~ 155 (209)
+.+.+
T Consensus 84 ~L~NN 88 (289)
T KOG1209|consen 84 LLYNN 88 (289)
T ss_pred EEEcC
Confidence 99875
No 310
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.05 E-value=1.2 Score=36.94 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcEEEc----CCCCCCCCCCceeeEEcccchhhhCHHHHHH
Q 028410 95 FNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLVSRA----DPHNLPFFDEAFDVAFTAHLAEALFPSRFVG 168 (209)
Q Consensus 95 ~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~~~~----d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~ 168 (209)
.++.++|=+||| -|..+..+++ .|...|.++|.++..++.... |..+. ....+|+|+-..- ....+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G-----~~~~~~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG-----DPSLID 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC-----CHHHHH
Confidence 356788888875 3455555665 576567788887664432211 11110 1245888876311 234567
Q ss_pred HHHHhcccCcEEEEEE
Q 028410 169 EMERTVKIGGVCMVLM 184 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~ 184 (209)
+..+.+++||+++++-
T Consensus 216 ~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 216 TLVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHHhhhcCcEEEEEe
Confidence 8889999999988654
No 311
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.76 E-value=2.1 Score=36.28 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=52.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~ 153 (209)
...++++.+||=.|+|. |..+..+++ .|..+|+++|.++...++ ...+..+.. .....+|+++
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 34568899999998752 344455555 465469999887763321 111211111 1123578887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
-.-- ....+.+..+.+++||+++++
T Consensus 251 d~~g-----~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 DAVG-----RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ECCC-----CHHHHHHHHHHhccCCEEEEE
Confidence 5211 124567778899999997765
No 312
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=88.65 E-value=3 Score=37.37 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cC----CceEEEecCCCCCCc----------------EEEcCCCCCC-C----CCCc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IG----VADVTGVELMDSLPL----------------VSRADPHNLP-F----FDEA 148 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~----~~~v~~vD~s~~~~~----------------~~~~d~~~~~-~----~~~~ 148 (209)
.+..+|.|-.||+|.......+ .+ ...++|.|+++.... ...+|...-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 5677999999999988777666 22 246899998776221 2222222222 2 3367
Q ss_pred eeeEEcccch---------------------hhh-----CHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 149 FDVAFTAHLA---------------------EAL-----FPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 149 fD~i~~~~~~---------------------~~~-----~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
||+|+++.-+ ... ....+++.+...|+|||+..+++...
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 9999986100 000 01678899999999999777666553
No 313
>PRK13699 putative methylase; Provisional
Probab=86.96 E-value=0.87 Score=36.49 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
...++..|||--||+|..+.+..+.|. +.+|+|+++...+
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~ 199 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHR 199 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHH
Confidence 347899999999999999998888765 9999999887443
No 314
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.96 E-value=2.2 Score=34.57 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc---------CCceEEEecCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI---------GVADVTGVELMDSL 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~---------~~~~v~~vD~s~~~ 131 (209)
....+|+|+|+|+|.++..+.+. ...+++-||+|+.+
T Consensus 17 ~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 17 SEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 34589999999999999888761 12489999999983
No 315
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.85 E-value=2.1 Score=36.14 Aligned_cols=89 Identities=9% Similarity=-0.032 Sum_probs=52.0
Q ss_pred CCCCCeEEEEcCCC-ChhHHHHHh--cCCceEEEecCCCCCCcEEEc-CCC-CC-CCCC-CceeeEEcccchhhhCHHHH
Q 028410 94 LFNHSKVLCVSAGA-GHEVMAFNS--IGVADVTGVELMDSLPLVSRA-DPH-NL-PFFD-EAFDVAFTAHLAEALFPSRF 166 (209)
Q Consensus 94 ~~~~~~iLDiGcG~-G~~~~~la~--~~~~~v~~vD~s~~~~~~~~~-d~~-~~-~~~~-~~fD~i~~~~~~~~~~~~~~ 166 (209)
.+++.+||-+|||. |..+..+++ .|..+|+++|.+++..+.... +.. .. .+.+ ..+|+|+-.- ........
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~--G~~~~~~~ 238 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECV--GGRGSQSA 238 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECC--CCCccHHH
Confidence 46789999999753 233334444 344589999998875543211 110 00 1111 2478887521 10012456
Q ss_pred HHHHHHhcccCcEEEEEE
Q 028410 167 VGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 167 l~~~~r~LkpgG~lil~~ 184 (209)
+.+..+.+++||+++++-
T Consensus 239 ~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 239 INQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HHHHHHhCcCCcEEEEEe
Confidence 788899999999987653
No 316
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.72 E-value=2.2 Score=35.47 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=52.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC------CCCCceeeEEcc
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP------FFDEAFDVAFTA 155 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~------~~~~~fD~i~~~ 155 (209)
...+.++.+||-+|+|. |..+..+++ .|...++.++.+++..++ ...+..+.. .....+|+++..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 34567889999998642 445555555 465448888776653321 111111111 134568998863
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.- ....+.++.+.|+++|.++.+-
T Consensus 234 ~~-----~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG-----VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC-----ChHHHHHHHHHHhcCCEEEEEe
Confidence 11 1346778899999999987653
No 317
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.62 E-value=1.1 Score=39.68 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCC-----C----------CCCCCCCceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADP-----H----------NLPFFDEAFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~-----~----------~~~~~~~~fD~ 151 (209)
..+.++|-+|-|+|.+...+.. .+...++++++.|.++++ .+.+- . +..-.+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 5678999999999999988876 676799999999998762 22220 0 11124577999
Q ss_pred EEcc--cc-hhhh-C-H-----HHHHHHHHHhcccCcEEEEEEecCCcccHHH
Q 028410 152 AFTA--HL-AEAL-F-P-----SRFVGEMERTVKIGGVCMVLMEECAGREIKQ 194 (209)
Q Consensus 152 i~~~--~~-~~~~-~-~-----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~ 194 (209)
+... .- .+-+ . | ..++..+...|.|-|.+++..-..+.....+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~ 426 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDE 426 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHH
Confidence 8763 11 2212 1 1 6778899999999999988776655444333
No 318
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.33 E-value=0.55 Score=33.44 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=48.8
Q ss_pred CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC-------C-CCCCceeeEEcccchhhhCHHHHHHHH
Q 028410 107 AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL-------P-FFDEAFDVAFTAHLAEALFPSRFVGEM 170 (209)
Q Consensus 107 ~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~-------~-~~~~~fD~i~~~~~~~~~~~~~~l~~~ 170 (209)
-|..+..+++ .| .+|+++|.++...++ ...|..+. . .+.+.+|+++-.-- -...+++.
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~~~~~~~ 75 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SGDTLQEA 75 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SHHHHHHH
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cHHHHHHH
Confidence 4677777877 57 699999988864331 11122221 1 23357999976321 24678899
Q ss_pred HHhcccCcEEEEEEecC
Q 028410 171 ERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 171 ~r~LkpgG~lil~~~~~ 187 (209)
.+.++|||.++++-...
T Consensus 76 ~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 76 IKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHEEEEEEEEEESSTS
T ss_pred HHHhccCCEEEEEEccC
Confidence 99999999987775554
No 319
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=85.83 E-value=5.5 Score=33.18 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCC-----CCCCCCCceeeEEcccchhhh
Q 028410 96 NHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPH-----NLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 96 ~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~-----~~~~~~~~fD~i~~~~~~~~~ 161 (209)
++.+||-.|||. |..+..+++ .|..++++++.++...+. ...+.. +.....+.+|+++...-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 788899988765 556666666 465578888877553220 011111 11111234888876321
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+.+..+.|+++|+++.+.
T Consensus 241 -~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -CHHHHHHHHHHHhcCCEEEEEe
Confidence 1235778899999999987653
No 320
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.42 E-value=7.8 Score=32.33 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=61.8
Q ss_pred CCeEEEEcCC--CChhHHHHHhcCCceEEEecCCCCCCc-------E-EEcCC--CCC------CCCCCceeeEEcccch
Q 028410 97 HSKVLCVSAG--AGHEVMAFNSIGVADVTGVELMDSLPL-------V-SRADP--HNL------PFFDEAFDVAFTAHLA 158 (209)
Q Consensus 97 ~~~iLDiGcG--~G~~~~~la~~~~~~v~~vD~s~~~~~-------~-~~~d~--~~~------~~~~~~fD~i~~~~~~ 158 (209)
.++|+=+|+| .|.++..|++.|. +|+.++.+++.++ + +..+- ... +-+.+.||+|+.. .
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~--v 78 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA--C 78 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEE--C
Confidence 3578889988 3456666666665 8888887643211 1 11111 111 1123579999873 2
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
...+..+.+..+...+.++..++.+.+..+ ....+.+.|....
T Consensus 79 K~~~~~~al~~l~~~l~~~t~vv~lQNGv~--~~e~l~~~~~~~~ 121 (305)
T PRK05708 79 KAYDAEPAVASLAHRLAPGAELLLLQNGLG--SQDAVAARVPHAR 121 (305)
T ss_pred CHHhHHHHHHHHHhhCCCCCEEEEEeCCCC--CHHHHHHhCCCCc
Confidence 223467788999999999998777766654 3445666665443
No 321
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=85.20 E-value=2 Score=35.55 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=66.6
Q ss_pred eEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC--------cEEEcCCCCCC---CCCCceeeEEcc---------cch
Q 028410 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHNLP---FFDEAFDVAFTA---------HLA 158 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~--------~~~~~d~~~~~---~~~~~fD~i~~~---------~~~ 158 (209)
+++|+-||-|.....+.+.|+.-+.++|+++... ....+|+.++. ++. .+|+++.. .-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~ 80 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKR 80 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEeccCCceEeccccc
Confidence 7899999999999999998887899999998844 46677877765 443 59999874 111
Q ss_pred hhh-CH----HHHHHHHHHhcccCcEEEEEEecCCc------ccHHHHHHHhccccc
Q 028410 159 EAL-FP----SRFVGEMERTVKIGGVCMVLMEECAG------REIKQIVELFRTSSF 204 (209)
Q Consensus 159 ~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~~------~~~~~~~~l~~~~~~ 204 (209)
... |+ -.-+.++.+.++|.-. +..+..+- ..+..+.+.|+..|+
T Consensus 81 ~~~~d~r~~L~~~~~~~v~~~~Pk~~--~~ENV~~l~~~~~~~~~~~i~~~l~~lGY 135 (335)
T PF00145_consen 81 KGFDDPRNSLFFEFLRIVKELKPKYF--LLENVPGLLSSKNGEVFKEILEELEELGY 135 (335)
T ss_dssp HCCCCHTTSHHHHHHHHHHHHS-SEE--EEEEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred cccccccchhhHHHHHHHhhccceEE--Eecccceeeccccccccccccccccccce
Confidence 111 23 2234555666788554 44444321 346777777777665
No 322
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=84.95 E-value=0.68 Score=40.65 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
....+||||+|||.++...+..|...|++++.-..|.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d 103 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVD 103 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHH
Confidence 34579999999999998877777779999998777654
No 323
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.63 E-value=4.9 Score=34.22 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=52.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-------CCCCceeeEEc
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAFT 154 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~i~~ 154 (209)
...++++.+||=.|+|. |..+..+++ .|..+|+++|.++...++ ...+..+.. ...+.+|+++.
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 34567888999998752 344444555 465579999988763321 111111110 11235788875
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..- ....+....+.+++||.++.+-
T Consensus 266 ~~G-----~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 266 MAG-----SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCC-----ChHHHHHHHHHHhcCCEEEEEc
Confidence 211 1345777889999999977653
No 324
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.58 E-value=2.5 Score=35.70 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCC---CCCCc------EEEcCCCCCC----CCCCceeeEEcccch
Q 028410 94 LFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELM---DSLPL------VSRADPHNLP----FFDEAFDVAFTAHLA 158 (209)
Q Consensus 94 ~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s---~~~~~------~~~~d~~~~~----~~~~~fD~i~~~~~~ 158 (209)
..++.+||-+|+|. |..+..+++ .|. +|++++.+ +...+ ....+..+.. ...+.+|+|+-..-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC-
Confidence 35788999998763 455555666 466 89998863 33211 0111211111 01245788876321
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+.+..+.+++||.++++-
T Consensus 248 ----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ----CHHHHHHHHHHccCCcEEEEEe
Confidence 1236788899999999976653
No 325
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.47 E-value=1.5 Score=39.40 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=56.5
Q ss_pred CCCCeEEEEcCCCC-hhHHHHHh-cCCceEEEecCCCCCCc--------EEEcCCCC-----------C--C--------
Q 028410 95 FNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL--------VSRADPHN-----------L--P-------- 143 (209)
Q Consensus 95 ~~~~~iLDiGcG~G-~~~~~la~-~~~~~v~~vD~s~~~~~--------~~~~d~~~-----------~--~-------- 143 (209)
.++.+++=+|+|.= ..+...+. .|. .|+.+|.++...+ ++..|..+ . +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 45789999999843 44444444 565 7999998876332 32333211 0 0
Q ss_pred CC--CCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 144 FF--DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 144 ~~--~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
++ -..+|+|++.-+..-. .|.-+.+++.+.+|||+.++-+..+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 11 2569999885433322 4555779999999999997755443
No 326
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=84.47 E-value=3.7 Score=33.63 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcCCCCh---h-HHHHHh-cCC-ceEEEecCCCC---CCcEEEcCCCCCCCCCCceeeEEcccc-------
Q 028410 94 LFNHSKVLCVSAGAGH---E-VMAFNS-IGV-ADVTGVELMDS---LPLVSRADPHNLPFFDEAFDVAFTAHL------- 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~---~-~~~la~-~~~-~~v~~vD~s~~---~~~~~~~d~~~~~~~~~~fD~i~~~~~------- 157 (209)
...+++||.+|+|+-. - +..|.+ .|. .-++-.|+.+- +-..+.+|..... ++.++|+|++.-.
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~-~~~k~DlIiSDmYd~~~k~~ 137 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYM-PPDKFDLIISDMYDGRTKNC 137 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEE-ESS-EEEEEE----TTS-SS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccC-CCCcccEEEEeccccccccc
Confidence 3678999999999753 2 223444 343 25555666543 3346777777765 3679999999521
Q ss_pred hhhh-CH----HHHHHHHHHhcccCcEEEEEEecCC-cccHHHHHHHhcccc
Q 028410 158 AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFRTSS 203 (209)
Q Consensus 158 ~~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~-~~~~~~~~~l~~~~~ 203 (209)
...- .. .-+..-+...|+-||.+.+=+-+.. +.+..++...|..+.
T Consensus 138 ~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt 189 (299)
T PF06460_consen 138 DGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWT 189 (299)
T ss_dssp -S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEE
T ss_pred ccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEE
Confidence 1111 12 3344566788889999888776643 356666666665443
No 327
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=83.82 E-value=0.81 Score=36.41 Aligned_cols=53 Identities=8% Similarity=-0.033 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhHHHHHh-c--CCceEEEecCCCCCCc
Q 028410 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS-I--GVADVTGVELMDSLPL 133 (209)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~-~--~~~~v~~vD~s~~~~~ 133 (209)
.++++++-+....-+.+..+.|-+||+|+....+.- . ....|+|.|+++++++
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~ 91 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALE 91 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHH
Confidence 445555544444447788999999999999887765 2 3468999999999664
No 328
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.77 E-value=3 Score=35.24 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc----------EEEcCCCCCCCC---CCceeeEEccc------
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHNLPFF---DEAFDVAFTAH------ 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~----------~~~~d~~~~~~~---~~~fD~i~~~~------ 156 (209)
...+++|+-||-|.....+.+.|+.-+.++|+++.++. ++..|+...... ...+|+++...
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 35689999999999998888888878999999998554 445555543321 12789999741
Q ss_pred c---hhhh-CH----HHHHHHHHHhcccCcEEEEEEecCC-----cccHHHHHHHhccccc
Q 028410 157 L---AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECA-----GREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~---~~~~-~~----~~~l~~~~r~LkpgG~lil~~~~~~-----~~~~~~~~~l~~~~~~ 204 (209)
+ -.-. |+ .--+.++.+.++| .+++..+..+ ...+..+.+-|+..|+
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY 140 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGY 140 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCC
Confidence 0 1111 33 2344666777788 5555555543 2356677777777776
No 329
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=83.32 E-value=6.2 Score=33.10 Aligned_cols=85 Identities=16% Similarity=0.060 Sum_probs=51.2
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCCCCCceeeEEcccchhhhC
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLPFFDEAFDVAFTAHLAEALF 162 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 162 (209)
..++++.+||=.|+| .|..+..+++ .|. +|++++.+++..+. ...|..+. ..+.+|+++-... .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--~~~~~d~~i~~~~----~ 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYDT--PPEPLDAAILFAP----A 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccccc--CcccceEEEECCC----c
Confidence 456889999999975 2334445555 465 78899888763331 11111111 1235776653211 1
Q ss_pred HHHHHHHHHHhcccCcEEEEEE
Q 028410 163 PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...+.+..+.|++||++++.-
T Consensus 234 -~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 -GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred -HHHHHHHHHhhCCCcEEEEEe
Confidence 246788889999999986653
No 330
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=83.17 E-value=2 Score=31.12 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=41.7
Q ss_pred CcEEEcCCCC-CCCCCCceeeEEcccchhhhCH----HHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 132 PLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 132 ~~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~~~----~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.+..+|+.+ ++--+..||+|+...+.-..+| .++++++.+.++|||. +++.+. ...++.-+..+||
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~--l~Tys~----a~~Vr~~L~~aGF 104 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGT--LATYSS----AGAVRRALQQAGF 104 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEE--EEES------BHHHHHHHHHCTE
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcE--EEEeec----hHHHHHHHHHcCC
Confidence 3466777654 3322478999998654433344 8899999999999998 555543 2347777777777
No 331
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.92 E-value=8.3 Score=30.31 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc----C-CceEEEecCCCCCC----------cEEEcCCCCCC-------CCCCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI----G-VADVTGVELMDSLP----------LVSRADPHNLP-------FFDEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~----~-~~~v~~vD~s~~~~----------~~~~~d~~~~~-------~~~~~fD~i 152 (209)
.++..|+++|.-.|..+...|.. | ..+|.++|++-... .+++++-.+.. ..++.--+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 46789999999999888887762 3 23899999886643 26677665532 122222333
Q ss_pred Ecccchhhh-CHHHHHHHHHHhcccCcEEEEEE
Q 028410 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+|-...|+. .....++-..+.|..|-++++--
T Consensus 148 vilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 148 VILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 333444544 45666777788888898866543
No 332
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=82.89 E-value=1.8 Score=38.18 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--C-CceEEEecCCCCCCcEEEcCC----------------CC--CCCC-CCceeeE
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--G-VADVTGVELMDSLPLVSRADP----------------HN--LPFF-DEAFDVA 152 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~-~~~v~~vD~s~~~~~~~~~d~----------------~~--~~~~-~~~fD~i 152 (209)
.....+.|+|.|.|.-...+... + ...++.||.+..|......+. .+ +|.. .+.||++
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 44577888988877655554441 2 457899999988665221111 11 3332 3559999
Q ss_pred Ecccchhhh-CH---HHHHHHHH-HhcccCcEEEEEEec
Q 028410 153 FTAHLAEAL-FP---SRFVGEME-RTVKIGGVCMVLMEE 186 (209)
Q Consensus 153 ~~~~~~~~~-~~---~~~l~~~~-r~LkpgG~lil~~~~ 186 (209)
++++..+++ .+ ....++.+ +..++||.++++-..
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999877766 32 34444444 556778887766554
No 333
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=82.77 E-value=3.5 Score=34.39 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=51.1
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~~ 154 (209)
...+++.+||-.|+| .|..+..+++ .|...+++++.++...+. ...+..+.. .+.+.+|+++.
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 345778899997764 2555566666 464478888765542211 111111111 12356898876
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..- ....+.+..+.|+++|+++..
T Consensus 243 ~~g-----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 243 AVG-----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred ccC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 311 124678888999999997754
No 334
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=82.59 E-value=3.4 Score=35.73 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS 130 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~ 130 (209)
.+-..+.|+|+|.|+.+..++- +|. .|.+||-|..
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~ 187 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQR 187 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchH
Confidence 5667899999999999999987 676 9999998865
No 335
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.91 E-value=2.4 Score=36.71 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=37.3
Q ss_pred EEEcCCCCC--CCCCCceeeEEcccchhhhCH---HHHHHHHHHhcccCcEEEEEE
Q 028410 134 VSRADPHNL--PFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~ 184 (209)
++.+++.+. ..+++++|.++..+...++++ .+.++++.+.++|||+++.=.
T Consensus 279 i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 279 IHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred EEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 444554442 246899999998877777744 778899999999999965543
No 336
>PLN02206 UDP-glucuronate decarboxylase
Probab=81.66 E-value=21 Score=31.50 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCC-------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.++++||=.| |+|..+.++.+ .|+ +|+++|.... ..+++.+|+.+..+ ..+|.|+..
T Consensus 117 ~~~~kILVTG-atGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l--~~~D~ViHl 190 (442)
T PLN02206 117 RKGLRVVVTG-GAGFVGSHLVDRLMARGD-SVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPIL--LEVDQIYHL 190 (442)
T ss_pred cCCCEEEEEC-cccHHHHHHHHHHHHCcC-EEEEEeCCCccchhhhhhhccCCceEEEECCccChhh--cCCCEEEEe
Confidence 4678999888 78999988876 365 8888874211 23456667655332 347888763
No 337
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.88 E-value=7.5 Score=33.89 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=55.1
Q ss_pred CeEEEEcCCCChhHHHHH----hcCCceEEEecCCCCCCcE--------EEcCCC---------------CCCCCCCcee
Q 028410 98 SKVLCVSAGAGHEVMAFN----SIGVADVTGVELMDSLPLV--------SRADPH---------------NLPFFDEAFD 150 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la----~~~~~~v~~vD~s~~~~~~--------~~~d~~---------------~~~~~~~~fD 150 (209)
.+|-=+|=| +.+..+| ..|+ +|+|+|+++..++- ..-+.. ..+-.-...|
T Consensus 10 ~~I~ViGLG--YVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d 86 (436)
T COG0677 10 ATIGVIGLG--YVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECD 86 (436)
T ss_pred eEEEEEccc--cccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCC
Confidence 566666554 6555554 3576 99999999985541 000000 0010012456
Q ss_pred eEEcc---cchhhh--C---HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 151 VAFTA---HLAEAL--F---PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 151 ~i~~~---~~~~~~--~---~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
+++.. .+..+. | .....+.+.++||+|-.+++-.........+...-+++.
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 65443 122212 2 377889999999998876665544444444444445554
No 338
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=79.70 E-value=13 Score=31.11 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCC--ChhHHHHHhcCCceEEEecCCCC------CCcEEE--cCCC-------CCCCCCCceeeEEcccch
Q 028410 96 NHSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDS------LPLVSR--ADPH-------NLPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 96 ~~~~iLDiGcG~--G~~~~~la~~~~~~v~~vD~s~~------~~~~~~--~d~~-------~~~~~~~~fD~i~~~~~~ 158 (209)
..++|+=+|+|. |.++..|++.|+ +|+.+..++. .+.... ++.. ..+-....+|+|+..-
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-- 80 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL-- 80 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe--
Confidence 346888888872 344555555565 7776665542 111110 1100 0111135789998732
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccccc
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSFT 205 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~~ 205 (209)
...+...++..+...+++++.++...+.. .....+.+.|...+++
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~--~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGL--GVEEQLREILPAEHLL 125 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCC--CcHHHHHHHCCCCcEE
Confidence 22234667788888899999866655543 3455566777665543
No 339
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=79.10 E-value=7.5 Score=31.28 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=51.6
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE--Ec------CCCCCCCCCCceeeEEcccchhhh
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS--RA------DPHNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~--~~------d~~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
..+.++.++|-.|+|. |..+..+++ .|..+|++++.+++..+.. .+ +..+.......+|+++....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG---- 168 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccC----
Confidence 4567888999988764 455555565 4653489988765433210 00 00000112346888875311
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+.+..+.++++|.++..-
T Consensus 169 -~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 -SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -ChHHHHHHHHHhcCCcEEEEEe
Confidence 1235678889999999987653
No 340
>PTZ00357 methyltransferase; Provisional
Probab=78.73 E-value=6.5 Score=36.85 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=55.1
Q ss_pred CeEEEEcCCCChhHHHHHh----cCC-ceEEEecCCCCC------------------------CcEEEcCCCCCCCCC--
Q 028410 98 SKVLCVSAGAGHEVMAFNS----IGV-ADVTGVELMDSL------------------------PLVSRADPHNLPFFD-- 146 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~----~~~-~~v~~vD~s~~~------------------------~~~~~~d~~~~~~~~-- 146 (209)
..|+=+|+|-|.+.....+ .+. -+|++||.|+.. ++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999977665533 232 389999999551 346778887764321
Q ss_pred ---------CceeeEEcccchhhh-C---HHHHHHHHHHhccc----CcE
Q 028410 147 ---------EAFDVAFTAHLAEAL-F---PSRFVGEMERTVKI----GGV 179 (209)
Q Consensus 147 ---------~~fD~i~~~~~~~~~-~---~~~~l~~~~r~Lkp----gG~ 179 (209)
+++|++++- ++..+ | -.++|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 379999983 22222 2 26788888888887 774
No 341
>PLN02740 Alcohol dehydrogenase-like
Probab=78.72 E-value=12 Score=32.05 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=51.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC---------CCCCCceeeE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL---------PFFDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~---------~~~~~~fD~i 152 (209)
...++++.+||=+|+|. |..+..+++ .|..+|+++|.+++..+. ...|..+. .+..+.+|++
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEE
Confidence 34568899999998751 233344454 465579999988764331 01111110 0112258888
Q ss_pred EcccchhhhCHHHHHHHHHHhcccC-cEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~ 183 (209)
+...- ....+.+..+.+++| |+++++
T Consensus 273 id~~G-----~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 273 FECAG-----NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred EECCC-----ChHHHHHHHHhhhcCCCEEEEE
Confidence 76221 234567777889897 987654
No 342
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=78.59 E-value=0.87 Score=38.01 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCCChhHH-HHHhcCCceEEEecCCCCCCc----------------EEEcCCCCCCCCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGAGHEVM-AFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~-~la~~~~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~i~~~~~ 157 (209)
-.+..|.|+=+|-|+++. .+-..|...|.++|.+|..++ ...+|-.. +-++...|-|...-+
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLGLl 271 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLGLL 271 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeeccc
Confidence 456899999999999999 666677889999999998665 22333333 334666776655322
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.. -++-.....++|||.|--++++.+
T Consensus 272 PS---se~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 272 PS---SEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred cc---cccchHHHHHHhhhcCCcEEEEec
Confidence 21 244445677889986654455443
No 343
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.52 E-value=15 Score=30.70 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=52.4
Q ss_pred hcccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCC---------CCCCCce
Q 028410 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNL---------PFFDEAF 149 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~---------~~~~~~f 149 (209)
....+.++.+||-.|+|. |..+..+++ .|...+++++.+++..+ ++..+-.+. ......+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGP 235 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence 345668889999887654 555555666 46534888876654221 111111110 1223458
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+++...- ....+.+..+.++++|+++..
T Consensus 236 d~vld~~g-----~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 236 DVVIECTG-----AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CEEEECCC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 98886321 123578889999999997754
No 344
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.05 E-value=7.2 Score=32.05 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=54.1
Q ss_pred eEEEEcCCCC--hhHHHHHhcCCceEEEecCCCCCCcEE--------EcCC------CCCCCCCCceeeEEcccchhhhC
Q 028410 99 KVLCVSAGAG--HEVMAFNSIGVADVTGVELMDSLPLVS--------RADP------HNLPFFDEAFDVAFTAHLAEALF 162 (209)
Q Consensus 99 ~iLDiGcG~G--~~~~~la~~~~~~v~~vD~s~~~~~~~--------~~d~------~~~~~~~~~fD~i~~~~~~~~~~ 162 (209)
+|.=+|+|.- .++..+++.|+ +|+.++.+++..+.+ .++. ..-+-....+|+|+..- ...+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~--k~~~ 78 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAV--KAYQ 78 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEec--cccc
Confidence 5777888632 23333444565 899998765433211 1110 00000125789888732 2224
Q ss_pred HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
...+++.+...+.++..++...+..+ ....+.+.+...
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~~nG~~--~~~~l~~~~~~~ 116 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFLQNGVG--HLEELAAYIGPE 116 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEecCCCC--cHHHHHHhcCcc
Confidence 57778888888888877666555433 334555655543
No 345
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.96 E-value=9.1 Score=26.49 Aligned_cols=80 Identities=13% Similarity=-0.004 Sum_probs=49.1
Q ss_pred CCCChhHHHHHhc---CCceEEEecCCCC--------CCcEEEcCCCCCC----CCCCceeeEEcccchhhhCHHHHHHH
Q 028410 105 AGAGHEVMAFNSI---GVADVTGVELMDS--------LPLVSRADPHNLP----FFDEAFDVAFTAHLAEALFPSRFVGE 169 (209)
Q Consensus 105 cG~G~~~~~la~~---~~~~v~~vD~s~~--------~~~~~~~d~~~~~----~~~~~fD~i~~~~~~~~~~~~~~l~~ 169 (209)
||.|..+..+++. +..+|+.+|.+++ ...++.+|..+.. ..-++.|.+++..-.. .....+..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--~~n~~~~~ 81 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD--EENLLIAL 81 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH--HHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH--HHHHHHHH
Confidence 5667899888772 3348999999976 3458899988743 2335788777732111 12233445
Q ss_pred HHHhcccCcEEEEEEec
Q 028410 170 MERTVKIGGVCMVLMEE 186 (209)
Q Consensus 170 ~~r~LkpgG~lil~~~~ 186 (209)
..|-+.|...++.....
T Consensus 82 ~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 82 LARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHTTTSEEEEEESS
T ss_pred HHHHHCCCCeEEEEECC
Confidence 56777788886655543
No 346
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=77.78 E-value=15 Score=29.96 Aligned_cols=38 Identities=5% Similarity=0.049 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----c--CCceEEEecCCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----I--GVADVTGVELMDSLP 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~--~~~~v~~vD~s~~~~ 132 (209)
+-+..|+|.||-.|..+..++. . ...++.+.|--+.+.
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P 116 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFP 116 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSS
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Confidence 5578999999999987766543 2 235799998665533
No 347
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.24 E-value=3.9 Score=35.47 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=30.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
.++++.+||-|.+|.......+.+.| ++|++||+|+..+
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P-~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGP-KRIHAVDLNPAQN 70 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCC-ceEEEEeCCHHHH
Confidence 55899999999877666666666665 5999999999833
No 348
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=76.31 E-value=20 Score=29.41 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cC-CceEEEecCCCCCCc----------------EEEcCCCC-CC-CCCCceee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IG-VADVTGVELMDSLPL----------------VSRADPHN-LP-FFDEAFDV 151 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~-~~~v~~vD~s~~~~~----------------~~~~d~~~-~~-~~~~~fD~ 151 (209)
......+|+|+|+..-+..+.. .+ ....+.+|++...+. -+.+|.+. +. .+...--+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 4588999999999988877755 22 258899999987432 23344332 11 12222222
Q ss_pred EE-cccchhhhCH---HHHHHHHHHhcccCcEEEEEEecC
Q 028410 152 AF-TAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 152 i~-~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
++ ......-+.| ..++..+...++||-.+++-+.-.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 22 2222222323 678899999999999998887653
No 349
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=76.23 E-value=11 Score=31.55 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=62.9
Q ss_pred CeEEEEcCC--CChhHHHHHhcCCceEEEecCCCC-------CCcEEEcCC--------CCCCCCCCceeeEEcccchhh
Q 028410 98 SKVLCVSAG--AGHEVMAFNSIGVADVTGVELMDS-------LPLVSRADP--------HNLPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 98 ~~iLDiGcG--~G~~~~~la~~~~~~v~~vD~s~~-------~~~~~~~d~--------~~~~~~~~~fD~i~~~~~~~~ 160 (209)
++|+=+|+| .|+++..|++.| ..|+.+-.++. .+.+...+- ...+.....+|+|+. ....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv--~vKa 77 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIV--TVKA 77 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEE--Eecc
Confidence 467788888 356667777777 46666655553 111111111 011122357999987 3333
Q ss_pred hCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
.+...++..+.+.++|...+++.-+..+..+ .+.+.+.+.
T Consensus 78 ~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~~ 117 (307)
T COG1893 78 YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPKE 117 (307)
T ss_pred ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCcc
Confidence 3678999999999999999888777766444 666666655
No 350
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.90 E-value=9 Score=31.21 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-----C-CCCceeeEEcccchh
Q 028410 95 FNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-----F-FDEAFDVAFTAHLAE 159 (209)
Q Consensus 95 ~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-----~-~~~~fD~i~~~~~~~ 159 (209)
.++.+||=+|+| -|..+..+++ .|..+|+++|.++...+. ...+..+.. . ....+|+++-..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~--- 195 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS--- 195 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC---
Confidence 578899988874 2333344455 476558888887653321 011111110 0 123578776521
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
-....+.+..+.++|+|+++..-
T Consensus 196 --G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 196 --GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred --CChHHHHHHHHHhcCCCEEEEec
Confidence 12346778899999999987654
No 351
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.21 E-value=3.4 Score=34.83 Aligned_cols=88 Identities=24% Similarity=0.251 Sum_probs=58.1
Q ss_pred CCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc-----------EEEcCCCCCCCCCCceeeEEcccchhhh-C
Q 028410 97 HSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL-----------VSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (209)
Q Consensus 97 ~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~-----------~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~ 162 (209)
+.+|.-+|.| -|..+..++- .| ++|+-+|+|...+. ....+..++.-.-.+.|+++..-+.--- .
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 4566777766 3555555555 34 59999999966443 3333333333334678999886544333 7
Q ss_pred HHHHHHHHHHhcccCcEEEEEEe
Q 028410 163 PSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
|.-..+++.+.+|||+.++=+.-
T Consensus 247 PkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 247 PKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ceehhHHHHHhcCCCcEEEEEEE
Confidence 88888999999999998765543
No 352
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=74.97 E-value=3.7 Score=31.92 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEecCCcc--cHHHHHHHhc
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFR 200 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~~~~~--~~~~~~~l~~ 200 (209)
.....+.++.|+|||||.+++.+...... ....+.+.++
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 35788999999999999988887765433 2344444444
No 353
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=74.91 E-value=6.4 Score=36.27 Aligned_cols=82 Identities=13% Similarity=-0.077 Sum_probs=50.5
Q ss_pred CeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc--------EEEcCCCCCC----CCCCceeeEEcccchhhh
Q 028410 98 SKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL--------VSRADPHNLP----FFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~--------~~~~d~~~~~----~~~~~fD~i~~~~~~~~~ 161 (209)
.+|+=+| .|..+..+++ .+. +++.+|.+++.++ ++.+|+.+.. ..-++.|++++..-..
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~-- 475 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-- 475 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCH--
Confidence 4555555 5588887776 355 8999999988543 7899988843 2235677777631111
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+....+-...|.+.|...++.-.
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe
Confidence 12223444566677887754433
No 354
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.41 E-value=8 Score=33.94 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=48.3
Q ss_pred CCCCCeEEEEcCCCChhHHHHH---h-cCCceEEEecCCCCCCcE------EEcCCCCCCCCCCceeeEEcccchhhhCH
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFN---S-IGVADVTGVELMDSLPLV------SRADPHNLPFFDEAFDVAFTAHLAEALFP 163 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la---~-~~~~~v~~vD~s~~~~~~------~~~d~~~~~~~~~~fD~i~~~~~~~~~~~ 163 (209)
.-++.+|+=+|+|. .+..++ + .|. +|+.+|.++...+. ...+..+. -..+|+|+...- .+
T Consensus 199 ~l~GktVvViG~G~--IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~~~~e~---v~~aDVVI~atG----~~ 268 (413)
T cd00401 199 MIAGKVAVVAGYGD--VGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVMTMEEA---VKEGDIFVTTTG----NK 268 (413)
T ss_pred CCCCCEEEEECCCH--HHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEccHHHH---HcCCCEEEECCC----CH
Confidence 46789999999984 444433 3 476 89999998764331 11111110 135788876321 22
Q ss_pred HHHHH-HHHHhcccCcEEEEEE
Q 028410 164 SRFVG-EMERTVKIGGVCMVLM 184 (209)
Q Consensus 164 ~~~l~-~~~r~LkpgG~lil~~ 184 (209)
..+. +..+.+|+||.++.+-
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeC
Confidence 3444 4588999999876554
No 355
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.30 E-value=14 Score=30.68 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=52.7
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC--------CCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~--------~~~~~fD~i~ 153 (209)
...+.++.+||-.|+|. |..+..+++ .|. +++++..+++..++. ..+..+.. .+...+|+++
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vl 232 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVI 232 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence 34567888999998763 566666776 465 788876555432210 11111111 1234588887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
...- ....+.++.+.|+++|.++..
T Consensus 233 d~~g-----~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 233 DATG-----NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred ECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 6321 134578889999999997754
No 356
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.27 E-value=12 Score=31.74 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=53.5
Q ss_pred cccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcEE--------EcCCC---CC-----CCCCCceee
Q 028410 91 KSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLVS--------RADPH---NL-----PFFDEAFDV 151 (209)
Q Consensus 91 ~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~~--------~~d~~---~~-----~~~~~~fD~ 151 (209)
...++++.+||=.|+ |.|..+..+++ .|. +|++++.+++..++. ..|.. +. ....+.+|+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 345688999999987 36677777777 575 788888765432211 11111 10 011235788
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
++..- . ...+.+..+.+++||+++++
T Consensus 232 v~d~v-G-----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 232 YFDNV-G-----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEECC-C-----HHHHHHHHHHhccCCEEEEE
Confidence 87521 1 23678889999999998765
No 357
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=74.15 E-value=10 Score=32.16 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=52.1
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-------CCCCceeeEEcc
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAFTA 155 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~i~~~ 155 (209)
..+.++.+||-.|+|. |..+..+++ .|...++++|.++...+. ...+..+.. .....+|+++..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 4557788999887643 455555565 576579999887653221 011111111 113457888753
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.- ....+.++.+.++++|.++..-
T Consensus 262 ~g-----~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 262 TG-----VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CC-----CcHHHHHHHHHhccCCEEEEeC
Confidence 11 1245788899999999977653
No 358
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=73.94 E-value=11 Score=31.22 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=52.3
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcEEE-------cCCCCCCC---CCCceeeEEcccchh
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLVSR-------ADPHNLPF---FDEAFDVAFTAHLAE 159 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~~~-------~d~~~~~~---~~~~fD~i~~~~~~~ 159 (209)
..+.++.+||-.|+| .|..+..+++ .|. +|++++.++...+... .+...... ..+.+|+++..-.
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~-- 234 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV-- 234 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC--
Confidence 345788899999886 5555555555 465 7888887765432110 01111000 1245888876311
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+.+..+.|+++|.++.+.
T Consensus 235 ---~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---cHHHHHHHHHhcccCCEEEEEC
Confidence 1345678889999999987664
No 359
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=73.72 E-value=8.6 Score=33.67 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEcccchhhhCH
Q 028410 94 LFNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFP 163 (209)
Q Consensus 94 ~~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~ 163 (209)
.-.+.+|+=+|+|. .+..++. .|. +|+++|.++.... +...+..+. -...|++++.. ..
T Consensus 192 ~l~Gk~VvViG~G~--IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~v~~leea---l~~aDVVItaT-----G~ 260 (406)
T TIGR00936 192 LIAGKTVVVAGYGW--CGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFRVMTMEEA---AKIGDIFITAT-----GN 260 (406)
T ss_pred CCCcCEEEEECCCH--HHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCEeCCHHHH---HhcCCEEEECC-----CC
Confidence 35788999999884 5554444 465 8999988875321 111111111 13468887631 12
Q ss_pred HHHH-HHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 164 SRFV-GEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 164 ~~~l-~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
..++ .+....+|+|+.++..-..........+.+...
T Consensus 261 ~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~ 298 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAV 298 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHh
Confidence 3344 357888999998655544433355666665443
No 360
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.66 E-value=26 Score=29.03 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=52.5
Q ss_pred cccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCC-CCC-----CCCCCceeeE
Q 028410 91 KSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADP-HNL-----PFFDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~-~~~-----~~~~~~fD~i 152 (209)
...++++.+||=.|+ |.|..+..+++ .|. ++++++.+++..+ ++..+- ... ....+.+|++
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEE
Confidence 345688999998884 46677777777 465 7888877654322 111111 011 0112458888
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+..- . ...+.+..+.+++||+++..
T Consensus 212 ~d~~-G-----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 212 FDNV-G-----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EECC-C-----HHHHHHHHHHhCcCcEEEEe
Confidence 7521 1 12457889999999998765
No 361
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=73.15 E-value=4.3 Score=33.68 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCChhHHHHHhcC-CceEEEecCCCCCCc---------------EEEcCCCCCCCC---CCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL---------------VSRADPHNLPFF---DEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~-~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~---~~~fD~i~~~~ 156 (209)
.+..|+-+| -.-..+.+++--+ ..+|..+|+++..++ ...-|..+ |+| .++||+.+...
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCc
Confidence 466799998 5555666655421 248999999988554 33334333 333 37899998742
Q ss_pred chhhhCHHHHHHHHHHhcccC---cEEEEEEecCCcccHHHHHH-Hhcccccc
Q 028410 157 LAEALFPSRFVGEMERTVKIG---GVCMVLMEECAGREIKQIVE-LFRTSSFT 205 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~Lkpg---G~lil~~~~~~~~~~~~~~~-l~~~~~~~ 205 (209)
....--...++..-...||.- |++-+...++..+...++.. +.+..||+
T Consensus 230 peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 230 PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 211112355666667777765 89888888888888888888 66666663
No 362
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=72.67 E-value=67 Score=28.30 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCC-------------CCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
+++++||=.| |+|..+.++.+ .|+ +|+++|.... .++++.+|+.+..+ ..+|+|+..
T Consensus 118 ~~~mkILVTG-atGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~--~~~D~ViHl 191 (436)
T PLN02166 118 RKRLRIVVTG-GAGFVGSHLVDKLIGRGD-EVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPIL--LEVDQIYHL 191 (436)
T ss_pred cCCCEEEEEC-CccHHHHHHHHHHHHCCC-EEEEEeCCCCccHhHhhhhccCCceEEEECccccccc--cCCCEEEEC
Confidence 6778999998 78999988876 365 8999985321 13355566654322 358988764
No 363
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=72.65 E-value=14 Score=30.74 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=49.5
Q ss_pred cCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC------CC-CCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL------PF-FDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~------~~-~~~~fD~i~~~~ 156 (209)
.+.++.+||=.|+| .|..+..+++ .|..+|+++|.+++..+. ...|..+. .. ....+|+++...
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 45778899999764 1233334444 476449999887653321 11111111 01 123688887521
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
- ....+.+..+.|+++|++++.-
T Consensus 240 g-----~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 240 G-----NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred C-----CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 2334567788999999987653
No 364
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.60 E-value=18 Score=30.68 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc-E-------EEcCCCC---CCCCCCceeeEEcccchhh
Q 028410 94 LFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL-V-------SRADPHN---LPFFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 94 ~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~-~-------~~~d~~~---~~~~~~~fD~i~~~~~~~~ 160 (209)
.+++.+||-.|+| -|..+..+++ .|. ++++++.++.... . ...+..+ +.-..+.+|+++-..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~---- 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV---- 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC----
Confidence 4678888888875 2344444555 465 7777776654221 0 0001111 000012477776521
Q ss_pred hCHHHHHHHHHHhcccCcEEEEE
Q 028410 161 LFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
.....+.+..+.+++||+++.+
T Consensus 256 -g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 -SAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -CCHHHHHHHHHHhcCCcEEEEe
Confidence 1233577888999999998765
No 365
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=72.41 E-value=7.7 Score=32.39 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=50.3
Q ss_pred cCCCC--CeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcEE--------EcCCCCCC-------CCCCceeeE
Q 028410 93 LLFNH--SKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLVS--------RADPHNLP-------FFDEAFDVA 152 (209)
Q Consensus 93 ~~~~~--~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~~--------~~d~~~~~-------~~~~~fD~i 152 (209)
.++++ .+||=.|+ |.|..+..+++ .|..+|++++.+++..+.. ..+..+.. ..++.+|++
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 34554 88988885 45667777777 5654788888775422211 11111111 112468888
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+..- . . ..+.+..+.|+++|+++.+
T Consensus 229 id~~-g----~-~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 229 FDNV-G----G-EISDTVISQMNENSHIILC 253 (345)
T ss_pred EECC-C----c-HHHHHHHHHhccCCEEEEE
Confidence 7521 1 1 1257788999999998765
No 366
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.23 E-value=14 Score=30.99 Aligned_cols=87 Identities=15% Similarity=0.039 Sum_probs=51.3
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~~ 154 (209)
..++++.+||-.|+| .|..+..+++ .|...++++|.+++..+. ...+..+.. .....+|+++.
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 456788899998765 2344444555 476578898877642221 111111111 12245888875
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..- ....+.+..+.|+++|+++..
T Consensus 242 ~~g-----~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 242 AGG-----GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCC-----CHHHHHHHHHHhhcCCEEEEe
Confidence 211 134678899999999997654
No 367
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=71.57 E-value=7.6 Score=32.38 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=51.7
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCC------CC-CCCceeeEEcc
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNL------PF-FDEAFDVAFTA 155 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~------~~-~~~~fD~i~~~ 155 (209)
..+.++.+||-.|+|. |..+..+++ .|...+++++.++...++. ..+..+. .. +...+|+++..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 3457888999998654 555555666 4664488887665422210 1111110 11 22348888763
Q ss_pred cchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
. .....+..+.+.|+++|+++.+.
T Consensus 235 ~-----g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 235 A-----GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred C-----CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1 12346788899999999976653
No 368
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.56 E-value=11 Score=32.03 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=51.8
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCC--CC-------CCCCceeeE
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHN--LP-------FFDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~--~~-------~~~~~fD~i 152 (209)
...++++.+||=.|+|. |..+..+++ .|..+|+++|.+++..+.. ..|..+ .+ ..++.+|++
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEE
Confidence 34568899999998752 344455565 4655799999877633210 111111 00 112257777
Q ss_pred EcccchhhhCHHHHHHHHHHhcccC-cEEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~~ 184 (209)
+-..- ....+.+..+.+++| |+++++-
T Consensus 260 id~~G-----~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 260 FECIG-----NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred EECCC-----CHHHHHHHHHHhhcCCCeEEEEe
Confidence 65211 134567778899886 9876654
No 369
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=71.47 E-value=6 Score=33.08 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=30.2
Q ss_pred chhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 157 ~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
|...+ ....+|..+...|+|||+++++...+ -+-+.++..|+
T Consensus 208 VN~El~~L~~~L~~~~~~L~~gGrl~visfHS--lEDriVK~~f~ 250 (296)
T PRK00050 208 VNDELEELERALEAALDLLKPGGRLAVISFHS--LEDRIVKRFFR 250 (296)
T ss_pred HHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc--HHHHHHHHHHH
Confidence 44444 46889999999999999999988875 23444555554
No 370
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=71.18 E-value=17 Score=30.77 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc-EEEcCCCCCCCCCCceeeEEcccchhhhCHHHHHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL-VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEM 170 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~-~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~ 170 (209)
.+.+|.=+|+| ..+..+++ .|. +|+++|.++.... +.. -..++.---...|+|+.+--........+..+.
T Consensus 145 ~g~~VgIIG~G--~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~~~-~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~ 220 (330)
T PRK12480 145 KNMTVAIIGTG--RIGAATAKIYAGFGA-TITAYDAYPNKDLDFLT-YKDSVKEAIKDADIISLHVPANKESYHLFDKAM 220 (330)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEeCChhHhhhhhh-ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence 45688888887 55555544 465 9999998865321 110 001111112456887764211100112334677
Q ss_pred HHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 171 ~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+|||..+ +.+.-..--....+.+.++.-++
T Consensus 221 l~~mk~gavl-IN~aRG~~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 221 FDHVKKGAIL-VNAARGAVINTPDLIAAVNDGTL 253 (330)
T ss_pred HhcCCCCcEE-EEcCCccccCHHHHHHHHHcCCe
Confidence 7888887754 44433334455566666654433
No 371
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=71.01 E-value=5.2 Score=30.93 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=47.1
Q ss_pred eEEEEcCCCChhHHHH----HhcCCceEEEecCCCCCCcEEEcCC------------------CCCCCC------CCcee
Q 028410 99 KVLCVSAGAGHEVMAF----NSIGVADVTGVELMDSLPLVSRADP------------------HNLPFF------DEAFD 150 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~l----a~~~~~~v~~vD~s~~~~~~~~~d~------------------~~~~~~------~~~fD 150 (209)
+|-=+|.| +.+..+ ++.|+ +|+|+|++++.++.+.... .++.+. -...|
T Consensus 2 ~I~ViGlG--yvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 2 KIAVIGLG--YVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp EEEEE--S--TTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred EEEEECCC--cchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 45556555 555444 44687 9999999988443111110 111110 13456
Q ss_pred eEEcc-c--chh--h--h-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 151 VAFTA-H--LAE--A--L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 151 ~i~~~-~--~~~--~--~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
+++.+ . ... . + ....++.++.+.+++|-.+++-...+.......+..++++
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 66553 1 111 1 1 2478889999999996554333333333333344445543
No 372
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.79 E-value=17 Score=30.43 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=48.7
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-------CCCCcee-eEEc
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFD-VAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD-~i~~ 154 (209)
....++.+||=.|+|+ |..+..+++ .|...|++++.+++..+. ...|..+.. .....+| +++-
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 3457788999998642 233344444 466457888877653321 011111110 1123566 5543
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
. .--...+.+..+.+++||+++++
T Consensus 236 ~-----~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 236 T-----AGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred C-----CCCHHHHHHHHHHhhcCCEEEEE
Confidence 1 11234678888999999997766
No 373
>PLN02827 Alcohol dehydrogenase-like
Probab=70.03 E-value=9.8 Score=32.62 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=49.2
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC--C-------CCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL--P-------FFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~--~-------~~~~~fD~i~ 153 (209)
..+.++.+||-.|+|+ |..+..+++ .|...|+++|.++...++ ...+..+. + ...+.+|+++
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4568899999998642 233333444 476568899877653221 01111110 0 1122578876
Q ss_pred cccchhhhCHHHHHHHHHHhcccC-cEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~ 183 (209)
-..- ....+.+..+.+++| |+++++
T Consensus 269 d~~G-----~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 269 ECVG-----DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred ECCC-----ChHHHHHHHHhhccCCCEEEEE
Confidence 5211 123567788889998 998654
No 374
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=69.73 E-value=6.1 Score=31.97 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCCCChhHHHHH--hcCCceEEEecCCCCCCc------------------EEEcCCCC----CCCCCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFN--SIGVADVTGVELMDSLPL------------------VSRADPHN----LPFFDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la--~~~~~~v~~vD~s~~~~~------------------~~~~d~~~----~~~~~~~fD 150 (209)
+++.++||||.|....=..+. ++|+ +.+|.|+++..++ ..+.|-.. +--.++.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 577899999998764433332 3576 8999999987443 11222211 112368899
Q ss_pred eEEcccc
Q 028410 151 VAFTAHL 157 (209)
Q Consensus 151 ~i~~~~~ 157 (209)
+..|+--
T Consensus 156 ~tlCNPP 162 (292)
T COG3129 156 ATLCNPP 162 (292)
T ss_pred eEecCCC
Confidence 9999843
No 375
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=68.53 E-value=23 Score=30.06 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=50.5
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCC---------CCCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNL---------PFFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~---------~~~~~~fD~i~ 153 (209)
..++++.+||=.|+| -|..+..+++ .|..+|+++|.+++..+.. ..|..+. ...++.+|+|+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 261 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTF 261 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEE
Confidence 456889999999864 2233344455 4655799998876533210 1111111 01123578887
Q ss_pred cccchhhhCHHHHHHHHHHhcccC-cEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~ 183 (209)
-.. .....+.+..+.++++ |+++..
T Consensus 262 d~~-----g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 262 ECI-----GNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred ECC-----CChHHHHHHHHhhccCCCeEEEE
Confidence 621 1134677788899997 987765
No 376
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=68.32 E-value=1.4 Score=38.45 Aligned_cols=46 Identities=22% Similarity=0.081 Sum_probs=38.7
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCcEEEcCC
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADP 139 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~ 139 (209)
..+++..|-|+-||-|.++..++..+. .|++-|.++++++++..++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni 291 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANI 291 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhc
Confidence 348999999999999999999998774 9999999999777544443
No 377
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=67.96 E-value=46 Score=27.30 Aligned_cols=86 Identities=17% Similarity=0.079 Sum_probs=51.8
Q ss_pred cccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCC-----CCCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNL-----PFFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~-----~~~~~~fD~i~ 153 (209)
...++++.+||=.|+ |.|..+..+++ .|. +|++++.+++..+ ++..+-.+. ....+.+|+++
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEE
Confidence 345678899998874 45566666676 565 7888876654222 111111111 01124588887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
..- . ...+.+..+.++++|+++..
T Consensus 217 d~~--g----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 217 DNV--G----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ECC--C----HHHHHHHHHhhccCCEEEEE
Confidence 521 1 24568889999999998654
No 378
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=67.29 E-value=29 Score=29.38 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=50.4
Q ss_pred cccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCC--C-------CCCCceeeE
Q 028410 91 KSLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNL--P-------FFDEAFDVA 152 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~--~-------~~~~~fD~i 152 (209)
...++++.+||=.|+| .|..+..+++ .|..+|+++|.++...++. ..+..+. + .....+|++
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~v 258 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYS 258 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEE
Confidence 3456888999998764 2233344455 4655799998876533210 1111110 0 112458888
Q ss_pred EcccchhhhCHHHHHHHHHHhcccC-cEEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~~ 184 (209)
+...- ....+.+..+.++++ |.++.+-
T Consensus 259 id~~g-----~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 259 FECTG-----NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred EECCC-----ChHHHHHHHHhcccCCCEEEEEc
Confidence 75211 134577788899886 9876654
No 379
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=66.91 E-value=64 Score=27.09 Aligned_cols=85 Identities=18% Similarity=0.072 Sum_probs=48.5
Q ss_pred cCCCCCeEEEEcCCCChhHHH---HHh-cCCceEEEecCCCCCCcE-------EEcCCCCCCC-----------CCCcee
Q 028410 93 LLFNHSKVLCVSAGAGHEVMA---FNS-IGVADVTGVELMDSLPLV-------SRADPHNLPF-----------FDEAFD 150 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~---la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~-----------~~~~fD 150 (209)
...++.+||=.|+ |..+.. +++ .|.++|++++.+++..++ ...+..+..+ ....+|
T Consensus 174 ~~~~g~~vlI~g~--g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 174 PVGAGDTVVVQGA--GPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3457888888875 455544 444 465588888876542211 0111111111 124588
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+++...- ....+.+..+.++++|+++..-
T Consensus 252 ~vid~~g-----~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 252 VVIEASG-----HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEEECCC-----ChHHHHHHHHHhccCCEEEEEc
Confidence 8875311 1235677889999999987553
No 380
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=66.51 E-value=9.1 Score=31.81 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=51.5
Q ss_pred eEEEEcCCCChhHHHHH----hcCCceEEEecCCCCCCcEEEc-------CCCCCCCCCCceeeEEcccchhhhCHHHHH
Q 028410 99 KVLCVSAGAGHEVMAFN----SIGVADVTGVELMDSLPLVSRA-------DPHNLPFFDEAFDVAFTAHLAEALFPSRFV 167 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la----~~~~~~v~~vD~s~~~~~~~~~-------d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l 167 (209)
+|-=||+| ..+..++ +.|+ +|++.|.+++..+-... +..++.-.....|+|+..--.. ....++
T Consensus 2 ~Ig~IGlG--~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~--~~~~v~ 76 (298)
T TIGR00872 2 QLGLIGLG--RMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG--IVDAVL 76 (298)
T ss_pred EEEEEcch--HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch--HHHHHH
Confidence 45567776 4444444 4565 89999998764431111 1111100012458887742111 245667
Q ss_pred HHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 168 GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 168 ~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
.++...+++|-. ++..............+.+...+
T Consensus 77 ~~l~~~l~~g~i-vid~st~~~~~t~~~~~~~~~~g 111 (298)
T TIGR00872 77 EELAPTLEKGDI-VIDGGNSYYKDSLRRYKLLKEKG 111 (298)
T ss_pred HHHHhhCCCCCE-EEECCCCCcccHHHHHHHHHhcC
Confidence 788888888754 44444433344555555554443
No 381
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=66.21 E-value=11 Score=31.79 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=49.8
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC----------C-CCCcee-
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP----------F-FDEAFD- 150 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~----------~-~~~~fD- 150 (209)
..++++.+||=.|+|+ |..+..+++ .|. +|+++|.++...++. ..+..+.+ + ....+|
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCC
Confidence 4567899999999854 555555666 465 789998876533210 11111110 0 112233
Q ss_pred ---eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 151 ---VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 151 ---~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+++-. .-....+....+.|++||+++++-
T Consensus 241 ~~d~v~d~-----~g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 241 TGWKIFEC-----SGSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CcCEEEEC-----CCChHHHHHHHHHHhcCCeEEEEC
Confidence 44421 112345677788999999987653
No 382
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.08 E-value=3.9 Score=34.42 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=62.2
Q ss_pred EEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc---------EEEcCCCCCCCC-CCceeeEEcc---------cchhh
Q 028410 100 VLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFF-DEAFDVAFTA---------HLAEA 160 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~---------~~~~d~~~~~~~-~~~fD~i~~~---------~~~~~ 160 (209)
|+|+-||.|.....+.+.|+..+.++|+++...+ +..+|+.++... -..+|+++.. .-...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~~ 80 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRKG 80 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccCC
Confidence 5899999999999888888867788999876443 446677665421 1358999874 00011
Q ss_pred h-CHH-HHHHHHH---HhcccCcEEEEEEecCC------cccHHHHHHHhccccc
Q 028410 161 L-FPS-RFVGEME---RTVKIGGVCMVLMEECA------GREIKQIVELFRTSSF 204 (209)
Q Consensus 161 ~-~~~-~~l~~~~---r~LkpgG~lil~~~~~~------~~~~~~~~~l~~~~~~ 204 (209)
. ++. .++.++. +.++|. +++..+..+ ...+..+.+.|+..|+
T Consensus 81 ~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY 133 (315)
T TIGR00675 81 FEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGY 133 (315)
T ss_pred CCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCC
Confidence 1 332 3444444 445775 334444432 2346667777776665
No 383
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=65.69 E-value=54 Score=26.49 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=33.4
Q ss_pred hcccCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
+.+..-.+.-|.+||.|+|..+..+.+.+..+...+++++..+
T Consensus 44 K~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFi 86 (326)
T KOG0821|consen 44 KKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFI 86 (326)
T ss_pred HhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccC
Confidence 3334456788999999999999999987767777888777643
No 384
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=64.73 E-value=15 Score=31.67 Aligned_cols=47 Identities=15% Similarity=-0.016 Sum_probs=33.0
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhHHHHHhc---------CCceEEEecCCCC
Q 028410 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI---------GVADVTGVELMDS 130 (209)
Q Consensus 84 ~~~~l~~~~~~~~~~~iLDiGcG~G~~~~~la~~---------~~~~v~~vD~s~~ 130 (209)
++-.++.......+..++++|+|+|.++..+.+. ...++.-||+|++
T Consensus 65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 3333333333355678999999999998887651 1358999999997
No 385
>PLN02494 adenosylhomocysteinase
Probab=63.43 E-value=19 Score=32.17 Aligned_cols=94 Identities=9% Similarity=-0.031 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCC-c-----EEEcCCCCCCCCCCceeeEEcccchhhhCHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLP-L-----VSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~-~-----~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
-.+.+|+=+|+| ..+..+++ .|. +|+.+|.++... . +...+..+. -...|++++..- ...
T Consensus 252 LaGKtVvViGyG--~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv~leEa---l~~ADVVI~tTG----t~~ 321 (477)
T PLN02494 252 IAGKVAVICGYG--DVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVLTLEDV---VSEADIFVTTTG----NKD 321 (477)
T ss_pred cCCCEEEEECCC--HHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeeccHHHH---HhhCCEEEECCC----Ccc
Confidence 568899999888 66666655 365 899999887532 1 111111110 135788887311 122
Q ss_pred HHHHHHHHhcccCcEEEEEEecCCcccHHHHHHH
Q 028410 165 RFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (209)
Q Consensus 165 ~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l 198 (209)
-+..+..+.+|+||.++-+-...+......+.+.
T Consensus 322 vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 322 IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 2337788899999997666553445566666655
No 386
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=63.34 E-value=29 Score=28.88 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEEcccc
Q 028410 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAFTAHL 157 (209)
Q Consensus 95 ~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~~~~~ 157 (209)
.++.+|+-.|+|. |..+..+++ .|...++.++.+++..++ ...+..+.+ .....+|+++....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC
Confidence 4677888877653 445555565 465467777765542211 111222111 12346788876221
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+..+.+.|+++|.++..-
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 242 -----APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred -----CHHHHHHHHHHHhcCCEEEEEe
Confidence 1345778889999999987764
No 387
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=63.21 E-value=25 Score=29.27 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=51.8
Q ss_pred cccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCc----------EEE-cCCCCC-----CCCCCceee
Q 028410 91 KSLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPL----------VSR-ADPHNL-----PFFDEAFDV 151 (209)
Q Consensus 91 ~~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~----------~~~-~d~~~~-----~~~~~~fD~ 151 (209)
...++++.+||=.|+ |.|..+..+++ .|. ++++++.+++..+ ++. .+-.+. ....+.+|+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 345688999999986 45566666676 576 7888776654222 111 000010 011246888
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
++..- . ...+.+..+.|+++|.++..
T Consensus 225 v~d~~-g-----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 225 YFDNV-G-----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEECC-C-----HHHHHHHHHHhccCcEEEEe
Confidence 87521 1 24577889999999998754
No 388
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=62.92 E-value=82 Score=25.80 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=51.5
Q ss_pred eEEEEcCCCC--hhHHHHHhcCCceEEEecCCCCCC--------cEEEc--C-------CCCCCCCCCceeeEEcccchh
Q 028410 99 KVLCVSAGAG--HEVMAFNSIGVADVTGVELMDSLP--------LVSRA--D-------PHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 99 ~iLDiGcG~G--~~~~~la~~~~~~v~~vD~s~~~~--------~~~~~--d-------~~~~~~~~~~fD~i~~~~~~~ 159 (209)
+|+=+|+|.- .++..|++.|+ +|+.++. ++.+ ..... + ..+..-....+|+++..- .
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav--k 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV--K 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe--c
Confidence 5777877743 23344455565 7888877 3211 11111 0 001111125689887632 1
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
..+...+++++...++++..++...... .....+.+.|...
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~ii~~~nG~--~~~~~l~~~~~~~ 118 (305)
T PRK12921 78 AYQLDAAIPDLKPLVGEDTVIIPLQNGI--GQLEQLEPYFGRE 118 (305)
T ss_pred ccCHHHHHHHHHhhcCCCCEEEEeeCCC--ChHHHHHHhCCcc
Confidence 1245777888888888877655554433 2344556666543
No 389
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=62.22 E-value=17 Score=27.25 Aligned_cols=47 Identities=11% Similarity=-0.054 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-cCCceEEEecCCCC--------CCcEEEcCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS--------LPLVSRADPHN 141 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~vD~s~~--------~~~~~~~d~~~ 141 (209)
.-..-|||+|=|.|+.=.+|.+ .+..+|+.+|-.-. .-.+++||+.+
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 4468999999999999999999 56679999986433 22377888765
No 390
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=62.04 E-value=38 Score=29.07 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=53.0
Q ss_pred ccCCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCC-C-----CCCCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPH-N-----LPFFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~-~-----~~~~~~~fD~i~~ 154 (209)
...+++.++.-+|||. |..+..-+. .|...++++|+++...+ ++...-. + ....++-.|..|-
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e 260 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE 260 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE
Confidence 3558899999999984 444444444 57889999999998544 2211100 0 0011223344322
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..-..+.++...+.+.++|..+++-
T Consensus 261 -----~~G~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 261 -----CVGNVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred -----ccCCHHHHHHHHHHHhcCCeEEEEe
Confidence 1212347788888888899987763
No 391
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=61.85 E-value=65 Score=27.15 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred cccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~ 153 (209)
...+.++.+||-.|+| .|..+..+++ .|...|++++.++...++ ...+..... .+...+|+++
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEE
Confidence 3456788899988764 3445555555 466458888766542221 011111111 1235688887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...- ....+.+..+.|+++|+++..-
T Consensus 257 d~~~-----~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 257 EAVG-----RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EcCC-----ChHHHHHHHHHhhcCCeEEEEe
Confidence 5211 1345788899999999987653
No 392
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=61.69 E-value=16 Score=33.88 Aligned_cols=80 Identities=14% Similarity=-0.027 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCC--------cEEEcCCCCCC----CCCCceeeEEcccchhh
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLP--------LVSRADPHNLP----FFDEAFDVAFTAHLAEA 160 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~--------~~~~~d~~~~~----~~~~~fD~i~~~~~~~~ 160 (209)
..+|+=+|+| ..+..+++ .+. +++.+|.+++.+ .++.+|..+.. ..-++.|++++..-..
T Consensus 400 ~~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~- 475 (621)
T PRK03562 400 QPRVIIAGFG--RFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP- 475 (621)
T ss_pred cCcEEEEecC--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH-
Confidence 4577777766 77777665 354 899999998844 37899998853 2235677777632111
Q ss_pred hCHHHHHHHHHHhcccCcEEE
Q 028410 161 LFPSRFVGEMERTVKIGGVCM 181 (209)
Q Consensus 161 ~~~~~~l~~~~r~LkpgG~li 181 (209)
+....+....|.+.|+-.++
T Consensus 476 -~~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 476 -QTSLQLVELVKEHFPHLQII 495 (621)
T ss_pred -HHHHHHHHHHHHhCCCCeEE
Confidence 12223344556667776643
No 393
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.29 E-value=53 Score=25.48 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCC-------------CCcEEEcCCCCCC-----C-----CCCc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS-------------LPLVSRADPHNLP-----F-----FDEA 148 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~-------------~~~~~~~d~~~~~-----~-----~~~~ 148 (209)
++.+||-.|++ |..+..+++ .|. +|++++.+++ .+.++.+|+.+.. + .-+.
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 35688999975 555555554 466 8888887654 2345677776532 0 0134
Q ss_pred eeeEEcccchhh---h---------------CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 149 FDVAFTAHLAEA---L---------------FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 149 fD~i~~~~~~~~---~---------------~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+|.++.+.-... . -+..+++.+.+.++++|.++++...
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 677776421110 0 1223456666777888887776543
No 394
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=59.89 E-value=37 Score=24.67 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=45.6
Q ss_pred CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC---CcccHHHHHHHhcccccc
Q 028410 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIVELFRTSSFT 205 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~---~~~~~~~~~~l~~~~~~~ 205 (209)
++..|+|+..+-..-.+....|-.+.+.|..+|.++++++.. +.-+...+.+.-...|++
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~ 105 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLV 105 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCe
Confidence 567889888655554578888999999999999999999765 344666677777666663
No 395
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=59.82 E-value=49 Score=27.97 Aligned_cols=86 Identities=20% Similarity=0.151 Sum_probs=49.6
Q ss_pred ccCCCCCeEEEEcCCCChhHHH---HHh-cCCceEEEecCCCCCCcEE-------EcCCCC----C-----CCCCCceee
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMA---FNS-IGVADVTGVELMDSLPLVS-------RADPHN----L-----PFFDEAFDV 151 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~---la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~----~-----~~~~~~fD~ 151 (209)
..++++.+||=.|+ |..+.. +++ .|..+|+++|.+++..+.. ..+... . ....+.+|+
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~ 260 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDY 260 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCE
Confidence 45688999999986 455444 444 4655799998876533210 111111 0 011235777
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccC-cEEEEEE
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~~ 184 (209)
++-.. -....+....+.+++| |+++++-
T Consensus 261 vid~~-----G~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 261 SFECT-----GNIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred EEECC-----CChHHHHHHHHHhhcCCCEEEEEC
Confidence 76521 1234567778889996 8876653
No 396
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.77 E-value=23 Score=32.27 Aligned_cols=82 Identities=9% Similarity=-0.023 Sum_probs=48.3
Q ss_pred CeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCC--------cEEEcCCCCCC----CCCCceeeEEcccchhhh
Q 028410 98 SKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLP--------LVSRADPHNLP----FFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~--------~~~~~d~~~~~----~~~~~fD~i~~~~~~~~~ 161 (209)
.+++=+||| ..+..+++ .+. +++.+|.+++.+ .++.+|..+.. ..-++.|.++..--..
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~-- 492 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG-- 492 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh--
Confidence 456666655 78887776 354 899999998744 37899988742 2335778665521111
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+....+-...|...|+..++.-.
T Consensus 493 ~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 493 YEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEE
Confidence 11112333345567777654433
No 397
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.69 E-value=19 Score=30.62 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=48.0
Q ss_pred CeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc-----------------------------------EEEcC
Q 028410 98 SKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL-----------------------------------VSRAD 138 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~-----------------------------------~~~~d 138 (209)
.+||-+|+| ..+-++.+ .|+.++..+|++...+. ....+
T Consensus 41 ~kiLviGAG--GLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k 118 (422)
T KOG2015|consen 41 CKILVIGAG--GLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK 118 (422)
T ss_pred CcEEEEccC--cccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence 789999887 44444433 48888888887755221 33455
Q ss_pred CCCCCC-CCCceeeEEcccchhhhCHHHHHHHHHHhcccCc
Q 028410 139 PHNLPF-FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178 (209)
Q Consensus 139 ~~~~~~-~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG 178 (209)
+++.|. --..||+|+|. ...+.++..+..|.-.++--|
T Consensus 119 Iqd~~~~FYk~F~~iicG--LDsIeaRRwIN~mL~~l~~~g 157 (422)
T KOG2015|consen 119 IQDKPISFYKRFDLIICG--LDSIEARRWINGMLVRLKLEG 157 (422)
T ss_pred hhcCCHHHHhhhceEEec--ccchhHHHHHHHHHHHHHhcc
Confidence 555541 13679999993 333446777777765555444
No 398
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=59.43 E-value=16 Score=18.57 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028410 6 EALLRKISYGAITIATF 22 (209)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (209)
..||||+.+..++++.+
T Consensus 4 ~~mmKkil~~l~a~~~L 20 (25)
T PF08139_consen 4 LSMMKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36889988886665543
No 399
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=58.17 E-value=57 Score=28.21 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=51.0
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc------EEEcCCC---CCC------CCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL------VSRADPH---NLP------FFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~------~~~~d~~---~~~------~~~~~fD~i~~ 154 (209)
..+.++.+||=.|+| .|..+..+++ .|...++.+|.++...+ ....+.. +.. .....+|+++-
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 345778888877664 2233344455 47656777777663221 0011111 100 12245888876
Q ss_pred ccchh---------hhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAE---------ALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~---------~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
..-.. ..++...+.+..+.+++||+++++-
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 31110 0123467899999999999987753
No 400
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=57.92 E-value=37 Score=28.29 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEEccc
Q 028410 94 LFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAFTAH 156 (209)
Q Consensus 94 ~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~~~~ 156 (209)
..++.+|+-.|+| .|..+..+++ .|...|++++-++...+. ...+..... .+...+|+++...
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 4677888887654 2344444555 465348887655432110 011111111 1235688887632
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
. ....+.++.+.|+++|+++..-
T Consensus 239 g-----~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 239 G-----APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred C-----CHHHHHHHHHhhcCCCEEEEEc
Confidence 1 1345778899999999976653
No 401
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.77 E-value=64 Score=26.93 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=50.0
Q ss_pred cccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcEE-------EcCCCCCC--------CCCCceeeEE
Q 028410 91 KSLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLVS-------RADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~--------~~~~~fD~i~ 153 (209)
...+.++.+||=.|+| .|..+..+++ .|...|++++.+++..+.. ..|..+.. .+.+.+|+++
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 3456778888888753 2233333444 4655788887765532210 11222111 1123488887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
...- ....+.+..+.|++||.++.+-
T Consensus 247 d~~g-----~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 247 DCAG-----VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred ECCC-----CHHHHHHHHHhccCCCEEEEEc
Confidence 5321 1335778899999999976653
No 402
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.77 E-value=48 Score=27.61 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=46.8
Q ss_pred CCCCCeEEEEcCCC-ChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCCC-----CCCCceeeEEcccc
Q 028410 94 LFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP-----FFDEAFDVAFTAHL 157 (209)
Q Consensus 94 ~~~~~~iLDiGcG~-G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~~-----~~~~~fD~i~~~~~ 157 (209)
..++.+||-.|+|. |..+..+++ .|...+++++-+++..+ ++..+-.+.. .+.+.+|+++...-
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g 240 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG 240 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC
Confidence 36778888877642 445555555 46446777765443211 1111111110 12346888876321
Q ss_pred hhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 158 ~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
......++.+.|+++|.++..
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 241 -----NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred -----CHHHHHHHHHHhccCCEEEEE
Confidence 123467788999999998765
No 403
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.59 E-value=34 Score=29.61 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=30.6
Q ss_pred HHHHHhcccC-CCCCeEEEEcCCCChhHHHHHh-cCCceEEE---ecCCCC
Q 028410 85 FKHLQGKSLL-FNHSKVLCVSAGAGHEVMAFNS-IGVADVTG---VELMDS 130 (209)
Q Consensus 85 ~~~l~~~~~~-~~~~~iLDiGcG~G~~~~~la~-~~~~~v~~---vD~s~~ 130 (209)
+..+.....+ .++....++|||-|.++.+++. .+..+++- +|-...
T Consensus 170 lg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~ 220 (420)
T KOG2811|consen 170 LGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSS 220 (420)
T ss_pred HhHHHhccccCCCcceEEEecCCchHHHHHHHHHhccccEEEEEeecccch
Confidence 3333333333 3448999999999999999988 45555555 665443
No 404
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=57.38 E-value=63 Score=27.24 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=48.7
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCCCC------CCCCCceeeEEc
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNL------PFFDEAFDVAFT 154 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~~~------~~~~~~fD~i~~ 154 (209)
..+.++.+||-.|+| .|..+..+++ .|...+++++.++...+ ++..+-.+. ..++..+|+++.
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld 262 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVE 262 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEE
Confidence 344677888876553 3334444454 46644888876654322 111111111 012456888876
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
. +. ....+.+..+.|+++|.++...
T Consensus 263 ~-vg----~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 263 A-LG----KPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred e-CC----CHHHHHHHHHHHhcCCEEEEEc
Confidence 2 11 1135788899999999977653
No 405
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=57.38 E-value=91 Score=26.21 Aligned_cols=104 Identities=9% Similarity=-0.022 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc-EEE-cCCCCCCCCCCceeeEEcccchhhhCHHHHH-H
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL-VSR-ADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-G 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~-~~~-~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l-~ 168 (209)
.+.+|.=+|.| ..+..+++ .|. +|+++|.+..... +.. ....++.---...|+|+.+--.. -....++ .
T Consensus 135 ~g~tvgIvG~G--~IG~~vA~~l~afG~-~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt-~~T~~li~~ 210 (312)
T PRK15469 135 EDFTIGILGAG--VLGSKVAQSLQTWGF-PLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNT-PETVGIINQ 210 (312)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCC-EEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCC-HHHHHHhHH
Confidence 46788888776 55555554 466 8999998765432 111 11111110113568887631110 0122233 5
Q ss_pred HHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 169 EMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+....+|||..+ +-+.-..--....+.+.++.-.+
T Consensus 211 ~~l~~mk~ga~l-IN~aRG~vVde~aL~~aL~~g~i 245 (312)
T PRK15469 211 QLLEQLPDGAYL-LNLARGVHVVEDDLLAALDSGKV 245 (312)
T ss_pred HHHhcCCCCcEE-EECCCccccCHHHHHHHHhcCCe
Confidence 677889998754 33333334456666666665544
No 406
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=57.23 E-value=42 Score=28.33 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=55.1
Q ss_pred HHhcccCCCCCeEEEEcCCC--ChhHHHHHh-cCCceEEEecCCCCCCc-------EEEcCCCCCC-------C-CCCce
Q 028410 88 LQGKSLLFNHSKVLCVSAGA--GHEVMAFNS-IGVADVTGVELMDSLPL-------VSRADPHNLP-------F-FDEAF 149 (209)
Q Consensus 88 l~~~~~~~~~~~iLDiGcG~--G~~~~~la~-~~~~~v~~vD~s~~~~~-------~~~~d~~~~~-------~-~~~~f 149 (209)
+.....++++.+||=.|+.. |.++.++++ .|. .++++--+++..+ -...+..+-. + ....+
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 33345678899999998544 477777887 565 5444444443221 1111111111 1 22368
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecC
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
|+|+... -...+.+..+.|++||+++.+-...
T Consensus 213 Dvv~D~v------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 213 DVVLDTV------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred eEEEECC------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 9988732 2345667889999999988776554
No 407
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=56.74 E-value=45 Score=29.21 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=51.6
Q ss_pred CeEEEEcCCCC--hhHHHHHhcCCceEEEecCCCCCCcEEEcCCC------------------CCC--CCCCceeeEEcc
Q 028410 98 SKVLCVSAGAG--HEVMAFNSIGVADVTGVELMDSLPLVSRADPH------------------NLP--FFDEAFDVAFTA 155 (209)
Q Consensus 98 ~~iLDiGcG~G--~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~------------------~~~--~~~~~fD~i~~~ 155 (209)
.+|.=+|.|.- ..+..+++.|+ +|+++|+++..++-+..... .+. ...+..|+|+.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 46777777633 23333445676 99999999885542111000 000 011246888764
Q ss_pred -cch------hhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 156 -HLA------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 156 -~~~------~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
... ..+ .....++.+.+.+++|..+ +..+.......+.+...+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iV-I~~STv~pgtt~~~~~~l 133 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLV-ILESTSPVGATEQMAEWL 133 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEE-EEeCCCCCCHHHHHHHHH
Confidence 111 011 2355667888889887654 443333334444454433
No 408
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=56.72 E-value=23 Score=30.60 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----c----CCceEEEecCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----I----GVADVTGVELM 128 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~----~~~~v~~vD~s 128 (209)
.+...|+|+|.|.|.....|.+ . +.-+||||+..
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP 150 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence 5778999999999976665544 2 34589999983
No 409
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=56.58 E-value=33 Score=30.32 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc------EEEcCCCCCCCCCCceeeEEcccchhhhCHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~ 164 (209)
-.+.+|+=+|+| ..+..++. .|. +|+.+|.++.... +...+..+. -...|+++... ...
T Consensus 210 l~Gk~VlViG~G--~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~v~~l~ea---l~~aDVVI~aT-----G~~ 278 (425)
T PRK05476 210 IAGKVVVVAGYG--DVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFRVMTMEEA---AELGDIFVTAT-----GNK 278 (425)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCEecCHHHH---HhCCCEEEECC-----CCH
Confidence 478899999987 56665554 465 8999998875432 111111111 13578887732 123
Q ss_pred HHH-HHHHHhcccCcEEEEEEecCCcccHHHHHH
Q 028410 165 RFV-GEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (209)
Q Consensus 165 ~~l-~~~~r~LkpgG~lil~~~~~~~~~~~~~~~ 197 (209)
.++ .+..+.+|+|+.++..-..........+.+
T Consensus 279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 345 478889999998655544334445555544
No 410
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=55.33 E-value=16 Score=28.14 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=25.6
Q ss_pred CceeeEEcccchhhhC-----HHHHHHHHHHhcccCcEEEEEEec
Q 028410 147 EAFDVAFTAHLAEALF-----PSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~-----~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+.||+|+..++....- ....++.+.+..+.||-++++-..
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~ 110 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIGGP 110 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-ST
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEeCh
Confidence 6899999986654333 577788888888888887666544
No 411
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=55.31 E-value=82 Score=26.75 Aligned_cols=92 Identities=17% Similarity=0.072 Sum_probs=51.6
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE------EEcCCCCCC-------CCCCceeeEEccc
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV------SRADPHNLP-------FFDEAFDVAFTAH 156 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~------~~~d~~~~~-------~~~~~fD~i~~~~ 156 (209)
..+.++.+||-.|+| .|..+..+++ .|...++++|.++...+. ...+..+.. +..+.+|+++...
T Consensus 172 ~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~~~d~v~d~~ 251 (375)
T cd08282 172 AGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPGGVDRAVDCV 251 (375)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCCCCCEEEECC
Confidence 455778888887775 2344444455 465478888876542211 111222110 1224588887631
Q ss_pred chhh------hCHHHHHHHHHHhcccCcEEEEE
Q 028410 157 LAEA------LFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 157 ~~~~------~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
-... .+....+.+..+.++++|.++..
T Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 252 GYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 1110 12345688899999999997543
No 412
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=55.09 E-value=10 Score=31.55 Aligned_cols=85 Identities=15% Similarity=0.016 Sum_probs=45.9
Q ss_pred eEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEEEcC---------------C---CCCCCCCCceeeEEccc
Q 028410 99 KVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVSRAD---------------P---HNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~~~d---------------~---~~~~~~~~~fD~i~~~~ 156 (209)
+|.=+|+| ..+..++. .|+ +|+.+|.++...+.+..+ + .+..-.....|+|+..-
T Consensus 3 kI~iiG~G--~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 3 KIAVLGAG--SWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 56677765 55555544 465 889999876533211110 0 00000013568887642
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
-.. ....++.++...++++..++-+....+
T Consensus 80 ~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 80 PSQ--ALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CHH--HHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 221 346667778888888776555543433
No 413
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=54.03 E-value=20 Score=29.39 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=41.1
Q ss_pred eEEEEcCCC--ChhHHHHHhcCCceEEEecCCCCCCcEE--Ec--C-C-CCCCCCCCceeeEEcccchhhhCHHHHHHHH
Q 028410 99 KVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVS--RA--D-P-HNLPFFDEAFDVAFTAHLAEALFPSRFVGEM 170 (209)
Q Consensus 99 ~iLDiGcG~--G~~~~~la~~~~~~v~~vD~s~~~~~~~--~~--d-~-~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~ 170 (209)
+|.=||+|. |.++..+.+.|+ +|+++|.++...+.. .+ + . .+.. .-...|+|+..--.. ...++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~~~~~~-~~~~aDlVilavp~~--~~~~~~~~l 77 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEASTDLS-LLKDCDLVILALPIG--LLLPPSEQL 77 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccccCCHh-HhcCCCEEEEcCCHH--HHHHHHHHH
Confidence 466677663 334444444565 899999987643311 00 0 0 1111 124578887742211 124556777
Q ss_pred HHhcccCcE
Q 028410 171 ERTVKIGGV 179 (209)
Q Consensus 171 ~r~LkpgG~ 179 (209)
...++|+..
T Consensus 78 ~~~l~~~~i 86 (279)
T PRK07417 78 IPALPPEAI 86 (279)
T ss_pred HHhCCCCcE
Confidence 777777644
No 414
>PRK06701 short chain dehydrogenase; Provisional
Probab=53.53 E-value=54 Score=26.83 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCChhHHHHH----hcCCceEEEecCCCC---------------CCcEEEcCCCCCC-----CC-----C
Q 028410 96 NHSKVLCVSAGAGHEVMAFN----SIGVADVTGVELMDS---------------LPLVSRADPHNLP-----FF-----D 146 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la----~~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~-----~~-----~ 146 (209)
++.++|-.|++. ..+..++ +.|. +|+.++.++. .+.++..|+.+.. +. -
T Consensus 45 ~~k~iLItGasg-gIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDS-GIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356888888654 4455544 4565 7888776542 1235677776532 10 1
Q ss_pred CceeeEEcccch----hh------------h-----CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 147 EAFDVAFTAHLA----EA------------L-----FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 147 ~~fD~i~~~~~~----~~------------~-----~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+.+|+++.+.-. .. + -+..+++.+.+.++++|.++++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 367888764210 00 0 123455666676778888776654
No 415
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=53.19 E-value=1e+02 Score=25.70 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=47.7
Q ss_pred cCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC-------CCCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~i~~~~ 156 (209)
.+.++.+||-.|+| .|..+..+++ .|...|+.++.++...+. ...+..+.. ...+.+|+++...
T Consensus 172 ~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 172 PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECC
Confidence 33567888888753 2333344444 466578888766542211 111111111 1112577877521
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
- ....+.+..+.|+++|.++.+
T Consensus 252 g-----~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 252 N-----NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred C-----CHHHHHHHHHHhhcCCeEEEE
Confidence 1 134578899999999998754
No 416
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=53.13 E-value=26 Score=29.14 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=43.6
Q ss_pred CeEEEEcCCC--ChhHHHHHhcCC-ceEEEecCCCCCCcEEE-cC-----CCCCCCCCCceeeEEcccchhhhCHHHHHH
Q 028410 98 SKVLCVSAGA--GHEVMAFNSIGV-ADVTGVELMDSLPLVSR-AD-----PHNLPFFDEAFDVAFTAHLAEALFPSRFVG 168 (209)
Q Consensus 98 ~~iLDiGcG~--G~~~~~la~~~~-~~v~~vD~s~~~~~~~~-~d-----~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~ 168 (209)
.+|.=||+|. +..+..+.+.|. .+|+++|.+++..+... .. ..+..-.-...|+|+..--.. ....++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~--~~~~v~~ 84 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG--ASGAVAA 84 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH--HHHHHHH
Confidence 5788888774 223333333443 38999999876332110 00 011110124578887743221 1345667
Q ss_pred HHHHhcccCcEEE
Q 028410 169 EMERTVKIGGVCM 181 (209)
Q Consensus 169 ~~~r~LkpgG~li 181 (209)
++...+++|+.++
T Consensus 85 ~l~~~l~~~~iv~ 97 (307)
T PRK07502 85 EIAPHLKPGAIVT 97 (307)
T ss_pred HHHhhCCCCCEEE
Confidence 7777888887543
No 417
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=52.90 E-value=1.2e+02 Score=25.08 Aligned_cols=85 Identities=18% Similarity=0.040 Sum_probs=48.4
Q ss_pred ccCCCCCeEEEEcCCCChhHHH---HHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMA---FNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVA 152 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~---la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i 152 (209)
..+.++.+||=.|+ |..+.. +++ .|..+++++|.++..... ...+..... .+...+|++
T Consensus 162 ~~~~~g~~vlI~g~--g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (345)
T cd08286 162 GKVKPGDTVAIVGA--GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVV 239 (345)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEE
Confidence 34577788877765 455444 444 463478888876543211 001111110 123468888
Q ss_pred EcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+..- .....+..+.+.|+++|.++..
T Consensus 240 ld~~-----g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 240 IEAV-----GIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred EECC-----CCHHHHHHHHHhccCCcEEEEe
Confidence 7532 1233578888999999997754
No 418
>PRK06487 glycerate dehydrogenase; Provisional
Probab=52.90 E-value=51 Score=27.73 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHH-HHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEM 170 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l-~~~ 170 (209)
.+.+|.=+|.| ..+..+++ .|. +|+++|.+........ ..+.---..-|+|+.+- .-.-....++ .+.
T Consensus 147 ~gktvgIiG~G--~IG~~vA~~l~~fgm-~V~~~~~~~~~~~~~~---~~l~ell~~sDiv~l~l-Plt~~T~~li~~~~ 219 (317)
T PRK06487 147 EGKTLGLLGHG--ELGGAVARLAEAFGM-RVLIGQLPGRPARPDR---LPLDELLPQVDALTLHC-PLTEHTRHLIGARE 219 (317)
T ss_pred CCCEEEEECCC--HHHHHHHHHHhhCCC-EEEEECCCCCcccccc---cCHHHHHHhCCEEEECC-CCChHHhcCcCHHH
Confidence 45688888876 66666665 355 8999997643211111 11110014568877631 0000111122 456
Q ss_pred HHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 171 ~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+|||.++ +-+.-..--....+.+.++.-++
T Consensus 220 ~~~mk~ga~l-IN~aRG~vVde~AL~~AL~~g~i 252 (317)
T PRK06487 220 LALMKPGALL-INTARGGLVDEQALADALRSGHL 252 (317)
T ss_pred HhcCCCCeEE-EECCCccccCHHHHHHHHHcCCe
Confidence 6777887764 33333334455666666665443
No 419
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.63 E-value=1.1e+02 Score=23.85 Aligned_cols=93 Identities=14% Similarity=0.005 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCCChhHHHHHhc--CCceEEEecCCCC----CCcEEEcCCCC-CCCC---CCceeeEEcccchhhh-CH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHN-LPFF---DEAFDVAFTAHLAEAL-FP 163 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~----~~~~~~~d~~~-~~~~---~~~fD~i~~~~~~~~~-~~ 163 (209)
..+.+|..|.|-+=+.-....++ |..+|+-.+.+.. .-+|+.-|... ..+| .+.||+|+...-+-.. -.
T Consensus 72 ~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl 151 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYGTEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECL 151 (217)
T ss_pred ccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhccceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhh
Confidence 67789999999875533333332 6668888887655 23466666544 2233 3679999985211111 23
Q ss_pred HHHHHHHHHhcccCcEEEEEEecC
Q 028410 164 SRFVGEMERTVKIGGVCMVLMEEC 187 (209)
Q Consensus 164 ~~~l~~~~r~LkpgG~lil~~~~~ 187 (209)
.+.-..+.++.|++-++++++++.
T Consensus 152 ~Kts~tik~L~r~~~kvilCtGei 175 (217)
T KOG3350|consen 152 AKTSETIKRLQRNQKKVILCTGEI 175 (217)
T ss_pred hhhHHHHHHHhcCCceEEEechhH
Confidence 555567788888889999998874
No 420
>PRK13243 glyoxylate reductase; Reviewed
Probab=52.38 E-value=31 Score=29.22 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEEEcCC--CCCCCCCCceeeEEcccchhhhCHHHHH-H
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVSRADP--HNLPFFDEAFDVAFTAHLAEALFPSRFV-G 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~~~d~--~~~~~~~~~fD~i~~~~~~~~~~~~~~l-~ 168 (209)
.+.+|.=+|.| ..+..+++ .|. +|.++|.++.......... .++.---...|+|+.+--.. -....++ .
T Consensus 149 ~gktvgIiG~G--~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t-~~T~~~i~~ 224 (333)
T PRK13243 149 YGKTIGIIGFG--RIGQAVARRAKGFGM-RILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLT-KETYHMINE 224 (333)
T ss_pred CCCEEEEECcC--HHHHHHHHHHHHCCC-EEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCC-hHHhhccCH
Confidence 46788889886 66665555 465 8999998764321101011 11110013568887741110 0112222 4
Q ss_pred HHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 169 EMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+....+|||..++ -+....--..+.+.+.++.-.+
T Consensus 225 ~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 225 ERLKLMKPTAILV-NTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred HHHhcCCCCeEEE-ECcCchhcCHHHHHHHHHcCCe
Confidence 6777788887643 3333334456666666665443
No 421
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=51.72 E-value=5.9 Score=27.19 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=12.3
Q ss_pred EEEEcCCCChhHHHHHh
Q 028410 100 VLCVSAGAGHEVMAFNS 116 (209)
Q Consensus 100 iLDiGcG~G~~~~~la~ 116 (209)
=+|||||.|....+-..
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 37999999977655433
No 422
>PRK07806 short chain dehydrogenase; Provisional
Probab=51.65 E-value=1.1e+02 Score=23.91 Aligned_cols=87 Identities=8% Similarity=-0.058 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCC---------------CCcEEEcCCCCCC-----CC-----CC
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS---------------LPLVSRADPHNLP-----FF-----DE 147 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~---------------~~~~~~~d~~~~~-----~~-----~~ 147 (209)
+.++|-.|++ |..+..+++ .|+ +|++++.+.. .+.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 5678888864 455555554 465 7888766532 1235677777632 00 13
Q ss_pred ceeeEEccc-chhh--------h-----CHHHHHHHHHHhcccCcEEEEEEe
Q 028410 148 AFDVAFTAH-LAEA--------L-----FPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 148 ~fD~i~~~~-~~~~--------~-----~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
.+|+++.+. .... . -+..+++.+.+.++.+|.++++..
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 578877542 1100 0 134566777777777788776644
No 423
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=51.41 E-value=22 Score=29.89 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~ 132 (209)
..+.+|.-+|+|.-....+++..|. +|..||+++.-+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahi 98 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHI 98 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHH
Confidence 7789999999997778888888775 999999999833
No 424
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=51.04 E-value=37 Score=28.27 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcE------EEcCCCCCCCCCCceeeEEcccchhhhCHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLV------SRADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~------~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~ 165 (209)
.+.+++=+|.| ..+..++. .|. +|+.+|.++...+. ...+..++.-.-..+|+|+..- . ..-
T Consensus 151 ~g~kvlViG~G--~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~-p----~~~ 222 (296)
T PRK08306 151 HGSNVLVLGFG--RTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI-P----ALV 222 (296)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC-C----hhh
Confidence 57899999986 45555544 465 99999998653221 1111111111124689998842 1 122
Q ss_pred HHHHHHHhcccCcEEEEEEecCCc
Q 028410 166 FVGEMERTVKIGGVCMVLMEECAG 189 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~~~~~~ 189 (209)
+-+++.+.++||+.++-+...++.
T Consensus 223 i~~~~l~~~~~g~vIIDla~~pgg 246 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLASKPGG 246 (296)
T ss_pred hhHHHHHcCCCCcEEEEEccCCCC
Confidence 335677889999987766555543
No 425
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=50.50 E-value=31 Score=25.89 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC------CCcEEEcCCC-CCCCCCCceeeEEcccchhhhCHHHHHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------LPLVSRADPH-NLPFFDEAFDVAFTAHLAEALFPSRFVG 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~------~~~~~~~d~~-~~~~~~~~fD~i~~~~~~~~~~~~~~l~ 168 (209)
.+.+||=+|.=...+...+..... ++.....+-. .-.-+...+. +.+ ....||.++...-=.--...-.|.
T Consensus 12 ~~k~vL~~g~~~D~~~~~L~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~D~vvly~PKaK~e~~~lL~ 89 (155)
T PF08468_consen 12 EGKSVLFAGDPQDDLPAQLPAIAV-SVHVFSYHHWYALQKQAQSNVQFHFGAELP-ADQDFDTVVLYWPKAKAEAQYLLA 89 (155)
T ss_dssp TT-EEEEEE---SSHHHHS--SEE-EEEESBHHHHHHHHHHHGGGEEE-SS--HH-HHTT-SEEEEE--SSHHHHHHHHH
T ss_pred CCCeEEEEcCCchhhHHHhhhcCC-EEEEEEchHHHHHhHhcccCceEeeeccCC-cccCCCEEEEEccCcHHHHHHHHH
Confidence 456677777666666666664322 4444321100 0000111111 111 135699998732111002344678
Q ss_pred HHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 169 EMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
.+...|++||.++++-... ...++..+.+..+
T Consensus 90 ~l~~~L~~g~~i~vVGEnk--~GIkSa~K~L~~~ 121 (155)
T PF08468_consen 90 NLLSHLPPGTEIFVVGENK--GGIKSAEKQLAPY 121 (155)
T ss_dssp HHHTTS-TT-EEEEEEEGG--GTGGGHHHHHTTT
T ss_pred HHHHhCCCCCEEEEEecCc--ccHHHHHHHHHhh
Confidence 8889999999987765442 2344445544433
No 426
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=50.34 E-value=42 Score=28.45 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecC-CCCCCcEEEcC--CCCCCCCCCceeeEEcccchhhhCHHHHH-H
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVEL-MDSLPLVSRAD--PHNLPFFDEAFDVAFTAHLAEALFPSRFV-G 168 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~-s~~~~~~~~~d--~~~~~~~~~~fD~i~~~~~~~~~~~~~~l-~ 168 (209)
+.++-=+|.| ..+..+++ .|. +|.+.|+ ++....-..+- ..++.---.+-|+++++ +.-.-+...++ .
T Consensus 142 gkTvGIiG~G--~IG~~va~~l~afgm-~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh-~PlT~eT~g~i~~ 217 (324)
T COG0111 142 GKTVGIIGLG--RIGRAVAKRLKAFGM-KVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLH-LPLTPETRGLINA 217 (324)
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCC-eEEEECCCCchhhhccccceecccHHHHHhhCCEEEEc-CCCCcchhcccCH
Confidence 6678788765 88888876 365 9999999 33322211000 11111112457777763 11101123333 4
Q ss_pred HHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 169 EMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+....+|||.. ++-+.-..--....+.+.++.-.+
T Consensus 218 ~~~a~MK~gai-lIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 218 EELAKMKPGAI-LINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred HHHhhCCCCeE-EEECCCcceecHHHHHHHHHcCCc
Confidence 55677888773 344443344456666666655433
No 427
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=50.31 E-value=77 Score=26.82 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=43.7
Q ss_pred eEEEEcCCCChhHHHHHh----cCCceEEEecCCCC-------C--CcEEEcCCCCCC-----CCCCceeeEEcc----c
Q 028410 99 KVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS-------L--PLVSRADPHNLP-----FFDEAFDVAFTA----H 156 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~-------~--~~~~~~d~~~~~-----~~~~~fD~i~~~----~ 156 (209)
+||=.| |.|+.+-+... .|+ +|+.+|.-.. . ..|.++|+.+-. |...++|.|+.. .
T Consensus 2 ~iLVtG-GAGYIGSHtv~~Ll~~G~-~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~ 79 (329)
T COG1087 2 KVLVTG-GAGYIGSHTVRQLLKTGH-EVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASIS 79 (329)
T ss_pred eEEEec-CcchhHHHHHHHHHHCCC-eEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccc
Confidence 466555 78887766543 476 8999985443 2 468899998833 567889999875 3
Q ss_pred chhhh-CHHH
Q 028410 157 LAEAL-FPSR 165 (209)
Q Consensus 157 ~~~~~-~~~~ 165 (209)
+.+.. +|.+
T Consensus 80 VgESv~~Pl~ 89 (329)
T COG1087 80 VGESVQNPLK 89 (329)
T ss_pred cchhhhCHHH
Confidence 44544 5533
No 428
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=50.30 E-value=1.2e+02 Score=24.29 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=49.0
Q ss_pred ccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE---------EEcCCCCCC------CCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV---------SRADPHNLP------FFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~---------~~~d~~~~~------~~~~~fD~i~ 153 (209)
..+.++..|+-.|| +.|..+..+++ .|. +++.++.++...++ +..+..+.. .+...+|+++
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 45678899999998 24445555555 465 68888776543221 111111100 1224588887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.- ...+....+.++++|.++.+.
T Consensus 214 ~~~g------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPVG------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECcc------HHHHHHHHHhhccCCEEEEEc
Confidence 6321 134566788899999976653
No 429
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=50.06 E-value=61 Score=26.55 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=50.2
Q ss_pred cccCCCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEE-------EcCCCCCCCCCCceeeEEcccchh
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVS-------RADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~-------~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...+.++.+||=.|+ |..+..+.+ .|. ++++++.+++..++. ..+..+. ...+.+|+++...
T Consensus 150 ~~~~~~g~~vlV~g~--g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~vid~~--- 222 (319)
T cd08242 150 QVPITPGDKVAVLGD--GKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEAE-SEGGGFDVVVEAT--- 222 (319)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCcccc-ccCCCCCEEEECC---
Confidence 345678889998875 556655543 465 688887765533211 1111111 2345688887631
Q ss_pred hhCHHHHHHHHHHhcccCcEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMV 182 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil 182 (209)
.....+....+.|+++|.++.
T Consensus 223 --g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 223 --GSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred --CChHHHHHHHHHhhcCCEEEE
Confidence 113456778889999999876
No 430
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=50.03 E-value=1.2e+02 Score=23.43 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=33.6
Q ss_pred CeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc--EEEcCCCC-C-------------CCCCCceeeEEcc
Q 028410 98 SKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL--VSRADPHN-L-------------PFFDEAFDVAFTA 155 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~--~~~~d~~~-~-------------~~~~~~fD~i~~~ 155 (209)
.+|+-.| |.|.++.+..+ +++ -|..+|++++.-. -+..|..+ + .+..++.|.|+|.
T Consensus 4 grVivYG-GkGALGSacv~~Fkanny-wV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CV 79 (236)
T KOG4022|consen 4 GRVIVYG-GKGALGSACVEFFKANNY-WVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCV 79 (236)
T ss_pred ceEEEEc-CcchHhHHHHHHHHhcCe-EEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccccceEEEe
Confidence 4566665 77777766654 344 7888898876322 22222221 1 2456899999994
No 431
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=50.00 E-value=49 Score=24.85 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=27.7
Q ss_pred EEEcCCCCCCCC-CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEe
Q 028410 134 VSRADPHNLPFF-DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (209)
Q Consensus 134 ~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~ 185 (209)
+..+|-...+.+ .+.+|++++.+ + ..+......|||||.+++-..
T Consensus 42 vris~~~~~~~~~~~~~Dilv~l~------~-~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 42 VRISDEPIIPSPPVGEADILVALD------P-EALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp EEEESS--SSSS-TSSESEEEESS------H-HHHHHCGTTCETTEEEEEETT
T ss_pred EEEecCcCccCcccCCCCEEEEcC------H-HHHHHHhcCcCcCeEEEEECC
Confidence 445553133333 48999999832 3 334477788999999665543
No 432
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.23 E-value=14 Score=30.50 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=50.6
Q ss_pred eEEEEcCCCChhHHHH----HhcCCceEEEecCCCCCCcEEE-------------cCC---------------CCCCCCC
Q 028410 99 KVLCVSAGAGHEVMAF----NSIGVADVTGVELMDSLPLVSR-------------ADP---------------HNLPFFD 146 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~l----a~~~~~~v~~vD~s~~~~~~~~-------------~d~---------------~~~~~~~ 146 (209)
+|.=||+| ..+..+ ++.|+ +|+.+|.+++.++-.. +.+ .++.-.-
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 56667776 444444 44566 8999999977543210 011 1111112
Q ss_pred CceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 147 EAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
...|+|+.+ +.... -...++.++.+.++|+..++...+. .....+.+.+.
T Consensus 80 ~~aD~Vi~a-vpe~~~~k~~~~~~l~~~~~~~~il~~~tSt---~~~~~l~~~~~ 130 (288)
T PRK09260 80 ADADLVIEA-VPEKLELKKAVFETADAHAPAECYIATNTST---MSPTEIASFTK 130 (288)
T ss_pred cCCCEEEEe-ccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcC
Confidence 456888763 22222 2356778888888887754333333 23344545444
No 433
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=48.58 E-value=90 Score=26.37 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=49.8
Q ss_pred hcccCCCCCeEEEEcCCCChhHHH---HHh-cCCceEEEecCCCCCCcE-------EEcCCCCC--C-------CCCCce
Q 028410 90 GKSLLFNHSKVLCVSAGAGHEVMA---FNS-IGVADVTGVELMDSLPLV-------SRADPHNL--P-------FFDEAF 149 (209)
Q Consensus 90 ~~~~~~~~~~iLDiGcG~G~~~~~---la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~--~-------~~~~~f 149 (209)
....+.++.+||=.|+ |..+.. +++ .|...+++++.++...+. ...+..+. . ...+.+
T Consensus 177 ~~~~~~~g~~vlI~g~--g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 177 NTAKVTPGSTCAVFGL--GGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred hccCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCC
Confidence 3445678888888876 444444 444 466568888866542211 00111111 1 112458
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcc-cCcEEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVK-IGGVCMVLM 184 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~Lk-pgG~lil~~ 184 (209)
|+++... . ....+.+..+.++ ++|.++..-
T Consensus 255 d~vid~~-g----~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 255 DYAFEVI-G----SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred cEEEECC-C----CHHHHHHHHHHhccCCCEEEEEe
Confidence 8887521 1 1346778889999 999987653
No 434
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=48.57 E-value=33 Score=28.67 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=45.2
Q ss_pred eEEEEcCCCChhHHHH----HhcCCceEEEecCCCCCCcEEEc---CC-----CCCC----C-------CCCceeeEEcc
Q 028410 99 KVLCVSAGAGHEVMAF----NSIGVADVTGVELMDSLPLVSRA---DP-----HNLP----F-------FDEAFDVAFTA 155 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~l----a~~~~~~v~~vD~s~~~~~~~~~---d~-----~~~~----~-------~~~~fD~i~~~ 155 (209)
+|.=+||| ..+..+ ++.|+ +|+.++.+++.++.+.. +. ..++ . ..+.+|+++..
T Consensus 2 kI~IiGaG--a~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAG--SFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred EEEEECcC--HHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 56677876 444444 44565 78888876542221111 00 0011 0 01467877763
Q ss_pred cchhhhCHHHHHHHHHH-hcccCcEEEEEEecCC
Q 028410 156 HLAEALFPSRFVGEMER-TVKIGGVCMVLMEECA 188 (209)
Q Consensus 156 ~~~~~~~~~~~l~~~~r-~LkpgG~lil~~~~~~ 188 (209)
- ...+...+++++.. .++++..++.+....+
T Consensus 79 v--ks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 79 V--PTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred e--CHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 1 11134667777777 7888877666655543
No 435
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=48.51 E-value=1.3e+02 Score=26.94 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCCChhHHHHHh-c--C--CceEEEecCCCCCCc---------EEEcC--------CCC-CCC-CCCcee
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS-I--G--VADVTGVELMDSLPL---------VSRAD--------PHN-LPF-FDEAFD 150 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~-~--~--~~~v~~vD~s~~~~~---------~~~~d--------~~~-~~~-~~~~fD 150 (209)
.++..+.|..||+|.+.....+ . + ...++|-+....+.. ...++ ... ..+ ....||
T Consensus 216 dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 216 DTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCC
Confidence 3567999999999998875443 1 1 235788887776322 11111 111 111 235688
Q ss_pred eEEccc---c------------------h---hhh--CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 151 VAFTAH---L------------------A---EAL--FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 151 ~i~~~~---~------------------~---~~~--~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.|+++. . . .+. .-..++..+..+|++||...++...
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 887751 0 0 011 1256778899999999987776654
No 436
>PRK08265 short chain dehydrogenase; Provisional
Probab=48.39 E-value=1.1e+02 Score=24.38 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCC-----------CcEEEcCCCCCC-----C-----CCCceee
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSL-----------PLVSRADPHNLP-----F-----FDEAFDV 151 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~-----------~~~~~~d~~~~~-----~-----~~~~fD~ 151 (209)
+.++|-.|++ |..+..+++ .|. +|+.+|.++.. +.++.+|+.+.. + .-+..|+
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4678888854 445555544 576 88888877542 346677776632 0 0146788
Q ss_pred EEcc
Q 028410 152 AFTA 155 (209)
Q Consensus 152 i~~~ 155 (209)
++.+
T Consensus 84 lv~~ 87 (261)
T PRK08265 84 LVNL 87 (261)
T ss_pred EEEC
Confidence 8775
No 437
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.31 E-value=30 Score=28.33 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=51.9
Q ss_pred eEEEEcCCC--ChhHHHHHhcCCceEEEecCCCCCCcE-------------EEc--C-------------CCCCCCCCCc
Q 028410 99 KVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLV-------------SRA--D-------------PHNLPFFDEA 148 (209)
Q Consensus 99 ~iLDiGcG~--G~~~~~la~~~~~~v~~vD~s~~~~~~-------------~~~--d-------------~~~~~~~~~~ 148 (209)
+|-=||+|. +..+..++..|. +|+.+|++++.++. ..+ + ..+.. .-..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 566777762 333344444566 99999998875520 011 0 00111 1245
Q ss_pred eeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 149 FDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 149 fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
.|+|+-.- .... -...++.++.+.++|+..+ ....+ ......+.+.+
T Consensus 83 aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il--~s~ts-~~~~~~la~~~ 130 (282)
T PRK05808 83 ADLVIEAA-TENMDLKKKIFAQLDEIAKPEAIL--ATNTS-SLSITELAAAT 130 (282)
T ss_pred CCeeeecc-cccHHHHHHHHHHHHhhCCCCcEE--EECCC-CCCHHHHHHhh
Confidence 68887642 2222 2468889999999998764 23222 23444555544
No 438
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=47.88 E-value=98 Score=25.92 Aligned_cols=101 Identities=10% Similarity=-0.003 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc--EEEcCCCCCCCCCCceeeEEcccchhhhCHHHHH-H
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL--VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-G 168 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~--~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l-~ 168 (209)
.+.++.=+|.| ..+..+++ .|. +|.++|.+..... +...+..++ -..-|+|+.+ +...-.-..++ +
T Consensus 144 ~gktvGIiG~G--~IG~~vA~~~~~fgm-~V~~~d~~~~~~~~~~~~~~l~el---l~~sDvv~lh-~Plt~~T~~li~~ 216 (311)
T PRK08410 144 KGKKWGIIGLG--TIGKRVAKIAQAFGA-KVVYYSTSGKNKNEEYERVSLEEL---LKTSDIISIH-APLNEKTKNLIAY 216 (311)
T ss_pred CCCEEEEECCC--HHHHHHHHHHhhcCC-EEEEECCCccccccCceeecHHHH---hhcCCEEEEe-CCCCchhhcccCH
Confidence 46788888776 66666655 354 9999998643211 111111111 1346877663 11000111222 5
Q ss_pred HHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 169 EMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 169 ~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+....+|||.+++ -+.-..--....+.+.++.-++
T Consensus 217 ~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i 251 (311)
T PRK08410 217 KELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDI 251 (311)
T ss_pred HHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCe
Confidence 5667788887643 3333334456667776665443
No 439
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=47.58 E-value=27 Score=29.70 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCeEEEEcCCCChhHHHHHhc---C---CceEEEecCCCC---------CC------------------cEEEcCCCCCC
Q 028410 97 HSKVLCVSAGAGHEVMAFNSI---G---VADVTGVELMDS---------LP------------------LVSRADPHNLP 143 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~---~---~~~v~~vD~s~~---------~~------------------~~~~~d~~~~~ 143 (209)
...+||+|+-......+|.++ | ...+.+++ +|. .. .-..|+++.-.
T Consensus 139 ~~~~LDvGANvd~~~~~L~qfA~MG~~ya~~v~~~~-~PrVgLLNIG~Ee~KG~e~~kea~~lLk~~~~~nF~GnvEg~d 217 (338)
T COG0416 139 KTVVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIK-NPRVGLLNIGTEEIKGNELVKEAYELLKETPLINFIGNVEGRD 217 (338)
T ss_pred ceEEEeCCCCCCCCHHHHHHHHHHHHHHHHHhcCCC-CCcEEEEecccccccCCHHHHHHHHHHHhCCCCceeeeccccc
Confidence 479999999998877777653 2 12445554 333 00 02355666555
Q ss_pred CCCCceeeEEcc
Q 028410 144 FFDEAFDVAFTA 155 (209)
Q Consensus 144 ~~~~~fD~i~~~ 155 (209)
.-++.+|+|+|.
T Consensus 218 i~~G~~DVvV~D 229 (338)
T COG0416 218 ILDGTVDVVVTD 229 (338)
T ss_pred cccCCCCEEEeC
Confidence 568999999996
No 440
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.47 E-value=83 Score=26.56 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=45.1
Q ss_pred cCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCcE--------EEcCCCC---CCCCCCceeeEEcccchh
Q 028410 93 LLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPLV--------SRADPHN---LPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 93 ~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~~--------~~~d~~~---~~~~~~~fD~i~~~~~~~ 159 (209)
..+++.+++-.|+| .|..+..+++ .|. +++.++.+++.... ...+..+ +.-....+|+++-..
T Consensus 177 ~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~--- 252 (357)
T PLN02514 177 LKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV--- 252 (357)
T ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC---
Confidence 34678888887653 2344444555 465 67777665432110 0001110 000012467776421
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
-....+....+.+++||+++.+-
T Consensus 253 --g~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 253 --PVFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred --CchHHHHHHHHHhccCCEEEEEC
Confidence 12346777889999999977653
No 441
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=47.06 E-value=64 Score=27.64 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCC-CcE-------EEcCCCC---CCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSL-PLV-------SRADPHN---LPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~-~~~-------~~~d~~~---~~~~~~~fD~i~~~~~~~~~ 161 (209)
+++.+|+-.|+| -|..+..+++ .|. ++++++.+++. .+. ...+..+ +.-..+.+|+++-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~----- 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV----- 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC-----
Confidence 578889988875 2334444555 465 78888876432 111 0111111 000002467776521
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.....+.+..+.+++||.++.+-
T Consensus 251 G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 SAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CcHHHHHHHHHhhcCCCEEEEEc
Confidence 12335778889999999987653
No 442
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=46.80 E-value=1.8e+02 Score=24.53 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCChhHH----HHHh-cCCceEEEecCCCCC
Q 028410 95 FNHSKVLCVSAGAGHEVM----AFNS-IGVADVTGVELMDSL 131 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~----~la~-~~~~~v~~vD~s~~~ 131 (209)
......+=.|+|||-... +|.+ .+.-+++++|+....
T Consensus 167 ~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~ 208 (300)
T COG0031 167 DGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSV 208 (300)
T ss_pred CCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCc
Confidence 334677778999995544 4444 355699999987543
No 443
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=46.74 E-value=15 Score=31.71 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc--------EEEcCCCC---CCCCCCceeeEEcccch-h
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL--------VSRADPHN---LPFFDEAFDVAFTAHLA-E 159 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~--------~~~~d~~~---~~~~~~~fD~i~~~~~~-~ 159 (209)
++.+|+=+|+| ..+...++ .|. +|+.+|.++...+ .+..+..+ +.-.-..+|+|++.... .
T Consensus 166 ~~~~VlViGaG--~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g 242 (370)
T TIGR00518 166 EPGDVTIIGGG--VVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPG 242 (370)
T ss_pred CCceEEEEcCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCC
Confidence 45679989886 44444433 475 8999998764221 11111111 11001468999974211 1
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.-.|.-+-+++.+.+|||+.++-+...
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 111222336667778999887655433
No 444
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=46.73 E-value=36 Score=28.21 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=50.7
Q ss_pred eEEEEcCCCChhHHHHH----hcCCceEEEecCCCCCCcEEE-------cCCCCCCCCCCceeeEEcccchhhhCHHHHH
Q 028410 99 KVLCVSAGAGHEVMAFN----SIGVADVTGVELMDSLPLVSR-------ADPHNLPFFDEAFDVAFTAHLAEALFPSRFV 167 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la----~~~~~~v~~vD~s~~~~~~~~-------~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l 167 (209)
+|-=||+| ..+..++ +.|+ +|+.+|.+++..+-.. .+..+..-.....|+|+..- ........++
T Consensus 2 ~Ig~IGlG--~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v-~~~~~~~~v~ 77 (301)
T PRK09599 2 QLGMIGLG--RMGGNMARRLLRGGH-EVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMV-PAGEITDATI 77 (301)
T ss_pred EEEEEccc--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEe-cCCcHHHHHH
Confidence 45556665 5554444 4465 8999999876443111 01111100001247776631 1111234555
Q ss_pred HHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 168 GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 168 ~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
..+...+++|. +++............+.+.+...+
T Consensus 78 ~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g 112 (301)
T PRK09599 78 DELAPLLSPGD-IVIDGGNSYYKDDIRRAELLAEKG 112 (301)
T ss_pred HHHHhhCCCCC-EEEeCCCCChhHHHHHHHHHHHcC
Confidence 67777888865 444444444445555666666555
No 445
>PRK06436 glycerate dehydrogenase; Provisional
Probab=46.61 E-value=64 Score=27.03 Aligned_cols=103 Identities=7% Similarity=-0.037 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHH-HHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEM 170 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l-~~~ 170 (209)
.+.+|.=+|.| ..+..+++ .|. +|+++|.+......... ..++.---...|+|+.+--.. -....++ .+.
T Consensus 121 ~gktvgIiG~G--~IG~~vA~~l~afG~-~V~~~~r~~~~~~~~~~-~~~l~ell~~aDiv~~~lp~t-~~T~~li~~~~ 195 (303)
T PRK06436 121 YNKSLGILGYG--GIGRRVALLAKAFGM-NIYAYTRSYVNDGISSI-YMEPEDIMKKSDFVLISLPLT-DETRGMINSKM 195 (303)
T ss_pred CCCEEEEECcC--HHHHHHHHHHHHCCC-EEEEECCCCcccCcccc-cCCHHHHHhhCCEEEECCCCC-chhhcCcCHHH
Confidence 46788888886 55555444 465 99999987432111100 111110114578887741100 0111122 556
Q ss_pred HHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 171 ~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+|||..+ +-+.-..-...+.+.+.++...+
T Consensus 196 l~~mk~ga~l-IN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 196 LSLFRKGLAI-INVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred HhcCCCCeEE-EECCCccccCHHHHHHHHHcCCc
Confidence 6778887653 44444444566667777665433
No 446
>PRK07877 hypothetical protein; Provisional
Probab=46.53 E-value=1.3e+02 Score=28.67 Aligned_cols=92 Identities=9% Similarity=0.104 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCCChh-HHHHHhcCC-ceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHHHHHHHh
Q 028410 96 NHSKVLCVSAGAGHE-VMAFNSIGV-ADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERT 173 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~-~~~la~~~~-~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~ 173 (209)
...+|+=+|||-|.. +..|+..|. ++++-+|.+.-. ..|..+..+ ...|+ -.......++-.+.
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve----~sNLnRq~~--~~~di--------G~~Kv~~a~~~l~~ 171 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLE----LSNLNRVPA--GVFDL--------GVNKAVVAARRIAE 171 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEc----ccccccccC--Chhhc--------ccHHHHHHHHHHHH
Confidence 468999999997754 444566785 899999975322 122222111 01110 00345566666677
Q ss_pred cccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 174 VKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 174 LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
+.|+-.+.......+ ...+.+++..+++
T Consensus 172 inp~i~v~~~~~~i~---~~n~~~~l~~~Dl 199 (722)
T PRK07877 172 LDPYLPVEVFTDGLT---EDNVDAFLDGLDV 199 (722)
T ss_pred HCCCCEEEEEeccCC---HHHHHHHhcCCCE
Confidence 777766544443322 2334445555544
No 447
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=46.46 E-value=75 Score=26.10 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=34.5
Q ss_pred eEEEEcCCCChhHHHHHhc--CCceEEEecCCCCCCcEEEcCCCCCC-----CCCCceeeEEcc
Q 028410 99 KVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPLVSRADPHNLP-----FFDEAFDVAFTA 155 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~~--~~~~v~~vD~s~~~~~~~~~d~~~~~-----~~~~~fD~i~~~ 155 (209)
+||=.| |+|..+.++.+. ..++|+++|.... ...+|+.+.. +....+|+|+..
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~~g~V~~~~~~~~---~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 61 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAPLGNLIALDVHST---DYCGDFSNPEGVAETVRKIRPDVIVNA 61 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhccCCEEEeccccc---cccCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 677777 788999988772 2237899887543 2356776632 223357888864
No 448
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=46.38 E-value=20 Score=26.12 Aligned_cols=30 Identities=23% Similarity=0.056 Sum_probs=16.9
Q ss_pred EEcCCCC--hhHHHHH--h-cCCceEEEecCCCCC
Q 028410 102 CVSAGAG--HEVMAFN--S-IGVADVTGVELMDSL 131 (209)
Q Consensus 102 DiGcG~G--~~~~~la--~-~~~~~v~~vD~s~~~ 131 (209)
|||+..| .....+. . .+..+|+++|+++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~ 35 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSN 35 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 8999999 5555543 2 234689999998773
No 449
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=46.19 E-value=53 Score=28.01 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=34.0
Q ss_pred CceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 147 EAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
..||.|+... .... ...-.+..+.+.|+|||.++++-.. ....+++.+.+..
T Consensus 75 ~~~d~~~~~~-pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~--~~g~~s~~k~~~~ 127 (342)
T PRK09489 75 ADCDTLIYYW-PKNKQEAQFQLMNLLSLLPVGTDIFVVGEN--RSGVRSAEKMLAD 127 (342)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEEec--cccHHHHHHHHHH
Confidence 5799887732 2222 3466788999999999997666544 3345555555544
No 450
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=45.98 E-value=88 Score=25.67 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=48.8
Q ss_pred cccCCCCCeEEEEcCCCChhHHHH---Hh-cCCceEEEecCCCCCCcEE-------EcCCCCCCCCCCceeeEEcccchh
Q 028410 91 KSLLFNHSKVLCVSAGAGHEVMAF---NS-IGVADVTGVELMDSLPLVS-------RADPHNLPFFDEAFDVAFTAHLAE 159 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~G~~~~~l---a~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~~~~~~fD~i~~~~~~~ 159 (209)
...+.++.++|=.||| ..+..+ ++ .|. +++.++.++...++. ..+.... +...+|+++....
T Consensus 162 ~~~~~~~~~vlV~g~g--~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~vD~vi~~~~-- 234 (329)
T cd08298 162 LAGLKPGQRLGLYGFG--ASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDDL--PPEPLDAAIIFAP-- 234 (329)
T ss_pred hhCCCCCCEEEEECCc--HHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCcc--CCCcccEEEEcCC--
Confidence 3456778888888654 454443 44 464 888887665432211 1111111 2346887764211
Q ss_pred hhCHHHHHHHHHHhcccCcEEEEE
Q 028410 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 160 ~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
....+.++.+.++++|.++..
T Consensus 235 ---~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 ---VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred ---cHHHHHHHHHHhhcCCEEEEE
Confidence 124688899999999998864
No 451
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=45.84 E-value=35 Score=27.14 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=37.1
Q ss_pred eEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCc----------EEEcCCCCCC----CCCCceeeEEcc
Q 028410 99 KVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPL----------VSRADPHNLP----FFDEAFDVAFTA 155 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~----------~~~~d~~~~~----~~~~~fD~i~~~ 155 (209)
+++=+||| .++..+++ .|+ +|+.+|.+++..+ .+++|..+.. ..-..+|+++..
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 56677776 77777766 366 9999999887432 6678877632 234678888763
No 452
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.58 E-value=89 Score=24.72 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=41.4
Q ss_pred CCCCeEEEEcCC-CChhHHHHHhcCCceEEEecCCCCCCcEEEcCCCC---CCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAG-AGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHN---LPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG-~G~~~~~la~~~~~~v~~vD~s~~~~~~~~~d~~~---~~~~~~~fD~i~~~ 155 (209)
..+..+|-+|.- +|.+...+... ..+|+.+|+.|.+-.++..++.- +.++.+.+|+|+--
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~~DlivDl 106 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGEVDLIVDL 106 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCCCCccHhhhcCCCCCceeEEEec
Confidence 678899999875 44444444433 34999999999877766555432 44667888988863
No 453
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=45.20 E-value=79 Score=26.97 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=49.8
Q ss_pred ccCCCCCeEEEEcCCCChhHHHH---Hh-cCCceEEEecCCCCCCcE-------EEcCCCCC---C--------CCCCce
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAF---NS-IGVADVTGVELMDSLPLV-------SRADPHNL---P--------FFDEAF 149 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~l---a~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~---~--------~~~~~f 149 (209)
..++++.+||=.|+ |..+..+ ++ .|...|++++.++...+. ...+..+. . .+...+
T Consensus 199 ~~~~~g~~VlV~g~--g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gv 276 (384)
T cd08265 199 GGFRPGAYVVVYGA--GPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGA 276 (384)
T ss_pred CCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCC
Confidence 35677888888765 4555543 44 465478888876542110 01111100 0 123458
Q ss_pred eeEEcccchhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 150 D~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
|+|+... . .+...+.+..+.|+++|+++.+
T Consensus 277 Dvvld~~-g---~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 277 DIQVEAA-G---APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CEEEECC-C---CcHHHHHHHHHHHHcCCEEEEE
Confidence 8887631 1 2345678889999999998765
No 454
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.97 E-value=61 Score=26.75 Aligned_cols=81 Identities=22% Similarity=0.176 Sum_probs=46.9
Q ss_pred CeEEEEcCCCC--hhHHHHHhcCCceEEEecCCCCCCcE-------------EEcCCC---------CCC-----CCCCc
Q 028410 98 SKVLCVSAGAG--HEVMAFNSIGVADVTGVELMDSLPLV-------------SRADPH---------NLP-----FFDEA 148 (209)
Q Consensus 98 ~~iLDiGcG~G--~~~~~la~~~~~~v~~vD~s~~~~~~-------------~~~d~~---------~~~-----~~~~~ 148 (209)
.+|-=||+|+= ..+..++..|+ +|+.+|.+++.++- ..+... ++. -.-..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhCC
Confidence 47888888732 33333444677 99999999885431 111110 000 01145
Q ss_pred eeeEEcccchhhh-CHHHHHHHHHHhc-ccCcEE
Q 028410 149 FDVAFTAHLAEAL-FPSRFVGEMERTV-KIGGVC 180 (209)
Q Consensus 149 fD~i~~~~~~~~~-~~~~~l~~~~r~L-kpgG~l 180 (209)
.|+|+-+ +.+.. -...++.++.+.+ +||..+
T Consensus 85 ~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il 117 (286)
T PRK07819 85 RQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL 117 (286)
T ss_pred CCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE
Confidence 6888764 33333 3477888888888 777653
No 455
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=44.62 E-value=1.3e+02 Score=22.54 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCCChhHHH-HHhc-CCceEEEecCCCCCCcEE-------EcCCCCCCCCCCceeeEEcccchhhhCHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMA-FNSI-GVADVTGVELMDSLPLVS-------RADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~-la~~-~~~~v~~vD~s~~~~~~~-------~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~ 165 (209)
..+.+|.=+|+|+...+.. .... +..-...+|.++...... ..+.+. +.+...|.++... +....+
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~--l~~~~pd~vivla---w~y~~E 140 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEE--LKERKPDYVIVLA---WNYKDE 140 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG----SS--SEEEES----GGGHHH
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHH--HhhCCCCEEEEcC---hhhHHH
Confidence 5678899999997655432 2223 222345678877643311 111111 2345678776522 223678
Q ss_pred HHHHHHHhcccCcEEEEEE
Q 028410 166 FVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 166 ~l~~~~r~LkpgG~lil~~ 184 (209)
+.+.+.+.++.||.+++.+
T Consensus 141 I~~~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 141 IIEKLREYLERGGKFIVPL 159 (160)
T ss_dssp HHHHTHHHHHTT-EEEE-S
T ss_pred HHHHHHHHHhcCCEEEEeC
Confidence 8888889999999988753
No 456
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=44.31 E-value=69 Score=26.56 Aligned_cols=84 Identities=7% Similarity=-0.019 Sum_probs=48.6
Q ss_pred cCCCCCeEEEEcCCCChhHHH---HHh-cCCceEEEecCCCCCCcEE-------EcCCCCCCC-----CCCceeeEEccc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMA---FNS-IGVADVTGVELMDSLPLVS-------RADPHNLPF-----FDEAFDVAFTAH 156 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~---la~-~~~~~v~~vD~s~~~~~~~-------~~d~~~~~~-----~~~~fD~i~~~~ 156 (209)
.+.++.+||=.|+ |..+.. +++ .|. +++.++.++...++. ..+..+..+ ....+|+++...
T Consensus 160 ~~~~~~~vlV~g~--g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~ 236 (333)
T cd08296 160 GAKPGDLVAVQGI--GGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATA 236 (333)
T ss_pred CCCCCCEEEEECC--cHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECC
Confidence 5577889999885 445444 444 465 788888776533211 011111000 012477777521
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
-....+.+..+.++++|.++..-
T Consensus 237 -----g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 237 -----PNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred -----CchHHHHHHHHHcccCCEEEEEe
Confidence 12346788899999999977654
No 457
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=44.18 E-value=1.7e+02 Score=23.75 Aligned_cols=90 Identities=12% Similarity=-0.035 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChhHHHHHhcCCceEEEecCCCC-----------------CCcEEEcCCCC-C-------CCCCCceee
Q 028410 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHN-L-------PFFDEAFDV 151 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~-----------------~~~~~~~d~~~-~-------~~~~~~fD~ 151 (209)
...|+.+|||.-.-...+.......++-+|.-+. ...++..|+.+ + .|..+.--+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 4569999999766665554321124555554321 01144455431 1 122233445
Q ss_pred EEcccchhhhCH---HHHHHHHHHhcccCcEEEEEEec
Q 028410 152 AFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 152 i~~~~~~~~~~~---~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+++-.+..++++ ..+++.+.+...||+.+++-...
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 566567777744 66788888888899997776543
No 458
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=44.12 E-value=50 Score=26.91 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=34.1
Q ss_pred cCCCCCeEEEEcCCCChhHHHHHhcCCceEEEecCCCCCCc
Q 028410 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (209)
Q Consensus 93 ~~~~~~~iLDiGcG~G~~~~~la~~~~~~v~~vD~s~~~~~ 133 (209)
...++..|||-=+|+|..+......+. ..+|+|+++..++
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~ 258 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVE 258 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHH
Confidence 568999999999999999998877764 8999999887443
No 459
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=43.96 E-value=1.5e+02 Score=22.79 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+..|++++.+ +... ......|||||.+++-.
T Consensus 65 ~~~~D~lva~d------~~~~-~~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 65 EGQADLLLALE------PAEV-ARNLHFLKKGGKIIVNA 96 (197)
T ss_pred CCCCCEEEEcC------HHHH-HHHHhhcCCCcEEEEEC
Confidence 57899999843 3332 44567799999876554
No 460
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=43.89 E-value=6.6 Score=29.42 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=49.2
Q ss_pred eEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcE-------EEcCCCCCCCCCCceeeEEcccchhhhCHHHHH
Q 028410 99 KVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLV-------SRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV 167 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~-------~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l 167 (209)
+|-=||+| ..+..+++ .|+ +|++.|.+++..+- ...+..+. -...|+|++.-... -....++
T Consensus 3 ~Ig~IGlG--~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~~s~~e~---~~~~dvvi~~v~~~-~~v~~v~ 75 (163)
T PF03446_consen 3 KIGFIGLG--NMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVADSPAEA---AEQADVVILCVPDD-DAVEAVL 75 (163)
T ss_dssp EEEEE--S--HHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEESSHHHH---HHHBSEEEE-SSSH-HHHHHHH
T ss_pred EEEEEchH--HHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhhhhhhhH---hhcccceEeecccc-hhhhhhh
Confidence 34456654 77776665 376 89999998764431 11111111 13458887631111 1134555
Q ss_pred HH--HHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 168 GE--MERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 168 ~~--~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
.+ +...|++|.. ++-...........+.+.+...+
T Consensus 76 ~~~~i~~~l~~g~i-iid~sT~~p~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 76 FGENILAGLRPGKI-IIDMSTISPETSRELAERLAAKG 112 (163)
T ss_dssp HCTTHGGGS-TTEE-EEE-SS--HHHHHHHHHHHHHTT
T ss_pred hhhHHhhccccceE-EEecCCcchhhhhhhhhhhhhcc
Confidence 55 6666766554 45555555666677777766554
No 461
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.65 E-value=33 Score=29.21 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=51.2
Q ss_pred cCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCC----Cc------EEEcCCC-C-CCCCCCceeeEEcccch
Q 028410 93 LLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSL----PL------VSRADPH-N-LPFFDEAFDVAFTAHLA 158 (209)
Q Consensus 93 ~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~----~~------~~~~d~~-~-~~~~~~~fD~i~~~~~~ 158 (209)
.+.++.++--+|.| -|..+..+|+ .|. +|+++|-++.. ++ |+...-+ + ..--.++.|.++-.-..
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeee
Confidence 34688888877754 6888888888 576 99999988631 11 2211100 0 00001233333221000
Q ss_pred hhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 159 EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
.....+..+.+.||++|.++++--.
T Consensus 257 ---~a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 257 ---LAEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ---ccccchHHHHHHhhcCCEEEEEeCc
Confidence 0233456678899999998877443
No 462
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=43.45 E-value=35 Score=23.16 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=24.1
Q ss_pred CCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEec
Q 028410 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
...+|+++.... + -..+..+..+...++-||.+++.++.
T Consensus 9 G~e~~~~i~d~~-~-g~~pnal~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 9 GQEFDLLIFDAF-E-GFDPNALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp T--BSSEEEE-S-S----HHHHHHHHTTB-TT-EEEEEES-
T ss_pred CCccCEEEEEcc-C-CCCHHHHHHHhcceecCeEEEEEcCC
Confidence 356888877431 1 23577888999999999999999876
No 463
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=43.44 E-value=1.5e+02 Score=24.82 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=52.2
Q ss_pred CeEEEEcCCC--ChhHHHHHhcCCceEEEecCCCCC--Cc---EEEcC--------------CCCCCCCCCceeeEEccc
Q 028410 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSL--PL---VSRAD--------------PHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 98 ~~iLDiGcG~--G~~~~~la~~~~~~v~~vD~s~~~--~~---~~~~d--------------~~~~~~~~~~fD~i~~~~ 156 (209)
++|.=+|+|. +.++..+++.|+ +|+.+|.++.. +. ....+ ....+-....+|+|+..-
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 4577787772 233444445576 89889876421 00 00000 000011124688887732
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
...+...++.++...++++..++.+... -.....+.+.+....
T Consensus 82 --k~~~~~~~~~~l~~~~~~~~iii~~~nG--~~~~~~l~~~~~~~~ 124 (341)
T PRK08229 82 --KSAATADAAAALAGHARPGAVVVSFQNG--VRNADVLRAALPGAT 124 (341)
T ss_pred --cCcchHHHHHHHHhhCCCCCEEEEeCCC--CCcHHHHHHhCCCCc
Confidence 1113466778888888887654444332 233455666666543
No 464
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=43.24 E-value=29 Score=32.38 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCC-C-hhHHHHHhcCCceEEEecCCC
Q 028410 96 NHSKVLCVSAGA-G-HEVMAFNSIGVADVTGVELMD 129 (209)
Q Consensus 96 ~~~~iLDiGcG~-G-~~~~~la~~~~~~v~~vD~s~ 129 (209)
...+||=+|||+ | ..+..|+..|.++++.+|.+.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 368999999995 4 466667778999999999754
No 465
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=43.18 E-value=40 Score=27.70 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=52.4
Q ss_pred CeEEEEcCCC--ChhHHHHHhcCCceEEEecCCCCCCcEE----------------EcCC---------CCCCC-----C
Q 028410 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVS----------------RADP---------HNLPF-----F 145 (209)
Q Consensus 98 ~~iLDiGcG~--G~~~~~la~~~~~~v~~vD~s~~~~~~~----------------~~d~---------~~~~~-----~ 145 (209)
.+|.=+|+|. +..+..++..|+ +|+.+|.+++.++-. .+.. .++.. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 4577788873 123333444576 899999998754310 0110 00100 0
Q ss_pred CCceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 146 ~~~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
-...|+|+..- .... ....+++++.+.++|+..+ +...+ ......+.+.+.
T Consensus 83 ~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il--~S~ts-g~~~~~la~~~~ 134 (291)
T PRK06035 83 LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETII--ASNTS-GIMIAEIATALE 134 (291)
T ss_pred hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEE--EEcCC-CCCHHHHHhhcC
Confidence 13467777642 2222 2467788888888887653 33332 345556665554
No 466
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=42.74 E-value=82 Score=31.71 Aligned_cols=89 Identities=11% Similarity=-0.001 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCChhHHHHHhc-CCceEEEecCCCCC---------CcEEEcCCCCCCC-CCCceeeEEccc-----c-h
Q 028410 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------PLVSRADPHNLPF-FDEAFDVAFTAH-----L-A 158 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~~-~~~~v~~vD~s~~~---------~~~~~~d~~~~~~-~~~~fD~i~~~~-----~-~ 158 (209)
.+..+||+|.|+- .+-|.-. +...|+.+|.-|.. -++++.|.....+ ....+|.+.|.- . .
T Consensus 822 ~~~~~lDLGTGPE--~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~ 899 (1289)
T PF06016_consen 822 DPDHWLDLGTGPE--CRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAAS 899 (1289)
T ss_dssp CC-CEEEET--TT---CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHH
T ss_pred CcceEEEccCCcc--ceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhc
Confidence 5789999987754 3334443 24589999987652 2488999877654 346789998842 1 2
Q ss_pred hhhCHHHHHHHHHHhcccCc--EEEEEEec
Q 028410 159 EALFPSRFVGEMERTVKIGG--VCMVLMEE 186 (209)
Q Consensus 159 ~~~~~~~~l~~~~r~LkpgG--~lil~~~~ 186 (209)
...+....++.+.+.+++.| ++++-.+.
T Consensus 900 a~~tl~~~l~~~l~~~~~~~~~~l~lQLNc 929 (1289)
T PF06016_consen 900 ANVTLDAGLQQFLSQCVQANVKRLWLQLNC 929 (1289)
T ss_dssp CT--HHHHHHHHHHHHHCTT-SEEEEE-B-
T ss_pred CCCcHHHHHHHHHHHHHhCCccEEEEEecC
Confidence 22267888899999888866 34554544
No 467
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=42.70 E-value=72 Score=21.17 Aligned_cols=41 Identities=7% Similarity=-0.075 Sum_probs=27.8
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCC
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~ 188 (209)
..+|+++...-....+..++++++.+.- |+..++++....+
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVVTDEDD 82 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEEESSTS
T ss_pred cCceEEEEEeeecccccccccccccccc-ccccEEEecCCCC
Confidence 3478887764444356778888886666 8888877776543
No 468
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.69 E-value=34 Score=29.15 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=52.0
Q ss_pred ccCCCCCeEEEEcCCCChhHHHH-Hh-cCCceEEEecCCCCCCc---------EEEc-CCCCCC-------CCCCceeeE
Q 028410 92 SLLFNHSKVLCVSAGAGHEVMAF-NS-IGVADVTGVELMDSLPL---------VSRA-DPHNLP-------FFDEAFDVA 152 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~G~~~~~l-a~-~~~~~v~~vD~s~~~~~---------~~~~-d~~~~~-------~~~~~fD~i 152 (209)
+..+++.++.-+|+|.=-++... ++ .|.++++|+|++++..+ ++.. |..+ | ..++-+|+-
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~-~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKK-PIQEVIIEMTDGGVDYS 266 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccc-cHHHHHHHHhcCCceEE
Confidence 34588999999998854333333 33 48889999999988332 2211 1111 1 123555554
Q ss_pred EcccchhhhCHHHHHHHHHHhcccC-cEEEEE
Q 028410 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (209)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~r~Lkpg-G~lil~ 183 (209)
+- ..-....+++.....+.| |.-+++
T Consensus 267 fE-----c~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 267 FE-----CIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred EE-----ecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 42 122355677788888888 776555
No 469
>PLN00016 RNA-binding protein; Provisional
Probab=42.38 E-value=66 Score=27.47 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=39.8
Q ss_pred CCCCeEEEE----cCCCChhHHHHHh----cCCceEEEecCCCC-------------------CCcEEEcCCCCCC--CC
Q 028410 95 FNHSKVLCV----SAGAGHEVMAFNS----IGVADVTGVELMDS-------------------LPLVSRADPHNLP--FF 145 (209)
Q Consensus 95 ~~~~~iLDi----GcG~G~~~~~la~----~~~~~v~~vD~s~~-------------------~~~~~~~d~~~~~--~~ 145 (209)
....+||=+ | |+|..+..+++ .|+ +|++++.++. .++++.+|+.++. +.
T Consensus 50 ~~~~~VLVt~~~~G-atG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~ 127 (378)
T PLN00016 50 VEKKKVLIVNTNSG-GHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVA 127 (378)
T ss_pred cccceEEEEeccCC-CceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhc
Confidence 334679988 6 78888887765 366 8999886643 1456778876632 22
Q ss_pred CCceeeEEcc
Q 028410 146 DEAFDVAFTA 155 (209)
Q Consensus 146 ~~~fD~i~~~ 155 (209)
...+|+|+..
T Consensus 128 ~~~~d~Vi~~ 137 (378)
T PLN00016 128 GAGFDVVYDN 137 (378)
T ss_pred cCCccEEEeC
Confidence 3468988864
No 470
>PLN02702 L-idonate 5-dehydrogenase
Probab=42.01 E-value=1.2e+02 Score=25.42 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=50.0
Q ss_pred ccCCCCCeEEEEcCC-CChhHHHHHh-cCCceEEEecCCCCCCc---------EEEcCCC--CCC--------CCCCcee
Q 028410 92 SLLFNHSKVLCVSAG-AGHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPH--NLP--------FFDEAFD 150 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG-~G~~~~~la~-~~~~~v~~vD~s~~~~~---------~~~~d~~--~~~--------~~~~~fD 150 (209)
..+.++.+||-.|+| .|..+..+++ .|...++++|.++...+ .+.-+.. +++ ...+.+|
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 345778888888754 2344444555 46656888887654221 1111111 110 1124578
Q ss_pred eEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 151 ~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
+++... .....+.+..+.|+++|.++..-
T Consensus 257 ~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 257 VSFDCV-----GFNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred EEEECC-----CCHHHHHHHHHHHhcCCEEEEEc
Confidence 887631 11345788999999999976553
No 471
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=41.57 E-value=1.3e+02 Score=23.76 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=46.9
Q ss_pred eEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCC------cEEEcCCCCCCC--C-CCceeeEEcccchhhh----
Q 028410 99 KVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLP------LVSRADPHNLPF--F-DEAFDVAFTAHLAEAL---- 161 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~------~~~~~d~~~~~~--~-~~~fD~i~~~~~~~~~---- 161 (209)
+|--|| -+|..+..+.+ +|+ +||++=-++..+ ..++.|+.++.- . -..||+|++.+-....
T Consensus 2 KIaiIg-AsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~ 79 (211)
T COG2910 2 KIAIIG-ASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDE 79 (211)
T ss_pred eEEEEe-cCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhH
Confidence 344455 46888877765 577 999998776644 367888887653 1 2569999996322211
Q ss_pred CHHHHHHHHHHhccc
Q 028410 162 FPSRFVGEMERTVKI 176 (209)
Q Consensus 162 ~~~~~l~~~~r~Lkp 176 (209)
.-.+..+.+...||-
T Consensus 80 ~~~k~~~~li~~l~~ 94 (211)
T COG2910 80 LHSKSIEALIEALKG 94 (211)
T ss_pred HHHHHHHHHHHHHhh
Confidence 123335555555655
No 472
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=41.27 E-value=51 Score=31.42 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHH-hccccc
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL-FRTSSF 204 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l-~~~~~~ 204 (209)
..+++++++.+|+++|.+++.+...+....-.+.+. +++.|+
T Consensus 567 ~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl 609 (875)
T COG1743 567 FREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGL 609 (875)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCc
Confidence 377899999999999999999988887777777777 888776
No 473
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.16 E-value=22 Score=29.50 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCC--hhHHHHHhcCCceEEEecCCCCCCcEEEc------------C----------C-CCCCCCCCceee
Q 028410 97 HSKVLCVSAGAG--HEVMAFNSIGVADVTGVELMDSLPLVSRA------------D----------P-HNLPFFDEAFDV 151 (209)
Q Consensus 97 ~~~iLDiGcG~G--~~~~~la~~~~~~v~~vD~s~~~~~~~~~------------d----------~-~~~~~~~~~fD~ 151 (209)
-.+|.=||+|.- ..+..++..|+ +|+.+|.+++.++.... + . .+..-.-...|+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 356777888732 23333344565 89999988764321110 0 0 011100135688
Q ss_pred EEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhc
Q 028410 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (209)
Q Consensus 152 i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~ 200 (209)
|+..--........++.++...++++.. +. .... ......+.+.+.
T Consensus 83 Vi~av~~~~~~~~~v~~~l~~~~~~~~i-i~-s~ts-g~~~~~l~~~~~ 128 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLDGLCDPDTI-FA-TNTS-GLPITAIAQAVT 128 (311)
T ss_pred EEEeccCcHHHHHHHHHHHHHhCCCCcE-EE-ECCC-CCCHHHHHhhcC
Confidence 8764221111245677777777766543 22 2222 223455555543
No 474
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=41.11 E-value=24 Score=28.59 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHHHhcC-CceEEEecCCCCCCcEE-EcCCCCCCC----CCCceeeEEccc-chhhhCHHHHHHHHHHhcccCcEEEEE
Q 028410 111 VMAFNSIG-VADVTGVELMDSLPLVS-RADPHNLPF----FDEAFDVAFTAH-LAEALFPSRFVGEMERTVKIGGVCMVL 183 (209)
Q Consensus 111 ~~~la~~~-~~~v~~vD~s~~~~~~~-~~d~~~~~~----~~~~fD~i~~~~-~~~~~~~~~~l~~~~r~LkpgG~lil~ 183 (209)
+..|.+.| ..+|+|+|.++...+.. ..++.+-.. .-..+|+|+.+- +. ...+++.++...+++|+.++=+
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~---~~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS---AIEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH---HHHHHHHHHHCGS-TTSEEEE-
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH---HHHHHHHHhhhhcCCCcEEEEe
Confidence 45666655 35999999998754321 111111100 014468887642 22 2577888888888888875544
Q ss_pred EecCCcccHHHHHHHhc
Q 028410 184 MEECAGREIKQIVELFR 200 (209)
Q Consensus 184 ~~~~~~~~~~~~~~l~~ 200 (209)
.+.. ......+.+.+.
T Consensus 79 ~SvK-~~~~~~~~~~~~ 94 (258)
T PF02153_consen 79 GSVK-APIVEAMERLLP 94 (258)
T ss_dssp -S-C-HHHHHHHHHHHT
T ss_pred CCCC-HHHHHHHHHhcC
Confidence 4433 334444444444
No 475
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=41.04 E-value=1.1e+02 Score=24.63 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=33.7
Q ss_pred CceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcc
Q 028410 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (209)
Q Consensus 147 ~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~ 201 (209)
..+|+|+.. ....+...+++.+...+.+++.+++..+..+ ....+.+.+..
T Consensus 58 ~~~D~iiv~--vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g--~~~~l~~~~~~ 108 (293)
T TIGR00745 58 PPADLVIIT--VKAYQTEEAAALLLPLIGKNTKVLFLQNGLG--HEERLRELLPA 108 (293)
T ss_pred CCCCEEEEe--ccchhHHHHHHHhHhhcCCCCEEEEccCCCC--CHHHHHHHhCc
Confidence 479999873 2222467788889999999988766555543 34455555543
No 476
>PRK06932 glycerate dehydrogenase; Provisional
Probab=40.92 E-value=1.1e+02 Score=25.75 Aligned_cols=102 Identities=9% Similarity=0.005 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcccchhhhCHHHHH-HHH
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFV-GEM 170 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l-~~~ 170 (209)
.+.+|.=+|.| ..+..+++ .|. +|+++|.+.... . .....++.---..-|+|+.+- ...-+...++ ++.
T Consensus 146 ~gktvgIiG~G--~IG~~va~~l~~fg~-~V~~~~~~~~~~-~-~~~~~~l~ell~~sDiv~l~~-Plt~~T~~li~~~~ 219 (314)
T PRK06932 146 RGSTLGVFGKG--CLGTEVGRLAQALGM-KVLYAEHKGASV-C-REGYTPFEEVLKQADIVTLHC-PLTETTQNLINAET 219 (314)
T ss_pred CCCEEEEECCC--HHHHHHHHHHhcCCC-EEEEECCCcccc-c-ccccCCHHHHHHhCCEEEEcC-CCChHHhcccCHHH
Confidence 46788888876 56665555 465 899998653211 0 000111110014568777631 1000112222 456
Q ss_pred HHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 171 ERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 171 ~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
...+|||.++ +-+.-..-.....+.+.++.-++
T Consensus 220 l~~mk~ga~l-IN~aRG~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 220 LALMKPTAFL-INTGRGPLVDEQALLDALENGKI 252 (314)
T ss_pred HHhCCCCeEE-EECCCccccCHHHHHHHHHcCCc
Confidence 6677887764 33333334456667776665444
No 477
>PLN02928 oxidoreductase family protein
Probab=40.91 E-value=63 Score=27.58 Aligned_cols=104 Identities=11% Similarity=0.096 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcE-------------E--EcCCCCCCCCCCceeeEEccc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLV-------------S--RADPHNLPFFDEAFDVAFTAH 156 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~-------------~--~~d~~~~~~~~~~fD~i~~~~ 156 (209)
.+.++.=+|.| ..+..+++ .|. +|+++|.+...... . .....++.---...|+|+++-
T Consensus 158 ~gktvGIiG~G--~IG~~vA~~l~afG~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 158 FGKTVFILGYG--AIGIELAKRLRPFGV-KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCEEEEECCC--HHHHHHHHHHhhCCC-EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 46788888876 55555554 465 99999987321100 0 001111110114578887741
Q ss_pred chhhhCHHHHH-HHHHHhcccCcEEEEEEecCCcccHHHHHHHhccccc
Q 028410 157 LAEALFPSRFV-GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSSF 204 (209)
Q Consensus 157 ~~~~~~~~~~l-~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~~ 204 (209)
-.. -....++ .+....+|||.++ +-+.-..--....+.+.++.-.+
T Consensus 235 Plt-~~T~~li~~~~l~~Mk~ga~l-INvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 235 TLT-KETAGIVNDEFLSSMKKGALL-VNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred CCC-hHhhcccCHHHHhcCCCCeEE-EECCCccccCHHHHHHHHHcCCe
Confidence 100 0112222 5677778887753 44433344566667776665443
No 478
>PLN02256 arogenate dehydrogenase
Probab=40.42 E-value=57 Score=27.29 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=48.6
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEEE----cCCCCCC-CCCCceeeEEcccchhhhCHHH
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVSR----ADPHNLP-FFDEAFDVAFTAHLAEALFPSR 165 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~~----~d~~~~~-~~~~~fD~i~~~~~~~~~~~~~ 165 (209)
....+|.=||+| ..+..++. .|. +|+++|.++.. +... ....+.. ......|+|+..--.. ....
T Consensus 34 ~~~~kI~IIG~G--~mG~slA~~L~~~G~-~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~--~~~~ 107 (304)
T PLN02256 34 SRKLKIGIVGFG--NFGQFLAKTFVKQGH-TVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL--STEA 107 (304)
T ss_pred CCCCEEEEEeeC--HHHHHHHHHHHhCCC-EEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH--HHHH
Confidence 456788889876 44444443 454 89999988531 1000 0011110 1123468887742111 2355
Q ss_pred HHHHH-HHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 166 FVGEM-ERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 166 ~l~~~-~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
++.++ ...++||.. ++-+.+.-......+.+.+
T Consensus 108 vl~~l~~~~l~~~~i-viDv~SvK~~~~~~~~~~l 141 (304)
T PLN02256 108 VLRSLPLQRLKRSTL-FVDVLSVKEFPKNLLLQVL 141 (304)
T ss_pred HHHhhhhhccCCCCE-EEecCCchHHHHHHHHHhC
Confidence 56666 455777764 3444332223344444444
No 479
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.92 E-value=2e+02 Score=23.14 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=46.1
Q ss_pred ccCCCCCeEEEEcC--CCChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCC-----CCCCCceeeEEccc
Q 028410 92 SLLFNHSKVLCVSA--GAGHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNL-----PFFDEAFDVAFTAH 156 (209)
Q Consensus 92 ~~~~~~~~iLDiGc--G~G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~-----~~~~~~fD~i~~~~ 156 (209)
..+.++.+++-.|+ +.|.....+++ .|. ++++++.+ ...++ ...+.... ....+.+|+++...
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 216 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAV 216 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECC
Confidence 34678899999997 34566666666 465 77777643 21110 00111111 12335688887632
Q ss_pred chhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 157 LAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 157 ~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
-.. .......+ ..++++|.++.+.
T Consensus 217 ~~~---~~~~~~~~-~~l~~~g~~i~~g 240 (319)
T cd08267 217 GNS---PFSLYRAS-LALKPGGRYVSVG 240 (319)
T ss_pred Cch---HHHHHHhh-hccCCCCEEEEec
Confidence 111 12222222 2399999987664
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=39.89 E-value=93 Score=29.43 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=56.5
Q ss_pred CeEEEEcCCCC--hhHHHHHhcCCceEEEecCCCCCCc-------------EEEcCCC---------CCC----C-CCCc
Q 028410 98 SKVLCVSAGAG--HEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPH---------NLP----F-FDEA 148 (209)
Q Consensus 98 ~~iLDiGcG~G--~~~~~la~~~~~~v~~vD~s~~~~~-------------~~~~d~~---------~~~----~-~~~~ 148 (209)
.+|.=||+|+= ..+..++..|+ +|+.+|.+++.++ +..+.+. ++. + .-..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcC
Confidence 57889999863 33333455687 9999999988543 1111110 010 0 1145
Q ss_pred eeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHH
Q 028410 149 FDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (209)
Q Consensus 149 fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l 198 (209)
.|+|+-. +.+.+ -..+++.++.++++|+.. +.++.+ .....++.+.
T Consensus 393 aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~i--lasNTS-sl~i~~la~~ 439 (715)
T PRK11730 393 VDVVVEA-VVENPKVKAAVLAEVEQKVREDTI--LASNTS-TISISLLAKA 439 (715)
T ss_pred CCEEEec-ccCcHHHHHHHHHHHHhhCCCCcE--EEEcCC-CCCHHHHHhh
Confidence 6777653 34444 358899999999999976 444443 2344444443
No 481
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=39.78 E-value=51 Score=21.75 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=20.7
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhHH-HHHh-cCC-ceEEEecCC
Q 028410 86 KHLQGKSLLFNHSKVLCVSAGAGHEVM-AFNS-IGV-ADVTGVELM 128 (209)
Q Consensus 86 ~~l~~~~~~~~~~~iLDiGcG~G~~~~-~la~-~~~-~~v~~vD~s 128 (209)
.........+.+.+||-+||.+|+=.. .++. .+. .+.+||.+.
T Consensus 28 ~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 28 EYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 333334445666899999999996433 2322 222 366776543
No 482
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.72 E-value=74 Score=26.92 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCC--hhHHHHHhcCCceEEEecCCCCCCcE------------E-E----cC-CCCCC----CC--CCcee
Q 028410 97 HSKVLCVSAGAG--HEVMAFNSIGVADVTGVELMDSLPLV------------S-R----AD-PHNLP----FF--DEAFD 150 (209)
Q Consensus 97 ~~~iLDiGcG~G--~~~~~la~~~~~~v~~vD~s~~~~~~------------~-~----~d-~~~~~----~~--~~~fD 150 (209)
-.+|-=||+|+= .++..++..|+ +|+..|++++..+- . . .. ..++. +. -...|
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 357888888732 33334455687 99999999764320 0 0 00 00111 10 13567
Q ss_pred eEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHh
Q 028410 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (209)
Q Consensus 151 ~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~ 199 (209)
+|+-+ +.+.+ -...+++++.+.++|+. ++..+.+ ......+.+..
T Consensus 86 lViEa-vpE~l~vK~~lf~~l~~~~~~~a--IlaSnTS-~l~~s~la~~~ 131 (321)
T PRK07066 86 FIQES-APEREALKLELHERISRAAKPDA--IIASSTS-GLLPTDFYARA 131 (321)
T ss_pred EEEEC-CcCCHHHHHHHHHHHHHhCCCCe--EEEECCC-ccCHHHHHHhc
Confidence 77663 33333 34778899999999987 3555555 33444555433
No 483
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=39.10 E-value=1.7e+02 Score=23.70 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=49.8
Q ss_pred ccCCCCCeEEEEcCCC--ChhHHHHHh-cCCceEEEecCCCCCCcE-------EEcCCCCCC--------CCCCceeeEE
Q 028410 92 SLLFNHSKVLCVSAGA--GHEVMAFNS-IGVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (209)
Q Consensus 92 ~~~~~~~~iLDiGcG~--G~~~~~la~-~~~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~i~ 153 (209)
..+.++.++|-.|++. |.....++. .|. +++.++.++...+. ...+..+.. .....+|+++
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEE
Confidence 4557788999888753 445455555 465 78887766542211 001111111 1234678887
Q ss_pred cccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+.- ...+.+..+.++++|.++.+.
T Consensus 241 ~~~g------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 241 EHVG------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ECCc------HHHHHHHHHHhhcCCEEEEEe
Confidence 6321 234667788999999977664
No 484
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=38.73 E-value=1e+02 Score=26.57 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=51.4
Q ss_pred ccCCCCCeEEEEcC-C-CChhHHHHHhc-C--CceEEEecCCCCCCcE----------------EEcCCCC-CC------
Q 028410 92 SLLFNHSKVLCVSA-G-AGHEVMAFNSI-G--VADVTGVELMDSLPLV----------------SRADPHN-LP------ 143 (209)
Q Consensus 92 ~~~~~~~~iLDiGc-G-~G~~~~~la~~-~--~~~v~~vD~s~~~~~~----------------~~~d~~~-~~------ 143 (209)
..++++.+|+=+|+ | -|..+..+++. | ..+|+++|.++...+. ...|..+ ..
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHH
Confidence 34578889998873 3 55666666663 3 3479999988653221 1112211 00
Q ss_pred --CCCCceeeEEcccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 144 --FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 144 --~~~~~fD~i~~~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.....+|+++... . ....+.+..+.++++|.+++..
T Consensus 251 ~~t~g~g~D~vid~~-g----~~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 251 ELTGGQGFDDVFVFV-P----VPELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HHhCCCCCCEEEEcC-C----CHHHHHHHHHHhccCCeEEEEE
Confidence 1123578776521 0 1346778889999988766554
No 485
>PRK08818 prephenate dehydrogenase; Provisional
Probab=38.73 E-value=93 Score=26.93 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEccc-chhhhCHHHHHHHHH
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAH-LAEALFPSRFVGEME 171 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~~-~~~~~~~~~~l~~~~ 171 (209)
..+|.=||. +|..+..++. ....+|+|+|.+.+. ..+..-.-...|+|+.+- +.. ..++++++.
T Consensus 4 ~~~I~IIGl-~GliGgslA~alk~~~~~~V~g~D~~d~~-------~~~~~~~v~~aDlVilavPv~~---~~~~l~~l~ 72 (370)
T PRK08818 4 QPVVGIVGS-AGAYGRWLARFLRTRMQLEVIGHDPADPG-------SLDPATLLQRADVLIFSAPIRH---TAALIEEYV 72 (370)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHhcCCCEEEEEcCCccc-------cCCHHHHhcCCCEEEEeCCHHH---HHHHHHHHh
Confidence 457888885 3455555544 212389999985221 111110124578887642 222 456666776
Q ss_pred Hh---cccCcEE
Q 028410 172 RT---VKIGGVC 180 (209)
Q Consensus 172 r~---LkpgG~l 180 (209)
.. |+||..+
T Consensus 73 ~~~~~l~~~~iV 84 (370)
T PRK08818 73 ALAGGRAAGQLW 84 (370)
T ss_pred hhhcCCCCCeEE
Confidence 65 6776653
No 486
>PRK10083 putative oxidoreductase; Provisional
Probab=38.66 E-value=1.2e+02 Score=24.98 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=48.5
Q ss_pred cccCCCCCeEEEEcCCC-ChhHHHHHh-c-CCceEEEecCCCCCCcE-------EEcCCCCCC----CC--CCceeeEEc
Q 028410 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-I-GVADVTGVELMDSLPLV-------SRADPHNLP----FF--DEAFDVAFT 154 (209)
Q Consensus 91 ~~~~~~~~~iLDiGcG~-G~~~~~la~-~-~~~~v~~vD~s~~~~~~-------~~~d~~~~~----~~--~~~fD~i~~ 154 (209)
....+++.+||=.|+|. |..+..+++ . |...++++|.+++..+. ...+..+.. +. ...+|+++.
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIID 234 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEE
Confidence 34567888999998541 223333444 3 76568888876552221 011111111 01 112456654
Q ss_pred ccchhhhCHHHHHHHHHHhcccCcEEEEEE
Q 028410 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 155 ~~~~~~~~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.. .....+.+..+.|+++|+++.+-
T Consensus 235 ~~-----g~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 235 AA-----CHPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CC-----CCHHHHHHHHHHhhcCCEEEEEc
Confidence 21 11345788889999999987653
No 487
>PRK08324 short chain dehydrogenase; Validated
Probab=38.32 E-value=1.3e+02 Score=28.21 Aligned_cols=89 Identities=19% Similarity=0.096 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCCC-------------CcEEEcCCCCCC-----C-----CCCc
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSL-------------PLVSRADPHNLP-----F-----FDEA 148 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~-------------~~~~~~d~~~~~-----~-----~~~~ 148 (209)
.+.++|-.|++ |..+..+++ .|. +|+.+|.++.. +.++..|+.+.. + ..+.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45788888864 455555544 476 89999987642 225667776532 1 1246
Q ss_pred eeeEEcccc-hh-----hh--------------CHHHHHHHHHHhccc---CcEEEEEEec
Q 028410 149 FDVAFTAHL-AE-----AL--------------FPSRFVGEMERTVKI---GGVCMVLMEE 186 (209)
Q Consensus 149 fD~i~~~~~-~~-----~~--------------~~~~~l~~~~r~Lkp---gG~lil~~~~ 186 (209)
+|+++.+.- .. .. -...+++.+.+.+++ ||.+++..+.
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~ 559 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASK 559 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Confidence 899987521 10 00 124456667777776 6887766543
No 488
>PRK12744 short chain dehydrogenase; Provisional
Probab=37.92 E-value=2e+02 Score=22.62 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCChhHHHHHh----cCCceEEEecCCCC------------------CCcEEEcCCCCCC-----C-----
Q 028410 97 HSKVLCVSAGAGHEVMAFNS----IGVADVTGVELMDS------------------LPLVSRADPHNLP-----F----- 144 (209)
Q Consensus 97 ~~~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~------------------~~~~~~~d~~~~~-----~----- 144 (209)
+.++|=.|++ |..+..+++ .|. +++.++.+.. .+.++..|+.+.. +
T Consensus 8 ~k~vlItGa~-~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAGGA-KNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5678888854 456666554 465 5555543211 2335677776532 0
Q ss_pred CCCceeeEEcccch------hhhC--------------HHHHHHHHHHhcccCcEEEEEE
Q 028410 145 FDEAFDVAFTAHLA------EALF--------------PSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 145 ~~~~fD~i~~~~~~------~~~~--------------~~~~l~~~~r~LkpgG~lil~~ 184 (209)
.-+..|+++.+.-. .... +..+++.+.+.++++|.+++..
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ 145 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLV 145 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEe
Confidence 11467888875211 1111 1234567777777788776654
No 489
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=37.89 E-value=42 Score=26.15 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCC-C-hhHHHHHhcCCceEEEecCCC
Q 028410 96 NHSKVLCVSAGA-G-HEVMAFNSIGVADVTGVELMD 129 (209)
Q Consensus 96 ~~~~iLDiGcG~-G-~~~~~la~~~~~~v~~vD~s~ 129 (209)
.+.+|+=+|||. | ..+..|+..|.++++.+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 467899999983 2 344445556888999999873
No 490
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=37.74 E-value=2.4e+02 Score=24.53 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=48.5
Q ss_pred eEEEEcCCCChhHHHHHh----cCCceEEEecCCCCC---------CcEEEcCCCCCC----CCCCceeeEEcccchhhh
Q 028410 99 KVLCVSAGAGHEVMAFNS----IGVADVTGVELMDSL---------PLVSRADPHNLP----FFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 99 ~iLDiGcG~G~~~~~la~----~~~~~v~~vD~s~~~---------~~~~~~d~~~~~----~~~~~fD~i~~~~~~~~~ 161 (209)
+|+=+|+ |..+..+++ .|. +++.+|.+++. +.++.+|..+.. ..-..+|.+++..-..
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~-- 76 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD-- 76 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh--
Confidence 5666666 688888877 254 89999987652 346678876532 1235688887732111
Q ss_pred CHHHHHHHHHHhcccCcEEEEEEec
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLMEE 186 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~~~ 186 (209)
+....+....+.+.|.-.++..+..
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 1233344555666566555554433
No 491
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=37.62 E-value=92 Score=26.70 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCC----hhHHHHHhc-CCceEEEecCCCCCC
Q 028410 95 FNHSKVLCVSAGAG----HEVMAFNSI-GVADVTGVELMDSLP 132 (209)
Q Consensus 95 ~~~~~iLDiGcG~G----~~~~~la~~-~~~~v~~vD~s~~~~ 132 (209)
...-.++-.|.||| ..++++.++ +..+|+++|+....+
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~ 252 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIV 252 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCccee
Confidence 55667888899988 456777774 456999999987643
No 492
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=37.52 E-value=83 Score=21.81 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhcccc
Q 028410 163 PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSS 203 (209)
Q Consensus 163 ~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~~ 203 (209)
+..+++++.+.|+||...++..-. ......+.+.|++.+
T Consensus 41 ~d~~~~ev~~~L~~GssAl~~lv~--~~~~d~v~~~l~~~g 79 (102)
T PF06897_consen 41 DDEFIKEVGEALKPGSSALFLLVD--EATEDKVDAALRKFG 79 (102)
T ss_pred CHHHHHHHHhhcCCCceEEEEEec--cCCHHHHHHHHHhcC
Confidence 567899999999999877666554 334555566665554
No 493
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=37.19 E-value=1.6e+02 Score=22.43 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=21.5
Q ss_pred CCCceeeEEcccchhhhCHHHHHH-HHHHhcccCcEEEEEE
Q 028410 145 FDEAFDVAFTAHLAEALFPSRFVG-EMERTVKIGGVCMVLM 184 (209)
Q Consensus 145 ~~~~fD~i~~~~~~~~~~~~~~l~-~~~r~LkpgG~lil~~ 184 (209)
+....|++++.+ +..+-. .....|||||.+++-.
T Consensus 63 ~~~~~D~lva~~------~~~~~~~~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 63 QIYEPDYVIVQD------PTLLDSVDVTSGLKKDGIIIINT 97 (181)
T ss_pred cCCCCCEEEEcC------HHHhcchhHhcCcCCCcEEEEEC
Confidence 456889998833 222211 3467799999976553
No 494
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=37.19 E-value=1.4e+02 Score=26.14 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=37.4
Q ss_pred CeEEEEcCCCChhHHHHH----hcCCceEEEecCCCC-----------CCcEEEcCCCCCCC---CCCceeeEEcc
Q 028410 98 SKVLCVSAGAGHEVMAFN----SIGVADVTGVELMDS-----------LPLVSRADPHNLPF---FDEAFDVAFTA 155 (209)
Q Consensus 98 ~~iLDiGcG~G~~~~~la----~~~~~~v~~vD~s~~-----------~~~~~~~d~~~~~~---~~~~fD~i~~~ 155 (209)
.+||=+||| ..+...+ +.+..+|+..|.+.. .++..+.|+.+.+- --..+|+|++.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 578999995 5555544 445569999999954 24577888877531 01345999884
No 495
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=36.59 E-value=40 Score=29.69 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCChhHHHHHh---cCCceEEEecCCCCCCcEEEcCCC--------------CCCC-----CCCceeeEE
Q 028410 96 NHSKVLCVSAGAGHEVMAFNS---IGVADVTGVELMDSLPLVSRADPH--------------NLPF-----FDEAFDVAF 153 (209)
Q Consensus 96 ~~~~iLDiGcG~G~~~~~la~---~~~~~v~~vD~s~~~~~~~~~d~~--------------~~~~-----~~~~fD~i~ 153 (209)
+.++|-=||. |+.+..++. .++ +|+++|+++..++-+..... .+.+ .-...|+++
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~-~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvi 81 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSR-QVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYI 81 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCC-EEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEE
Confidence 4467777755 567766665 254 99999999986653221111 0111 113567776
Q ss_pred cc-cch----hhhCH---HHHHHHHHHhcccCcEEEEEE
Q 028410 154 TA-HLA----EALFP---SRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 154 ~~-~~~----~~~~~---~~~l~~~~r~LkpgG~lil~~ 184 (209)
.+ ... ...+. ....+.+.+.|++|..+++..
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence 53 111 11122 334567888898877654443
No 496
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=36.57 E-value=41 Score=28.10 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=34.2
Q ss_pred CCceeeEEccc-chhhhCHHHHHHHHHHhcccCcEEEEEEecC----CcccHHH----HHHHhcccccc
Q 028410 146 DEAFDVAFTAH-LAEALFPSRFVGEMERTVKIGGVCMVLMEEC----AGREIKQ----IVELFRTSSFT 205 (209)
Q Consensus 146 ~~~fD~i~~~~-~~~~~~~~~~l~~~~r~LkpgG~lil~~~~~----~~~~~~~----~~~l~~~~~~~ 205 (209)
.+.||+|+.++ ..+.+.|. +.++++|||.+++-+..- ..++... +.++.+.+|+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~ 283 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFK 283 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCc
Confidence 47899998754 34433554 778899999977766421 2223322 45566666663
No 497
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=36.02 E-value=1.1e+02 Score=27.42 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=45.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHh----cCCceEE------EecCCCCCCcEEEcCC---CCCCCCCCceeeEEcccchhhh
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNS----IGVADVT------GVELMDSLPLVSRADP---HNLPFFDEAFDVAFTAHLAEAL 161 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~----~~~~~v~------~vD~s~~~~~~~~~d~---~~~~~~~~~fD~i~~~~~~~~~ 161 (209)
-.+.+|+=||||+ .+..-+. .|. +|+ ++|.+...-+....|- .++.-.-...|+|++.--+.
T Consensus 34 LkgKtIaIIGyGS--qG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-- 108 (487)
T PRK05225 34 LKGKKIVIVGCGA--QGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-- 108 (487)
T ss_pred hCCCEEEEEccCH--HHHHHhCCCccccc-eeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH--
Confidence 3579999999984 4443333 254 444 3333333222111110 01111125678887732122
Q ss_pred CHHHHHHHHHHhcccCcEEEEEE
Q 028410 162 FPSRFVGEMERTVKIGGVCMVLM 184 (209)
Q Consensus 162 ~~~~~l~~~~r~LkpgG~lil~~ 184 (209)
....+..++...||||..+.+..
T Consensus 109 ~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 109 QHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHHHHHHHHHhhCCCCCEEEecC
Confidence 24556689999999999977664
No 498
>PRK08223 hypothetical protein; Validated
Probab=35.80 E-value=44 Score=27.84 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCC--ChhHHHHHhcCCceEEEecCCCC
Q 028410 96 NHSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDS 130 (209)
Q Consensus 96 ~~~~iLDiGcG~--G~~~~~la~~~~~~v~~vD~s~~ 130 (209)
...+||=+|||. +..+..|+..|.++++-+|.+.-
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 468999999993 34566677779999999998754
No 499
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=35.75 E-value=44 Score=30.87 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCCCChhHHHHHhcCC---ceEEEecCCCCCCcEEEcCCCCCCCCCCceeeEEcc
Q 028410 95 FNHSKVLCVSAGAGHEVMAFNSIGV---ADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTA 155 (209)
Q Consensus 95 ~~~~~iLDiGcG~G~~~~~la~~~~---~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~i~~~ 155 (209)
.+..+|| +.||+|.-+-.+.+... -+=.++| .++.+.++.+.+-..+.+|+|++.
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva~kIkk~Lke~GI~-----veV~~~~Vsev~s~~~~aDIIVtt 561 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMKMKIKKYLDKRGIP-----IIMDSCAVNDYKGKLETIDIIVCS 561 (602)
T ss_pred CcccEEE-EECCCCchHHHHHHHHHHHHHHHcCCC-----eEEEEechHhCcccCCCCCEEEEc
Confidence 5667887 67888876666654210 0111222 346677777776556678999984
No 500
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=35.65 E-value=88 Score=26.27 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=34.6
Q ss_pred ceeeEEcccchhhh-CHHHHHHHHHHhcccCcEEEEEEecCCcccHHHHHHHhccc
Q 028410 148 AFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (209)
Q Consensus 148 ~fD~i~~~~~~~~~-~~~~~l~~~~r~LkpgG~lil~~~~~~~~~~~~~~~l~~~~ 202 (209)
.||.++... ..+. ..+..+.++.+.+.|||.++++-.. ....+++.+.|..+
T Consensus 37 ~~d~~l~~~-pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~--~~g~~s~~k~l~~~ 89 (300)
T COG2813 37 DFDAVLLYW-PKHKAEAEFQLAQLLARLPPGGEIVVVGEK--RDGVRSAEKMLEKY 89 (300)
T ss_pred CCCEEEEEc-cCchHHHHHHHHHHHhhCCCCCeEEEEecc--cchHHHHHHHHHHh
Confidence 789998732 2223 4677889999999999996555433 44555555555543
Done!