Query 028412
Match_columns 209
No_of_seqs 181 out of 1058
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00416 carbonate dehydratase 100.0 3.1E-58 6.7E-63 389.4 21.9 204 4-207 47-255 (258)
2 PLN03014 carbonic anhydrase 100.0 4.5E-58 9.7E-63 397.3 22.2 206 4-209 127-336 (347)
3 PLN03019 carbonic anhydrase 100.0 5.8E-58 1.3E-62 394.8 21.9 204 5-209 123-330 (330)
4 PLN03006 carbonate dehydratase 100.0 1.5E-56 3.2E-61 383.3 21.3 197 5-203 81-281 (301)
5 PRK10437 carbonic anhydrase; P 100.0 4.9E-55 1.1E-59 362.1 21.8 188 5-201 3-195 (220)
6 cd00884 beta_CA_cladeB Carboni 100.0 2.1E-55 4.6E-60 358.3 19.2 184 13-197 2-190 (190)
7 cd00883 beta_CA_cladeA Carboni 100.0 1.4E-54 3E-59 351.8 18.7 170 19-197 11-182 (182)
8 PLN02154 carbonic anhydrase 100.0 1E-53 2.2E-58 363.8 21.7 198 4-202 74-275 (290)
9 COG0288 CynT Carbonic anhydras 100.0 4.3E-53 9.2E-58 348.5 19.8 193 5-204 3-202 (207)
10 PRK15219 carbonic anhydrase; P 100.0 1.5E-52 3.3E-57 352.5 19.8 180 6-197 57-244 (245)
11 cd03378 beta_CA_cladeC Carboni 100.0 4.1E-48 8.8E-53 305.2 16.4 144 4-197 3-154 (154)
12 PF00484 Pro_CA: Carbonic anhy 100.0 4.7E-47 1E-51 299.3 14.0 152 35-194 1-153 (153)
13 cd00382 beta_CA Carbonic anhyd 100.0 5.1E-45 1.1E-49 277.0 14.6 119 31-197 1-119 (119)
14 cd03379 beta_CA_cladeD Carboni 100.0 5E-42 1.1E-46 268.1 13.1 141 31-196 1-141 (142)
15 KOG1578 Predicted carbonic anh 100.0 2.4E-41 5.1E-46 282.6 12.7 197 4-201 61-261 (276)
16 KOG1578 Predicted carbonic anh 97.9 3.5E-07 7.5E-12 77.5 -4.8 170 25-195 20-247 (276)
17 TIGR02742 TrbC_Ftype type-F co 71.0 22 0.00047 27.3 6.7 68 5-91 37-112 (130)
18 COG1254 AcyP Acylphosphatases 70.2 4 8.7E-05 29.4 2.3 20 179-198 29-48 (92)
19 PF10070 DUF2309: Uncharacteri 69.0 13 0.00029 36.8 6.4 38 164-201 540-583 (788)
20 cd04321 ScAspRS_mt_like_N ScAs 61.7 12 0.00025 26.1 3.4 26 179-204 1-28 (86)
21 PF00355 Rieske: Rieske [2Fe-2 54.9 4.2 9.2E-05 28.6 0.1 15 181-195 65-79 (97)
22 PF08184 Cuticle_2: Cuticle pr 54.8 6.1 0.00013 25.0 0.8 13 183-195 7-19 (59)
23 PF01707 Peptidase_C9: Peptida 48.9 6.4 0.00014 32.2 0.3 38 163-206 138-176 (202)
24 cd03528 Rieske_RO_ferredoxin R 48.5 6.8 0.00015 27.6 0.3 15 181-195 61-75 (98)
25 PRK14432 acylphosphatase; Prov 47.6 24 0.00053 25.2 3.2 20 179-198 27-46 (93)
26 PF04019 DUF359: Protein of un 47.3 70 0.0015 24.2 5.7 77 26-110 5-81 (121)
27 cd03478 Rieske_AIFL_N AIFL (ap 46.9 6.4 0.00014 27.8 -0.0 15 181-195 60-74 (95)
28 PF00009 GTP_EFTU: Elongation 46.2 13 0.00029 29.3 1.8 15 91-105 2-16 (188)
29 cd03548 Rieske_RO_Alpha_OMO_CA 44.2 11 0.00025 28.6 1.0 17 181-197 77-93 (136)
30 PF10500 SR-25: Nuclear RNA-sp 44.0 10 0.00023 31.7 0.8 43 160-203 149-192 (225)
31 PF05952 ComX: Bacillus compet 43.7 27 0.00059 22.9 2.6 25 161-185 5-29 (57)
32 PF05896 NQRA: Na(+)-transloca 43.5 26 0.00057 30.1 3.2 42 3-46 112-159 (257)
33 PRK14423 acylphosphatase; Prov 43.4 38 0.00082 24.1 3.6 20 179-198 30-49 (92)
34 PRK14445 acylphosphatase; Prov 42.9 39 0.00085 23.9 3.6 20 179-198 29-48 (91)
35 PRK14440 acylphosphatase; Prov 42.4 35 0.00075 24.3 3.2 20 179-198 28-47 (90)
36 TIGR02377 MocE_fam_FeS Rieske 42.4 10 0.00022 27.2 0.5 14 181-194 63-76 (101)
37 cd03473 Rieske_CMP_Neu5Ac_hydr 41.9 8.9 0.00019 28.5 0.1 16 181-196 71-86 (107)
38 TIGR02378 nirD_assim_sml nitri 41.2 10 0.00022 27.3 0.3 15 181-195 68-82 (105)
39 cd03529 Rieske_NirD Assimilato 40.6 9.7 0.00021 27.4 0.1 14 181-194 67-80 (103)
40 cd01891 TypA_BipA TypA (tyrosi 40.1 20 0.00042 28.4 1.9 14 92-105 2-15 (194)
41 COG2146 {NirD} Ferredoxin subu 39.2 12 0.00026 27.4 0.5 14 181-194 67-80 (106)
42 PRK11440 putative hydrolase; P 39.1 64 0.0014 25.6 4.7 45 52-106 91-135 (188)
43 PRK09511 nirD nitrite reductas 38.8 11 0.00024 27.7 0.2 14 181-194 71-84 (108)
44 PRK14434 acylphosphatase; Prov 38.5 50 0.0011 23.6 3.6 20 179-198 27-47 (92)
45 PRK14430 acylphosphatase; Prov 38.1 26 0.00057 25.0 2.1 20 179-198 29-48 (92)
46 PRK14429 acylphosphatase; Prov 37.9 48 0.0011 23.4 3.4 19 179-197 27-45 (90)
47 PRK09965 3-phenylpropionate di 37.6 12 0.00027 27.0 0.3 14 181-194 63-76 (106)
48 PRK14451 acylphosphatase; Prov 36.9 46 0.001 23.6 3.2 20 179-198 28-47 (89)
49 PF00708 Acylphosphatase: Acyl 36.9 52 0.0011 23.0 3.4 20 179-198 29-48 (91)
50 cd03474 Rieske_T4moC Toluene-4 36.5 14 0.00031 26.6 0.5 14 181-194 62-75 (108)
51 PRK14449 acylphosphatase; Prov 36.3 55 0.0012 23.1 3.5 20 179-198 28-47 (90)
52 PRK14448 acylphosphatase; Prov 36.2 47 0.001 23.5 3.1 20 179-198 27-46 (90)
53 cd03530 Rieske_NirD_small_Baci 36.0 11 0.00024 26.6 -0.2 14 181-194 62-75 (98)
54 PF02983 Pro_Al_protease: Alph 36.0 70 0.0015 21.0 3.7 24 178-201 21-44 (62)
55 PF14053 DUF4248: Domain of un 35.5 66 0.0014 21.8 3.6 37 3-39 18-55 (69)
56 PRK14422 acylphosphatase; Prov 35.3 51 0.0011 23.5 3.2 20 179-198 31-50 (93)
57 PRK14436 acylphosphatase; Prov 35.2 57 0.0012 23.2 3.4 20 179-198 29-48 (91)
58 PRK00075 cbiD cobalt-precorrin 35.2 3.4E+02 0.0074 24.5 10.1 21 81-102 236-256 (361)
59 COG1116 TauB ABC-type nitrate/ 35.1 22 0.00048 30.3 1.5 14 92-105 29-42 (248)
60 PRK14426 acylphosphatase; Prov 35.0 55 0.0012 23.3 3.3 20 179-198 29-48 (92)
61 PRK11181 23S rRNA (guanosine-2 34.2 1.6E+02 0.0035 24.7 6.6 74 21-104 55-133 (244)
62 PRK14444 acylphosphatase; Prov 33.4 59 0.0013 23.1 3.3 20 179-198 29-48 (92)
63 cd04318 EcAsnRS_like_N EcAsnRS 33.4 68 0.0015 21.7 3.5 25 180-204 2-27 (82)
64 TIGR00312 cbiD cobalamin biosy 33.0 3.6E+02 0.0079 24.2 9.5 21 81-102 223-243 (347)
65 cd01890 LepA LepA subfamily. 32.3 27 0.00057 26.8 1.4 12 93-104 1-12 (179)
66 PRK14441 acylphosphatase; Prov 32.0 49 0.0011 23.6 2.7 20 179-198 30-49 (93)
67 cd03467 Rieske Rieske domain; 32.0 16 0.00035 25.7 0.1 15 181-195 62-76 (98)
68 cd01878 HflX HflX subfamily. 31.4 33 0.00072 27.2 1.9 15 91-105 40-54 (204)
69 PF13580 SIS_2: SIS domain; PD 31.0 65 0.0014 24.3 3.4 38 52-99 100-138 (138)
70 PRK14433 acylphosphatase; Prov 30.6 70 0.0015 22.5 3.2 20 179-198 26-45 (87)
71 PRK14437 acylphosphatase; Prov 30.5 64 0.0014 23.9 3.1 20 179-198 48-67 (109)
72 cd01887 IF2_eIF5B IF2/eIF5B (i 30.4 33 0.00071 25.8 1.6 13 93-105 1-13 (168)
73 PRK14421 acylphosphatase; Prov 30.3 73 0.0016 23.1 3.4 20 179-198 29-48 (99)
74 PRK14427 acylphosphatase; Prov 29.9 83 0.0018 22.5 3.6 20 179-198 31-50 (94)
75 COG4707 Uncharacterized protei 29.5 53 0.0011 24.0 2.4 26 160-190 49-76 (107)
76 PRK14420 acylphosphatase; Prov 28.8 50 0.0011 23.3 2.2 19 179-197 27-45 (91)
77 PRK14428 acylphosphatase; Prov 28.8 86 0.0019 22.7 3.5 20 179-198 33-52 (97)
78 PRK14438 acylphosphatase; Prov 28.6 88 0.0019 22.1 3.5 19 179-197 28-46 (91)
79 PRK14425 acylphosphatase; Prov 28.4 52 0.0011 23.5 2.3 20 179-198 31-50 (94)
80 cd04323 AsnRS_cyto_like_N AsnR 28.2 76 0.0017 21.7 3.1 26 179-204 1-27 (84)
81 PRK14446 acylphosphatase; Prov 28.1 63 0.0014 22.9 2.7 21 178-198 26-46 (88)
82 PRK14452 acylphosphatase; Prov 28.0 76 0.0017 23.4 3.2 20 179-198 45-64 (107)
83 KOG4387 Ornithine decarboxylas 27.7 59 0.0013 26.5 2.6 23 78-100 120-142 (191)
84 cd01012 YcaC_related YcaC rela 27.7 94 0.002 23.8 3.9 45 54-108 60-104 (157)
85 cd04167 Snu114p Snu114p subfam 27.6 36 0.00077 27.5 1.5 13 93-105 1-13 (213)
86 cd03531 Rieske_RO_Alpha_KSH Th 27.4 32 0.00069 25.3 1.1 16 181-197 63-78 (115)
87 PF02100 ODC_AZ: Ornithine dec 27.3 48 0.001 24.4 2.0 29 77-105 41-69 (108)
88 cd04169 RF3 RF3 subfamily. Pe 27.1 42 0.00092 28.6 1.9 14 92-105 2-15 (267)
89 PF00561 Abhydrolase_1: alpha/ 27.1 55 0.0012 25.4 2.5 28 78-106 29-56 (230)
90 cd04316 ND_PkAspRS_like_N ND_P 26.8 93 0.002 22.4 3.5 27 178-204 13-40 (108)
91 cd04160 Arfrp1 Arfrp1 subfamil 26.8 38 0.00083 25.5 1.5 12 94-105 1-12 (167)
92 TIGR03736 PRTRC_ThiF PRTRC sys 26.4 1.1E+02 0.0025 25.8 4.4 32 167-198 211-242 (244)
93 PRK14443 acylphosphatase; Prov 26.4 63 0.0014 23.2 2.4 20 179-198 29-48 (93)
94 KOG4780 Uncharacterized conser 25.9 34 0.00074 31.5 1.1 33 39-71 390-422 (467)
95 COG4634 Uncharacterized protei 25.6 72 0.0016 23.8 2.6 24 19-42 54-78 (113)
96 cd01897 NOG NOG1 is a nucleola 25.5 46 0.00099 25.1 1.7 13 93-105 1-13 (168)
97 PRK14435 acylphosphatase; Prov 25.5 59 0.0013 23.0 2.1 20 179-198 27-46 (90)
98 COG3002 Uncharacterized protei 24.8 58 0.0013 31.8 2.4 24 86-109 551-591 (880)
99 PRK14424 acylphosphatase; Prov 24.8 61 0.0013 23.3 2.1 20 179-198 32-51 (94)
100 cd01015 CSHase N-carbamoylsarc 24.3 1.7E+02 0.0036 22.9 4.8 20 82-101 104-123 (179)
101 PF01764 Lipase_3: Lipase (cla 24.1 88 0.0019 22.9 3.0 28 81-108 52-79 (140)
102 PF13806 Rieske_2: Rieske-like 23.3 31 0.00066 25.1 0.3 13 182-194 69-81 (104)
103 cd01013 isochorismatase Isocho 22.8 1.8E+02 0.0038 23.5 4.7 42 53-104 113-154 (203)
104 PRK14447 acylphosphatase; Prov 22.5 1E+02 0.0022 22.1 2.8 19 179-197 29-48 (95)
105 PF01973 MAF_flag10: Protein o 22.3 3.7E+02 0.008 20.7 7.5 20 80-100 144-163 (170)
106 PF08621 RPAP1_N: RPAP1-like, 22.2 82 0.0018 19.9 2.1 27 1-27 12-39 (49)
107 PRK01160 hypothetical protein; 22.2 3E+02 0.0066 22.2 5.8 76 27-110 55-134 (178)
108 cd04337 Rieske_RO_Alpha_Cao Ca 21.7 35 0.00075 25.8 0.3 15 181-196 79-93 (129)
109 PRK14442 acylphosphatase; Prov 21.6 1.3E+02 0.0028 21.3 3.3 20 179-198 29-48 (91)
110 cd01889 SelB_euk SelB subfamil 21.6 58 0.0013 25.6 1.6 12 94-105 2-13 (192)
111 PF07453 NUMOD1: NUMOD1 domain 21.4 1E+02 0.0022 17.6 2.3 14 185-198 4-17 (37)
112 cd03535 Rieske_RO_Alpha_NDO Ri 21.2 34 0.00073 25.5 0.1 16 181-197 66-81 (123)
113 PTZ00331 alpha/beta hydrolase; 21.1 2.1E+02 0.0045 23.3 4.9 62 41-106 96-160 (212)
114 PRK14450 acylphosphatase; Prov 21.1 1.3E+02 0.0028 21.2 3.2 19 179-197 27-46 (91)
115 PF00857 Isochorismatase: Isoc 21.0 1.9E+02 0.0042 22.0 4.5 44 55-108 85-128 (174)
116 PF08477 Miro: Miro-like prote 21.0 69 0.0015 22.6 1.8 12 94-105 1-12 (119)
117 COG2885 OmpA Outer membrane pr 20.8 1.1E+02 0.0024 24.3 3.2 20 87-106 109-128 (190)
118 PF01888 CbiD: CbiD; InterPro 20.6 61 0.0013 27.9 1.6 33 55-101 220-252 (261)
119 PF01011 PQQ: PQQ enzyme repea 20.6 84 0.0018 18.1 1.8 16 185-200 13-28 (38)
120 PF12697 Abhydrolase_6: Alpha/ 20.6 97 0.0021 23.5 2.7 28 80-107 53-80 (228)
121 cd01883 EF1_alpha Eukaryotic e 20.5 56 0.0012 26.6 1.3 12 94-105 1-12 (219)
122 KOG3360 Acylphosphatase [Energ 20.3 83 0.0018 22.9 2.0 19 178-196 32-50 (98)
123 KOG0025 Zn2+-binding dehydroge 20.3 1.6E+02 0.0034 26.2 4.0 41 48-99 153-193 (354)
124 PRK13730 conjugal transfer pil 20.1 3.3E+02 0.0073 22.7 5.7 38 3-41 126-171 (212)
No 1
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=3.1e-58 Score=389.35 Aligned_cols=204 Identities=71% Similarity=1.206 Sum_probs=172.5
Q ss_pred chHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412 4 DAYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79 (209)
Q Consensus 4 ~~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~ 79 (209)
..++.++++|++|.+ +++++|..++.||+|+++|||||||||+|+.|||++|||+||+||+||+|+++|....+++
T Consensus 47 ~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~ 126 (258)
T PLN00416 47 DAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGV 126 (258)
T ss_pred HHHHHHHHHHHHHHhcccccCHHHHHhhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccc
Confidence 345677788888876 4677889999999999999999999999999999999999999999999998775333467
Q ss_pred hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCC-CCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHH
Q 028412 80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG-TTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAV 158 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~-~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV 158 (209)
++|||||+.+|+|++|||||||+||||+|+++..... ....+++..|+....|+...........++.+.++.++++||
T Consensus 127 ~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV 206 (258)
T PLN00416 127 GAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAV 206 (258)
T ss_pred hhHHHHHHHHhCCCEEEEecCCCchHHHHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988632211 122357999999888887665444444455666566778999
Q ss_pred HHHHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCCc
Q 028412 159 NVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSV 207 (209)
Q Consensus 159 ~~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~~~~~ 207 (209)
++|+++|+++|+|++++++|++.||||+||++||+|++++++.+.-|.-
T Consensus 207 ~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG~v~~~~~~~~~~p~~ 255 (258)
T PLN00416 207 NVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVKGTFDLWELDFKTTPAF 255 (258)
T ss_pred HHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEeccCcCCCCCc
Confidence 9999999999999999999999999999999999999999998776654
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=4.5e-58 Score=397.32 Aligned_cols=206 Identities=70% Similarity=1.185 Sum_probs=182.2
Q ss_pred chHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412 4 DAYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79 (209)
Q Consensus 4 ~~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~ 79 (209)
+.++.++++|++|.+ .++++|.++.+||+|+++||+||||||+|+.+||.+|||+||+||+||+|+++|...+.++
T Consensus 127 ~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v 206 (347)
T PLN03014 127 DPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGV 206 (347)
T ss_pred CHHHHHHHHHHHHHhhccccCHHHHHhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccc
Confidence 346899999999976 5778999999999999999999999999999999999999999999999999775333457
Q ss_pred hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHH
Q 028412 80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 159 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~ 159 (209)
+++||||+.+|+|++|||||||+||||+|+++....+....++|.+|+..+.|++.....+....++.++++.++++||+
T Consensus 207 ~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~ 286 (347)
T PLN03014 207 GAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVN 286 (347)
T ss_pred hhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999987543333446789999999999987665555555677777677889999
Q ss_pred HHHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCCcCC
Q 028412 160 VSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV 209 (209)
Q Consensus 160 ~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~~~~~~~ 209 (209)
.|+++|+++|+|++++++|+|.||||+||++||+|++++.+..+.|+.++
T Consensus 287 ~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 287 VSLANLLTYPFVREGLVKGTLALKGGYYDFVKGAFELWGLEFGLSETSSV 336 (347)
T ss_pred HHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCceEEEeccccccCCcccc
Confidence 99999999999999999999999999999999999999999999998764
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=5.8e-58 Score=394.84 Aligned_cols=204 Identities=70% Similarity=1.192 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchh
Q 028412 5 AYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAG 80 (209)
Q Consensus 5 ~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~ 80 (209)
.++.++++|++|.. .+|++|..++.||+|+++||+||||||+|+.|||.+|||+||+||+||+|+|+|...+++++
T Consensus 123 ale~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~ 202 (330)
T PLN03019 123 PVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVG 202 (330)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHhhccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccc
Confidence 36889999999976 67889999999999999999999999999999999999999999999999998754445688
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHHH
Q 028412 81 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNV 160 (209)
Q Consensus 81 asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~~ 160 (209)
+|||||+.+|+|++|||||||+||||+|+++....+....++|.+|++.+.|+........+...+.++++.+++ ||+.
T Consensus 203 aSIEYAV~~L~V~~IVV~GHs~CGaVkAal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~ 281 (330)
T PLN03019 203 AAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNV 281 (330)
T ss_pred hhHHHHHHHhCCCEEEEecCCCchHHHHHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999998754333344678999999998988765443344456666555665 9999
Q ss_pred HHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCCcCC
Q 028412 161 SLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV 209 (209)
Q Consensus 161 ~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~~~~~~~ 209 (209)
|+++|+++|+|++++++|+|.||||+||++||+|++++.+..+.|+.++
T Consensus 282 qv~nL~t~P~V~e~v~~G~L~I~G~~YDl~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 282 SLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred HHHHHHhCHHHHHHHHcCCcEEEEEEEECCCceEEEEccccCcCCCCcC
Confidence 9999999999999999999999999999999999999999999998764
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.5e-56 Score=383.29 Aligned_cols=197 Identities=46% Similarity=0.882 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchh
Q 028412 5 AYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAG 80 (209)
Q Consensus 5 ~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~ 80 (209)
.++.+++++.+|.. .++++|.++++||+|+++||+||||||+|+.|||.+|||+||+||+||+|+|+|... .++.
T Consensus 81 ~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~ 159 (301)
T PLN03006 81 VFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGP-TETK 159 (301)
T ss_pred HHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccc-cchh
Confidence 45778888888765 678899999999999999999999999999999999999999999999999887532 4578
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHHH
Q 028412 81 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNV 160 (209)
Q Consensus 81 asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~~ 160 (209)
+|||||+.+|+|++|||||||+||||+|+++..+.+ ...++|.+|+..+.|++...........++++++.++++||+.
T Consensus 160 aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~ 238 (301)
T PLN03006 160 AALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINH 238 (301)
T ss_pred hhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754433 2456899999887777765443323335667777888899999
Q ss_pred HHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCC
Q 028412 161 SLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNI 203 (209)
Q Consensus 161 ~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~ 203 (209)
|+++|++||+|++++++|+|.||||+||+.||+++.+++++..
T Consensus 239 sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~ 281 (301)
T PLN03006 239 SLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAA 281 (301)
T ss_pred HHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccc
Confidence 9999999999999999999999999999999999999998844
No 5
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=4.9e-55 Score=362.10 Aligned_cols=188 Identities=26% Similarity=0.424 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchh
Q 028412 5 AYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAG 80 (209)
Q Consensus 5 ~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~ 80 (209)
++++++++|++|.+ .+|++|+.+..+|+|+++|||||||||+|+.+||++|||+||+||+||+|++.|. +++
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 57899999999965 5788999999999999999999999999999999999999999999999998764 378
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHHH
Q 028412 81 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNV 160 (209)
Q Consensus 81 asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~~ 160 (209)
+|||||+.+|+|++|||||||+||+|+|+++.. ..+++..|+..+.|+...........+..+..+.++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 235799999998888765443333344455667788899999
Q ss_pred HHHHHhcChhHHHHHhcC-ceeEEEEEEEccCCeEEEEeccC
Q 028412 161 SLGNLLTYPFVRESVVKN-TLALKGAHYDFVNGKFELWDLDF 201 (209)
Q Consensus 161 ~v~~L~~~p~i~~~v~~g-~l~v~G~~yDi~tG~v~~~~~~~ 201 (209)
|+++|+++|+|++++++| +|+||||+||++||+|+.++...
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~ 195 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTA 195 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCC
Confidence 999999999999999999 69999999999999998887654
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.1e-55 Score=358.31 Aligned_cols=184 Identities=49% Similarity=0.788 Sum_probs=156.5
Q ss_pred HHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcc-cccchhHHHHHHH
Q 028412 13 LTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK-KYSGAGAAIEYAV 87 (209)
Q Consensus 13 ~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~-~~~~~~asleyav 87 (209)
|++|.+ +++++|++++.||+|+++|||||||||+|+.+|+.+|||+||+||+||+|++++.+ .+.++++|||||+
T Consensus 2 ~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav 81 (190)
T cd00884 2 FRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAV 81 (190)
T ss_pred hHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHHH
Confidence 455543 57788999999999999999999999999999999999999999999999986532 2346889999999
Q ss_pred HhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhc
Q 028412 88 LHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLT 167 (209)
Q Consensus 88 ~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 167 (209)
.+|+|++|||||||+||||+|+++... +....+.+..|+..+.|+......+.+..+..+..+.+++.||++|+++|++
T Consensus 82 ~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~ 160 (190)
T cd00884 82 AVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLLT 160 (190)
T ss_pred HHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999986432 1223458999999998888765544333344556677889999999999999
Q ss_pred ChhHHHHHhcCceeEEEEEEEccCCeEEEE
Q 028412 168 YPFVRESVVKNTLALKGAHYDFVNGKFELW 197 (209)
Q Consensus 168 ~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~ 197 (209)
+|+|++++++|+|+||||+||+.||+|+.+
T Consensus 161 ~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 161 YPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred CHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 999999999999999999999999999753
No 7
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.4e-54 Score=351.82 Aligned_cols=170 Identities=35% Similarity=0.569 Sum_probs=146.9
Q ss_pred hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEe
Q 028412 19 KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVI 98 (209)
Q Consensus 19 ~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~ 98 (209)
++|++|.++..||+|+++|||||||||+|+.+||.+|||+||+||+||+|++.+. ++++|||||+.+|||++||||
T Consensus 11 ~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~~L~v~~IvV~ 86 (182)
T cd00883 11 KDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVDVLKVKHIIVC 86 (182)
T ss_pred cCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHHhcCCCEEEEe
Confidence 6788999999999999999999999999999999999999999999999998764 478999999999999999999
Q ss_pred ccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCC-ChHHHhhHHHHHHHHHHHHHHhcChhHHHHHhc
Q 028412 99 GHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDL-SFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVK 177 (209)
Q Consensus 99 GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~ 177 (209)
|||+|||++|+++.. ..+.+.+|+....++........... +..+..+.++++||++|+++|+++|+|++++++
T Consensus 87 GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~ 161 (182)
T cd00883 87 GHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPIVQDAWKR 161 (182)
T ss_pred cCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHc
Confidence 999999999988642 23579999988877665433222221 334455677889999999999999999999999
Q ss_pred -CceeEEEEEEEccCCeEEEE
Q 028412 178 -NTLALKGAHYDFVNGKFELW 197 (209)
Q Consensus 178 -g~l~v~G~~yDi~tG~v~~~ 197 (209)
|+|.||||+||++||+|+.+
T Consensus 162 ~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 162 GQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CCCeEEEEEEEEcCccEEEeC
Confidence 89999999999999998753
No 8
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1e-53 Score=363.79 Aligned_cols=198 Identities=41% Similarity=0.749 Sum_probs=164.0
Q ss_pred chHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412 4 DAYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79 (209)
Q Consensus 4 ~~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~ 79 (209)
..++++++++++|.. .++++|+.++.||+|+++||+||||||+|+.|||++|||+||+||+||+|++++.. ..++
T Consensus 74 ~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~~~~ 152 (290)
T PLN02154 74 DFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-PTET 152 (290)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-ccch
Confidence 346778888888865 56788899999999999999999999999999999999999999999999987542 2357
Q ss_pred hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHH
Q 028412 80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 159 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~ 159 (209)
++|||||+.+|+|++|||||||+||||+|+++.........+++.+|+....++........+...+++.++.++++||+
T Consensus 153 ~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~NV~ 232 (290)
T PLN02154 153 NSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKESIK 232 (290)
T ss_pred hhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999986422212234689999987666544322222223445566677889999
Q ss_pred HHHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCC
Q 028412 160 VSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFN 202 (209)
Q Consensus 160 ~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~ 202 (209)
.|+++|+++|+|++++++|+|+||||+||+.||+|+.++...+
T Consensus 233 ~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 233 DSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 9999999999999999999999999999999999988887653
No 9
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-53 Score=348.46 Aligned_cols=193 Identities=32% Similarity=0.508 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHHhh----CchhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412 5 AYEDAIAGLTKLLRK----NPDLYGALA-KGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79 (209)
Q Consensus 5 ~~~~~l~~~~~~~~~----~~~~~~~l~-~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~ 79 (209)
.+++++++|++|.+. ++.+|..+. .+|+|+++|||||||||+||.+||++|||+||+||+||+|++++. ++
T Consensus 3 ~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~----~~ 78 (207)
T COG0288 3 ALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG----SV 78 (207)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc----ch
Confidence 578999999999883 567777764 569999999999999999999999999999999999999998753 48
Q ss_pred hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChH-HHhhHHHHHHH
Q 028412 80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFE-EQCKNCEKEAV 158 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~nV 158 (209)
++|||||+.+|||++|||||||+|||++|+++....+.. .+..|+....+.........+..... ++....++.||
T Consensus 79 l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV 155 (207)
T COG0288 79 LRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNV 155 (207)
T ss_pred hHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHH
Confidence 899999999999999999999999999999876544322 58889977666554433222221111 44455677899
Q ss_pred HHHHHHHhcChhHHHHHhcCc-eeEEEEEEEccCCeEEEEeccCCCC
Q 028412 159 NVSLGNLLTYPFVRESVVKNT-LALKGAHYDFVNGKFELWDLDFNIL 204 (209)
Q Consensus 159 ~~~v~~L~~~p~i~~~v~~g~-l~v~G~~yDi~tG~v~~~~~~~~~~ 204 (209)
++|+++|+++|.|+.++..++ |.||||+||++||+++.++......
T Consensus 156 ~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~ 202 (207)
T COG0288 156 REQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDF 202 (207)
T ss_pred HHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEecccccc
Confidence 999999999999999998877 9999999999999998887765443
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.5e-52 Score=352.50 Aligned_cols=180 Identities=21% Similarity=0.342 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHh---hCchhHH---hhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412 6 YEDAIAGLTKLLR---KNPDLYG---ALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79 (209)
Q Consensus 6 ~~~~l~~~~~~~~---~~~~~~~---~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~ 79 (209)
++.++++|++|.+ .+++++. ++.+||+|+++|||||||||+||.+||++|||+||+||+||+|++. +
T Consensus 57 l~~L~~GN~rF~~~~~~~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~~-------~ 129 (245)
T PRK15219 57 IESLKQGNKRFRSGKPAQHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISNDD-------L 129 (245)
T ss_pred HHHHHHHHHHHHhcCcCCchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCcc-------h
Confidence 4567777888877 2444443 3578999999999999999999999999999999999999999752 6
Q ss_pred hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhc-CCCChHHHhhHHHHHHH
Q 028412 80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKEC-NDLSFEEQCKNCEKEAV 158 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~nV 158 (209)
++|||||+.+|+|++|||||||+||||+|+++... .+++..|++.+.|+........ ...+..+..+.++++||
T Consensus 130 ~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~~NV 204 (245)
T PRK15219 130 LGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAVARKNV 204 (245)
T ss_pred hhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999987432 3579999999998886542211 11133455567788999
Q ss_pred HHHHHHHhc-ChhHHHHHhcCceeEEEEEEEccCCeEEEE
Q 028412 159 NVSLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELW 197 (209)
Q Consensus 159 ~~~v~~L~~-~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~ 197 (209)
+.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 205 ~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 205 ELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 999999985 899999999999999999999999999987
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.1e-48 Score=305.16 Aligned_cols=144 Identities=32% Similarity=0.488 Sum_probs=130.1
Q ss_pred chHHHHHHHHHHHHhhC-------chhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccc
Q 028412 4 DAYEDAIAGLTKLLRKN-------PDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKY 76 (209)
Q Consensus 4 ~~~~~~l~~~~~~~~~~-------~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~ 76 (209)
..+++++++|++|.+.. +++|..+.++|+|+++||||||||++|+.+||.+|||+||+||+||++++
T Consensus 3 ~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~------ 76 (154)
T cd03378 3 EALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD------ 76 (154)
T ss_pred HHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh------
Confidence 35788999999998732 34578889999999999999999999999999999999999999999986
Q ss_pred cchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHH
Q 028412 77 SGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKE 156 (209)
Q Consensus 77 ~~~~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 156 (209)
++++|||||+.+||+++|||||||+||+++++ +.++
T Consensus 77 -~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~~~ 112 (154)
T cd03378 77 -DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AVRA 112 (154)
T ss_pred -hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HHHH
Confidence 26799999999999999999999999999763 2357
Q ss_pred HHHHHHHHHhcChhHHH-HHhcCceeEEEEEEEccCCeEEEE
Q 028412 157 AVNVSLGNLLTYPFVRE-SVVKNTLALKGAHYDFVNGKFELW 197 (209)
Q Consensus 157 nV~~~v~~L~~~p~i~~-~v~~g~l~v~G~~yDi~tG~v~~~ 197 (209)
||+.|+++|+++|+|++ ++++|+++||||+||++||+|+++
T Consensus 113 nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 113 NVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 99999999999999988 999999999999999999999873
No 12
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=4.7e-47 Score=299.31 Aligned_cols=152 Identities=36% Similarity=0.613 Sum_probs=121.2
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCC
Q 028412 35 FLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD 114 (209)
Q Consensus 35 ~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~ 114 (209)
++||||||||++|+.+|+.+|||+||+||+||++++.+. ++++|||||+.+|++++|||||||+|||++++++...
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~~----~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPDD----SALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-H----HHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCcccc----chhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 689999999999999999999999999999999987653 4789999999999999999999999999998765321
Q ss_pred CCCCCchhHHHHHHhhhhhhHHHHhhc-CCCChHHHhhHHHHHHHHHHHHHHhcChhHHHHHhcCceeEEEEEEEccCCe
Q 028412 115 NGTTASDFIEEWVKICSSAKSKVKKEC-NDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 193 (209)
Q Consensus 115 ~~~~~~~~i~~~l~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~ 193 (209)
.++.+++|++...|+......+. ......+.....+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 24589999998888776532222 2211122223347889999999999999999999999999999999999999
Q ss_pred E
Q 028412 194 F 194 (209)
Q Consensus 194 v 194 (209)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.1e-45 Score=277.03 Aligned_cols=119 Identities=44% Similarity=0.746 Sum_probs=111.0
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 028412 31 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 110 (209)
Q Consensus 31 q~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~a~~ 110 (209)
|+|+++||||||||++|+.+||.+|||+||+||+||++++.+. ++++|||||+..||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~----~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDL----DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcc----cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 7999999999999999999999999999999999999987653 4789999999999999999999999999874
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHHHhcCceeEEEEEEEcc
Q 028412 111 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 190 (209)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~ 190 (209)
+.++||++|+++|+++|+++++++.+++.||||+||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 23479999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 028412 191 NGKFELW 197 (209)
Q Consensus 191 tG~v~~~ 197 (209)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999864
No 14
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5e-42 Score=268.10 Aligned_cols=141 Identities=23% Similarity=0.311 Sum_probs=111.7
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 028412 31 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 110 (209)
Q Consensus 31 q~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~a~~ 110 (209)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++||+||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999986 267999999999999999999999999999865
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHHHhcCceeEEEEEEEcc
Q 028412 111 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 190 (209)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~ 190 (209)
+ .+..|+.......... .. ............++||+.|+++|+++|++++ +++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYG--GI-DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhc--cc-CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECC
Confidence 3 2555665322110000 00 0111111123457899999999999999997 899999999999
Q ss_pred CCeEEE
Q 028412 191 NGKFEL 196 (209)
Q Consensus 191 tG~v~~ 196 (209)
||+++.
T Consensus 136 tG~v~~ 141 (142)
T cd03379 136 TGKLTE 141 (142)
T ss_pred CCEEEe
Confidence 999975
No 15
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=282.58 Aligned_cols=197 Identities=54% Similarity=0.868 Sum_probs=177.3
Q ss_pred chHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412 4 DAYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79 (209)
Q Consensus 4 ~~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~ 79 (209)
++.+++.+++-.|.+ .+|.+|..++++|+|+.+||+|+|||+.|+.|++.+|||.|++||++|+++|.|.+....+
T Consensus 61 ~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~ 140 (276)
T KOG1578|consen 61 DTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNV 140 (276)
T ss_pred chHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccc
Confidence 466777777777755 6889999999999999999999999999999999999999999999999998877666678
Q ss_pred hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHH
Q 028412 80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 159 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~ 159 (209)
.|+|||+|.+|+|++|+||||++||++++++.....++ ...++.+|.....++....++++...++.+|+..++.+.+.
T Consensus 141 ~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~ 219 (276)
T KOG1578|consen 141 GAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFL 219 (276)
T ss_pred cchHHHHHHHhccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988765554 56688889887777777777777778899999999999999
Q ss_pred HHHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccC
Q 028412 160 VSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDF 201 (209)
Q Consensus 160 ~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~ 201 (209)
.++.+|.+||++++++..|.+.+||++||+..|..++|.++.
T Consensus 220 ~s~~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg~~~~~~lde 261 (276)
T KOG1578|consen 220 VSLARLLSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWELDE 261 (276)
T ss_pred HHHHHHhcChHHHHHHhhcceeeeeeeEEeccCceeEEEecc
Confidence 999999999999999999999999999999999999999994
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=97.92 E-value=3.5e-07 Score=77.54 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=104.9
Q ss_pred HhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEEeecCCCCCCCccc------ccchhHH
Q 028412 25 GALAKGQSPKFLVFACSDSRVCPSHI----------------LNFQPGEAFMVRNIANMVPPYDQKK------YSGAGAA 82 (209)
Q Consensus 25 ~~l~~gq~P~~~vitC~DSRv~p~~i----------------~~~~~GdlfviRNaGn~v~~~d~~~------~~~~~as 82 (209)
+++..-++|.+..++|+|||+-|... +....||.|+.||.||.++...... .... .+
T Consensus 20 ~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~-l~ 98 (276)
T KOG1578|consen 20 EEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEP-LA 98 (276)
T ss_pred HHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcc-eE
Confidence 56666778999999999999999877 6678999999999999998532110 1112 35
Q ss_pred HHHHHHhcCcceEEEeccCCCCccccccCCCC--CCC---CCchhHHHHHHhhhh---------------hhHHHHhhcC
Q 028412 83 IEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD--NGT---TASDFIEEWVKICSS---------------AKSKVKKECN 142 (209)
Q Consensus 83 leyav~~L~v~~IvV~GHt~CGav~a~~~~~~--~~~---~~~~~i~~~l~~~~p---------------~~~~~~~~~~ 142 (209)
|+.|+..-...+|++|||++|=+++...+.-+ ... .....++-|+....- +......+-+
T Consensus 99 i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~ 178 (276)
T KOG1578|consen 99 LECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAP 178 (276)
T ss_pred EEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhcccccccCc
Confidence 67777788889999999999999986544221 111 112467888754210 0000000001
Q ss_pred CCChHH-H--------h---hHHHHHHHHHHHHHHhcChhHH--HHHhcCceeEEE--EEEEccCCeEE
Q 028412 143 DLSFEE-Q--------C---KNCEKEAVNVSLGNLLTYPFVR--ESVVKNTLALKG--AHYDFVNGKFE 195 (209)
Q Consensus 143 ~~~~~~-~--------~---~~~~~~nV~~~v~~L~~~p~i~--~~v~~g~l~v~G--~~yDi~tG~v~ 195 (209)
..+|.+ | . +.+...|..+|.+|..++.+.. ..+......+++ -+.+.-.|..+
T Consensus 179 ~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~G~~Y 247 (276)
T KOG1578|consen 179 SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVHGGYY 247 (276)
T ss_pred chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeeeeeeE
Confidence 111211 0 0 1233457788999888777666 455555555565 44555555543
No 17
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=70.97 E-value=22 Score=27.27 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHh--------hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccc
Q 028412 5 AYEDAIAGLTKLLR--------KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKY 76 (209)
Q Consensus 5 ~~~~~l~~~~~~~~--------~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~ 76 (209)
+..+...+++++.. -+|.+|+++.-.+=| ++|+.|.+..+..+.. ..+++- .+-.||+
T Consensus 37 ~~~~T~~~i~~L~~~~~~~~v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~--d~v~Gdv--------- 102 (130)
T TIGR02742 37 GFKATATRIQSLIKDGGKSGVQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDY--DVVYGNV--------- 102 (130)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCe--eEEEecc---------
Confidence 44555555555543 267888887766556 6777888765554433 344444 3444765
Q ss_pred cchhHHHHHHHHhcC
Q 028412 77 SGAGAAIEYAVLHLK 91 (209)
Q Consensus 77 ~~~~asleyav~~L~ 91 (209)
||+||++.+.
T Consensus 103 -----sl~~ALe~ia 112 (130)
T TIGR02742 103 -----SLKGALEKMA 112 (130)
T ss_pred -----cHHHHHHHHH
Confidence 6788877654
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=70.18 E-value=4 Score=29.42 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.6
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|+||+++..+|.|+.+-
T Consensus 29 ~lgl~G~V~N~~DGsVeiva 48 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVA 48 (92)
T ss_pred HCCCEEEEEECCCCeEEEEE
Confidence 57799999999999998764
No 19
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=69.02 E-value=13 Score=36.82 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=28.3
Q ss_pred HHhcChhHHHHHhcCce------eEEEEEEEccCCeEEEEeccC
Q 028412 164 NLLTYPFVRESVVKNTL------ALKGAHYDFVNGKFELWDLDF 201 (209)
Q Consensus 164 ~L~~~p~i~~~v~~g~l------~v~G~~yDi~tG~v~~~~~~~ 201 (209)
.|.+.|.||+.+++..| ...|+..|..|-+|++++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 44556667776665444 468999999999999998764
No 20
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=61.73 E-value=12 Score=26.13 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=21.9
Q ss_pred ceeEEEEEEEccC--CeEEEEeccCCCC
Q 028412 179 TLALKGAHYDFVN--GKFELWDLDFNIL 204 (209)
Q Consensus 179 ~l~v~G~~yDi~t--G~v~~~~~~~~~~ 204 (209)
++.|+||++.+.. |++.|+++....|
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g 28 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG 28 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC
Confidence 3689999999997 6899999877766
No 21
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=54.88 E-value=4.2 Score=28.62 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 028412 181 ALKGAHYDFVNGKFE 195 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~ 195 (209)
.-|||.||+.||++.
T Consensus 65 p~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 65 PCHGWRFDLDTGECV 79 (97)
T ss_dssp TTTTEEEETTTSBEE
T ss_pred CCcCCEEeCCCceEe
Confidence 369999999999863
No 22
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=54.85 E-value=6.1 Score=24.96 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.2
Q ss_pred EEEEEEccCCeEE
Q 028412 183 KGAHYDFVNGKFE 195 (209)
Q Consensus 183 ~G~~yDi~tG~v~ 195 (209)
-|+.||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 5889999999974
No 23
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=48.89 E-value=6.4 Score=32.20 Aligned_cols=38 Identities=26% Similarity=0.590 Sum_probs=25.0
Q ss_pred HHH-hcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCC
Q 028412 163 GNL-LTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPS 206 (209)
Q Consensus 163 ~~L-~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~~~~ 206 (209)
+.| ++||.++++++. |-.+|+.||+++.++..-++=|.
T Consensus 138 ~~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~VP~ 176 (202)
T PF01707_consen 138 RELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNLVPV 176 (202)
T ss_dssp HHHHCC-CCHCCHCCC------T-EEETTTTCEES--TTS--S-T
T ss_pred HHHHHhCchhhhcccc------CeeEeecCCceecCCCccccccc
Confidence 345 689999998765 56899999999988887766554
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=48.46 E-value=6.8 Score=27.63 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=13.0
Q ss_pred eEEEEEEEccCCeEE
Q 028412 181 ALKGAHYDFVNGKFE 195 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~ 195 (209)
..|||.||++||++.
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 479999999999863
No 25
>PRK14432 acylphosphatase; Provisional
Probab=47.65 E-value=24 Score=25.23 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.2
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.++.+|.|+.+.
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57799999999999988754
No 26
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=47.34 E-value=70 Score=24.18 Aligned_cols=77 Identities=17% Similarity=0.089 Sum_probs=56.8
Q ss_pred hhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCCc
Q 028412 26 ALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGG 105 (209)
Q Consensus 26 ~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CGa 105 (209)
-+..|..|++.++-+==-|-+...... .....+.++|..+.++. +++.+|..|+..-+--.|+|-|-.|==+
T Consensus 5 ll~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~ 76 (121)
T PF04019_consen 5 LLEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAV 76 (121)
T ss_pred HHhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHH
Confidence 346788999999998888887655443 55678899999999975 2567788887665566777777777665
Q ss_pred ccccc
Q 028412 106 IKGLM 110 (209)
Q Consensus 106 v~a~~ 110 (209)
+-+.+
T Consensus 77 lPail 81 (121)
T PF04019_consen 77 LPAIL 81 (121)
T ss_pred HHHHH
Confidence 54433
No 27
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=46.87 E-value=6.4 Score=27.79 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCeEE
Q 028412 181 ALKGAHYDFVNGKFE 195 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~ 195 (209)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 479999999999853
No 28
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=46.23 E-value=13 Score=29.34 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.8
Q ss_pred CcceEEEeccCCCCc
Q 028412 91 KVENIVVIGHSCCGG 105 (209)
Q Consensus 91 ~v~~IvV~GHt~CGa 105 (209)
.+..|.|+||.+||=
T Consensus 2 ~~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGK 16 (188)
T ss_dssp TEEEEEEEESTTSSH
T ss_pred CEEEEEEECCCCCCc
Confidence 357899999999994
No 29
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=44.23 E-value=11 Score=28.64 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.3
Q ss_pred eEEEEEEEccCCeEEEE
Q 028412 181 ALKGAHYDFVNGKFELW 197 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~~~ 197 (209)
.-|||.||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 47999999999997643
No 30
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=44.03 E-value=10 Score=31.69 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=32.6
Q ss_pred HHHHHHhc-ChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCC
Q 028412 160 VSLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNI 203 (209)
Q Consensus 160 ~~v~~L~~-~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~ 203 (209)
+|-.+|+. -|.-++.|...+ .|+=++||.+||..+++--+++|
T Consensus 149 eqksr~~am~PmTkEEyearQ-SvIRrVvDpETGRtRLIkGdGEi 192 (225)
T PF10500_consen 149 EQKSRIQAMAPMTKEEYEARQ-SVIRRVVDPETGRTRLIKGDGEI 192 (225)
T ss_pred chhhhhhhcCCCCHHHHHHHH-hhheeeecCCCCceeeecccchH
Confidence 34455554 488888886543 57789999999999999888876
No 31
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=43.69 E-value=27 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.7
Q ss_pred HHHHHhcChhHHHHHhcCceeEEEE
Q 028412 161 SLGNLLTYPFVRESVVKNTLALKGA 185 (209)
Q Consensus 161 ~v~~L~~~p~i~~~v~~g~l~v~G~ 185 (209)
-|..|..+|.+-+.+++|+..+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3668889999999999999998885
No 32
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=43.51 E-value=26 Score=30.06 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHH-----HHhhCchhHHhh-hcCCCCcEEEEeecCCCCC
Q 028412 3 NDAYEDAIAGLTK-----LLRKNPDLYGAL-AKGQSPKFLVFACSDSRVC 46 (209)
Q Consensus 3 ~~~~~~~l~~~~~-----~~~~~~~~~~~l-~~gq~P~~~vitC~DSRv~ 46 (209)
+++.|++.+.+.+ ++.++| |... .....|++++||++|++=-
T Consensus 112 ~l~~e~v~~~Ll~sGlW~~irqRP--y~~va~p~~~P~aIFVsa~dt~PL 159 (257)
T PF05896_consen 112 SLSREEVKEQLLESGLWTAIRQRP--YSKVANPDSTPKAIFVSAMDTNPL 159 (257)
T ss_pred hCCHHHHHHHHHHcCCchhhccCC--CCCCCCCCCCCceEEEEcccCCCC
Confidence 4555666665554 222333 3333 3467899999999999854
No 33
>PRK14423 acylphosphatase; Provisional
Probab=43.42 E-value=38 Score=24.11 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=17.2
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.++.+|.|+.+-
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~ 49 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVF 49 (92)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 57899999999999987653
No 34
>PRK14445 acylphosphatase; Provisional
Probab=42.86 E-value=39 Score=23.95 Aligned_cols=20 Identities=25% Similarity=0.337 Sum_probs=16.9
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+..-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEA 48 (91)
T ss_pred hCCCEEEEEECCCCeEEEEE
Confidence 57799999999999887643
No 35
>PRK14440 acylphosphatase; Provisional
Probab=42.44 E-value=35 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~ 47 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVVA 47 (90)
T ss_pred HcCCEEEEEECCCCCEEEEE
Confidence 57799999999999887654
No 36
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=42.40 E-value=10 Score=27.25 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=12.6
Q ss_pred eEEEEEEEccCCeE
Q 028412 181 ALKGAHYDFVNGKF 194 (209)
Q Consensus 181 ~v~G~~yDi~tG~v 194 (209)
..|||.||+.||+.
T Consensus 63 P~Hg~~Fdl~tG~~ 76 (101)
T TIGR02377 63 PKHAGCFDYRTGEA 76 (101)
T ss_pred CccCCEEECCCCcc
Confidence 47999999999986
No 37
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=41.88 E-value=8.9 Score=28.48 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=13.7
Q ss_pred eEEEEEEEccCCeEEE
Q 028412 181 ALKGAHYDFVNGKFEL 196 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~~ 196 (209)
..|||-||+.||+...
T Consensus 71 P~Hg~~FDLrTG~~~~ 86 (107)
T cd03473 71 TKHNWKLDVSTMKYVN 86 (107)
T ss_pred CCCCCEEEcCCCCCcc
Confidence 4799999999999643
No 38
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=41.17 E-value=10 Score=27.30 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 028412 181 ALKGAHYDFVNGKFE 195 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~ 195 (209)
..|||.||++||+..
T Consensus 68 p~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 68 PLHKRNFRLEDGRCL 82 (105)
T ss_pred CcCCCEEEcCCcccc
Confidence 479999999999853
No 39
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=40.63 E-value=9.7 Score=27.39 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=12.5
Q ss_pred eEEEEEEEccCCeE
Q 028412 181 ALKGAHYDFVNGKF 194 (209)
Q Consensus 181 ~v~G~~yDi~tG~v 194 (209)
..|||.||++||+.
T Consensus 67 p~Hg~~Fdl~tG~~ 80 (103)
T cd03529 67 PLYKQHFSLKTGRC 80 (103)
T ss_pred CCCCCEEEcCCCCc
Confidence 47999999999995
No 40
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=40.12 E-value=20 Score=28.44 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=12.5
Q ss_pred cceEEEeccCCCCc
Q 028412 92 VENIVVIGHSCCGG 105 (209)
Q Consensus 92 v~~IvV~GHt~CGa 105 (209)
++.|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 67999999999993
No 41
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=39.17 E-value=12 Score=27.41 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=12.6
Q ss_pred eEEEEEEEccCCeE
Q 028412 181 ALKGAHYDFVNGKF 194 (209)
Q Consensus 181 ~v~G~~yDi~tG~v 194 (209)
..|||.||+.||+.
T Consensus 67 p~H~a~Fdl~tG~~ 80 (106)
T COG2146 67 PLHGARFDLRTGEC 80 (106)
T ss_pred CccCCEEEcCCCce
Confidence 47999999999995
No 42
>PRK11440 putative hydrolase; Provisional
Probab=39.07 E-value=64 Score=25.58 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=29.9
Q ss_pred CCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCCcc
Q 028412 52 NFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 106 (209)
Q Consensus 52 ~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav 106 (209)
...+||.++.++--+-... ..|+.-+...|+++|+|+|=+-..-|
T Consensus 91 ~~~~~d~vi~K~~~saF~~----------T~L~~~L~~~gi~~lii~Gv~T~~CV 135 (188)
T PRK11440 91 GKTDSDIEVTKRQWGAFYG----------TDLELQLRRRGIDTIVLCGISTNIGV 135 (188)
T ss_pred CCCCCCEEEecCCcCCCCC----------CCHHHHHHHCCCCEEEEeeechhHHH
Confidence 4567888777765444322 13566678899999999996554443
No 43
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=38.82 E-value=11 Score=27.66 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=12.5
Q ss_pred eEEEEEEEccCCeE
Q 028412 181 ALKGAHYDFVNGKF 194 (209)
Q Consensus 181 ~v~G~~yDi~tG~v 194 (209)
..|||.||+.||+.
T Consensus 71 P~H~~~Fdl~TG~~ 84 (108)
T PRK09511 71 PLKKQRFRLSDGLC 84 (108)
T ss_pred CCCCCEEECCCccc
Confidence 47999999999985
No 44
>PRK14434 acylphosphatase; Provisional
Probab=38.53 E-value=50 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=16.9
Q ss_pred cee-EEEEEEEccCCeEEEEe
Q 028412 179 TLA-LKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~-v~G~~yDi~tG~v~~~~ 198 (209)
++. |.||+.+..+|.|+..-
T Consensus 27 ~lg~l~G~V~N~~dGsVei~~ 47 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEILA 47 (92)
T ss_pred HcCCcEEEEEECCCCCEEEEE
Confidence 577 99999999999887654
No 45
>PRK14430 acylphosphatase; Provisional
Probab=38.09 E-value=26 Score=25.02 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.8
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~lgl~G~VrN~~dGsVei~~ 48 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVMA 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 56799999999999987643
No 46
>PRK14429 acylphosphatase; Provisional
Probab=37.93 E-value=48 Score=23.41 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 028412 179 TLALKGAHYDFVNGKFELW 197 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~ 197 (209)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 5679999999999988764
No 47
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=37.55 E-value=12 Score=27.01 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=12.5
Q ss_pred eEEEEEEEccCCeE
Q 028412 181 ALKGAHYDFVNGKF 194 (209)
Q Consensus 181 ~v~G~~yDi~tG~v 194 (209)
..|||.||+.||+.
T Consensus 63 p~Hg~~Fd~~tG~~ 76 (106)
T PRK09965 63 PLHAASFCLRTGKA 76 (106)
T ss_pred CCCCCEEEcCCCCe
Confidence 47999999999995
No 48
>PRK14451 acylphosphatase; Provisional
Probab=36.90 E-value=46 Score=23.55 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+..-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~ 47 (89)
T PRK14451 28 QLMISGWARNLADGRVEVFA 47 (89)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57799999999999987654
No 49
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=36.85 E-value=52 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=14.8
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+.
T Consensus 29 ~~gl~G~V~N~~dg~V~i~~ 48 (91)
T PF00708_consen 29 KLGLTGWVRNLPDGSVEIEA 48 (91)
T ss_dssp HTT-EEEEEE-TTSEEEEEE
T ss_pred HhCCceEEEECCCCEEEEEE
Confidence 46699999999999987653
No 50
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=36.46 E-value=14 Score=26.62 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=12.4
Q ss_pred eEEEEEEEccCCeE
Q 028412 181 ALKGAHYDFVNGKF 194 (209)
Q Consensus 181 ~v~G~~yDi~tG~v 194 (209)
..|||.||++||..
T Consensus 62 P~Hg~~Fdl~~G~~ 75 (108)
T cd03474 62 RAHLWQFDADTGEG 75 (108)
T ss_pred CCcCCEEECCCccc
Confidence 47999999999984
No 51
>PRK14449 acylphosphatase; Provisional
Probab=36.32 E-value=55 Score=23.14 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 28 ~lgl~G~V~N~~dG~Vei~~ 47 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVVA 47 (90)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 57799999999999987653
No 52
>PRK14448 acylphosphatase; Provisional
Probab=36.17 E-value=47 Score=23.54 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.8
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVVA 46 (90)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 56799999999999887643
No 53
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=36.00 E-value=11 Score=26.62 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=12.4
Q ss_pred eEEEEEEEccCCeE
Q 028412 181 ALKGAHYDFVNGKF 194 (209)
Q Consensus 181 ~v~G~~yDi~tG~v 194 (209)
..|||.||+.||.+
T Consensus 62 p~Hg~~Fdl~~G~~ 75 (98)
T cd03530 62 PLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCEEECCCCCC
Confidence 47999999999985
No 54
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=35.96 E-value=70 Score=20.99 Aligned_cols=24 Identities=13% Similarity=-0.096 Sum_probs=18.7
Q ss_pred CceeEEEEEEEccCCeEEEEeccC
Q 028412 178 NTLALKGAHYDFVNGKFELWDLDF 201 (209)
Q Consensus 178 g~l~v~G~~yDi~tG~v~~~~~~~ 201 (209)
....+++|+-|+.|++|-....+.
T Consensus 21 ~~~~~~~WyvD~~tn~VVV~a~~~ 44 (62)
T PF02983_consen 21 APVAVTSWYVDPRTNKVVVTADST 44 (62)
T ss_dssp GGGCEEEEEEECCCTEEEEEEECT
T ss_pred CCCCcceEEEeCCCCeEEEEECCC
Confidence 356799999999999986654443
No 55
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=35.50 E-value=66 Score=21.81 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHhhCchhHHhhh-cCCCCcEEEEe
Q 028412 3 NDAYEDAIAGLTKLLRKNPDLYGALA-KGQSPKFLVFA 39 (209)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~l~-~gq~P~~~vit 39 (209)
+.+++.++..+++|+..++++.++|. .|=+|..-.+|
T Consensus 18 ~~~~~sA~r~L~rwI~~~~~L~~~L~~~Gy~~~~r~~T 55 (69)
T PF14053_consen 18 DLTPSSAVRKLRRWIRRNPELLEELEATGYHPRQRSFT 55 (69)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHcCCCCCCEecC
Confidence 35778899999999999999999884 56566554443
No 56
>PRK14422 acylphosphatase; Provisional
Probab=35.33 E-value=51 Score=23.51 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.9
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+...
T Consensus 31 ~~gl~G~V~N~~dG~Vei~~ 50 (93)
T PRK14422 31 ELGLTGYAANLADGRVQVVA 50 (93)
T ss_pred HcCCEEEEEECCCCCEEEEE
Confidence 57799999999999887643
No 57
>PRK14436 acylphosphatase; Provisional
Probab=35.22 E-value=57 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.9
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~l~l~G~V~N~~dG~Vei~~ 48 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAVL 48 (91)
T ss_pred HcCCEEEEEECCCCcEEEEE
Confidence 57799999999999887654
No 58
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=35.17 E-value=3.4e+02 Score=24.48 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCcceEEEeccCC
Q 028412 81 AAIEYAVLHLKVENIVVIGHSC 102 (209)
Q Consensus 81 asleyav~~L~v~~IvV~GHt~ 102 (209)
-+|++|.. .+++.|+++||-.
T Consensus 236 ~~L~~A~~-~g~~~i~l~G~~G 256 (361)
T PRK00075 236 PMLKAAAR-LGVKKVLLVGHPG 256 (361)
T ss_pred HHHHHHHH-cCCCEEEEEeeHH
Confidence 36887765 7999999999953
No 59
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.13 E-value=22 Score=30.33 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=11.9
Q ss_pred cceEEEeccCCCCc
Q 028412 92 VENIVVIGHSCCGG 105 (209)
Q Consensus 92 v~~IvV~GHt~CGa 105 (209)
-+-|.|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 36788999999994
No 60
>PRK14426 acylphosphatase; Provisional
Probab=35.02 E-value=55 Score=23.27 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=16.8
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVVA 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 57799999999999887643
No 61
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=34.21 E-value=1.6e+02 Score=24.69 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=40.9
Q ss_pred chhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCCCCc-eEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceE
Q 028412 21 PDLYGALAKGQSPKFLVFACSDSRV----CPSHILNFQPGE-AFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENI 95 (209)
Q Consensus 21 ~~~~~~l~~gq~P~~~vitC~DSRv----~p~~i~~~~~Gd-lfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~I 95 (209)
++.++++..+++|.=++.-|...+. +.+.++...... ++++=++ -.| .-+++|-=....+|++.|
T Consensus 55 ~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v---~dp-------~NlGai~Rta~a~G~~~v 124 (244)
T PRK11181 55 RQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGV---TDP-------HNLGACLRSADAAGVHAV 124 (244)
T ss_pred HHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCC---CCc-------chHHHHHHHHHHcCCCEE
Confidence 4556777777777655555554332 233333322222 3333211 111 123567778888999999
Q ss_pred EEeccCCCC
Q 028412 96 VVIGHSCCG 104 (209)
Q Consensus 96 vV~GHt~CG 104 (209)
++.+++.+.
T Consensus 125 i~~~~~~~~ 133 (244)
T PRK11181 125 IVPKDRSAQ 133 (244)
T ss_pred EECCCCCCC
Confidence 998887544
No 62
>PRK14444 acylphosphatase; Provisional
Probab=33.44 E-value=59 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.7
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+..-
T Consensus 29 ~lgl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14444 29 EAGVKGWVRNLSDGRVEAVF 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 57799999999999887543
No 63
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=33.41 E-value=68 Score=21.74 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=19.2
Q ss_pred eeEEEEEEEcc-CCeEEEEeccCCCC
Q 028412 180 LALKGAHYDFV-NGKFELWDLDFNIL 204 (209)
Q Consensus 180 l~v~G~~yDi~-tG~v~~~~~~~~~~ 204 (209)
+.|+||++.+. .|++.|+++..+.+
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~ 27 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSC 27 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCC
Confidence 67999999887 57788888865444
No 64
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=33.00 E-value=3.6e+02 Score=24.17 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCcceEEEeccCC
Q 028412 81 AAIEYAVLHLKVENIVVIGHSC 102 (209)
Q Consensus 81 asleyav~~L~v~~IvV~GHt~ 102 (209)
.+|++|.. .+++.|+++||-.
T Consensus 223 ~~L~~a~~-~g~~~i~l~G~~G 243 (347)
T TIGR00312 223 SMLVAAAA-VGVEEILLLGHAG 243 (347)
T ss_pred HHHHHHHH-cCCCEEEEEeEhH
Confidence 46887776 6999999999964
No 65
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=32.28 E-value=27 Score=26.81 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.9
Q ss_pred ceEEEeccCCCC
Q 028412 93 ENIVVIGHSCCG 104 (209)
Q Consensus 93 ~~IvV~GHt~CG 104 (209)
+.|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 468999999999
No 66
>PRK14441 acylphosphatase; Provisional
Probab=31.98 E-value=49 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~ 49 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEA 49 (93)
T ss_pred hcCcEEEEEECCCCEEEEEE
Confidence 67899999999999887643
No 67
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=31.96 E-value=16 Score=25.69 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCeEE
Q 028412 181 ALKGAHYDFVNGKFE 195 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~ 195 (209)
..|||.||++||+..
T Consensus 62 p~H~~~f~~~~G~~~ 76 (98)
T cd03467 62 PCHGSRFDLRTGEVV 76 (98)
T ss_pred CCCCCEEeCCCccCc
Confidence 479999999999953
No 68
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=31.37 E-value=33 Score=27.17 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=13.1
Q ss_pred CcceEEEeccCCCCc
Q 028412 91 KVENIVVIGHSCCGG 105 (209)
Q Consensus 91 ~v~~IvV~GHt~CGa 105 (209)
+...|+|+|+++||=
T Consensus 40 ~~~~I~iiG~~g~GK 54 (204)
T cd01878 40 GIPTVALVGYTNAGK 54 (204)
T ss_pred CCCeEEEECCCCCCH
Confidence 468999999999994
No 69
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.95 E-value=65 Score=24.35 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=23.2
Q ss_pred CCCCCceE-EEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEec
Q 028412 52 NFQPGEAF-MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIG 99 (209)
Q Consensus 52 ~~~~Gdlf-viRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~G 99 (209)
+..|||++ ++-+-||-- .++.++++| +..|.+.|.|.|
T Consensus 100 ~~~~gDvli~iS~SG~s~---------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSP---------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp T--TT-EEEEEESSS-SH---------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred CCCCCCEEEEECCCCCCH---------HHHHHHHHH-HHCCCEEEEEeC
Confidence 47899976 666777752 256777777 677888888765
No 70
>PRK14433 acylphosphatase; Provisional
Probab=30.58 E-value=70 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.++.+|.|+.+.
T Consensus 26 ~~~l~G~V~N~~dG~Vei~~ 45 (87)
T PRK14433 26 ELGLSGYAENLSDGRVEVVA 45 (87)
T ss_pred HcCCEEEEEECCCCCEEEEE
Confidence 57799999999999887654
No 71
>PRK14437 acylphosphatase; Provisional
Probab=30.48 E-value=64 Score=23.87 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+...|.|+.+.
T Consensus 48 ~lgL~G~V~N~~dG~Vei~~ 67 (109)
T PRK14437 48 ELQLTGWVKNLSHGDVELVA 67 (109)
T ss_pred HhCCeEEEEECCCCCEEEEE
Confidence 56799999999999987654
No 72
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=30.37 E-value=33 Score=25.80 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=11.3
Q ss_pred ceEEEeccCCCCc
Q 028412 93 ENIVVIGHSCCGG 105 (209)
Q Consensus 93 ~~IvV~GHt~CGa 105 (209)
+.|+|+|+++||=
T Consensus 1 ~~i~iiG~~~~GK 13 (168)
T cd01887 1 PVVTVMGHVDHGK 13 (168)
T ss_pred CEEEEEecCCCCH
Confidence 4699999999993
No 73
>PRK14421 acylphosphatase; Provisional
Probab=30.29 E-value=73 Score=23.12 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=16.9
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+-+..+|.|+...
T Consensus 29 ~lgL~G~V~N~~dG~Vei~~ 48 (99)
T PRK14421 29 ALGLEGWVRNRRDGSVEALF 48 (99)
T ss_pred HhCCEEEEEECCCCEEEEEE
Confidence 56799999999999987654
No 74
>PRK14427 acylphosphatase; Provisional
Probab=29.93 E-value=83 Score=22.47 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+-+..+|.|+.+-
T Consensus 31 ~lgl~G~V~N~~dGsVei~~ 50 (94)
T PRK14427 31 ELGLTGTVRNLDDGSVALVA 50 (94)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 57899999999999887643
No 75
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.47 E-value=53 Score=23.96 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.4
Q ss_pred HHHHHHhcChhHHHHHhcCceeEE--EEEEEcc
Q 028412 160 VSLGNLLTYPFVRESVVKNTLALK--GAHYDFV 190 (209)
Q Consensus 160 ~~v~~L~~~p~i~~~v~~g~l~v~--G~~yDi~ 190 (209)
..+++|..+|-+++ .|.|- ||+|-.+
T Consensus 49 ~tiknlL~hPrl~k-----~L~iengG~VyYP~ 76 (107)
T COG4707 49 WTIKNLLLHPRLKK-----MLSIENGGWVYYPE 76 (107)
T ss_pred hHHHHHhcCchhhh-----heeeecCcEEEccc
Confidence 45788999999998 45566 9998765
No 76
>PRK14420 acylphosphatase; Provisional
Probab=28.80 E-value=50 Score=23.31 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=16.3
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 028412 179 TLALKGAHYDFVNGKFELW 197 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~ 197 (209)
++.|.||+.+..+|.|+..
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (91)
T PRK14420 27 KRKLTGWVKNRDDGTVEIE 45 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 4679999999999988754
No 77
>PRK14428 acylphosphatase; Provisional
Probab=28.75 E-value=86 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+-+..+|.|+...
T Consensus 33 ~lgL~G~V~N~~dGsVei~~ 52 (97)
T PRK14428 33 RLGVQGWVRNCRDGSVELEA 52 (97)
T ss_pred HcCCEEEEEECCCCEEEEEE
Confidence 57799999999999987654
No 78
>PRK14438 acylphosphatase; Provisional
Probab=28.63 E-value=88 Score=22.14 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 028412 179 TLALKGAHYDFVNGKFELW 197 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~ 197 (209)
++.|.||+-+..+|.|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (91)
T PRK14438 28 RLNVSGWVKNLPNGSVQGC 46 (91)
T ss_pred HcCCEEEEEECCCCEEEEE
Confidence 5779999999999998754
No 79
>PRK14425 acylphosphatase; Provisional
Probab=28.37 E-value=52 Score=23.53 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=16.9
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+...|.|+.+-
T Consensus 31 ~~gl~G~V~N~~dGsVei~~ 50 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTALI 50 (94)
T ss_pred HhCCEEEEEECCCCeEEEEE
Confidence 46699999999999988653
No 80
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=28.24 E-value=76 Score=21.67 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=18.5
Q ss_pred ceeEEEEEEEcc-CCeEEEEeccCCCC
Q 028412 179 TLALKGAHYDFV-NGKFELWDLDFNIL 204 (209)
Q Consensus 179 ~l~v~G~~yDi~-tG~v~~~~~~~~~~ 204 (209)
++.|+||++... .|++.|+.+....|
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~ 27 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTG 27 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCe
Confidence 367899999876 46777777765544
No 81
>PRK14446 acylphosphatase; Provisional
Probab=28.13 E-value=63 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.7
Q ss_pred CceeEEEEEEEccCCeEEEEe
Q 028412 178 NTLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 178 g~l~v~G~~yDi~tG~v~~~~ 198 (209)
.++.|.||+.+..+|.|+..-
T Consensus 26 ~~lgl~G~V~N~~dGsVei~~ 46 (88)
T PRK14446 26 VALGLVGHARNQADGSVEVVA 46 (88)
T ss_pred eeCCeEEEEEECCCCCEEEEE
Confidence 368899999999999887654
No 82
>PRK14452 acylphosphatase; Provisional
Probab=27.99 E-value=76 Score=23.39 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+.+-
T Consensus 45 ~lgL~G~V~N~~dGsVeI~~ 64 (107)
T PRK14452 45 DLGLSGWVRNLSDGSVEVQA 64 (107)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57799999999999987653
No 83
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=27.74 E-value=59 Score=26.45 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred chhHHHHHHHHhcCcceEEEecc
Q 028412 78 GAGAAIEYAVLHLKVENIVVIGH 100 (209)
Q Consensus 78 ~~~asleyav~~L~v~~IvV~GH 100 (209)
+..+-||||.+.|++..|+||=|
T Consensus 120 ~lvalLEfAEekl~~d~Vfi~F~ 142 (191)
T KOG4387|consen 120 GLVALLEFAEEKLHVDKVFICFD 142 (191)
T ss_pred hHHHHHHHHHHhhccceEEEEEe
Confidence 46788999999999999999876
No 84
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=27.72 E-value=94 Score=23.84 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=31.4
Q ss_pred CCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCCcccc
Q 028412 54 QPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 108 (209)
Q Consensus 54 ~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~a 108 (209)
.|+|.++-|+.-|-... ..|+-.+...|++.++|+|-.-..-|.+
T Consensus 60 ~~~~~vi~K~~~saf~~----------t~L~~~L~~~gi~~lii~G~~T~~CV~~ 104 (157)
T cd01012 60 FPDAPVIEKTSFSCWED----------EAFRKALKATGRKQVVLAGLETHVCVLQ 104 (157)
T ss_pred CCCCCceecccccCcCC----------HHHHHHHHhcCCCEEEEEEeeccHHHHH
Confidence 57887777776554322 2466678889999999999876655543
No 85
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=27.63 E-value=36 Score=27.52 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.1
Q ss_pred ceEEEeccCCCCc
Q 028412 93 ENIVVIGHSCCGG 105 (209)
Q Consensus 93 ~~IvV~GHt~CGa 105 (209)
+.|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4689999999994
No 86
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=27.41 E-value=32 Score=25.32 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=13.0
Q ss_pred eEEEEEEEccCCeEEEE
Q 028412 181 ALKGAHYDFVNGKFELW 197 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~~~ 197 (209)
..|||-||+ ||+...+
T Consensus 63 P~Hg~~fd~-~G~~~~~ 78 (115)
T cd03531 63 PFHDWRWGG-DGRCKAI 78 (115)
T ss_pred CCCCCEECC-CCCEEEC
Confidence 479999999 9986554
No 87
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=27.29 E-value=48 Score=24.44 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHhcCcceEEEeccCCCCc
Q 028412 77 SGAGAAIEYAVLHLKVENIVVIGHSCCGG 105 (209)
Q Consensus 77 ~~~~asleyav~~L~v~~IvV~GHt~CGa 105 (209)
.+.++-||||=..|++.+|+||=+-+.-.
T Consensus 41 ~~lvaLLElAee~L~c~~vvic~~k~~~d 69 (108)
T PF02100_consen 41 ESLVALLELAEEKLGCSHVVICLDKNRPD 69 (108)
T ss_dssp HHHHHHHHHHHHHH----EEEEE---SS-
T ss_pred HHHHHHHHHhcCcCCCCEEEEEEECCchh
Confidence 35788999999999999999997755443
No 88
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=27.14 E-value=42 Score=28.57 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=12.4
Q ss_pred cceEEEeccCCCCc
Q 028412 92 VENIVVIGHSCCGG 105 (209)
Q Consensus 92 v~~IvV~GHt~CGa 105 (209)
.+.|.|+||.++|=
T Consensus 2 ~Rni~ivGh~~~GK 15 (267)
T cd04169 2 RRTFAIISHPDAGK 15 (267)
T ss_pred ccEEEEEcCCCCCH
Confidence 47899999999994
No 89
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=27.09 E-value=55 Score=25.44 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=23.2
Q ss_pred chhHHHHHHHHhcCcceEEEeccCCCCcc
Q 028412 78 GAGAAIEYAVLHLKVENIVVIGHSCCGGI 106 (209)
Q Consensus 78 ~~~asleyav~~L~v~~IvV~GHt~CGav 106 (209)
.+...+++-.+.++++.+.++|||- |+.
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~ 56 (230)
T PF00561_consen 29 DLAADLEALREALGIKKINLVGHSM-GGM 56 (230)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEETH-HHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECC-ChH
Confidence 3567888899999999999999976 553
No 90
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=26.81 E-value=93 Score=22.39 Aligned_cols=27 Identities=11% Similarity=-0.025 Sum_probs=20.9
Q ss_pred CceeEEEEEEEcc-CCeEEEEeccCCCC
Q 028412 178 NTLALKGAHYDFV-NGKFELWDLDFNIL 204 (209)
Q Consensus 178 g~l~v~G~~yDi~-tG~v~~~~~~~~~~ 204 (209)
.++.|+||+..+. .|++.|+.+....|
T Consensus 13 ~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g 40 (108)
T cd04316 13 EEVTVAGWVHEIRDLGGIKFVILRDREG 40 (108)
T ss_pred CEEEEEEEEEeeeccCCeEEEEEecCCe
Confidence 4699999999876 57788887766554
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=26.78 E-value=38 Score=25.49 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=10.5
Q ss_pred eEEEeccCCCCc
Q 028412 94 NIVVIGHSCCGG 105 (209)
Q Consensus 94 ~IvV~GHt~CGa 105 (209)
.|+|+||++||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 389999999994
No 92
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=26.44 E-value=1.1e+02 Score=25.84 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=26.0
Q ss_pred cChhHHHHHhcCceeEEEEEEEccCCeEEEEe
Q 028412 167 TYPFVRESVVKNTLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 167 ~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~ 198 (209)
...++-+...+|++.-||.+++++||++..+.
T Consensus 211 ~~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~ 242 (244)
T TIGR03736 211 AMNLLWKLFRKGRLEFHGVFVNLATGRTNPLP 242 (244)
T ss_pred HHHHHHHHHhcCceeeeEEEEECCCCcccccc
Confidence 34556777788999999999999999976553
No 93
>PRK14443 acylphosphatase; Provisional
Probab=26.40 E-value=63 Score=23.18 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=17.3
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+-++.+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (93)
T PRK14443 29 KYDISGTVKNLDDGSVEIHA 48 (93)
T ss_pred HcCCEEEEEECCCCEEEEEE
Confidence 57799999999999997754
No 94
>KOG4780 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=34 Score=31.48 Aligned_cols=33 Identities=30% Similarity=0.128 Sum_probs=30.4
Q ss_pred eecCCCCChhhhcCCCCCceEEEEeecCCCCCC
Q 028412 39 ACSDSRVCPSHILNFQPGEAFMVRNIANMVPPY 71 (209)
Q Consensus 39 tC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~ 71 (209)
+=.|||.+...+.+-+.||+--+||++|.+.|-
T Consensus 390 s~~~s~~~~w~~~~~~~~e~~~~r~~~~a~~pl 422 (467)
T KOG4780|consen 390 SKKLSRSVTWADQNDGRGELCEVRNNDNAAGPL 422 (467)
T ss_pred cccccccchhhhccccccchhheeccCceeccc
Confidence 778999999999999999999999999999874
No 95
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.62 E-value=72 Score=23.83 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=17.3
Q ss_pred hCchhHHh-hhcCCCCcEEEEeecC
Q 028412 19 KNPDLYGA-LAKGQSPKFLVFACSD 42 (209)
Q Consensus 19 ~~~~~~~~-l~~gq~P~~~vitC~D 42 (209)
++.+|.+. +..|.+|+++|++|.+
T Consensus 54 kDsDF~~la~~~G~Ppki~wLr~gN 78 (113)
T COG4634 54 KDSDFADLALTLGSPPKIVWLRCGN 78 (113)
T ss_pred cCccHHHHHHHcCCCCeEEEEEecC
Confidence 56666543 3467788999999976
No 96
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=25.55 E-value=46 Score=25.09 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=11.4
Q ss_pred ceEEEeccCCCCc
Q 028412 93 ENIVVIGHSCCGG 105 (209)
Q Consensus 93 ~~IvV~GHt~CGa 105 (209)
+.|+|+|++++|=
T Consensus 1 ~~i~~~G~~~~GK 13 (168)
T cd01897 1 PTLVIAGYPNVGK 13 (168)
T ss_pred CeEEEEcCCCCCH
Confidence 5799999999994
No 97
>PRK14435 acylphosphatase; Provisional
Probab=25.49 E-value=59 Score=23.01 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+.+..+|.|+...
T Consensus 27 ~~gl~G~V~N~~dG~Vei~~ 46 (90)
T PRK14435 27 SLGVKGYVMNMDDGSVFIHA 46 (90)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 56799999999999987754
No 98
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.81 E-value=58 Score=31.81 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=17.4
Q ss_pred HHHhcCc-----ceEEEeccC------------CCCccccc
Q 028412 86 AVLHLKV-----ENIVVIGHS------------CCGGIKGL 109 (209)
Q Consensus 86 av~~L~v-----~~IvV~GHt------------~CGav~a~ 109 (209)
|++.+|. +.|++|||- ||||+..+
T Consensus 551 aLKmmgLte~fAp~Vvl~GHgSqS~NNPy~aaLdCGACgGa 591 (880)
T COG3002 551 ALKMMGLTEEFAPLVVLVGHGSQSQNNPYRAALDCGACGGA 591 (880)
T ss_pred HHHHhCchhhhCceEEEeccccccCCCchhhhcccccccCc
Confidence 4445554 789999995 69988754
No 99
>PRK14424 acylphosphatase; Provisional
Probab=24.78 E-value=61 Score=23.27 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.7
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+-++.+|.|+.+.
T Consensus 32 ~~gl~G~V~N~~dG~Vei~~ 51 (94)
T PRK14424 32 ALGLRGWVANLEDGTVEAMI 51 (94)
T ss_pred HcCCeEEEEECCCCCEEEEE
Confidence 56799999999999887654
No 100
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=24.29 E-value=1.7e+02 Score=22.94 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=16.9
Q ss_pred HHHHHHHhcCcceEEEeccC
Q 028412 82 AIEYAVLHLKVENIVVIGHS 101 (209)
Q Consensus 82 sleyav~~L~v~~IvV~GHt 101 (209)
.|+.-+...|+++|||+|=.
T Consensus 104 ~L~~~L~~~gi~~vvi~G~~ 123 (179)
T cd01015 104 SLAATLTARGVDTLIVAGCS 123 (179)
T ss_pred cHHHHHHHcCCCEEEEeeec
Confidence 47777889999999999854
No 101
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=24.10 E-value=88 Score=22.88 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCcccc
Q 028412 81 AAIEYAVLHLKVENIVVIGHSCCGGIKG 108 (209)
Q Consensus 81 asleyav~~L~v~~IvV~GHt~CGav~a 108 (209)
..|.-.....+-..|+|+|||==|++..
T Consensus 52 ~~l~~~~~~~~~~~i~itGHSLGGalA~ 79 (140)
T PF01764_consen 52 DALKELVEKYPDYSIVITGHSLGGALAS 79 (140)
T ss_dssp HHHHHHHHHSTTSEEEEEEETHHHHHHH
T ss_pred HHHHHHHhcccCccchhhccchHHHHHH
Confidence 4444455555668999999987777643
No 102
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=23.25 E-value=31 Score=25.14 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.8
Q ss_pred EEEEEEEccCCeE
Q 028412 182 LKGAHYDFVNGKF 194 (209)
Q Consensus 182 v~G~~yDi~tG~v 194 (209)
+|++.||++||+.
T Consensus 69 lH~~~f~L~tG~~ 81 (104)
T PF13806_consen 69 LHKWRFDLRTGEC 81 (104)
T ss_dssp TTTEEEETTTTEE
T ss_pred CCCCeEECCCcCc
Confidence 6999999999984
No 103
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=22.75 E-value=1.8e+02 Score=23.49 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=27.2
Q ss_pred CCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCC
Q 028412 53 FQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCG 104 (209)
Q Consensus 53 ~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CG 104 (209)
..+||.++-++--+-.... -|+.-+..+|++.|||+|=+--.
T Consensus 113 ~~~~d~vi~K~~~saF~~T----------~L~~~Lr~~gi~~lii~Gv~T~~ 154 (203)
T cd01013 113 PQPDDTVLTKWRYSAFKRS----------PLLERLKESGRDQLIITGVYAHI 154 (203)
T ss_pred CCCCCEEEeCCCcCCcCCC----------CHHHHHHHcCCCEEEEEEeccCh
Confidence 3467877666544433221 35556889999999999964433
No 104
>PRK14447 acylphosphatase; Provisional
Probab=22.45 E-value=1e+02 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=16.1
Q ss_pred ceeEEEEEEEccCC-eEEEE
Q 028412 179 TLALKGAHYDFVNG-KFELW 197 (209)
Q Consensus 179 ~l~v~G~~yDi~tG-~v~~~ 197 (209)
++.|.||+.+..+| .|+.+
T Consensus 29 ~~gl~G~V~N~~dG~~Vei~ 48 (95)
T PRK14447 29 RNGVRGWVRNRSDGRTVEAV 48 (95)
T ss_pred hcCeEEEEEECCCCCEEEEE
Confidence 57799999999999 58764
No 105
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=22.26 E-value=3.7e+02 Score=20.71 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=15.7
Q ss_pred hHHHHHHHHhcCcceEEEecc
Q 028412 80 GAAIEYAVLHLKVENIVVIGH 100 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GH 100 (209)
..++++| .+||.+.|+++|=
T Consensus 144 ~~a~~lA-~~lG~~~I~L~G~ 163 (170)
T PF01973_consen 144 NTALQLA-YYLGFKPIYLIGQ 163 (170)
T ss_pred HHHHHHH-HHHCCCcEEEEee
Confidence 3566666 6799999999984
No 106
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=22.20 E-value=82 Score=19.89 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=21.2
Q ss_pred CCcchHHHHHHHHHHHHh-hCchhHHhh
Q 028412 1 MANDAYEDAIAGLTKLLR-KNPDLYGAL 27 (209)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~-~~~~~~~~l 27 (209)
|++||+++|++.-+++++ -+|.+.+.|
T Consensus 12 L~~MS~eEI~~er~eL~~~LdP~li~~L 39 (49)
T PF08621_consen 12 LASMSPEEIEEEREELLESLDPKLIEFL 39 (49)
T ss_pred HHhCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 478999999999888887 467666555
No 107
>PRK01160 hypothetical protein; Provisional
Probab=22.18 E-value=3e+02 Score=22.24 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=50.8
Q ss_pred hhcCCCCcEEEEeecCCCCChh-hhcCCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhc--Ccc-eEEEeccCC
Q 028412 27 LAKGQSPKFLVFACSDSRVCPS-HILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHL--KVE-NIVVIGHSC 102 (209)
Q Consensus 27 l~~gq~P~~~vitC~DSRv~p~-~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L--~v~-~IvV~GHt~ 102 (209)
+..|..|++.++-.==-|-+.. .++. .....+.++|..+.++. ++..+|+.|...+ +.+ .|.|-|-.|
T Consensus 55 l~~g~~P~laIvD~kTkR~~~~~~i~~-~~~~~i~V~NPpGtIt~-------el~~ai~~a~~~~~~~~~~~I~VdGEED 126 (178)
T PRK01160 55 LRVGLKPFLAIYDLKTKRREYKPSIFE-HEEVSITVRNPPGTITL-------ALLRAIKKAFSLIERGKKVRIEVNGEED 126 (178)
T ss_pred HHCCCCCCEEEEeCccccCCCcccccc-ccccEEEEECCCCcccH-------HHHHHHHHHHHhhhcCCeEEEEEcChHH
Confidence 4678899999998877777643 3322 23445889999999975 3667888885433 222 577777777
Q ss_pred CCcccccc
Q 028412 103 CGGIKGLM 110 (209)
Q Consensus 103 CGav~a~~ 110 (209)
=-++-+.+
T Consensus 127 La~lP~il 134 (178)
T PRK01160 127 LAVIPAVL 134 (178)
T ss_pred HHHHHHHH
Confidence 66554433
No 108
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=21.66 E-value=35 Score=25.78 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=12.3
Q ss_pred eEEEEEEEccCCeEEE
Q 028412 181 ALKGAHYDFVNGKFEL 196 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~~ 196 (209)
..|||.|| .||++..
T Consensus 79 P~Hgw~Fd-~tG~~~~ 93 (129)
T cd04337 79 PYHGWEYD-GDGECTK 93 (129)
T ss_pred CCCCCEEC-CCCCEEe
Confidence 47999999 8998643
No 109
>PRK14442 acylphosphatase; Provisional
Probab=21.56 E-value=1.3e+02 Score=21.29 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 028412 179 TLALKGAHYDFVNGKFELWD 198 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~v~~~~ 198 (209)
++.|.||+-++.+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14442 29 RLELDGWVRNLDDGRVEVVW 48 (91)
T ss_pred HcCCEEEEEECCCCCEEEEE
Confidence 57899999999999887653
No 110
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=21.56 E-value=58 Score=25.60 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=10.5
Q ss_pred eEEEeccCCCCc
Q 028412 94 NIVVIGHSCCGG 105 (209)
Q Consensus 94 ~IvV~GHt~CGa 105 (209)
.|+++||.++|=
T Consensus 2 ~i~i~G~~~~GK 13 (192)
T cd01889 2 NVGVLGHVDSGK 13 (192)
T ss_pred eEEEEecCCCCH
Confidence 489999999993
No 111
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=21.45 E-value=1e+02 Score=17.57 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.7
Q ss_pred EEEEccCCeEEEEe
Q 028412 185 AHYDFVNGKFELWD 198 (209)
Q Consensus 185 ~~yDi~tG~v~~~~ 198 (209)
++||+.++.+..+.
T Consensus 4 ~~yd~~~~~i~~F~ 17 (37)
T PF07453_consen 4 YVYDLNTNEIKSFD 17 (37)
T ss_pred EEEECCCCeEEEEc
Confidence 68999999875543
No 112
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=21.23 E-value=34 Score=25.52 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=13.2
Q ss_pred eEEEEEEEccCCeEEEE
Q 028412 181 ALKGAHYDFVNGKFELW 197 (209)
Q Consensus 181 ~v~G~~yDi~tG~v~~~ 197 (209)
..|||.|| .||++.-.
T Consensus 66 p~Hgw~Fd-~tG~~~~~ 81 (123)
T cd03535 66 PYHGWTYR-NTGRLVGV 81 (123)
T ss_pred CcCCCEEC-CCcCEeeC
Confidence 47999999 89997554
No 113
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=21.07 E-value=2.1e+02 Score=23.34 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=34.4
Q ss_pred cCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccc---cchhHHHHHHHHhcCcceEEEeccCCCCcc
Q 028412 41 SDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKY---SGAGAAIEYAVLHLKVENIVVIGHSCCGGI 106 (209)
Q Consensus 41 ~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~---~~~~asleyav~~L~v~~IvV~GHt~CGav 106 (209)
.+..+.|+. ...++|.++.++...-...++ .+ ......|+-.+..+|++.|+|||=.-.--|
T Consensus 96 ~g~~i~~~L--~~~~~~~vi~K~~~~~~~~~s--aF~~~~~~~t~L~~~L~~~gi~~lvi~G~~t~~CV 160 (212)
T PTZ00331 96 KGAQLHKDL--VVERIDIIIRKGTNRDVDSYS--AFDNDKGSKTGLAQILKAHGVRRVFICGLAFDFCV 160 (212)
T ss_pred CcccCChhh--ccCCCcEEEECCCCCCCceec--CccCCCCCCchHHHHHHHCCCCEEEEEEeccCHHH
Confidence 355555553 245789888876431111000 00 001134666778899999999996544434
No 114
>PRK14450 acylphosphatase; Provisional
Probab=21.05 E-value=1.3e+02 Score=21.18 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.2
Q ss_pred ceeEEEEEEEccCCe-EEEE
Q 028412 179 TLALKGAHYDFVNGK-FELW 197 (209)
Q Consensus 179 ~l~v~G~~yDi~tG~-v~~~ 197 (209)
++.|.||+-++.+|. |+.+
T Consensus 27 ~~~l~G~V~N~~dG~~Vei~ 46 (91)
T PRK14450 27 RLGLCGYAKNLANGNEVEVV 46 (91)
T ss_pred HcCCEEEEEECCCCCEEEEE
Confidence 577999999999995 8765
No 115
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=21.01 E-value=1.9e+02 Score=22.02 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=33.2
Q ss_pred CCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccCCCCcccc
Q 028412 55 PGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 108 (209)
Q Consensus 55 ~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt~CGav~a 108 (209)
++|..+.|+--|..... .|+.-+...|+++|+|+|-.-.+-|.+
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~ 128 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLA 128 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEeh
Confidence 39999999866665332 255668889999999999887777654
No 116
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=20.98 E-value=69 Score=22.63 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=10.4
Q ss_pred eEEEeccCCCCc
Q 028412 94 NIVVIGHSCCGG 105 (209)
Q Consensus 94 ~IvV~GHt~CGa 105 (209)
.|+|+|..+||=
T Consensus 1 kI~V~G~~g~GK 12 (119)
T PF08477_consen 1 KIVVLGDSGVGK 12 (119)
T ss_dssp EEEEECSTTSSH
T ss_pred CEEEECcCCCCH
Confidence 589999999993
No 117
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=20.83 E-value=1.1e+02 Score=24.27 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.2
Q ss_pred HHhcCcceEEEeccCCCCcc
Q 028412 87 VLHLKVENIVVIGHSCCGGI 106 (209)
Q Consensus 87 v~~L~v~~IvV~GHt~CGav 106 (209)
+......+|+|-||||-=+-
T Consensus 109 L~~~p~~~i~V~GHTD~~Gs 128 (190)
T COG2885 109 LKKNPITRILVEGHTDSTGS 128 (190)
T ss_pred HHhCCCcEEEEEecCCCCCC
Confidence 33444689999999998764
No 118
>PF01888 CbiD: CbiD; InterPro: IPR002748 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiD, an essential protein for cobalamin biosynthesis in both Salmonella typhimurium and Bacillus megaterium. A deletion mutant of CbiD suggests that this enzyme is involved in C-1 methylation and deacylation reactions required during the ring contraction process in the anaerobic pathway to cobalamin (similar role as CobF) []. The CbiD protein has a putative S-AdoMet binding site []. CbiD has no counterpart in the aerobic pathway.; GO: 0016740 transferase activity, 0009236 cobalamin biosynthetic process; PDB: 1SR8_A.
Probab=20.64 E-value=61 Score=27.90 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=15.1
Q ss_pred CCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEeccC
Q 028412 55 PGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHS 101 (209)
Q Consensus 55 ~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~GHt 101 (209)
|.+.||. +||.+.. +|++|.. .++++|+++||-
T Consensus 220 ~~~~~v~--~gnfiG~-----------~L~~a~~-~g~~~vll~G~~ 252 (261)
T PF01888_consen 220 PEEAIVQ--MGNFIGF-----------ALEEAAE-KGFKKVLLVGHI 252 (261)
T ss_dssp --EEEE--------TT------------HHHHTT--SSEEE-EEE-H
T ss_pred chhcEEE--ecchhHH-----------HHHHHHH-cCCCEEEEeccc
Confidence 4455553 5887753 5776665 589999999983
No 119
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.64 E-value=84 Score=18.05 Aligned_cols=16 Identities=19% Similarity=-0.101 Sum_probs=11.3
Q ss_pred EEEEccCCeEEEEecc
Q 028412 185 AHYDFVNGKFELWDLD 200 (209)
Q Consensus 185 ~~yDi~tG~v~~~~~~ 200 (209)
+-+|.+||++.+-...
T Consensus 13 ~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 13 YALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTTSEEEEEES
T ss_pred EEEECCCCCEEEeeeC
Confidence 4579999998664433
No 120
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=20.59 E-value=97 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=22.3
Q ss_pred hHHHHHHHHhcCcceEEEeccCCCCccc
Q 028412 80 GAAIEYAVLHLKVENIVVIGHSCCGGIK 107 (209)
Q Consensus 80 ~asleyav~~L~v~~IvV~GHt~CGav~ 107 (209)
...+.-.++.++.+.++++|||-=|.+.
T Consensus 53 ~~~l~~~l~~~~~~~~~lvG~S~Gg~~a 80 (228)
T PF12697_consen 53 AEDLAELLDALGIKKVILVGHSMGGMIA 80 (228)
T ss_dssp HHHHHHHHHHTTTSSEEEEEETHHHHHH
T ss_pred hhhhhhcccccccccccccccccccccc
Confidence 4566778889999999999999866544
No 121
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=20.47 E-value=56 Score=26.60 Aligned_cols=12 Identities=58% Similarity=0.883 Sum_probs=10.4
Q ss_pred eEEEeccCCCCc
Q 028412 94 NIVVIGHSCCGG 105 (209)
Q Consensus 94 ~IvV~GHt~CGa 105 (209)
.|.|+||.+||=
T Consensus 1 nv~i~Gh~~~GK 12 (219)
T cd01883 1 NLVVIGHVDAGK 12 (219)
T ss_pred CEEEecCCCCCh
Confidence 478999999993
No 122
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=20.30 E-value=83 Score=22.93 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.4
Q ss_pred CceeEEEEEEEccCCeEEE
Q 028412 178 NTLALKGAHYDFVNGKFEL 196 (209)
Q Consensus 178 g~l~v~G~~yDi~tG~v~~ 196 (209)
.+|.|.||+.+...|.|+-
T Consensus 32 ~~lGlrGWv~Nt~~GtvkG 50 (98)
T KOG3360|consen 32 KKLGLRGWVMNTSEGTVKG 50 (98)
T ss_pred HhhcceEEEEecCCceEEE
Confidence 3688999999999999853
No 123
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=20.27 E-value=1.6e+02 Score=26.25 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=29.4
Q ss_pred hhhcCCCCCceEEEEeecCCCCCCCcccccchhHHHHHHHHhcCcceEEEec
Q 028412 48 SHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIG 99 (209)
Q Consensus 48 ~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~asleyav~~L~v~~IvV~G 99 (209)
.++.++.+|| .||.|.||-. +..++---+..+|++.|=|+=
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVR 193 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVR 193 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEee
Confidence 3556889999 7999999964 333333356789999886653
No 124
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=20.09 E-value=3.3e+02 Score=22.67 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHh--------hCchhHHhhhcCCCCcEEEEeec
Q 028412 3 NDAYEDAIAGLTKLLR--------KNPDLYGALAKGQSPKFLVFACS 41 (209)
Q Consensus 3 ~~~~~~~l~~~~~~~~--------~~~~~~~~l~~gq~P~~~vitC~ 41 (209)
+.++.+..++..++.+ -+|.+|+++.-.+-|- +|++|.
T Consensus 126 ~nsfk~Ta~~v~~L~~~~~~~gv~IDP~lF~~F~I~~VPa-fVv~C~ 171 (212)
T PRK13730 126 NNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRSVPA-LVVFCS 171 (212)
T ss_pred CCCHHHHHHHHHHHhccCCCCceeECHHHHHhcCCccccE-EEEEcC
Confidence 4455666666666543 2788888887777774 445675
Done!