Query 028411
Match_columns 209
No_of_seqs 160 out of 1208
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03822 lplA lipoate-protein 100.0 5.1E-45 1.1E-49 324.5 14.8 178 1-202 48-234 (338)
2 TIGR00545 lipoyltrans lipoyltr 100.0 1.2E-44 2.7E-49 320.7 13.8 183 1-204 47-233 (324)
3 PRK14061 unknown domain/lipoat 100.0 4.5E-44 9.8E-49 333.4 15.4 178 1-202 272-458 (562)
4 COG0095 LplA Lipoate-protein l 100.0 8.1E-43 1.8E-47 298.9 11.7 183 1-205 48-239 (248)
5 KOG3159 Lipoate-protein ligase 100.0 5.3E-32 1.1E-36 232.9 9.0 160 2-167 56-223 (336)
6 PF03099 BPL_LplA_LipB: Biotin 99.8 5.1E-19 1.1E-23 135.0 12.3 111 2-114 4-125 (125)
7 PRK14348 lipoate-protein ligas 98.5 2.3E-06 4.9E-11 72.5 12.7 141 10-165 64-215 (221)
8 PRK14344 lipoate-protein ligas 98.3 1.4E-05 3.1E-10 67.7 13.4 134 16-164 79-221 (223)
9 PRK14343 lipoate-protein ligas 98.3 2E-05 4.3E-10 67.2 12.7 136 16-166 71-220 (235)
10 PRK14345 lipoate-protein ligas 98.2 3.1E-05 6.7E-10 66.1 12.5 137 16-167 67-218 (234)
11 TIGR00214 lipB lipoate-protein 98.2 5E-05 1.1E-09 62.7 12.9 130 18-164 43-179 (184)
12 PRK14342 lipoate-protein ligas 98.2 6.8E-05 1.5E-09 63.2 13.7 136 16-167 61-206 (213)
13 COG0321 LipB Lipoate-protein l 98.1 7.3E-05 1.6E-09 62.9 13.1 137 16-167 67-213 (221)
14 PRK14341 lipoate-protein ligas 98.1 5.6E-05 1.2E-09 63.7 11.9 134 15-164 60-207 (213)
15 PRK14349 lipoate-protein ligas 97.9 0.00036 7.7E-09 59.1 13.2 138 15-167 55-207 (220)
16 PRK14346 lipoate-protein ligas 97.9 0.00025 5.5E-09 60.3 11.8 135 15-165 57-225 (230)
17 PRK14347 lipoate-protein ligas 97.8 0.00072 1.6E-08 56.9 13.6 134 15-164 58-204 (209)
18 PRK08330 biotin--protein ligas 96.6 0.034 7.4E-07 47.2 10.9 80 20-107 31-121 (236)
19 PRK08477 biotin--protein ligas 95.5 0.34 7.4E-06 40.8 11.9 71 19-96 30-113 (211)
20 KOG0325 Lipoyltransferase [Ene 95.3 0.51 1.1E-05 39.9 12.1 148 10-167 67-215 (226)
21 PTZ00275 biotin-acetyl-CoA-car 94.2 0.15 3.2E-06 44.8 6.7 66 22-94 55-138 (285)
22 PTZ00276 biotin/lipoate protei 93.7 0.28 6E-06 42.1 7.2 72 19-95 35-118 (245)
23 PRK05935 biotin--protein ligas 91.5 0.62 1.4E-05 38.5 6.3 71 19-95 32-113 (190)
24 TIGR00121 birA_ligase birA, bi 90.8 0.77 1.7E-05 38.9 6.4 70 19-95 28-108 (237)
25 PRK11886 bifunctional biotin-- 89.2 0.96 2.1E-05 40.0 5.9 70 19-95 105-187 (319)
26 COG0340 BirA Biotin-(acetyl-Co 88.5 1.3 2.8E-05 37.9 6.0 70 19-95 24-105 (238)
27 PRK13325 bifunctional biotin-- 80.2 3.8 8.2E-05 39.7 5.7 69 19-94 112-192 (592)
28 PRK06955 biotin--protein ligas 77.9 8 0.00017 34.0 6.7 73 20-95 68-152 (300)
29 TIGR02617 tnaA_trp_ase tryptop 56.1 7.4 0.00016 36.6 1.9 25 12-38 339-363 (467)
30 PF13986 DUF4224: Domain of un 41.9 19 0.0004 23.0 1.6 17 11-27 21-37 (47)
31 PF02402 Lysis_col: Lysis prot 40.8 16 0.00034 23.2 1.0 19 11-33 16-34 (46)
32 PF06974 DUF1298: Protein of u 33.4 71 0.0015 25.0 4.1 37 30-66 114-150 (153)
33 PRK13237 tyrosine phenol-lyase 33.1 25 0.00053 33.2 1.5 25 12-37 330-354 (460)
34 KOG1536 Biotin holocarboxylase 30.7 1.7E+02 0.0036 28.6 6.5 90 28-118 428-530 (649)
35 PF12824 MRP-L20: Mitochondria 30.0 32 0.00069 27.9 1.5 20 184-203 81-100 (164)
36 PF04017 DUF366: Domain of unk 25.1 3.1E+02 0.0068 22.6 6.5 33 81-113 106-138 (183)
37 PF02415 Chlam_PMP: Chlamydia 22.1 42 0.00092 18.7 0.7 9 25-33 19-27 (28)
38 PF12122 DUF3582: Protein of u 21.1 82 0.0018 23.3 2.2 19 11-29 17-35 (101)
39 PRK09184 acyl carrier protein; 21.1 1.9E+02 0.0041 20.7 4.1 42 151-194 6-47 (89)
No 1
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=100.00 E-value=5.1e-45 Score=324.50 Aligned_cols=178 Identities=22% Similarity=0.302 Sum_probs=154.1
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHhHHhHhcCc-ccccc
Q 028411 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGI-ADFQL 79 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l~~~~~~gv-~~~~~ 79 (209)
+.++|++|||+++|+++||+||||+|||||||||+||+|||++.+... .++..++++|+++|+.| |+ +.+.
T Consensus 48 r~Qn~~~Evn~~~~~~~gI~vvRR~SGGGAVyhD~Gnl~~s~i~~~~~-~~~~~~~~~ii~aL~~l------Gi~a~~~- 119 (338)
T PRK03822 48 RAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPE-YDKTISTSIVLNALNSL------GVSAEAS- 119 (338)
T ss_pred CCCCHHHHhCHHHHHHcCCcEEEECCCCceEEEcCCCcEEEEEeCCCc-cCHHHHHHHHHHHHHHc------CCceeEC-
Confidence 368999999999999999999999999999999999999999998644 35666789999999999 88 5565
Q ss_pred CcCcEEeC----CeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCC---chH
Q 028411 80 RENDYVFG----NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLP---RTD 151 (209)
Q Consensus 80 ~~~Di~v~----grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~---~~~ 151 (209)
++|||+++ |||||||||++.+++++||||||+++|++.|. +|+++++++.+|+++|+++|||||+++++ .+.
T Consensus 120 ~rnDi~v~~~~g~kKisGsAq~~~~~~~l~HGTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~~~~e~ 199 (338)
T PRK03822 120 GRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLPGITHEQ 199 (338)
T ss_pred CCccEEEecCCCCcEEEEEeeeeeCCeEEEEEEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCCCCCHHH
Confidence 79999995 69999999999999999999999999999997 99999999999999999999999999886 345
Q ss_pred HHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccc
Q 028411 152 FIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQP 202 (209)
Q Consensus 152 ~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (209)
+.+.|.++|.+.|+.+ ..+|.||++||+.+.++..
T Consensus 200 ~~~~l~~~f~~~~~~~----------------~~~~~lt~~e~~~i~~l~~ 234 (338)
T PRK03822 200 VCEAITEAFFAHYGER----------------VEAEVISPDKTPDLPGFAE 234 (338)
T ss_pred HHHHHHHHHHHHhCCC----------------CCccccCHHHHHHHHHHHH
Confidence 5555555665555443 1457888999988887765
No 2
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=100.00 E-value=1.2e-44 Score=320.68 Aligned_cols=183 Identities=26% Similarity=0.379 Sum_probs=159.2
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCC--CCCCCchhHHHHHHHHHhHHhHhcCc-ccc
Q 028411 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDD--VPGVQPFPRSIMSWSGLLYNQVFKGI-ADF 77 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~--~~~~~~~~~~i~~~L~~l~~~~~~gv-~~~ 77 (209)
+.++|+.|||+++|+++||+||||+|||||||||+|++|||+++|.+. +.+|..++++|+++|+.+ |+ +.+
T Consensus 47 ~~Q~~~~ev~~~~~~~~gi~vvRR~sGGGaVyhD~g~l~~s~i~~~~~~~~~~~~~~~~~i~~aL~~l------Gi~a~~ 120 (324)
T TIGR00545 47 RNQNTWAEVNLKELEEDNVNLFRRFSGGGAVFHDLGNICFSFITPKDGKEFENAKIFTRNVIKALNSL------GVEAEL 120 (324)
T ss_pred CCCCHHHHhCHHHHHHcCCeEEEECCCCceEEEcCCceEEEEEEcCCccchhhHHHHHHHHHHHHHHh------CCCeEE
Confidence 368999999999999999999999999999999999999999999743 346788999999999999 87 566
Q ss_pred ccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCCchHHHHHH
Q 028411 78 QLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKT 156 (209)
Q Consensus 78 ~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l 156 (209)
. ++|||+++|||||||||++.+++++||||||+++|++.|. +|++|++|+.+|+++|+++||+||+++++. ...+++
T Consensus 121 ~-~rnDl~v~gkKisGsAq~~~~~~~l~HGtlL~~~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~-~~~e~~ 198 (324)
T TIGR00545 121 S-GRNDLVVDGRKISGSAYYITKDRGFHHGTLLFDADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPN-ITTEQF 198 (324)
T ss_pred C-CCceEEECCEEEEEEeeeeeCCEEEEEEEEEccCCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCC-CCHHHH
Confidence 6 7999999999999999999999999999999999999997 999999999999999999999999999874 567777
Q ss_pred HHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccccc
Q 028411 157 TEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEI 204 (209)
Q Consensus 157 ~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (209)
.++|.+.|.-.. .. .++|.||+++|+.++++..|+
T Consensus 199 ~~~l~~~f~~~~---~~----------~~~~~lt~~e~~~~~~l~~~k 233 (324)
T TIGR00545 199 LEEMTQAFFTYT---ER----------VETYILDENKTPDVEKRAKER 233 (324)
T ss_pred HHHHHHHHHhhC---CC----------CceEecCHHHHHHHHHHHHHh
Confidence 777776664210 01 155889999999998876543
No 3
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=333.36 Aligned_cols=178 Identities=22% Similarity=0.305 Sum_probs=153.9
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHhHHhHhcCc-ccccc
Q 028411 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGI-ADFQL 79 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l~~~~~~gv-~~~~~ 79 (209)
+.+||++|||+++|+++||+||||+|||||||||.||+||||+++... .++..+.++|+++|+.+ |+ +.+.
T Consensus 272 rnQN~~~EVNl~~~~~~gI~vVRR~SGGGAVYHD~GNlnfSfi~~~~~-~~~~~~~~~Ii~aL~~L------GI~ae~s- 343 (562)
T PRK14061 272 RAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPE-YDKTISTSIVLNALNAL------GVSAEAS- 343 (562)
T ss_pred CCCCchhhhCHHHHHhcCCcEEEECCCCcEEEEcCCceEEEEEeCCcc-cchHHHHHHHHHHHHHc------CCCeEEC-
Confidence 368999999999999999999999999999999999999999998654 36777889999999999 88 5676
Q ss_pred CcCcEEe----CCeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCC---chH
Q 028411 80 RENDYVF----GNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLP---RTD 151 (209)
Q Consensus 80 ~~~Di~v----~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~---~~~ 151 (209)
++|||++ +|||||||||++.+++++||||||+|+|++.|. +|+++++|+.+|+++|+++|||||+++++ .+.
T Consensus 344 gRNDI~v~~~~~GkKISGsAq~~~~~~~lhHGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~~it~e~ 423 (562)
T PRK14061 344 GRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGIPHEQ 423 (562)
T ss_pred CCccEEEeeCCCCcEEEEEeEEEeCCeEEEEEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCCCCCHHH
Confidence 7999999 699999999999999999999999999999997 99999999999999999999999999986 344
Q ss_pred HHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccc
Q 028411 152 FIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQP 202 (209)
Q Consensus 152 ~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (209)
+.+.|.++|.+.|+.+ .+.|.|+++||+.++++..
T Consensus 424 f~~~L~~~f~~~~g~~----------------~~~~~Lt~~e~~~i~~l~~ 458 (562)
T PRK14061 424 VCEAITEAFFAHYGER----------------VEAEIISPDKTPDLPNFAE 458 (562)
T ss_pred HHHHHHHHHHHHcCCC----------------CccccCCHHHHHHHHHHHH
Confidence 4555555554444432 1447888999888877664
No 4
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=100.00 E-value=8.1e-43 Score=298.86 Aligned_cols=183 Identities=25% Similarity=0.303 Sum_probs=159.9
Q ss_pred CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCC-----CCCCchhHHHHHHHHHhHHhHhcCcc
Q 028411 1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDV-----PGVQPFPRSIMSWSGLLYNQVFKGIA 75 (209)
Q Consensus 1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~-----~~~~~~~~~i~~~L~~l~~~~~~gv~ 75 (209)
+.++++.|||+++++++||+||||+|||||||||.|++|||+++|.+.. ..|+.++++++++|+.+ |+.
T Consensus 48 ~~q~~~~Ev~~~~~~~~~i~vvRR~sGGGaV~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l------gv~ 121 (248)
T COG0095 48 RFQNTLPEVNLEYVKEDGIPVVRRPSGGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRAL------GVE 121 (248)
T ss_pred CccchHhHhhHHHHHHcCCcEEEEcCCCceEEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHc------CCC
Confidence 4578999999999999999999999999999999999999999998752 14667788899999998 886
Q ss_pred -ccccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCC--chH
Q 028411 76 -DFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLP--RTD 151 (209)
Q Consensus 76 -~~~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~--~~~ 151 (209)
.+|.++|||+++||||||+||++.+++++|||||+++.|++.|. +|++|++|+++|+++|++++|+||+++.+ .++
T Consensus 122 ~~~~~~~nDl~v~gkKisG~Aq~~~~~~~l~hgtll~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~~~~~~~e 201 (248)
T COG0095 122 GAECPGRNDLVVDGKKISGSAQRRTKGRILHHGTLLLDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEELLKISVEE 201 (248)
T ss_pred eeccCCCcceeEcCcEEeeHHHHhhCCcEEEEEEEEEeCCHHHHHHHhCCChhhhhhcccccHHHhCcchhhccCCCHHH
Confidence 88889999999999999999999999999999999999999997 99999999999999999999999999832 455
Q ss_pred HHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhcccccc
Q 028411 152 FIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEII 205 (209)
Q Consensus 152 ~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 205 (209)
+.+.+.++|.+.++++ .+.+.||+++|+.+.++..|..
T Consensus 202 ~~~~l~~~f~~~~~~~----------------~~~~~lt~~e~~~~~~~~~~~~ 239 (248)
T COG0095 202 FLEALLEAFFKVLGVE----------------LEEYELTPEELELAEKLAEEKY 239 (248)
T ss_pred HHHHHHHHHHHhhCCC----------------ccccCCCHHHHHHHHHHHHHHh
Confidence 6666666666665532 2568999999999999887754
No 5
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism]
Probab=99.97 E-value=5.3e-32 Score=232.94 Aligned_cols=160 Identities=21% Similarity=0.303 Sum_probs=129.6
Q ss_pred CCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHhHHhHhcCc-cccccC
Q 028411 2 LRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGI-ADFQLR 80 (209)
Q Consensus 2 ~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l~~~~~~gv-~~~~~~ 80 (209)
-+|||.|+|+.+|++++|+++||.|||||||||.||||||++++++.+ +-...+..|+.||... .. ++ .... .
T Consensus 56 hQNpw~E~nv~~~~e~~I~liRR~SGGGTVyHDlGNLN~S~lt~re~~-~r~~nlk~iv~ALn~~--e~--~v~v~~n-q 129 (336)
T KOG3159|consen 56 HQNPWQEANVALLRENNIPLIRRFSGGGTVYHDLGNLNYSLLTNREKF-DRKENLKIIVRALNGD--EP--FVKVNLN-Q 129 (336)
T ss_pred CCCcceeccHHHHHhcCCeEEEEecCCceEEEecCceeEEEEccHHHc-CcccchHHHHHHhccC--Cc--eEeeccc-c
Confidence 479999999999999999999999999999999999999999998875 3445677888888732 00 22 1222 4
Q ss_pred cCcEEeC--CeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCcccccccccc-ccccccccCC---chHHH
Q 028411 81 ENDYVFG--NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTE-FICRMNEYLP---RTDFI 153 (209)
Q Consensus 81 ~~Di~v~--grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~-~vt~L~e~l~---~~~~~ 153 (209)
|.|+.++ +|||||||+++.++..+||+|||++.|++.|. +|++|.....+++..|+++ +|.++-+--+ .+.+.
T Consensus 130 R~Di~l~~g~rKiSGtA~kI~r~raYHH~T~L~~aDl~~ls~lL~sp~~~~~s~at~sv~sp~vk~lie~~~~v~~~q~~ 209 (336)
T KOG3159|consen 130 RDDIVLDFGQRKISGTAYKIARNRAYHHCTMLLNADLENLSELLKSPRVNIRSKATSSVRSPRVKNLIEKDDFVNVEQSA 209 (336)
T ss_pred cccceecccCceeccchhhhcCCceeeeEEeEeccchHHHHhhccCCCCCccccccccccchhhhhhhhhcCcccHhHHH
Confidence 7888886 99999999999999999999999999999998 8888887788888888888 7777765433 35556
Q ss_pred HHHHHHHHHHcccC
Q 028411 154 EKTTEAVETYFSVK 167 (209)
Q Consensus 154 e~l~~al~~~f~~~ 167 (209)
-++..++.+.|..+
T Consensus 210 ~av~~~y~~t~~~d 223 (336)
T KOG3159|consen 210 VAVQEEYKKTFKED 223 (336)
T ss_pred HHHHHHHHHHhccc
Confidence 66666666666554
No 6
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.81 E-value=5.1e-19 Score=134.95 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=85.4
Q ss_pred CCChh-hhcchhhhhhCCCCEEEcccCCceeEec-CCceEEEEEEeCCCCC----CCCc-hhHHHHHHHHHhHHhHhc-C
Q 028411 2 LRKPS-ELLEIGSVLRDQVPVMKRFTGGGTVVVD-KGTVFVTLICNKDDVP----GVQP-FPRSIMSWSGLLYNQVFK-G 73 (209)
Q Consensus 2 ~~~~~-~evnld~~~~~gI~vvRR~sGGGaVyhD-~g~l~~Sli~~~~~~~----~~~~-~~~~i~~~L~~l~~~~~~-g 73 (209)
+.+++ +++|.+++++.+++++||.||||+|||+ +|+++||++.+.+... .... ....+..+++.++ .+. +
T Consensus 4 ~~~st~~~~~~~~~~~~~v~v~~rqtgG~~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~ 81 (125)
T PF03099_consen 4 FQDSTKEELNQEELKEGGVPVARRQTGGRRVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEALG--EFGPG 81 (125)
T ss_dssp TBSHHHHHHHHHHHHCTTEEEEEESSSSBEEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHHHH--HTTHT
T ss_pred eECHHHHHHHHhcCccCCEEEEEEeeCCcceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHHhh--hhccc
Confidence 46777 8999999999999999999999999999 7999999999976521 1111 2333344444442 111 2
Q ss_pred c-ccccc--CcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeeccc
Q 028411 74 I-ADFQL--RENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYA 114 (209)
Q Consensus 74 v-~~~~~--~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d 114 (209)
. ...|. .+|||.+++|||+|++|++.++..++|++|.++.|
T Consensus 82 ~~~~~~~~kw~nDi~~~~kKi~Gil~~~~~~~~~~~~~igig~N 125 (125)
T PF03099_consen 82 EPGIDCFIKWPNDIYVNGKKIAGILQERRRGGILHHGSIGIGIN 125 (125)
T ss_dssp TTTSSEEEETTTEEEETTEEEEEEEEEEETTEEEEEEEEESSEE
T ss_pred cCCCceEEeCCCCccCCCcEEEEEeEeeeCCcEEEEEEEEEecC
Confidence 2 23333 68999999999999999999999999999999875
No 7
>PRK14348 lipoate-protein ligase B; Provisional
Probab=98.52 E-value=2.3e-06 Score=72.48 Aligned_cols=141 Identities=9% Similarity=0.053 Sum_probs=93.7
Q ss_pred chhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC-CCCc----hhHHHHHHHHHhHHhHhcCccccc-cCcCc
Q 028411 10 EIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP-GVQP----FPRSIMSWSGLLYNQVFKGIADFQ-LREND 83 (209)
Q Consensus 10 nld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~-~~~~----~~~~i~~~L~~l~~~~~~gv~~~~-~~~~D 83 (209)
+.+.+++.|++|++=.=||+..||.||++-.=.|++-.... +.+. +-+.+++.|..+ |+..+. .+.-.
T Consensus 64 ~~~~l~~~~~~v~~t~RGG~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~lE~~vI~~l~~~------gi~~~~~~~~~G 137 (221)
T PRK14348 64 GEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPILNLEEFGLGLKEYVHLLEEAVIRVCASY------GVVAGRLEKATG 137 (221)
T ss_pred ChhhhcccCCcEEEeCCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHc------CCceeecCCCCC
Confidence 34557788999999999999999999998777777654421 2222 234445555555 763332 35678
Q ss_pred EEeC-----CeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCchHHHHHHHH
Q 028411 84 YVFG-----NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTE 158 (209)
Q Consensus 84 i~v~-----grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~~ 158 (209)
++++ +|||+-..-+.+++...|-=+|=++.|+..+..+.+ -.+.. ..||+|.+.++.+..++++++
T Consensus 138 VWv~~~~~~~~KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~~IvP--CGl~~-------~~vTSl~~~~g~~~~~~~v~~ 208 (221)
T PRK14348 138 VWLEGDTSRARKICAIGVRSSHYVTMHGLALNVNTDLRYFSYIHP--CGFID-------KGVTSLQQELGHSIDMAEVKE 208 (221)
T ss_pred EEecCCCCCCCcEEEEeEEeccceeecceEEEecCChHHhccCcc--CCCCC-------CcEEeeHHHhCCCCCHHHHHH
Confidence 9997 589999999988765544438888888766554433 22222 247888766665556666666
Q ss_pred HHHHHcc
Q 028411 159 AVETYFS 165 (209)
Q Consensus 159 al~~~f~ 165 (209)
.|.+.|.
T Consensus 209 ~l~~~f~ 215 (221)
T PRK14348 209 RLGRELL 215 (221)
T ss_pred HHHHHHH
Confidence 6666653
No 8
>PRK14344 lipoate-protein ligase B; Provisional
Probab=98.35 E-value=1.4e-05 Score=67.69 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=86.5
Q ss_pred hCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCccccc-cCcCcEEeCCe
Q 028411 16 RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGIADFQ-LRENDYVFGNR 89 (209)
Q Consensus 16 ~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv~~~~-~~~~Di~v~gr 89 (209)
+.++++++=.=||...||+||++-.=.|++-.... +.+.| -+.+++.|+.+ |+..+. .+.--+++++|
T Consensus 79 ~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~ii~~l~~~------gi~~~~~~~~~GVWv~~~ 152 (223)
T PRK14344 79 NPPADVFRIDRGGEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADL------GIDGERLDGLTGVWIGNK 152 (223)
T ss_pred cCCCcEEEcCCCceeeEECCCcEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHc------CCceeecCCCCcEEcCCC
Confidence 46899999999999999999998877777755422 22222 34444455555 663332 35678899999
Q ss_pred EeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCC---chHHHHHHHHHHHHHc
Q 028411 90 KFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLP---RTDFIEKTTEAVETYF 164 (209)
Q Consensus 90 KIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~---~~~~~e~l~~al~~~f 164 (209)
||+-..-+.+++...|--+|=++.|+.-+..+.+ -.+..+ .||+|+++.. .++..+.+.+.|.+.|
T Consensus 153 KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~~IvP--CGl~~~-------~vTSl~~~~~~~~~~~v~~~l~~~f~~~f 221 (223)
T PRK14344 153 KVASIGIGCRRWITQHGFSLNVDCDLEGFNKIVP--CGLEGC-------QVGRLSDWIPGLNIKEVKPLLKKSLQERF 221 (223)
T ss_pred eEEEEeEeEecceeecceEEecCCCccccCcEEc--CCCCCC-------cEeeHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 9999999988865554448888888765554433 233332 3677776543 2334444555555444
No 9
>PRK14343 lipoate-protein ligase B; Provisional
Probab=98.27 E-value=2e-05 Score=67.24 Aligned_cols=136 Identities=11% Similarity=0.043 Sum_probs=88.2
Q ss_pred hCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCccc-cccCcCcEEeC--
Q 028411 16 RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGIAD-FQLRENDYVFG-- 87 (209)
Q Consensus 16 ~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv~~-~~~~~~Di~v~-- 87 (209)
..|++|++=.=||...||.||++-.=.|++-.... +.+.+ -+.+++.|..+ |+.. ...+.--++++
T Consensus 71 ~~~i~v~~tdRGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~vI~~l~~~------gi~~~~~~~~~GVwv~~~ 144 (235)
T PRK14343 71 DSGIPLVKVDRGGQITYHGPGQVVAYLLLDLRRRKLMVRELVTRIEQAVIDTLAAY------NLASERKAGAPGIYVASG 144 (235)
T ss_pred cCCCCEEEeCCCCceeEeCCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHc------CCceeecCCCCeEEEeCC
Confidence 45899999999999999999998777777754421 22222 24445555555 6633 22345678887
Q ss_pred ---CeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccC---CchHHHHHHHHHHH
Q 028411 88 ---NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYL---PRTDFIEKTTEAVE 161 (209)
Q Consensus 88 ---grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l---~~~~~~e~l~~al~ 161 (209)
++||+-..-+.+++.-.|-=+|=++.|+.-+..+.+ -.+..+ .||+|+++. +.+...+.|.+.|.
T Consensus 145 ~~~~~KIaaIGv~v~r~vT~HG~ALNv~~DL~~F~~I~P--CGl~~~-------~vTSL~~lg~~~~~~~v~~~l~~~f~ 215 (235)
T PRK14343 145 PHQGAKIAALGLKIRNGCSYHGLSLNVKMDLRPFLAINP--CGYAGL-------ETVDMASLGVAADWADVAQTLARRLI 215 (235)
T ss_pred CCCCCeEEEEeeeeecceeecccEEEeCCCchhhCcEEC--CCCCCC-------cEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence 899999999988865544438888888877664443 333333 367775542 23445555555666
Q ss_pred HHccc
Q 028411 162 TYFSV 166 (209)
Q Consensus 162 ~~f~~ 166 (209)
+.|..
T Consensus 216 ~~f~~ 220 (235)
T PRK14343 216 ANLDG 220 (235)
T ss_pred HHhCc
Confidence 66644
No 10
>PRK14345 lipoate-protein ligase B; Provisional
Probab=98.20 E-value=3.1e-05 Score=66.13 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=88.6
Q ss_pred hCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCch----hHHHHHHHHHhHHhHhcCccccc-cCcCcEEeC---
Q 028411 16 RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPF----PRSIMSWSGLLYNQVFKGIADFQ-LRENDYVFG--- 87 (209)
Q Consensus 16 ~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~----~~~i~~~L~~l~~~~~~gv~~~~-~~~~Di~v~--- 87 (209)
..+++|++=.=||...||.||++-.=.|++-....+.+.| -+.+++.|+.+ |+..+. .+.--++++
T Consensus 67 ~~~i~v~~tdRGG~iTyHGPGQLV~YpIldL~~~~~v~~yv~~LE~~vI~~l~~~------gi~a~~~~~~~GVWv~~~~ 140 (234)
T PRK14345 67 TDGTPVVDVDRGGKITWHGPGQLVGYPIIKLAEPLDVVDYVRRLEEALIAVCADL------GLNAGRVDGRSGVWVPADG 140 (234)
T ss_pred cCCCcEEEecCCCceeEeCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHc------CCceeecCCCCeEEECCCC
Confidence 4589999999999999999999877777665432233332 33444555555 663332 245678886
Q ss_pred ---CeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCc----hHHHHHHHHHH
Q 028411 88 ---NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPR----TDFIEKTTEAV 160 (209)
Q Consensus 88 ---grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~----~~~~e~l~~al 160 (209)
++||+-..-+.+++...|-=+|=++.|+.-+..+.+ -.+..+ .||+|++.++. ++..+.+.+.|
T Consensus 141 ~~~~~KIaaIGv~v~r~vT~HG~ALNV~~DL~~F~~IvP--CGl~~~-------~vTSl~~~~g~~~~~~~v~~~l~~~f 211 (234)
T PRK14345 141 GRPDRKIAAIGIRVSRGVTMHGFALNCDNDLAAFDAIVP--CGISDA-------GVTTLSAELGRTVTVAEVVDPVAAAL 211 (234)
T ss_pred CCCcceEEEEEeeeccceeecceEEEeCCChHHhceEEe--CCCCCC-------cEEehhHhhCCCCCHHHHHHHHHHHH
Confidence 799999999988765544438888888766554443 232332 37888765543 44556666666
Q ss_pred HHHcccC
Q 028411 161 ETYFSVK 167 (209)
Q Consensus 161 ~~~f~~~ 167 (209)
.+.|+..
T Consensus 212 ~~~f~~~ 218 (234)
T PRK14345 212 CDALDGR 218 (234)
T ss_pred HHHhCcc
Confidence 6666653
No 11
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=98.18 E-value=5e-05 Score=62.67 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCCEEEcccCCceeEecCCceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCccccc-cCcCcEEeCCeEe
Q 028411 18 QVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGIADFQ-LRENDYVFGNRKF 91 (209)
Q Consensus 18 gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv~~~~-~~~~Di~v~grKI 91 (209)
+.++++=.=||+..||+||++-.=.|++-.... +.+.+ -+.+++.|+.+ |+..++ .+.--++++++||
T Consensus 43 ~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~~I~~l~~~------gi~a~~~~~~~GVWv~~~KI 116 (184)
T TIGR00214 43 PAEVVQSERGGQVTYHGPGQQVMYVILDLKRFQLDVRWLVTQLEQTVIITLAEL------GIEGEPIADATGVWVEGKKV 116 (184)
T ss_pred cceEEEeCCCCeeEEECCCeEEEEEEEEchhcCCCHHHHHHHHHHHHHHHHHHc------CCceEEcCCCCeEEecCCEE
Confidence 334999899999999999998777777754421 22222 34444555555 664433 2467889999999
Q ss_pred eeeeeEEeCCEEEEEe-EEeeccccccccccccccCCCccccccccccccccccccCCchHHHHHHHHHHHHHc
Q 028411 92 GGNAQSITKNRWIHHT-SFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYF 164 (209)
Q Consensus 92 sG~Aq~~~~~~~l~HG-tlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~~al~~~f 164 (209)
+-..-+.+++. -.|| +|=++.|+.-+..+.+ -.+..+ .||+|.++.+ +..++++.+.+.+.|
T Consensus 117 asIGv~v~r~v-t~HG~ALNv~~dL~~F~~I~P--CGl~~~-------~vTSl~~~~~-~~~~~~v~~~~~~~f 179 (184)
T TIGR00214 117 ASLGIRVRRGC-TFHGLALNINMDLSPFSHINP--CGYAGR-------EMGSLNQFLP-GATVENVAPLLIKAF 179 (184)
T ss_pred EEEEEEEeccE-eecceEEEcCCCchHhccEEc--CCCCCC-------cEeeHHHHcC-CCCHHHHHHHHHHHH
Confidence 99999988755 5555 7777777666543332 233222 3788876643 444555555555544
No 12
>PRK14342 lipoate-protein ligase B; Provisional
Probab=98.17 E-value=6.8e-05 Score=63.20 Aligned_cols=136 Identities=9% Similarity=0.128 Sum_probs=89.2
Q ss_pred hCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCccccc-cCcCcEEeCCe
Q 028411 16 RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGIADFQ-LRENDYVFGNR 89 (209)
Q Consensus 16 ~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv~~~~-~~~~Di~v~gr 89 (209)
..++++++=.=||+..||+||++-.=.|++-...+ +.+.| -+.+++.|+.+ |+..+. .+.--++++++
T Consensus 61 ~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~~------gi~~~~~~~~~GVWv~~~ 134 (213)
T PRK14342 61 PGDIPVVQSDRGGQVTYHGPGQLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAEY------GIEAHAKPDAPGVYVDGK 134 (213)
T ss_pred CCCCcEEEecCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHc------CCceeecCCCCcCcccCC
Confidence 46899999999999999999998776676655422 22222 33345555555 664333 24568899999
Q ss_pred EeeeeeeEEeCCEEEEEe-EEeeccccccccccccccCCCccccccccccccccccccC---CchHHHHHHHHHHHHHcc
Q 028411 90 KFGGNAQSITKNRWIHHT-SFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYL---PRTDFIEKTTEAVETYFS 165 (209)
Q Consensus 90 KIsG~Aq~~~~~~~l~HG-tlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l---~~~~~~e~l~~al~~~f~ 165 (209)
||+-..-+.+++.- .|| +|=++.|+.-+..+.+ -.+..+ .||+|+++. +.++..+.+.+.|.+.|+
T Consensus 135 KIaaIGv~v~r~vT-~HG~AlNv~~dL~~F~~IvP--CGl~~~-------~vTSl~~~~~~~~~~~v~~~~~~~f~~~f~ 204 (213)
T PRK14342 135 KIASLGLRIRRGCS-FHGLALNVNMDLSPFLRINP--CGYAGL-------EMTQLSDLGGPATVDEVAPRLLAELLALLG 204 (213)
T ss_pred EEEEEEEeEeccee-ecceeEecCCCchhhCcEec--CCCCCC-------cEeeHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999887655 555 8888888766553332 233333 367776653 234556666666666776
Q ss_pred cC
Q 028411 166 VK 167 (209)
Q Consensus 166 ~~ 167 (209)
.+
T Consensus 205 ~~ 206 (213)
T PRK14342 205 YN 206 (213)
T ss_pred Cc
Confidence 43
No 13
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=98.14 E-value=7.3e-05 Score=62.88 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=93.1
Q ss_pred hCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCC----C-CchhHHHHHHHHHhHHhHhcCc-cccccCcCcEEeCC-
Q 028411 16 RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPG----V-QPFPRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFGN- 88 (209)
Q Consensus 16 ~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~----~-~~~~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~g- 88 (209)
..+||||.=-=||-.-||.||++-.=.++.-..... | +.+-+.+++.|..+ |+ +.-..++--++|++
T Consensus 67 ~~~ipVv~~~RGGqvTyHGPGQ~V~Y~ildLkr~~~~vr~~V~~LEqavI~tLa~~------~i~~~~~~~~~GVwV~~~ 140 (221)
T COG0321 67 PDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLAEY------GIEAERRPDRPGVWVEEE 140 (221)
T ss_pred CCCCCEEEecCCceeEEeCCCcEEEEEEEecccccccHHHHHHHHHHHHHHHHHHc------CCcccccCCCCeEEecCC
Confidence 689999999999999999999965555555443211 1 11234444455555 66 33333567889986
Q ss_pred eEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCc---hHHHHHHHHHHHHHcc
Q 028411 89 RKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPR---TDFIEKTTEAVETYFS 165 (209)
Q Consensus 89 rKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~---~~~~e~l~~al~~~f~ 165 (209)
+||+-.+-+.+++..+|-=.|=++.|++-+..+.+- .+.. ..||+|.++.+. ++....|.++|.+.|+
T Consensus 141 ~KIAaiGirirr~vs~HGlALNv~~DL~~F~~I~PC--G~~~-------~~~tsl~d~~~~v~~~~V~~~l~~~~~~~l~ 211 (221)
T COG0321 141 RKIAAIGIRIRRGVTFHGLALNVNMDLSPFNRIVPC--GYAG-------MEVTSLSDLGPPVTVDEVAKALVAAFAKLLG 211 (221)
T ss_pred ceEEEEEEEEecccceeeeEEeccCCchhccceecc--ccCC-------CceeEHHHhCCCCcHHHHHHHHHHHHHHHhC
Confidence 999999999998877766689999999888766643 2222 238889888763 3444455666666666
Q ss_pred cC
Q 028411 166 VK 167 (209)
Q Consensus 166 ~~ 167 (209)
..
T Consensus 212 ~~ 213 (221)
T COG0321 212 PK 213 (221)
T ss_pred Cc
Confidence 54
No 14
>PRK14341 lipoate-protein ligase B; Provisional
Probab=98.11 E-value=5.6e-05 Score=63.70 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=85.0
Q ss_pred hhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCccccc-cCcCcEEeCC
Q 028411 15 LRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGIADFQ-LRENDYVFGN 88 (209)
Q Consensus 15 ~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv~~~~-~~~~Di~v~g 88 (209)
...+|+|++=.=||...||.||++-.=.|++-.... +.+.+ -+.+++.|+.+ |+..+. .+.--+++++
T Consensus 60 ~~~~i~v~~t~RGG~iTyHGPGQlV~YpIl~L~~~~~~v~~yv~~lE~~iI~~l~~~------gi~~~~~~~~~GVWv~~ 133 (213)
T PRK14341 60 DPDRFPVYETGRGGQYTYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAAF------NIRGERREDRVGVWVRR 133 (213)
T ss_pred CCCCCCEEEeCCCcceeEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHh------CCceEEcCCCCeEEecC
Confidence 456999999999999999999998777777654421 22222 34445555555 663332 2456788873
Q ss_pred --------eEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCchHHHHHHHHHH
Q 028411 89 --------RKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAV 160 (209)
Q Consensus 89 --------rKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~~al 160 (209)
|||+-..-+.+++...|-=+|=++.|+.-+..+.+ -.+..+ .||+|++ ++.+..++++++.|
T Consensus 134 ~~~~~~~~~KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~~IvP--CGl~~~-------~vTSl~~-~g~~~~~~~v~~~l 203 (213)
T PRK14341 134 PDKGSGAEDKIAAIGVRLRRWVSFHGISINVEPDLSHFSGIVP--CGISEH-------GVTSLVD-LGLPVTMDDVDAAL 203 (213)
T ss_pred ccCCCCCCCcEEEEeeeEecceeccceEEEecCChhhhCcEec--CCCCCC-------cEeeHHH-hCCCCCHHHHHHHH
Confidence 89999999988766555448888888766554332 233332 3677766 34344444455444
Q ss_pred HHHc
Q 028411 161 ETYF 164 (209)
Q Consensus 161 ~~~f 164 (209)
.+.|
T Consensus 204 ~~~f 207 (213)
T PRK14341 204 KKAF 207 (213)
T ss_pred HHHH
Confidence 4444
No 15
>PRK14349 lipoate-protein ligase B; Provisional
Probab=97.91 E-value=0.00036 Score=59.07 Aligned_cols=138 Identities=10% Similarity=0.004 Sum_probs=87.9
Q ss_pred hhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC-CCCchh----HHHHHHHHHhHHhHhcCcc-ccc-cCcCcEEeC
Q 028411 15 LRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP-GVQPFP----RSIMSWSGLLYNQVFKGIA-DFQ-LRENDYVFG 87 (209)
Q Consensus 15 ~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~-~~~~~~----~~i~~~L~~l~~~~~~gv~-~~~-~~~~Di~v~ 87 (209)
...+++|++=.=||...||.||++-.=.|++-.... +.+.+. +.+++.|..+ |+. ... .+.--++++
T Consensus 55 ~~~~i~vv~t~RGG~iTyHGPGQLV~YpIldL~~~~~~vr~yv~~LE~~~I~~l~~~------gi~~a~~~~~~~GVWv~ 128 (220)
T PRK14349 55 NPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLREL------GLEQACRKPGAPGIYVP 128 (220)
T ss_pred CCCCCcEEEecCCcceEEeCCCcEEEEEEEEcccCCCCHHHHHHHHHHHHHHHHHHh------CCcceeecCCCCcEEeC
Confidence 456899999999999999999998776776655421 233333 3345555555 664 333 245568887
Q ss_pred -----CeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccC---CchHHHHHHHHH
Q 028411 88 -----NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYL---PRTDFIEKTTEA 159 (209)
Q Consensus 88 -----grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l---~~~~~~e~l~~a 159 (209)
.|||+-..-+.+++...|--+|=++.|++-+..+.+ -.+..+ .||+|.++. +.++..+.|.+.
T Consensus 129 ~~~~~~~KIaaiGv~v~r~vT~HG~ALNv~~DL~~F~~IvP--CGl~~~-------~vTSl~~~g~~~~~~~v~~~l~~~ 199 (220)
T PRK14349 129 QPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSPFLGINP--CGYEGL-------RTVDLAACGVRTSVERAGELLAAQ 199 (220)
T ss_pred CCCCCCceEEEEeeEEecceeecceeEEecCCchhhCcEEc--CCCCCC-------cEeeHHHhCCCCCHHHHHHHHHHH
Confidence 489999999988765554448888888766554443 233332 366776532 234455566666
Q ss_pred HHHHcccC
Q 028411 160 VETYFSVK 167 (209)
Q Consensus 160 l~~~f~~~ 167 (209)
|.+.|+.+
T Consensus 200 f~~~f~~~ 207 (220)
T PRK14349 200 LARAHGQA 207 (220)
T ss_pred HHHHhCcc
Confidence 66666554
No 16
>PRK14346 lipoate-protein ligase B; Provisional
Probab=97.87 E-value=0.00025 Score=60.32 Aligned_cols=135 Identities=7% Similarity=0.062 Sum_probs=84.3
Q ss_pred hhCCCCEEEcccCCceeEecCCceEEEEEEeCCCC-CCCCch----hHHHHHHHHHhHHhHhcCccccc-cCcCcEEeC-
Q 028411 15 LRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDV-PGVQPF----PRSIMSWSGLLYNQVFKGIADFQ-LRENDYVFG- 87 (209)
Q Consensus 15 ~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~-~~~~~~----~~~i~~~L~~l~~~~~~gv~~~~-~~~~Di~v~- 87 (209)
...+|||++=.=||...||.||++-.=.|++-... ...+.| -+.+++.|+.+ |+..+. .+.--++++
T Consensus 57 ~~~~i~v~~tdRGG~iTyHGPGQlV~YpildL~~~~~~vr~yv~~lE~~vI~~l~~~------gi~~~~~~~~~GVWv~~ 130 (230)
T PRK14346 57 NPGDIPVVATNRGGQVTYHGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAHF------GVTGHRVAGAPGIYVRL 130 (230)
T ss_pred CCCCCcEEEeCCCcceeEECCCeEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHh------CCceEEcCCCCEEEEcC
Confidence 45689999999999999999999877667665442 122333 34455566665 553222 123345553
Q ss_pred ---------------------------CeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCcccccccccccc
Q 028411 88 ---------------------------NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFI 140 (209)
Q Consensus 88 ---------------------------grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~v 140 (209)
.+||+-...+.+++...|--+|=++.|+.-+..+.+ -.+..+ .|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KIaAiGv~v~r~vT~HG~ALNv~~DL~~F~~IvP--CGl~~~-------~v 201 (230)
T PRK14346 131 DDPFSHAALPQRPQKRGGGAPQPPFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPFSRINP--CGYAGL-------QT 201 (230)
T ss_pred CCccccccccccccccccccccccccccceEEEEeeEEecceeecceeEEcCCChhhhCcEEC--CCCCCC-------ce
Confidence 379999999998865555448888888665544433 233332 37
Q ss_pred ccccccCCchHHHHHHHHHHHHHcc
Q 028411 141 CRMNEYLPRTDFIEKTTEAVETYFS 165 (209)
Q Consensus 141 t~L~e~l~~~~~~e~l~~al~~~f~ 165 (209)
|+|++ ++.+..++++++.|.+.|.
T Consensus 202 TSL~~-lg~~~~~~~v~~~l~~~f~ 225 (230)
T PRK14346 202 VDLST-IGVQTTWDEAASVLGQQLA 225 (230)
T ss_pred eeHHH-hCCCCCHHHHHHHHHHHHH
Confidence 77765 3444556666666655553
No 17
>PRK14347 lipoate-protein ligase B; Provisional
Probab=97.83 E-value=0.00072 Score=56.87 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=84.8
Q ss_pred hhCCCCEEEcccCCceeEecCCceEEEEEEeCCCC---CCCCch----hHHHHHHHHHhHHhHhcCccccc-cCcCcEEe
Q 028411 15 LRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDV---PGVQPF----PRSIMSWSGLLYNQVFKGIADFQ-LRENDYVF 86 (209)
Q Consensus 15 ~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~---~~~~~~----~~~i~~~L~~l~~~~~~gv~~~~-~~~~Di~v 86 (209)
...++||++=.=||...||.||++-.=.|++-... .+.+.+ -+.+++.|..+ |+..++ .+.--+++
T Consensus 58 ~~~~i~v~~t~RGG~vTyHGPGQlV~YpIldL~~~~~~~~v~~yv~~lE~~ii~~l~~~------gi~~~~~~~~~GVWv 131 (209)
T PRK14347 58 NYGDIPVIYTGRGGKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYF------GIKAYIIKDKVGIWV 131 (209)
T ss_pred cccCCcEEEecCCcceEEeCCCcEEEEEEEeccccccCCCHHHHHHHHHHHHHHHHHHc------CCceEEcCCCCEEEE
Confidence 45699999999999999999999776666665431 122222 23444555555 664333 24556777
Q ss_pred C-----CeEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCchHHHHHHHHHHH
Q 028411 87 G-----NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVE 161 (209)
Q Consensus 87 ~-----grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~~al~ 161 (209)
+ ++||+-..-+.+++...|-=+|=++.|+.-+..+.+ -.+..+ .||+|+++ +.+..++++.+.|.
T Consensus 132 ~~~~~~~~KIaaiGv~v~r~vT~HG~AlNv~~dL~~F~~IvP--CGl~~~-------~vTSl~~~-g~~~~~~~v~~~l~ 201 (209)
T PRK14347 132 KVRKDEFAKIAAIGVRVRKWVTYHGVAINISTDLSKFSGIIP--CGLENS-------LVTSLNQL-GIHVEMSEFDKIIQ 201 (209)
T ss_pred cCCCCCCceEEEEeEEEecceeecceEEEeCCCccccCcEEC--CCCCCC-------cEeeHHHh-CCCCCHHHHHHHHH
Confidence 5 689999999988865554448888888776654443 233332 36777654 33445555555555
Q ss_pred HHc
Q 028411 162 TYF 164 (209)
Q Consensus 162 ~~f 164 (209)
+.|
T Consensus 202 ~~f 204 (209)
T PRK14347 202 TEF 204 (209)
T ss_pred HHH
Confidence 555
No 18
>PRK08330 biotin--protein ligase; Provisional
Probab=96.56 E-value=0.034 Score=47.23 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=48.6
Q ss_pred CEEEcccCC----ceeEec-CCceEEEEEEeCCCCCC-CCch----hHHHHHHHHHhHHhHhcCc-cccccCcCcEEeCC
Q 028411 20 PVMKRFTGG----GTVVVD-KGTVFVTLICNKDDVPG-VQPF----PRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFGN 88 (209)
Q Consensus 20 ~vvRR~sGG----GaVyhD-~g~l~~Sli~~~~~~~~-~~~~----~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~g 88 (209)
-+..+.|.| |-.++. +|++.+|++++....+. ...+ .-.++++|+.+ |+ .... -+|||.++|
T Consensus 31 v~A~~QT~GrGR~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~~av~~~l~~~------g~~~~iK-WPNDI~~~~ 103 (236)
T PRK08330 31 IVADRQTAGHGRKGRAWASPEGGLWMSVILKPKVSPEHLPKLVFLGALAVVDTLREF------GIEGKIK-WPNDVLVNY 103 (236)
T ss_pred EEECccccCCCCCCCeeeCCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHc------CCCcccc-CCCeEEECC
Confidence 356777877 456665 78999999986433211 1111 12244555554 44 2333 479999999
Q ss_pred eEeeeeeeEEeCCEEEEEe
Q 028411 89 RKFGGNAQSITKNRWIHHT 107 (209)
Q Consensus 89 rKIsG~Aq~~~~~~~l~HG 107 (209)
|||+|.=--...+ .+.||
T Consensus 104 kKi~GILiE~~~~-~~viG 121 (236)
T PRK08330 104 KKIAGVLVEGKGD-FVVLG 121 (236)
T ss_pred eEEEEEeEEEeCC-EEEEE
Confidence 9999995554444 35555
No 19
>PRK08477 biotin--protein ligase; Provisional
Probab=95.50 E-value=0.34 Score=40.78 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=42.6
Q ss_pred CCEEEcccCC----ceeEec-CCceEEEEEEeCCCCCCCC-c--h----hHHHHHHHHHhHHhHhcCc-cccccCcCcEE
Q 028411 19 VPVMKRFTGG----GTVVVD-KGTVFVTLICNKDDVPGVQ-P--F----PRSIMSWSGLLYNQVFKGI-ADFQLRENDYV 85 (209)
Q Consensus 19 I~vvRR~sGG----GaVyhD-~g~l~~Sli~~~~~~~~~~-~--~----~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~ 85 (209)
+-+..+.|.| |-.++. +|+|.+|++++....+... . + .-.++++++++ |+ ...- =+|||.
T Consensus 30 vvvA~~QTaGRGR~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~~lsl~~~~av~~~l~~~------~~~~~iK-WPNDI~ 102 (211)
T PRK08477 30 AIVAKEQTAGIGSRGNSWEGKKGNLFFSFALKESDLPKDLPLQSSSIYFGFLLKEVLKEL------GSKVWLK-WPNDLY 102 (211)
T ss_pred EEEECccCCCCCCCCCcccCCCCCeEEEeecCCCcchhhhhhHHHHHHHHHHHHHHHHHh------CCCeEEc-CCCeeE
Confidence 4467888888 566666 6899999998754422110 0 0 11123333333 32 1122 269999
Q ss_pred eCCeEeeeeee
Q 028411 86 FGNRKFGGNAQ 96 (209)
Q Consensus 86 v~grKIsG~Aq 96 (209)
++|||++|.=-
T Consensus 103 ~~~kKi~GIL~ 113 (211)
T PRK08477 103 LDDKKIGGVIT 113 (211)
T ss_pred ECCcEEEEEEE
Confidence 99999999744
No 20
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism]
Probab=95.31 E-value=0.51 Score=39.93 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=84.7
Q ss_pred chhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHhHHhHhcCc-cccccCcCcEEeCC
Q 028411 10 EIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFGN 88 (209)
Q Consensus 10 nld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~g 88 (209)
+-..+.+.|.++.|=.-||-.-||+||++.--.|..-..+. + -.+..+..|++.+... |+ +......--++|..
T Consensus 67 ~e~~l~~~ga~~~~t~RGG~iTfHGPgQl~~ypIidL~~f~-~--~~r~~Vs~le~~c~~~--~i~~~~~t~~tgvwV~d 141 (226)
T KOG0325|consen 67 DESRLYKLGAEFHKTERGGLITFHGPGQLVAYPIIDLRHFG-F--SARCYVSTLEAACPDF--GIKGTASTKDTGVWVGD 141 (226)
T ss_pred hhhhhhhcCceEEEeecCceEEEeCCCceEEEEEEEeeccc-c--chhhHHHHHHhhcccc--cccccccccccceeecC
Confidence 34556788999999999999999999997655555444422 1 1333344444332211 33 11111234678888
Q ss_pred eEeeeeeeEEeCCEEEEEeEEeeccccccccccccccCCCccccccccccccccccccCCchHHHHHHHHHHHHHcccC
Q 028411 89 RKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVK 167 (209)
Q Consensus 89 rKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~~al~~~f~~~ 167 (209)
.||+-..-++.++.-.|-+.|-.++|+.-+..+-+ -.+..+++.|+. .-+...++....+..+..+|.+.|+-.
T Consensus 142 ~k~aaiGi~vsr~IT~HGlaLN~~tDL~~fnhiv~--CGi~~~~vtSi~---~e~~~~~~~~~~~~~~l~~l~k~f~~~ 215 (226)
T KOG0325|consen 142 AKIAAIGIRVSREITYHGLALNVNTDLTYFNHIVP--CGIYGRGVTSIS---KEIRRLVTVEESVAIRLVSLTKVFSCM 215 (226)
T ss_pred CeeEEEEEEecCcEeecceEEEeccCcchhhcccc--ceeeccccceeh---hhhccccchhHhHHHHHHHHHHhhhhh
Confidence 89998888888776666667777788766642111 223334433332 111122333455666666677777643
No 21
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=94.24 E-value=0.15 Score=44.76 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=39.2
Q ss_pred EEcccCC----------ceeEec-CCceEEEEEEeCCCCC--CCCch----hHHHHHHHHHhHHhHhcCc-cccccCcCc
Q 028411 22 MKRFTGG----------GTVVVD-KGTVFVTLICNKDDVP--GVQPF----PRSIMSWSGLLYNQVFKGI-ADFQLREND 83 (209)
Q Consensus 22 vRR~sGG----------GaVyhD-~g~l~~Sli~~~~~~~--~~~~~----~~~i~~~L~~l~~~~~~gv-~~~~~~~~D 83 (209)
..+.|.| |-.+.. +|+|.+|++++....+ ....+ .-.++++|+.+ ++ ...- =+||
T Consensus 55 A~~QT~GRGR~~~~~~~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~Lsl~~alAv~~~L~~~------~~~~~IK-WPND 127 (285)
T PTZ00275 55 CNEQTNGIGTRDTKKNQDRIWLSEKGNLFTTFVFLWNRNDIEKVKYLAQTCTVAISKTLEYF------HLVTQIK-WIND 127 (285)
T ss_pred ECcccCCCCcCCCCCCCCCEEECCCCceEEEEEEecCCcCHhHhHHHHHHHHHHHHHHHHHh------CCceeEE-CCCc
Confidence 3788877 345565 7999999998533211 11111 12234445444 33 1222 3699
Q ss_pred EEeCCeEeeee
Q 028411 84 YVFGNRKFGGN 94 (209)
Q Consensus 84 i~v~grKIsG~ 94 (209)
|.++||||+|.
T Consensus 128 I~~~~kKiaGI 138 (285)
T PTZ00275 128 VLVNYKKIAGC 138 (285)
T ss_pred cccCCcEEEEE
Confidence 99999999997
No 22
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=93.67 E-value=0.28 Score=42.07 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=42.1
Q ss_pred CCEEEcccCC----ceeEec-CCceEEEEEEeCCCCC-C-CCch----hHHHHHHHHHhHHhHhcCc-cccccCcCcEEe
Q 028411 19 VPVMKRFTGG----GTVVVD-KGTVFVTLICNKDDVP-G-VQPF----PRSIMSWSGLLYNQVFKGI-ADFQLRENDYVF 86 (209)
Q Consensus 19 I~vvRR~sGG----GaVyhD-~g~l~~Sli~~~~~~~-~-~~~~----~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v 86 (209)
+-+.++.|.| |=.++. +|+|-+|++++....+ . ...+ .-.++++|+.++ .++ ...- =+|||.+
T Consensus 35 vviA~~QT~GRGR~gR~W~Sp~g~l~~S~~l~~~~~~~~~~~~lsl~~alav~~al~~~~----~~~~~~iK-WPNDI~~ 109 (245)
T PTZ00276 35 AVLAESQTAGRGTGGRTWTSPKGNMYFTLCIPQKGVPPELVPVLPLITGLACRAAIMEVL----HGAAVHTK-WPNDIIY 109 (245)
T ss_pred EEEECCCCCCCCCCCCcccCCCCCeEEEEEECCCccChhHhhHHHHHHHHHHHHHHHHhc----cCCceEEE-cCCeeEE
Confidence 4567888888 446655 6899999999654322 1 1111 112333444431 122 1111 2699999
Q ss_pred CCeEeeeee
Q 028411 87 GNRKFGGNA 95 (209)
Q Consensus 87 ~grKIsG~A 95 (209)
+|||++|.=
T Consensus 110 ~~kKiaGIL 118 (245)
T PTZ00276 110 AGKKIGGSL 118 (245)
T ss_pred CCcEEEEEE
Confidence 999999964
No 23
>PRK05935 biotin--protein ligase; Provisional
Probab=91.49 E-value=0.62 Score=38.53 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCEEEcccCC----ceeEec-CCceEEEEEEeCCCC-CCCCchh----HHHHHHHHHhHHhHhcCcccccc-CcCcEEeC
Q 028411 19 VPVMKRFTGG----GTVVVD-KGTVFVTLICNKDDV-PGVQPFP----RSIMSWSGLLYNQVFKGIADFQL-RENDYVFG 87 (209)
Q Consensus 19 I~vvRR~sGG----GaVyhD-~g~l~~Sli~~~~~~-~~~~~~~----~~i~~~L~~l~~~~~~gv~~~~~-~~~Di~v~ 87 (209)
+-+..+.|.| |=.++. +|++.+|++++.... ....... -.++++++.+ +...+.- =+|||.++
T Consensus 32 vv~A~~QTaGRGR~GR~W~Sp~G~L~~Si~l~~~~~~~~~~~~~~l~~~av~~~l~~~------~~~~~~iKWPNDI~~~ 105 (190)
T PRK05935 32 VISTREQTAGKGKFGKSWHSSDQDLLASFCFFITVLNIDVSLLFRLGTEAVMRLGEDL------GITEAVIKWPNDVLVH 105 (190)
T ss_pred EEEECccCCCCCCCCCeeeCCCCCeEEEEEEccCCCCcCHHHHHHHHHHHHHHHHHHh------CCccccccCCCeEEEC
Confidence 4456677877 334554 789999998853321 1111111 1233334433 3211111 26999999
Q ss_pred CeEeeeee
Q 028411 88 NRKFGGNA 95 (209)
Q Consensus 88 grKIsG~A 95 (209)
|||++|.=
T Consensus 106 ~kKi~GIL 113 (190)
T PRK05935 106 GEKLCGVL 113 (190)
T ss_pred CcEEEEEE
Confidence 99999963
No 24
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=90.83 E-value=0.77 Score=38.89 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCEEEcccCC----ceeEe-cCCceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCc-cccccCcCcEEeC
Q 028411 19 VPVMKRFTGG----GTVVV-DKGTVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFG 87 (209)
Q Consensus 19 I~vvRR~sGG----GaVyh-D~g~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~ 87 (209)
+-+..+.|.| |-+++ .+|+|.+|++++....+ ....+ .-.++++|+.+ ++ ..+- =+|||.++
T Consensus 28 vv~A~~QTaGRGR~gr~W~Sp~g~l~~S~~l~~~~~~~~~~~ls~~~~lAv~~al~~~------~~~~~iK-WPNDI~~~ 100 (237)
T TIGR00121 28 LVVAEYQTAGRGRRGRKWLSPEGGLYFSLILRPDLPKSPAPGLTLVAGIAIAEVLKEL------GDQVQVK-WPNDILLK 100 (237)
T ss_pred EEEEcccCCCCCCCCCcccCCCCceEEEEEECCCCChhHhhhhHHHHHHHHHHHHHHh------CCCCCCc-CCceEEEC
Confidence 3456777776 33444 46889999998754211 11111 22344455554 32 1222 26999999
Q ss_pred CeEeeeee
Q 028411 88 NRKFGGNA 95 (209)
Q Consensus 88 grKIsG~A 95 (209)
||||+|.=
T Consensus 101 ~kKi~GIL 108 (237)
T TIGR00121 101 DKKLGGIL 108 (237)
T ss_pred CeEEEEEE
Confidence 99999973
No 25
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=89.19 E-value=0.96 Score=39.95 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCEEEcccCC----ceeEec-CC-ceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCc--cccccCcCcEE
Q 028411 19 VPVMKRFTGG----GTVVVD-KG-TVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGI--ADFQLRENDYV 85 (209)
Q Consensus 19 I~vvRR~sGG----GaVyhD-~g-~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv--~~~~~~~~Di~ 85 (209)
+-+....|-| |-.++. +| +|.+|++++....+ ....+ .-.++++|+.+ +. ..+- =+|||.
T Consensus 105 vv~A~~Qt~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~~~av~~al~~~------~~~~~~iK-WPNDI~ 177 (319)
T PRK11886 105 LCLAEYQTAGRGRRGRQWFSPFGGNLYLSLYWRLNQGPAQAMGLSLVVGIAIAEALRRL------GAIDVGLK-WPNDIY 177 (319)
T ss_pred EEEECccCCCCCCCCCcccCCCCCCEEEEEEeCCCCChHHHhhHHHHHHHHHHHHHHHh------cCCCccee-CCceee
Confidence 3456667776 345555 46 79999998754211 11111 12234444444 21 1122 269999
Q ss_pred eCCeEeeeee
Q 028411 86 FGNRKFGGNA 95 (209)
Q Consensus 86 v~grKIsG~A 95 (209)
++|||++|.=
T Consensus 178 ~~~kKl~GIL 187 (319)
T PRK11886 178 LNDRKLAGIL 187 (319)
T ss_pred ECCeeEEEEE
Confidence 9999999963
No 26
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=88.50 E-value=1.3 Score=37.94 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=44.0
Q ss_pred CCEEEcccCCc----eeEec-CC-ceEEEEEEeCCCCC----CCCc-hhHHHHHHHHHhHHhHhcCc-cccccCcCcEEe
Q 028411 19 VPVMKRFTGGG----TVVVD-KG-TVFVTLICNKDDVP----GVQP-FPRSIMSWSGLLYNQVFKGI-ADFQLRENDYVF 86 (209)
Q Consensus 19 I~vvRR~sGGG----aVyhD-~g-~l~~Sli~~~~~~~----~~~~-~~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v 86 (209)
+-+..+.|.|. =.++. +| ++.+|+++..+..+ .+.. ..-.++++|+++ ++ ...- =+|||.+
T Consensus 24 vvvA~~QTaGRGR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~~~------~~~~~iK-WPNDv~~ 96 (238)
T COG0340 24 VVVAEEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALRKF------GIDVRIK-WPNDVLL 96 (238)
T ss_pred EEEEeeeccCcCCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHHHHHh------CcccCcc-CCcceeE
Confidence 67778887763 34554 45 89999998765421 1111 123456677776 32 1222 2699999
Q ss_pred CCeEeeeee
Q 028411 87 GNRKFGGNA 95 (209)
Q Consensus 87 ~grKIsG~A 95 (209)
+|||++|.=
T Consensus 97 ~~kKl~GIL 105 (238)
T COG0340 97 NGKKLAGIL 105 (238)
T ss_pred CCcceEEEE
Confidence 999999963
No 27
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=80.22 E-value=3.8 Score=39.71 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=41.1
Q ss_pred CCEEEcccCCc----eeEec-CC-ceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCcc-ccccCcCcEEe
Q 028411 19 VPVMKRFTGGG----TVVVD-KG-TVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGIA-DFQLRENDYVF 86 (209)
Q Consensus 19 I~vvRR~sGGG----aVyhD-~g-~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv~-~~~~~~~Di~v 86 (209)
+-+..+.|.|. -.++. +| +|.||++++.+..+ ....+ .-.++++|+.+ |+. ..- =+|||.+
T Consensus 112 vvvAe~QTaGRGRrGR~W~Sp~G~~Ly~S~~l~~~~~~~~~~~Lsl~vgvAv~~aL~~~------g~~v~lK-WPNDIl~ 184 (592)
T PRK13325 112 ICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAAVACRRALSRL------GLKTQIK-WPNDLVV 184 (592)
T ss_pred EEEECccCCCCCCCCCcccCCCCCcEEEEeeecCCCChhhhhhHHHHHHHHHHHHHHHc------CCCceEe-CcceEEE
Confidence 34567778773 45555 56 59999998643211 11111 22345555555 431 222 2599999
Q ss_pred CCeEeeee
Q 028411 87 GNRKFGGN 94 (209)
Q Consensus 87 ~grKIsG~ 94 (209)
+|||++|.
T Consensus 185 ~gkKlaGI 192 (592)
T PRK13325 185 GRDKLGGI 192 (592)
T ss_pred CCceEEEE
Confidence 99999996
No 28
>PRK06955 biotin--protein ligase; Provisional
Probab=77.87 E-value=8 Score=34.04 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=39.6
Q ss_pred CEEEcccCC----ceeEec-CC-ceEEEEEEeCCCCC-CCCch----hHHHHHHHHHhHHhHhcCc-cccccCcCcEEeC
Q 028411 20 PVMKRFTGG----GTVVVD-KG-TVFVTLICNKDDVP-GVQPF----PRSIMSWSGLLYNQVFKGI-ADFQLRENDYVFG 87 (209)
Q Consensus 20 ~vvRR~sGG----GaVyhD-~g-~l~~Sli~~~~~~~-~~~~~----~~~i~~~L~~l~~~~~~gv-~~~~~~~~Di~v~ 87 (209)
-+..+.|.| |-.++. +| +|.+|++++....+ ....+ .-.++++|+.++.+. +. ...- =+|||.++
T Consensus 68 vvA~~QTaGRGR~GR~W~Sp~G~~L~~Si~l~~~~~~~~~~~Lsl~~glAv~~al~~~~~~~--~~~~~iK-WPNDIl~~ 144 (300)
T PRK06955 68 RVAYEQTAGRGRQGRPWFAQPGNALLFSVACVLPRPVAALAGLSLAVGVALAEALAALPAAL--GQRIALK-WPNDLLIA 144 (300)
T ss_pred EEECccccCCCCCcCcccCCCCCcEEEEeEecCCCChHHhhhHHHHHHHHHHHHHHHhhccc--CCceeee-CCceeeEC
Confidence 356777777 345544 67 59999998644211 11111 112344455442100 11 1121 26999999
Q ss_pred CeEeeeee
Q 028411 88 NRKFGGNA 95 (209)
Q Consensus 88 grKIsG~A 95 (209)
||||+|.=
T Consensus 145 gkKiaGIL 152 (300)
T PRK06955 145 GRKLAGIL 152 (300)
T ss_pred CcEEEEEE
Confidence 99999963
No 29
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=56.06 E-value=7.4 Score=36.62 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.3
Q ss_pred hhhhhCCCCEEEcccCCceeEecCCce
Q 028411 12 GSVLRDQVPVMKRFTGGGTVVVDKGTV 38 (209)
Q Consensus 12 d~~~~~gI~vvRR~sGGGaVyhD~g~l 38 (209)
+.+++.||||++ +||=|||.|.+.+
T Consensus 339 ~~L~~~Gvpi~~--~Gghav~iDa~~~ 363 (467)
T TIGR02617 339 NGLEEIGVVCQQ--AGGHAAFVDAGKL 363 (467)
T ss_pred HHHHhCCCcEEe--cCccEEEEehhhh
Confidence 456889999988 9999999998654
No 30
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=41.91 E-value=19 Score=22.98 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.6
Q ss_pred hhhhhhCCCCEEEcccC
Q 028411 11 IGSVLRDQVPVMKRFTG 27 (209)
Q Consensus 11 ld~~~~~gI~vvRR~sG 27 (209)
.++++++||+.+.|+.|
T Consensus 21 ~~~L~~~Gi~~~~~~~G 37 (47)
T PF13986_consen 21 IRWLRRNGIPFVVRADG 37 (47)
T ss_pred HHHHHHCCCeeEECCCC
Confidence 46789999999999965
No 31
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=40.83 E-value=16 Score=23.25 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=13.6
Q ss_pred hhhhhhCCCCEEEcccCCceeEe
Q 028411 11 IGSVLRDQVPVMKRFTGGGTVVV 33 (209)
Q Consensus 11 ld~~~~~gI~vvRR~sGGGaVyh 33 (209)
+..|+.+.| |-+|||||--
T Consensus 16 L~aCQaN~i----RDvqGGtVaP 34 (46)
T PF02402_consen 16 LAACQANYI----RDVQGGTVAP 34 (46)
T ss_pred HHHhhhcce----ecCCCceECC
Confidence 456666654 8899999853
No 32
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=33.42 E-value=71 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=29.7
Q ss_pred eeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHh
Q 028411 30 TVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLL 66 (209)
Q Consensus 30 aVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l 66 (209)
+|+.-.|.++++++...+..++...+.+.+.++|.+|
T Consensus 114 tv~SY~g~l~~gi~ad~~~vpD~~~l~~~~~~~l~eL 150 (153)
T PF06974_consen 114 TVFSYAGKLDFGIVADRDAVPDPQRLADCFEEALEEL 150 (153)
T ss_pred EEEEeCCEEEEEEEEccccCCCHHHHHHHHHHHHHHH
Confidence 4556678999999998877788888888888888776
No 33
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=33.07 E-value=25 Score=33.20 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.2
Q ss_pred hhhhhCCCCEEEcccCCceeEecCCc
Q 028411 12 GSVLRDQVPVMKRFTGGGTVVVDKGT 37 (209)
Q Consensus 12 d~~~~~gI~vvRR~sGGGaVyhD~g~ 37 (209)
+.+.+.||||+. ++||=+||.|.+.
T Consensus 330 ~~L~~~Gvpv~~-p~ggH~v~vda~~ 354 (460)
T PRK13237 330 EKLLAAGVPIVE-PVGGHAVFLDARR 354 (460)
T ss_pred HHHHHCCCceec-CCCceEEEEEhHH
Confidence 456889999995 8999999999764
No 34
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism]
Probab=30.69 E-value=1.7e+02 Score=28.59 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=44.7
Q ss_pred CceeEecC-CceEEEEEEeCCCC---CCCCchhHHH-HHHHHHhHHhHhcCcccc---ccCcCcEEeCC-eEeeeeeeE-
Q 028411 28 GGTVVVDK-GTVFVTLICNKDDV---PGVQPFPRSI-MSWSGLLYNQVFKGIADF---QLRENDYVFGN-RKFGGNAQS- 97 (209)
Q Consensus 28 GGaVyhD~-g~l~~Sli~~~~~~---~~~~~~~~~i-~~~L~~l~~~~~~gv~~~---~~~~~Di~v~g-rKIsG~Aq~- 97 (209)
||-||.-| |++.|||+.+-+.- ...-.+.+.+ +.++...-. -..|+..+ --=+|||.+++ .||+|.=-.
T Consensus 428 GgN~WlsP~G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~-~~pGy~dIpvrIKWPNDlY~~~~lKvgGiLv~s 506 (649)
T KOG1536|consen 428 GGNVWLSPKGCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVR-YAPGYPDIPVRIKWPNDLYVNGYLKVGGILVTS 506 (649)
T ss_pred CCCeeecCcceEeEEEEEEeecccccccchHHHHHHHHHHHHHHHh-cCCCCCCCceeeecCccceeeeccccceEEEEe
Confidence 67788885 99999998664331 0000111111 111111100 00132111 11269999999 999996432
Q ss_pred --EeCC-EEEEEeEEeeccccccc
Q 028411 98 --ITKN-RWIHHTSFLWDYAEGNM 118 (209)
Q Consensus 98 --~~~~-~~l~HGtlL~d~d~~~~ 118 (209)
|.+. .++.-+.|=++.|--++
T Consensus 507 t~r~n~f~v~iGCGiNVtN~~PT~ 530 (649)
T KOG1536|consen 507 TYRSNKFNVSIGCGINVTNDGPTT 530 (649)
T ss_pred eecCceEEEEEeeeeEecCCCCce
Confidence 2222 44555566666664443
No 35
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=30.01 E-value=32 Score=27.87 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=17.6
Q ss_pred CccccCCHHHHHHHHhcccc
Q 028411 184 PSTRLLSKQELEEALGTQPE 203 (209)
Q Consensus 184 ~~~~~l~~~~~~~~~~~~~~ 203 (209)
...|+||.+|+++|.+|..|
T Consensus 81 ~k~y~Lt~e~i~Eir~LR~~ 100 (164)
T PF12824_consen 81 EKKYHLTPEDIQEIRRLRAE 100 (164)
T ss_pred cccccCCHHHHHHHHHHHHc
Confidence 36699999999999999876
No 36
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=25.09 E-value=3.1e+02 Score=22.64 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=26.2
Q ss_pred cCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecc
Q 028411 81 ENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDY 113 (209)
Q Consensus 81 ~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~ 113 (209)
.-||.++|||+|=|=.....-....|-.|-+..
T Consensus 106 GDDLy~~~~KLSVSIAt~s~vS~kIH~GiNV~~ 138 (183)
T PF04017_consen 106 GDDLYVNGRKLSVSIATASPVSTKIHFGINVSS 138 (183)
T ss_dssp TTEEEETTEE-EEEEEEEETTEEEEEEEEESS-
T ss_pred ccceeECCCEEEEEEEecCcchheEEEeEeecc
Confidence 579999999999999999998888886654443
No 37
>PF02415 Chlam_PMP: Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat; InterPro: IPR003368 This repeat is found in polymorphic outer membrane proteins (POMPs) from Chlamydia and other bacteria.
Probab=22.13 E-value=42 Score=18.70 Aligned_cols=9 Identities=33% Similarity=0.708 Sum_probs=7.0
Q ss_pred ccCCceeEe
Q 028411 25 FTGGGTVVV 33 (209)
Q Consensus 25 ~sGGGaVyh 33 (209)
..+|||+|-
T Consensus 19 ~~~GGAIy~ 27 (28)
T PF02415_consen 19 AGGGGAIYA 27 (28)
T ss_pred CCceeEEEe
Confidence 468999984
No 38
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=21.09 E-value=82 Score=23.32 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.3
Q ss_pred hhhhhhCCCCEEEcccCCc
Q 028411 11 IGSVLRDQVPVMKRFTGGG 29 (209)
Q Consensus 11 ld~~~~~gI~vvRR~sGGG 29 (209)
.|||+..||++--++.|+|
T Consensus 17 ~DYl~sqgI~~~i~~~~~~ 35 (101)
T PF12122_consen 17 IDYLASQGIELQIEPEGQG 35 (101)
T ss_dssp HHHHHHTT--EEEE-SSSE
T ss_pred HHHHHHCCCeEEEEECCCC
Confidence 5899999999999985555
No 39
>PRK09184 acyl carrier protein; Provisional
Probab=21.07 E-value=1.9e+02 Score=20.70 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHH
Q 028411 151 DFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQEL 194 (209)
Q Consensus 151 ~~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (209)
...+.+++.+.+.++++.++++.+.. +.|++...+-|-+=+.
T Consensus 6 ~l~~~l~~~I~e~l~~~~i~~~~I~~--d~~l~~~dLglDSld~ 47 (89)
T PRK09184 6 ALERELAELIVEELNLEDVQPESIDA--DAPLYGEGLGLDSIDI 47 (89)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCC--CcccccccCCCcHHHH
Confidence 46778888888888887666777743 4565566666644443
Done!