BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028412
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 297 bits (761), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 158/191 (82%)
Query: 19 KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 78
KNP LYG LAKGQSP F+VFACSDSRVCPSH+L+FQPGEAF+VRN+AN+VPPYDQ KY+G
Sbjct: 31 KNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAG 90
Query: 79 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVK 138
GAAIEYAVLHLKV NIVVIGHS CGGIKGL+S P +GT ++DFIEEWVKI AK+KVK
Sbjct: 91 TGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVK 150
Query: 139 KECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWD 198
+ D F E C +CEKEAVN SLGNLLTYPFVRE +V TLALKG +YDFV G FELW
Sbjct: 151 AQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWG 210
Query: 199 LDFNILPSVSV 209
L+F + + SV
Sbjct: 211 LEFGLSSTFSV 221
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 16 LLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKK 75
L+ ++P + LA+ Q P+FL CSDSRV + +PGE F+ RN+AN+V D
Sbjct: 21 LVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNC 80
Query: 76 YSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 116
S ++YAV L+VE+I++ GHS CGGIK + P+ G
Sbjct: 81 LS----VVQYAVDVLEVEHIIICGHSGCGGIKAAVENPELG 117
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 23/189 (12%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++L+++P+ + LA GQSP++L C+DSRV + +L+ GE F+ RNIAN D
Sbjct: 49 EMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHSDIS 108
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV +LKV++I+V GH CGG K + G + I+ W++ +
Sbjct: 109 FLS----VLQYAVQYLKVKHILVCGHYGCGGAKAAL-----GDSRLGLIDNWLRHIRDVR 159
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLL--TYPFVRESVVKNT------LALKGAH 186
K + ++CK+ ++E + N+L + S+V++ L ++G
Sbjct: 160 RMNAK------YLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVV 213
Query: 187 YDFVNGKFE 195
Y +GK
Sbjct: 214 YGVGDGKLR 222
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
K+L+++P + LA Q+P+ L C+DSRV + I+N GE F+ RNIAN D
Sbjct: 303 KMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHSDMS 362
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV +LKV+ +VV GH CGG + G + I+ W++ +
Sbjct: 363 FLS----VLQYAVQYLKVKRVVVCGHYACGGCAAAL-----GDSRLGLIDNWLRHIRDVR 413
Query: 135 SKVKKECNDLS 145
+ E + ++
Sbjct: 414 RHNQAELSRIT 424
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++ +N + LA Q+P +L ACSDSRV + N +PGE F+ RN+AN V D
Sbjct: 17 RMKEENSTYFKELADHQTPHYLWIACSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFN 76
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV LK+E+I++ GH+ CGGI M+ D G I W+
Sbjct: 77 CLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIW 127
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYD 188
K LS E++ K +NV+ Y R S+VK+ L+L G YD
Sbjct: 128 FKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWERGQKLSLHGWVYD 182
Query: 189 FVNG 192
+G
Sbjct: 183 VNDG 186
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++ +N + LA Q+P +L CSDSRV + N +PGE F+ RN+AN V D
Sbjct: 17 RMKEENSTYFKELADHQTPHYLFIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFN 76
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV LK+E+I++ GH+ CGGI M+ D G I W+
Sbjct: 77 CLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIW 127
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYD 188
K LS E++ K +NV+ Y R S+VK+ L+L G YD
Sbjct: 128 FKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWERGQKLSLHGWVYD 182
Query: 189 FVNG 192
+G
Sbjct: 183 VNDG 186
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++ +N + LA Q+P +L CSDSRV + N +PGE F+ RN+AN V D
Sbjct: 17 RMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFN 76
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV LK+E+I++ GH+ CGGI M+ D G I W+
Sbjct: 77 CLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIW 127
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYD 188
K LS E++ K +NV+ Y R S+VK+ L+L G YD
Sbjct: 128 FKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWERGQKLSLHGWVYD 182
Query: 189 FVNG 192
+G
Sbjct: 183 VNDG 186
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++ +N + LA Q+P +L CSDSRV + N +PGE F+ RN+AN V D
Sbjct: 17 RMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFN 76
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV LK+E+I++ GH+ CGGI M+ D G I W+
Sbjct: 77 CLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIW 127
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYD 188
K LS E++ K +NV+ Y R S+VK+ L+L G YD
Sbjct: 128 FKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWERGQKLSLHGWVYD 182
Query: 189 FVNG 192
+G
Sbjct: 183 VNDG 186
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 16 LLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKK 75
L+ ++P + LA+ Q P+FL CSDSRV + +PGE F+ RN+AN+V D
Sbjct: 18 LVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNC 77
Query: 76 YSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 116
S ++YAV L+VE+I++ GH CGG++ + P+ G
Sbjct: 78 LS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 16 LLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKK 75
L+ ++P + LA+ Q P+FL CSDSRV + +PGE F+ RN+AN+V D
Sbjct: 18 LVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNC 77
Query: 76 YSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG 116
S ++YAV L+VE+I++ GH CGG++ + P+ G
Sbjct: 78 LS----VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELG 114
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++ +N + LA Q+P +L CSDSRV + N +PGE F+ RN+AN V D
Sbjct: 17 RMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFN 76
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV LK+E+I++ GH+ CGGI M+ D G I W+
Sbjct: 77 CLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIW 127
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYD 188
K LS E++ K +NV+ Y R S+VK+ L+L G +D
Sbjct: 128 FKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWERGQKLSLHGWVFD 182
Query: 189 FVNG 192
+G
Sbjct: 183 VNDG 186
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++ +N + LA Q+P +L CSDSR + N +PGE F+ RN+AN V D
Sbjct: 17 RMKEENSTYFKELADHQTPHYLWIGCSDSRAPAEKLTNLEPGELFVHRNVANQVIHTDFN 76
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV LK+E+I++ GH+ CGGI M+ D G I W+
Sbjct: 77 CLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIW 127
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYD 188
K LS E++ K +NV+ Y R S+VK+ L+L G YD
Sbjct: 128 FKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWERGQKLSLHGWVYD 182
Query: 189 FVNG 192
+G
Sbjct: 183 VNDG 186
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
++ +N + LA Q+P +L CS+SRV + N +PGE F+ RN+AN V D
Sbjct: 17 RMKEENSTYFKELADHQTPHYLWIGCSNSRVPAEKLTNLEPGELFVHRNVANQVIHTDFN 76
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAK 134
S ++YAV LK+E+I++ GH+ CGGI M+ D G I W+
Sbjct: 77 CLS----VVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLG-----LINNWLLHIRDIW 127
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT------LALKGAHYD 188
K LS E++ K +NV+ Y R S+VK+ L+L G YD
Sbjct: 128 FKHGHLLGKLSPEKRADMLTK--INVAEQ---VYNLGRTSIVKSAWERGQKLSLHGWVYD 182
Query: 189 FVNG 192
+G
Sbjct: 183 VNDG 186
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 19 KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 78
K+ + +A Q+P++L C+DSRV P+ + N PGE F+ RN+ N+V D S
Sbjct: 26 KDSTYFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLVSNKDLNCMS- 84
Query: 79 AGAAIEYAVLHLKVENIVVIGHSCCGGIK-GLMSIPDNGTTASDFIEEWVKICSSAKSKV 137
+EY V HLK+++I+V GH CG K GL+ P + +I + ++ +K+
Sbjct: 85 ---CLEYTVDHLKIKHILVCGHYNCGACKAGLVWHPKTAGVTNLWISDVREVRDKNAAKL 141
Query: 138 KKECNDLSFEEQCK-NCEKEAVNVSLGNLLTYPFVR 172
D ++++ + N E + NV ++ + R
Sbjct: 142 HGLSADDAWDKMVELNVEAQVFNVCASPIVQAAWAR 177
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
K+ + P+ KGQ+P FL C+DSRV I+ +PG+ F+ RN+AN P D
Sbjct: 43 KVTSEEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPED-- 100
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP------DNGTTASDFIEEWVK 128
+ A + YA++++ V +++V+GH+ CGG P GT ++E ++
Sbjct: 101 --DSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPGGTPLVRYLEPIIR 158
Query: 129 ICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 159
+ S + NDL +E K K VN
Sbjct: 159 LKHSLPE--GSDVNDL-IKENVKMAVKNVVN 186
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 15 KLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 74
K+ + P+ KGQ+P FL C+DSRV I+ +PG+ F+ RN+AN P D
Sbjct: 47 KVTSEEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKPGDVFVQRNVANQFKPED-- 104
Query: 75 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP------DNGTTASDFIEEWVK 128
+ A + YA++++ V +++V+GH+ CGG P GT ++E ++
Sbjct: 105 --DSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAFDQPLPTEENPGGTPLVRYLEPIIR 162
Query: 129 ICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 159
+ S + NDL +E K K VN
Sbjct: 163 LKHSLPE--GSDVNDL-IKENVKMAVKNVVN 190
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 13/198 (6%)
Query: 7 EDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIAN 66
E +AG + ++ D LA GQ P ++F C+DSRV I + G+ F+VR +
Sbjct: 26 ERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGH 85
Query: 67 MVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEW 126
++ S +IEYAV L V IVV+GH CG + ++ ++GT ++ +
Sbjct: 86 VID-------SAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDV 138
Query: 127 VKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTY-PFVRESVVKNTLALKGA 185
V+ A S + + LS + E+ V+ ++ L+ + E + +LA+ G
Sbjct: 139 VE--RVAPSVLLGRRDGLS---RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGV 193
Query: 186 HYDFVNGKFELWDLDFNI 203
Y +G+ L D NI
Sbjct: 194 TYQLDDGRAVLRDHIGNI 211
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 13/198 (6%)
Query: 7 EDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIAN 66
E +AG + ++ D LA GQ P ++F C+DSRV I + G+ F+VR +
Sbjct: 24 ERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGH 83
Query: 67 MVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEW 126
++ S +IEYAV L V IVV+GH CG + ++ ++GT ++ +
Sbjct: 84 VID-------SAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDV 136
Query: 127 VKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTY-PFVRESVVKNTLALKGA 185
V+ A S + + LS + E+ V+ ++ L+ + E + +LA+ G
Sbjct: 137 VE--RVAPSVLLGRRDGLS---RVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGV 191
Query: 186 HYDFVNGKFELWDLDFNI 203
Y +G+ L D NI
Sbjct: 192 TYQLDDGRAVLRDHIGNI 209
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 28 AKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAV 87
AKGQSP L CSDSR + L PGE F +N+AN+ D A +E+A+
Sbjct: 40 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANICHSEDLT----LKATLEFAI 94
Query: 88 LHLKVENIVVIGHSCCGGIKGLMS 111
+ LKV +++ GH+ CGGIK ++
Sbjct: 95 ICLKVNKVIICGHTDCGGIKTCLT 118
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 13 LTKLLRKNPDL-YGALAK-GQSPKFLVFACSDSRVCP--SHILNFQPGEAFMVRNIANMV 68
+ +LR+N D + L+ SPK + C DSR+ L G+A +++N N+V
Sbjct: 3 IKDILRENQDFRFRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIV 62
Query: 69 PPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCG 104
D A AI YA L I+++GH+ CG
Sbjct: 63 ---DDGVIRSAAVAI-YA---LGDNEIIIVGHTDCG 91
>pdb|3TEO|A Chain A, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|B Chain B, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|C Chain C, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|D Chain D, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|E Chain E, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|F Chain F, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|G Chain G, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|H Chain H, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|I Chain I, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|J Chain J, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|K Chain K, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|L Chain L, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|M Chain M, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|N Chain N, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|O Chain O, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
pdb|3TEO|P Chain P, Apo Form Of Carbon Disulfide Hydrolase (Selenomethionine
Form)
Length = 204
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 34 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL---HL 90
+ V C D RV L QP +A + RN +V AI A L
Sbjct: 29 RLWVLTCXDERVHIEQSLGIQPDDAHIYRNAGGIV----------TDDAIRSASLTTNFF 78
Query: 91 KVENIVVIGHSCCGGIK 107
+ I+V+ H+ CG ++
Sbjct: 79 GTKEIIVVTHTDCGXLR 95
>pdb|3TEN|A Chain A, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|B Chain B, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|C Chain C, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|D Chain D, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|E Chain E, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|F Chain F, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|G Chain G, Holo Form Of Carbon Disulfide Hydrolase
pdb|3TEN|H Chain H, Holo Form Of Carbon Disulfide Hydrolase
Length = 204
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 34 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL---HL 90
+ V C D RV L QP +A + RN +V AI A L
Sbjct: 29 RLWVLTCMDERVHIEQSLGIQPDDAHIYRNAGGIV----------TDDAIRSASLTTNFF 78
Query: 91 KVENIVVIGHSCCGGIK 107
+ I+V+ H+ CG ++
Sbjct: 79 GTKEIIVVTHTDCGMLR 95
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 31/170 (18%)
Query: 25 GALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIE 84
G L S + AC D+R+ +L + GEA ++RN +V ++
Sbjct: 29 GPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVV-------TDDVIRSLA 81
Query: 85 YAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDL 144
+ L I+++ H+ CG + F ++ K ++ ++ +
Sbjct: 82 ISQRLLGTREIILLHHTDCGMLT--------------FTDDDFKRAIQDETGIRPTWSPE 127
Query: 145 SFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKF 194
S+ + E V SL + PF V K+T +L+G +D GK
Sbjct: 128 SYPDAV-----EDVRQSLRRIEVNPF----VTKHT-SLRGFVFDVATGKL 167
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase
pdb|3VRK|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase / Thiocyanate Complex
Length = 219
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 32 SPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMV 68
S + V AC D+R+ +L Q GEA ++RN ++
Sbjct: 36 SRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVI 72
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 71 YDQKKYS---GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWV 127
+ K+YS G +E ++ L + N+ +IGHS I G+ S T D I +
Sbjct: 73 FSTKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIAS-----THVGDRISDIT 127
Query: 128 KICSS 132
IC S
Sbjct: 128 XICPS 132
>pdb|2GDR|A Chain A, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|B Chain B, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|C Chain C, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|D Chain D, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|E Chain E, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|F Chain F, Crystal Structure Of A Bacterial Glutathione Transferase
Length = 202
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 106 IKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNL 165
+ G P NG+ +++W+ SS K + + ++ KN ++++N LG +
Sbjct: 77 VPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQV 136
>pdb|2DSA|A Chain A, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|B Chain B, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|C Chain C, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|D Chain D, Ternary Complex Of Bphk, A Bacterial Gst
Length = 203
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 106 IKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNL 165
+ G P NG+ +++W+ SS K + + ++ KN ++++N LG +
Sbjct: 77 VPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQV 136
>pdb|3LAS|A Chain A, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
pdb|3LAS|B Chain B, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
Length = 166
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 32/174 (18%)
Query: 22 DLYGALAKGQSPK--FLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79
DL+G PK + C DSR+ + L G+A ++RN V
Sbjct: 18 DLHGTAHLPLKPKTRVAIVTCMDSRLHVAPALGLALGDAHILRNAGGRVT-------DDV 70
Query: 80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 139
++ + L IVV+ H+ CG T ++F E+ K +
Sbjct: 71 IRSLVISEQQLGTSEIVVLHHTDCGA---------QTFTNAEFTEQL-------KRDLAV 114
Query: 140 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 193
+ D F +E+V + L P + E ++ + GA YD G+
Sbjct: 115 DAGDQDFLPFTDI--EESVREDIALLKNSPLIPEDII-----ISGAIYDVDTGR 161
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKF 194
S VKK C D + + CE+ A +SLG F VV + L +H D G+
Sbjct: 693 SVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRL 752
Query: 195 ELWDL 199
+ L
Sbjct: 753 HMKTL 757
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKF 194
S VKK C D + + CE+ A +SLG F VV + L +H D G+
Sbjct: 693 SVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGRL 752
Query: 195 ELWDL 199
+ L
Sbjct: 753 HMKTL 757
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 45 VCPSHILNFQPGEAFMVRNIANMVPPYDQKK 75
+C H+ F G+ V AN +P Y+Q+K
Sbjct: 47 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQK 77
>pdb|1KJS|A Chain A, Nmr Solution Structure Of C5a At Ph 5.2, 303k, 20
Structures
Length = 74
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 135 SKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 193
S VKK C D + + CE+ A +SLG F VV + L +H D G+
Sbjct: 16 SVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGR 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,358,309
Number of Sequences: 62578
Number of extensions: 241900
Number of successful extensions: 643
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 40
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)