BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028413
(209 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576280|ref|XP_002529033.1| carboxy-lyase, putative [Ricinus communis]
gi|223531513|gb|EEF33344.1| carboxy-lyase, putative [Ricinus communis]
Length = 302
Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/206 (77%), Positives = 178/206 (86%), Gaps = 1/206 (0%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MGPDHPHYLQ+ EL E+A+LLDCT+W GAGPGLMDA KGA+QAGKPVGGFK+ KEAGE
Sbjct: 97 MGPDHPHYLQALELSREVAKLLDCTSWMGAGPGLMDATIKGALQAGKPVGGFKIAKEAGE 156
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
WTASNFHPYLP ETYLTCRFFSARKHGL+D AVRN DRTAVVALPGG+GTLDEMFEIL
Sbjct: 157 WTASNFHPYLPSETYLTCRFFSARKHGLVDAAVRNTRSDRTAVVALPGGIGTLDEMFEIL 216
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
ALIQLERIGS LPVPF+VMNYDSFY+KLLDF+ +CEDWGTV+K EV LWKIC+SNSEAL
Sbjct: 217 ALIQLERIGSALPVPFIVMNYDSFYQKLLDFIQNCEDWGTVSKGEVTPLWKICNSNSEAL 276
Query: 181 SYLAEFYDL-SSIDKRVHEVNLKSTH 205
+YL +FY+L SS D+ H S H
Sbjct: 277 AYLTDFYNLHSSSDEYGHGKMPTSAH 302
>gi|156138540|emb|CAO91858.1| putative lysine decarbxylase [Nicotiana tabacum]
Length = 305
Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 150/193 (77%), Positives = 177/193 (91%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MGP+HPHY+++FELG +IA LLDCTTWSGAGPGLMDA T+GA+QAGKPVGGFK+G+EAGE
Sbjct: 98 MGPEHPHYIKTFELGSKIATLLDCTTWSGAGPGLMDAATQGALQAGKPVGGFKIGREAGE 157
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
WTASNFHPYLP E+YLTCRFFSARKHGL+D VR S +RTAVVALPGG+GTLDE+FEI+
Sbjct: 158 WTASNFHPYLPSESYLTCRFFSARKHGLVDAVVRCKSSERTAVVALPGGIGTLDEIFEIM 217
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
ALIQLERIGS+LPVPFL+MNYDSFY LL+FL DCE WGTV+K+EV+SLWK+C++NSEAL
Sbjct: 218 ALIQLERIGSQLPVPFLLMNYDSFYSNLLEFLNDCEKWGTVSKNEVSSLWKVCNNNSEAL 277
Query: 181 SYLAEFYDLSSID 193
+YL EFY LS ++
Sbjct: 278 AYLTEFYGLSPVE 290
>gi|356527115|ref|XP_003532159.1| PREDICTED: probable cytokinin riboside 5'-monophosphate
phosphoribohydrolase LOGL3-like [Glycine max]
Length = 305
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/205 (76%), Positives = 178/205 (86%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MGP H HY+Q+ EL EIA LLDCT+WSGAGPGLMDAVT+G+M AGKPVGGFK+G+EAGE
Sbjct: 96 MGPSHSHYVQAQELAKEIANLLDCTSWSGAGPGLMDAVTQGSMLAGKPVGGFKIGREAGE 155
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
WTASNFHPYLP E YLT RFFSARKHGL+D VRN+S D+TAVVALPGG+GTLDE+FEIL
Sbjct: 156 WTASNFHPYLPSENYLTFRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDEVFEIL 215
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
ALIQLERIGS+ PVPFL+MNYDSFY KLL+FL DCE WGTV+K EVASLWK+C+SNSEAL
Sbjct: 216 ALIQLERIGSKFPVPFLLMNYDSFYSKLLEFLNDCEGWGTVSKGEVASLWKVCNSNSEAL 275
Query: 181 SYLAEFYDLSSIDKRVHEVNLKSTH 205
+YL EFY +SS DK + L ST+
Sbjct: 276 AYLEEFYGISSSDKSKNVTKLYSTY 300
>gi|224100075|ref|XP_002311733.1| predicted protein [Populus trichocarpa]
gi|222851553|gb|EEE89100.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 155/189 (82%), Positives = 174/189 (92%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MGPDHPHY Q+ ELG E+A LLDCT+W+GAGPGLMDA TKGA++AGKPVGGFK+ KEAGE
Sbjct: 37 MGPDHPHYSQALELGREVANLLDCTSWTGAGPGLMDAATKGALEAGKPVGGFKIAKEAGE 96
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
WTASNFH YLP ETYLTCRFFSARKHGL+D AVR+ DRTAVVALPGG+GTLDEMFEIL
Sbjct: 97 WTASNFHSYLPSETYLTCRFFSARKHGLVDAAVRSSCSDRTAVVALPGGIGTLDEMFEIL 156
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQL+RIGSELPVPFLVMNYDS+Y+KLLDFLGDCE+WGTV+K EVASLWKIC++NSEAL
Sbjct: 157 TLIQLQRIGSELPVPFLVMNYDSYYQKLLDFLGDCENWGTVSKGEVASLWKICENNSEAL 216
Query: 181 SYLAEFYDL 189
+YLA+FY L
Sbjct: 217 AYLADFYGL 225
>gi|357459923|ref|XP_003600243.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
gi|217074988|gb|ACJ85854.1| unknown [Medicago truncatula]
gi|355489291|gb|AES70494.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
Length = 312
Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 158/210 (75%), Positives = 181/210 (86%), Gaps = 1/210 (0%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MG H HY+Q+ EL EIA LLD TTWSGAGPGLMDAVT+GA+ AGKPVGGFK+G+EAGE
Sbjct: 103 MGSSHSHYVQAQELAKEIANLLDSTTWSGAGPGLMDAVTQGALLAGKPVGGFKIGREAGE 162
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
WTASNFHPYLP E YLTCRFFSARKHGL+D VRN+S D+TAVVALPGG+GTLDE+FE+L
Sbjct: 163 WTASNFHPYLPSENYLTCRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDELFEML 222
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
ALIQLERIGS+LPVPFL+MNYDSFY KLLDFL CED GTV+K EVASLWK+C+SNSEAL
Sbjct: 223 ALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNSNSEAL 282
Query: 181 SYLAEFYDLSSID-KRVHEVNLKSTHGIVS 209
+YLA+FY +SS D + E L+STH + S
Sbjct: 283 AYLADFYCISSGDISQKKETKLQSTHDLPS 312
>gi|225460791|ref|XP_002276560.1| PREDICTED: uncharacterized protein LOC100243479 [Vitis vinifera]
gi|297737525|emb|CBI26726.3| unnamed protein product [Vitis vinifera]
Length = 310
Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/209 (74%), Positives = 178/209 (85%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MGPDH HYLQ+ ELG E+A LLDCT+W+GAGPGLMDA +KGA+QAGKPVGGFK+G+EAG+
Sbjct: 93 MGPDHSHYLQALELGREVANLLDCTSWTGAGPGLMDAASKGALQAGKPVGGFKIGREAGQ 152
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
TA +FHPYLP ETY TCRFFSARKHGL+D AVR+ +CDRTAVVALPGG+GTLDE+FEIL
Sbjct: 153 QTALSFHPYLPSETYFTCRFFSARKHGLVDAAVRSCNCDRTAVVALPGGIGTLDEVFEIL 212
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
ALIQL+RIGSELPVPFL+MNYDSFY KLLDFL D E WGTV K EV SLWK+C++NSEAL
Sbjct: 213 ALIQLQRIGSELPVPFLLMNYDSFYSKLLDFLSDSECWGTVCKGEVESLWKVCNNNSEAL 272
Query: 181 SYLAEFYDLSSIDKRVHEVNLKSTHGIVS 209
SYLAEFYDL D E L + G +S
Sbjct: 273 SYLAEFYDLPLGDNGKCETGLATASGPIS 301
>gi|449467507|ref|XP_004151464.1| PREDICTED: probable cytokinin riboside 5'-monophosphate
phosphoribohydrolase LOGL9-like [Cucumis sativus]
gi|449524603|ref|XP_004169311.1| PREDICTED: probable cytokinin riboside 5'-monophosphate
phosphoribohydrolase LOGL9-like [Cucumis sativus]
Length = 298
Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 149/205 (72%), Positives = 175/205 (85%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MGPDH HY Q+FEL EI+ LLDCTTWSG GPGLMDAVTKGA+QAG PVGGFK+G+E+GE
Sbjct: 94 MGPDHAHYKQAFELSREISELLDCTTWSGVGPGLMDAVTKGALQAGNPVGGFKIGRESGE 153
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
WT+S FHPYLP ETY TCRFFSARKHGL+D AVR+ S DRTA V LPGG+GT DE+FEIL
Sbjct: 154 WTSSKFHPYLPTETYFTCRFFSARKHGLVDAAVRSCSSDRTAFVTLPGGIGTFDEVFEIL 213
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
ALIQL RIGS+LPVPFL+MNYDSFY KLL+F DCE+WGT+AK EV SLWK+CD+N++A+
Sbjct: 214 ALIQLRRIGSKLPVPFLLMNYDSFYSKLLEFFNDCENWGTLAKGEVDSLWKVCDNNADAV 273
Query: 181 SYLAEFYDLSSIDKRVHEVNLKSTH 205
+YL+ FY L D+ +EV L+STH
Sbjct: 274 AYLSSFYSLCDQDRVKNEVGLESTH 298
>gi|357459921|ref|XP_003600242.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
gi|355489290|gb|AES70493.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
Length = 312
Score = 328 bits (842), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 156/210 (74%), Positives = 179/210 (85%), Gaps = 1/210 (0%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MG H HY+Q+ EL E LLD TTWSGAGPGLMDAVT+GA+ AGKPVGGFK+G+EAGE
Sbjct: 103 MGSSHSHYVQAQELAKEATNLLDSTTWSGAGPGLMDAVTQGALLAGKPVGGFKIGREAGE 162
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
WTASNFHPYLP E YLTCRFFSARKHGL+D VRN+S D+TAVVALPGG+GTLDE+FE+L
Sbjct: 163 WTASNFHPYLPSENYLTCRFFSARKHGLVDAVVRNNSFDKTAVVALPGGIGTLDELFEML 222
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
ALIQLERIGS+LPVPFL+MNYDSFY KLLDFL CED GTV+K EVASLWK+C+SNSEAL
Sbjct: 223 ALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDVCEDRGTVSKGEVASLWKVCNSNSEAL 282
Query: 181 SYLAEFYDLSSID-KRVHEVNLKSTHGIVS 209
+YLA+FY +SS D + E L+STH + S
Sbjct: 283 AYLADFYCISSGDISQKKETKLQSTHDLPS 312
>gi|50399936|gb|AAT76324.1| expressed protein [Oryza sativa Japonica Group]
gi|108709566|gb|ABF97361.1| Possible lysine decarboxylase family protein, expressed [Oryza
sativa Japonica Group]
gi|215736866|dbj|BAG95795.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 335
Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 144/192 (75%), Positives = 168/192 (87%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HPHYL + EL EIARLLDCTTWSGAGPG MDA T+GA++AGKPVGGFK+GKEAGEWT
Sbjct: 130 PTHPHYLHAAELSREIARLLDCTTWSGAGPGFMDAATQGALEAGKPVGGFKIGKEAGEWT 189
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
SNFHPYLP E+YLTCRFFSARKHGL+D AVRN DRTA++ALPGG+GTLDE+FE++AL
Sbjct: 190 TSNFHPYLPSESYLTCRFFSARKHGLVDAAVRNCPTDRTAIIALPGGIGTLDELFEMMAL 249
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS LPVPFL++NYDS+Y KLLDFL DCE+WGTVA EVASLWK+C+ N EAL Y
Sbjct: 250 IQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTVAPGEVASLWKVCNGNHEALEY 309
Query: 183 LAEFYDLSSIDK 194
LA+FY++ ++
Sbjct: 310 LAQFYNVPLAER 321
>gi|242038951|ref|XP_002466870.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor]
gi|241920724|gb|EER93868.1| hypothetical protein SORBIDRAFT_01g015500 [Sorghum bicolor]
Length = 329
Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 146/198 (73%), Positives = 172/198 (86%), Gaps = 1/198 (0%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HPH+LQ+ EL EIARLLDCTTW+GAGPGLMDA +GA++AGKPVGG K+ KEAGEWT
Sbjct: 120 PTHPHFLQTTELAREIARLLDCTTWTGAGPGLMDAAIQGALEAGKPVGGLKIAKEAGEWT 179
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+S FHPYLP ETYLTCRFFSARKHGL+D AVR+ DRTAVVALPGGVGTLDE+FEI+AL
Sbjct: 180 SSGFHPYLPPETYLTCRFFSARKHGLVDAAVRSSPTDRTAVVALPGGVGTLDELFEIMAL 239
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS LPVPFL++NYDS+Y KLLDFL DC++WGTVA EV SLWK+CD N EAL Y
Sbjct: 240 IQLERIGSALPVPFLLLNYDSYYSKLLDFLNDCQEWGTVAPGEVESLWKVCDGNHEALEY 299
Query: 183 LAEFYDLSSIDKRVHEVN 200
LAEFY++ + D+R ++++
Sbjct: 300 LAEFYNVPA-DQRNYQIS 316
>gi|357115866|ref|XP_003559706.1| PREDICTED: uncharacterized protein LOC100823209 [Brachypodium
distachyon]
Length = 334
Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 141/195 (72%), Positives = 166/195 (85%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HPHY Q+ EL E ++LLDCTTW+GAGPGLMDA +GA+QA KPVGGFK+GKEAGEWT
Sbjct: 125 PTHPHYHQTAELARETSKLLDCTTWTGAGPGLMDAAIQGALQAEKPVGGFKIGKEAGEWT 184
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
ASNFHPYLP E+YLTCRFFSARKHGL+D VRN S D+TA+VALPGG+GTLDE+FEI+AL
Sbjct: 185 ASNFHPYLPPESYLTCRFFSARKHGLVDAVVRNSSTDKTAIVALPGGIGTLDEVFEIMAL 244
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS LPVPFL+MNYDS+Y KLL+FL D +WGTVA EVASLWK+C+ N EAL Y
Sbjct: 245 IQLERIGSALPVPFLLMNYDSYYSKLLEFLNDSTEWGTVAPGEVASLWKVCNGNHEALEY 304
Query: 183 LAEFYDLSSIDKRVH 197
LA+FY++ + + H
Sbjct: 305 LAQFYNVPAGQRNYH 319
>gi|219884091|gb|ACL52420.1| unknown [Zea mays]
Length = 314
Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/192 (75%), Positives = 164/192 (85%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HPH+LQ+ EL EIARLLDCTTW+GAGPGLMDA +GA +A KPVGG K+ KEAGEWT
Sbjct: 121 PTHPHFLQTTELAREIARLLDCTTWTGAGPGLMDAAIQGAFEADKPVGGLKIAKEAGEWT 180
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+S FHPYLP ETYLTCRFFSARKHGL+D AVR+ S DRTAVVALPGGVGTLDE+FEILAL
Sbjct: 181 SSGFHPYLPPETYLTCRFFSARKHGLVDAAVRSSSTDRTAVVALPGGVGTLDELFEILAL 240
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS LPVP L++NYDS+Y KLL+FL DC++WGTVA EVASLWK+CD N EAL Y
Sbjct: 241 IQLERIGSALPVPVLLLNYDSYYSKLLEFLNDCQEWGTVAPGEVASLWKVCDGNHEALEY 300
Query: 183 LAEFYDLSSIDK 194
LAEFY + ++
Sbjct: 301 LAEFYGVPHNER 312
>gi|226499120|ref|NP_001150828.1| decarboxylase family protein [Zea mays]
gi|195642216|gb|ACG40576.1| decarboxylase family protein [Zea mays]
Length = 314
Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/192 (74%), Positives = 163/192 (84%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HPH+LQ+ EL EIARLL CTTW+GAGPGLMDA +GA +A KPVGG K+ KEAGEWT
Sbjct: 121 PTHPHFLQTTELAREIARLLGCTTWTGAGPGLMDAAIQGAFEADKPVGGLKIAKEAGEWT 180
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+S FHPYLP ETYLTCRFFSARKHGL+D AVR+ S DRTAVVALPGGVGTLDE+FEILAL
Sbjct: 181 SSGFHPYLPPETYLTCRFFSARKHGLVDAAVRSSSTDRTAVVALPGGVGTLDELFEILAL 240
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS LPVP L++NYDS+Y KLL+FL DC++WGTVA EVASLWK+CD N EAL Y
Sbjct: 241 IQLERIGSALPVPVLLLNYDSYYSKLLEFLNDCQEWGTVAPGEVASLWKVCDGNHEALEY 300
Query: 183 LAEFYDLSSIDK 194
LAEFY + ++
Sbjct: 301 LAEFYGVPHNER 312
>gi|18403121|ref|NP_564577.1| putative lysine decarboxylase [Arabidopsis thaliana]
gi|16649027|gb|AAL24365.1| unknown protein [Arabidopsis thaliana]
gi|20260046|gb|AAM13370.1| unknown protein [Arabidopsis thaliana]
gi|332194444|gb|AEE32565.1| putative lysine decarboxylase [Arabidopsis thaliana]
Length = 306
Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 139/202 (68%), Positives = 169/202 (83%), Gaps = 1/202 (0%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+H HYLQ+ EL E A LLDCTTWSGAGPGLMDAVT+GA++A KPVGG K+ KEAGEWT
Sbjct: 101 PNHSHYLQAQELSREAATLLDCTTWSGAGPGLMDAVTEGALEAEKPVGGIKIEKEAGEWT 160
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
AS FHPYLP + Y TCRFFSARKHGL+D +RN+ ++TA++ALPGG+GTLDEMFEILAL
Sbjct: 161 ASKFHPYLPPQNYHTCRFFSARKHGLVDAVIRNNVSEKTAIIALPGGIGTLDEMFEILAL 220
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS LPVPF+VMNYD+FY KLL+F+ CE+ GTV+K EV++LWK+C++N EAL+Y
Sbjct: 221 IQLERIGSALPVPFIVMNYDAFYSKLLEFIETCENLGTVSKGEVSALWKVCNNNFEALTY 280
Query: 183 LAEFYDLSSIDKRVHEVNLKST 204
LAEFYDL ++ E L+ T
Sbjct: 281 LAEFYDLPDGSAKL-ETELRKT 301
>gi|125586974|gb|EAZ27638.1| hypothetical protein OsJ_11582 [Oryza sativa Japonica Group]
Length = 318
Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 135/178 (75%), Positives = 158/178 (88%)
Query: 17 EIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL 76
IARLLDCTTWSGAGPG MDA T+GA++AGKPVGGFK+GKEAGEWT SNFHPYLP E+YL
Sbjct: 127 RIARLLDCTTWSGAGPGFMDAATQGALEAGKPVGGFKIGKEAGEWTTSNFHPYLPSESYL 186
Query: 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
TCRFFSARKHGL+D AVRN DRTA++ALPGG+GTLDE+FE++ALIQLERIGS LPVPF
Sbjct: 187 TCRFFSARKHGLVDAAVRNCPTDRTAIIALPGGIGTLDELFEMMALIQLERIGSTLPVPF 246
Query: 137 LVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDK 194
L++NYDS+Y KLLDFL DCE+WGTVA EVASLWK+C+ N EAL YLA+FY++ ++
Sbjct: 247 LLLNYDSYYSKLLDFLNDCEEWGTVAPGEVASLWKVCNGNHEALEYLAQFYNVPLAER 304
>gi|125544668|gb|EAY90807.1| hypothetical protein OsI_12409 [Oryza sativa Indica Group]
Length = 318
Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 135/178 (75%), Positives = 158/178 (88%)
Query: 17 EIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL 76
IARLLDCTTWSGAGPG MDA T+GA++AGKPVGGFK+GKEAGEWT SNFHPYLP E+YL
Sbjct: 127 RIARLLDCTTWSGAGPGFMDAATQGALEAGKPVGGFKIGKEAGEWTTSNFHPYLPSESYL 186
Query: 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
TCRFFSARKHGL+D AVRN DRTA++ALPGG+GTLDE+FE++ALIQLERIGS LPVPF
Sbjct: 187 TCRFFSARKHGLVDAAVRNCPTDRTAIIALPGGIGTLDELFEMMALIQLERIGSTLPVPF 246
Query: 137 LVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDK 194
L++NYDS+Y KLLDFL DCE+WGTVA EVASLWK+C+ N EAL YLA+FY++ ++
Sbjct: 247 LLLNYDSYYSKLLDFLNDCEEWGTVAPGEVASLWKVCNGNHEALEYLAQFYNVPLAER 304
>gi|294463775|gb|ADE77412.1| unknown [Picea sitchensis]
Length = 317
Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 132/187 (70%), Positives = 158/187 (84%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDH H+LQ+ EL E A LL+CTTWSG G GLMD++ KGA+QAGKPVGGFK+ KEAGEWT
Sbjct: 115 PDHHHFLQAMELARETAGLLECTTWSGVGQGLMDSIIKGALQAGKPVGGFKIAKEAGEWT 174
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+SNFHPYLP ETY+TCRFFSARKHGL+D AVRN+ D T ++ALPGG+GTLDE+FE+L L
Sbjct: 175 SSNFHPYLPPETYMTCRFFSARKHGLVDAAVRNNLTDHTTIIALPGGIGTLDEIFEVLTL 234
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS+ PVPF++MNYD FY KLL F+ CE+WGTV+ EV SLWK+C+ N EAL Y
Sbjct: 235 IQLERIGSKHPVPFILMNYDGFYSKLLQFIDTCENWGTVSHGEVDSLWKVCNCNLEALEY 294
Query: 183 LAEFYDL 189
LA+FYD+
Sbjct: 295 LADFYDI 301
>gi|12322326|gb|AAG51182.1|AC079279_3 unknown protein [Arabidopsis thaliana]
Length = 675
Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 131/187 (70%), Positives = 158/187 (84%), Gaps = 5/187 (2%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+H HYLQ+ EL E A LLDCTTWSGAGPGLMDAVT+GA++A KPVGG K+ KEAGEWT
Sbjct: 101 PNHSHYLQAQELSREAATLLDCTTWSGAGPGLMDAVTEGALEAEKPVGGIKIEKEAGEWT 160
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
AS FHPYLP + Y TCR KHGL+D +RN+ ++TA++ALPGG+GTLDEMFEILAL
Sbjct: 161 ASKFHPYLPPQNYHTCR-----KHGLVDAVIRNNVSEKTAIIALPGGIGTLDEMFEILAL 215
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQLERIGS LPVPF+VMNYD+FY KLL+F+ CE+ GTV+K EV++LWK+C++N EAL+Y
Sbjct: 216 IQLERIGSALPVPFIVMNYDAFYSKLLEFIETCENLGTVSKGEVSALWKVCNNNFEALTY 275
Query: 183 LAEFYDL 189
LAEFYDL
Sbjct: 276 LAEFYDL 282
>gi|297852756|ref|XP_002894259.1| hypothetical protein ARALYDRAFT_314445 [Arabidopsis lyrata subsp.
lyrata]
gi|297340101|gb|EFH70518.1| hypothetical protein ARALYDRAFT_314445 [Arabidopsis lyrata subsp.
lyrata]
Length = 672
Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 132/187 (70%), Positives = 156/187 (83%), Gaps = 5/187 (2%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+H HYLQ+ EL E A LLDCTTWSGAGPGLMDAVTKGA++A KPVGG K+ KEAGEWT
Sbjct: 98 PNHSHYLQAQELSREAANLLDCTTWSGAGPGLMDAVTKGALEAEKPVGGIKIEKEAGEWT 157
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
AS FHPYLP + Y TCR KHGL+D +RN D+TA++ALPGG+GTLDEMFEILAL
Sbjct: 158 ASKFHPYLPPQNYHTCR-----KHGLVDAVIRNSVSDKTAIIALPGGIGTLDEMFEILAL 212
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQL+RIGS L VPF+VMNYDSFY KLL+F+ CE+ GTV+K EV++LWK+C++N EAL+Y
Sbjct: 213 IQLKRIGSALLVPFIVMNYDSFYSKLLEFIETCENLGTVSKGEVSALWKVCNNNFEALTY 272
Query: 183 LAEFYDL 189
LAEFYDL
Sbjct: 273 LAEFYDL 279
>gi|224035267|gb|ACN36709.1| unknown [Zea mays]
Length = 297
Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/178 (75%), Positives = 152/178 (85%)
Query: 17 EIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL 76
IARLL CTTW+GAGPGLMDA +GA +A KPVGG K+ KEAGEWT+S FHPYLP ETYL
Sbjct: 118 RIARLLGCTTWTGAGPGLMDAAIQGAFEADKPVGGLKIAKEAGEWTSSGFHPYLPPETYL 177
Query: 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
TCRFFSARKHGL+D AVR+ S DRTAVVALPGGVGTLDE+FEILALIQLERIGS LPVP
Sbjct: 178 TCRFFSARKHGLVDAAVRSSSTDRTAVVALPGGVGTLDELFEILALIQLERIGSALPVPV 237
Query: 137 LVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDK 194
L++NYDS+Y KLL+FL DC++WGTVA EVASLWK+CD N EAL YLAEFY + ++
Sbjct: 238 LLLNYDSYYSKLLEFLNDCQEWGTVAPGEVASLWKVCDGNHEALEYLAEFYGVPHNER 295
>gi|102140032|gb|ABF70163.1| hypothetical protein MA4_112I10.52 [Musa acuminata]
Length = 208
Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 132/187 (70%), Positives = 156/187 (83%)
Query: 18 IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT 77
+A LLDCTTW+GAGPGLMDA KGA++A KPVGGFK+ +E+GEWT+SNFHPYLP ETYLT
Sbjct: 18 VALLLDCTTWTGAGPGLMDAAFKGALEAKKPVGGFKIARESGEWTSSNFHPYLPPETYLT 77
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
CRFFSARKHGL+D AVRN+ D TAVVALPGG+GTLDE+FEILALIQLERIGS+ PVPFL
Sbjct: 78 CRFFSARKHGLVDAAVRNNPSDMTAVVALPGGIGTLDEVFEILALIQLERIGSKFPVPFL 137
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
+MNYDSFY KLLDFL D WGTVA+ EV +LWK+C NSEA YLAEFY L +
Sbjct: 138 LMNYDSFYSKLLDFLDDSGKWGTVARGEVEALWKVCGGNSEASDYLAEFYGLPQTKMNNN 197
Query: 198 EVNLKST 204
+++++ +
Sbjct: 198 KISVEGS 204
>gi|302798809|ref|XP_002981164.1| hypothetical protein SELMODRAFT_113730 [Selaginella moellendorffii]
gi|300151218|gb|EFJ17865.1| hypothetical protein SELMODRAFT_113730 [Selaginella moellendorffii]
Length = 220
Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 152/188 (80%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHPH+LQ+ ELG E+A LLDCT+W GAGPGLMDA TKGA++AGKPVGGF++ E G WT
Sbjct: 30 PDHPHFLQAMELGREVALLLDCTSWCGAGPGLMDAATKGALEAGKPVGGFRIHNEGGVWT 89
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ HPY+ TYLTCRFFSARKHGL+D VRN DRTA +ALPGGVG+LDE+FE+L L
Sbjct: 90 NTLSHPYMVSGTYLTCRFFSARKHGLVDAGVRNAPSDRTAFLALPGGVGSLDEIFEVLTL 149
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQL RIGS PVPFL++NYD FY LL+FL C +WGTVA+ EV +LW++C +NSEAL Y
Sbjct: 150 IQLRRIGSSFPVPFLLINYDGFYDHLLEFLATCREWGTVAEGEVEALWRVCRNNSEALDY 209
Query: 183 LAEFYDLS 190
LAEFY +S
Sbjct: 210 LAEFYGIS 217
>gi|357459925|ref|XP_003600244.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
gi|355489292|gb|AES70495.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
Length = 176
Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 134/176 (76%), Positives = 155/176 (88%), Gaps = 1/176 (0%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
MDAVT+GA+ AGKPVGGFK+G+EAGEWTASNFHPYLP E YLTCRFFSARKHGL+D VR
Sbjct: 1 MDAVTQGALLAGKPVGGFKIGREAGEWTASNFHPYLPSENYLTCRFFSARKHGLVDAVVR 60
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
N+S D+TAVVALPGG+GTLDE+FE+LALIQLERIGS+LPVPFL+MNYDSFY KLLDFL
Sbjct: 61 NNSFDKTAVVALPGGIGTLDELFEMLALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDV 120
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID-KRVHEVNLKSTHGIVS 209
CED GTV+K EVASLWK+C+SNSEAL+YLA+FY +SS D + E L+STH + S
Sbjct: 121 CEDRGTVSKGEVASLWKVCNSNSEALAYLADFYCISSGDISQKKETKLQSTHDLPS 176
>gi|302801776|ref|XP_002982644.1| hypothetical protein SELMODRAFT_116789 [Selaginella moellendorffii]
gi|300149743|gb|EFJ16397.1| hypothetical protein SELMODRAFT_116789 [Selaginella moellendorffii]
Length = 220
Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 128/193 (66%), Positives = 154/193 (79%), Gaps = 2/193 (1%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHPH+LQ+ ELG E+A LL CT+W GAGPGLMDA TKGA++AGKPVGGF++ E G WT
Sbjct: 30 PDHPHFLQAMELGREVALLLGCTSWCGAGPGLMDAATKGALEAGKPVGGFRIHNEGGVWT 89
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ HPY+ TYLTCRFFSARKHGL+D VRN DRTA +ALPGGVG+LDE+FE+L L
Sbjct: 90 NTLSHPYMVSGTYLTCRFFSARKHGLVDAGVRNAPSDRTAFLALPGGVGSLDEIFEVLTL 149
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQL RIGS PVPFL++NYD FY LL+FL C +WGTVA+ EV +LW++C +NSEAL Y
Sbjct: 150 IQLRRIGSSFPVPFLLINYDGFYDHLLEFLATCREWGTVAEGEVEALWRVCRNNSEALDY 209
Query: 183 LAEFYDLSSIDKR 195
LAEFY +S D+R
Sbjct: 210 LAEFYSIS--DRR 220
>gi|297601231|ref|NP_001050575.2| Os03g0587100 [Oryza sativa Japonica Group]
gi|50399935|gb|AAT76323.1| expressed protein [Oryza sativa Japonica Group]
gi|255674661|dbj|BAF12489.2| Os03g0587100 [Oryza sativa Japonica Group]
Length = 174
Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 119/161 (73%), Positives = 142/161 (88%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
MDA T+GA++AGKPVGGFK+GKEAGEWT SNFHPYLP E+YLTCRFFSARKHGL+D AVR
Sbjct: 1 MDAATQGALEAGKPVGGFKIGKEAGEWTTSNFHPYLPSESYLTCRFFSARKHGLVDAAVR 60
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
N DRTA++ALPGG+GTLDE+FE++ALIQLERIGS LPVPFL++NYDS+Y KLLDFL D
Sbjct: 61 NCPTDRTAIIALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLND 120
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKR 195
CE+WGTVA EVASLWK+C+ N EAL YLA+FY++ ++
Sbjct: 121 CEEWGTVAPGEVASLWKVCNGNHEALEYLAQFYNVPLAERN 161
>gi|414871616|tpg|DAA50173.1| TPA: hypothetical protein ZEAMMB73_787836 [Zea mays]
gi|414871617|tpg|DAA50174.1| TPA: decarboxylase family protein, mRNA isoform 2 [Zea mays]
Length = 162
Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/153 (77%), Positives = 133/153 (86%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
MDA +GA +A KPVGG K+ KEAGEWT+S FHPYLP ETYLTCRFFSARKHGL+D AVR
Sbjct: 1 MDAAIQGAFEADKPVGGLKIAKEAGEWTSSGFHPYLPPETYLTCRFFSARKHGLVDAAVR 60
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
+ S DRTAVVALPGGVGTLDE+FEILALIQLERIGS LPVP L++NYDS+Y KLL+FL D
Sbjct: 61 SSSTDRTAVVALPGGVGTLDELFEILALIQLERIGSALPVPVLLLNYDSYYSKLLEFLND 120
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
C++WGTVA EVASLWK+CD N EAL YLAEFY
Sbjct: 121 CQEWGTVAPGEVASLWKVCDGNHEALEYLAEFY 153
>gi|255081330|ref|XP_002507887.1| predicted protein [Micromonas sp. RCC299]
gi|226523163|gb|ACO69145.1| predicted protein [Micromonas sp. RCC299]
Length = 216
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/186 (59%), Positives = 132/186 (70%), Gaps = 2/186 (1%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG-EWT 62
DHPH+ + EL ++A DCTTWSG G G+M+AVT+G M AGKPV GF + EAG +
Sbjct: 26 DHPHFQHAKELARDVALAHDCTTWSGLGAGMMEAVTQGGMAAGKPVAGFMILLEAGGQRQ 85
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
AS HPYLP E YLT FFSARKHGL+D VRN DRTA ALPGGVGTLDE+FE+LAL
Sbjct: 86 ASRKHPYLPDENYLTTSFFSARKHGLVDAGVRNTPDDRTAFFALPGGVGTLDEIFEVLAL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
+QL RIGS PVPF+VMNYD Y LL FL D +G++ + E+ W+ C +N EAL+
Sbjct: 146 LQLRRIGSAHPVPFVVMNYDGCYDGLLQFLERDMVRYGSLREHELEPHWRACRTNEEALA 205
Query: 182 YLAEFY 187
YL EFY
Sbjct: 206 YLHEFY 211
>gi|308802682|ref|XP_003078654.1| unnamed protein product [Ostreococcus tauri]
gi|116057107|emb|CAL51534.1| unnamed protein product [Ostreococcus tauri]
Length = 260
Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 131/189 (69%), Gaps = 4/189 (2%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA- 63
H HY+ + L EIA LDCTTWSG G G+MDA T+GA+ A KPVGG + EAG+
Sbjct: 72 HSHYVHARSLAKEIAHTLDCTTWSGGGAGMMDAATRGALDANKPVGGIMIDLEAGQRKGT 131
Query: 64 --SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
S HPYLP E+YL RFFSARKHGL+D A R DRTA VALPGGVGTLDE+FEILA
Sbjct: 132 KPSRTHPYLPAESYLCARFFSARKHGLVDAATRATKRDRTAFVALPGGVGTLDEIFEILA 191
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCEDWGTVAKDEVASLWKICDSNSEAL 180
L+QL+R+ + VPFL MNYD Y LLDFL D +G V +E+ L+ CD+N +AL
Sbjct: 192 LVQLKRLDTAHEVPFLFMNYDGCYAGLLDFLKRDLASYGAVTTEELEDLFVACDTNEDAL 251
Query: 181 SYLAEFYDL 189
+YL +FY+L
Sbjct: 252 AYLKKFYNL 260
>gi|303277569|ref|XP_003058078.1| lysine decarboxylase [Micromonas pusilla CCMP1545]
gi|226460735|gb|EEH58029.1| lysine decarboxylase [Micromonas pusilla CCMP1545]
Length = 289
Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 128/186 (68%), Gaps = 2/186 (1%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG-EWT 62
DHPH+ + +L ++A DCTTWSG G G+M+AVT+G M+AGKPV GF + EAG +
Sbjct: 100 DHPHFAMARDLARDVATAYDCTTWSGLGAGMMEAVTRGGMEAGKPVAGFMILLEAGGQRQ 159
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
AS HPYLP E Y T FFSARKHGL+D +R + DRTA ALPGGVGTLDE+FE+LAL
Sbjct: 160 ASRTHPYLPPEVYHTASFFSARKHGLVDAGIRANKTDRTAFFALPGGVGTLDEIFEVLAL 219
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
+QL RIGS VPF+VMNYD + L+ FL D +G++ E+ W +CD N+ A+
Sbjct: 220 LQLRRIGSAHKVPFVVMNYDGCFDGLIKFLEDDMVRYGSLRDKELEPHWVVCDDNAAAMK 279
Query: 182 YLAEFY 187
YL FY
Sbjct: 280 YLETFY 285
>gi|145345352|ref|XP_001417178.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577405|gb|ABO95471.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 223
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 133/187 (71%), Gaps = 2/187 (1%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG-EWTA 63
H HY ++ EL +IA LLDCTTWSG GPGLMDA T+GA+ A + GF + EAG
Sbjct: 37 HSHYARTRELAKDIATLLDCTTWSGLGPGLMDAATRGALDAERAAAGFMILLEAGGARQE 96
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ HPYLP E YL FFSARKHGL+D VR+ ++T VALPGGVGTLDE+FEILAL+
Sbjct: 97 TREHPYLPRECYLNTSFFSARKHGLVDAGVRSALEEKTCFVALPGGVGTLDEIFEILALL 156
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
QL+RIG+ PVPF+VMNYD Y LL+FL D +G +A++E+A W CD+N +AL++
Sbjct: 157 QLKRIGTSHPVPFIVMNYDGCYDGLLEFLRRDMVGYGALAENELAPHWIACDTNEQALAH 216
Query: 183 LAEFYDL 189
L +FY +
Sbjct: 217 LRDFYSI 223
>gi|168024057|ref|XP_001764553.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684131|gb|EDQ70535.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 169
Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 93/160 (58%), Positives = 117/160 (73%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
MDA T+GA++A KPVG F + KEAG W HPYL + Y TCRFF+ARKHGL++ VR
Sbjct: 1 MDAATQGALEAKKPVGCFNIAKEAGTWVTRYVHPYLATQMYFTCRFFTARKHGLVEAGVR 60
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
N+ DRTA + LPGG+GTLDE+FE++AL QL+RIGS PVPFL++NYD+FY LL FL
Sbjct: 61 NNVPDRTAFICLPGGMGTLDELFEVVALKQLDRIGSSFPVPFLILNYDNFYTDLLKFLTK 120
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDK 194
CEDWGTV E S+ + SN +AL YLA+FY +S D+
Sbjct: 121 CEDWGTVRAGEFESICHVSTSNLDALEYLADFYGISEQDR 160
>gi|412988744|emb|CCO15335.1| unknown [Bathycoccus prasinos]
Length = 286
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 120/199 (60%), Gaps = 13/199 (6%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVGGFKVGKEAGEW- 61
+H H+ +S L +A LL+CTTWSG GPGLMDAVT G ++A GK G + E E
Sbjct: 88 EHAHFARSKSLAKAVAVLLECTTWSGIGPGLMDAVTLGGLEANGKASGILILMGEKEERD 147
Query: 62 ---------TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCD-RTAVVALPGGVG 111
+ HPYL Y TC FFSARKHGL+D VRN D +TA LPGG+G
Sbjct: 148 NIEGKVMRRQKTRKHPYLNESQYATCSFFSARKHGLVDAGVRNGKEDTKTAFFCLPGGIG 207
Query: 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCEDWGTVAKDEVASLW 170
T+DE EIL L QL RIGSE VPFL+MNYD + KLL+F+ C + G V + E+
Sbjct: 208 TMDEFAEILTLFQLRRIGSEEKVPFLLMNYDGVFDKLLEFITVSCVEHGLVNEGEMEEHL 267
Query: 171 KICDSNSEALSYLAEFYDL 189
K+C +N EAL YL FY L
Sbjct: 268 KVCSTNEEALEYLKHFYAL 286
>gi|255073401|ref|XP_002500375.1| kinase/lysine decarboxylase [Micromonas sp. RCC299]
gi|226515638|gb|ACO61633.1| kinase/lysine decarboxylase [Micromonas sp. RCC299]
Length = 610
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 1/190 (0%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D+PH+++S ELG ++ LL TW+G GPG+M+A + GAM AGK V G ++ +EAG
Sbjct: 419 DNPHFIRSRELGKMVSELLGTPTWTGGGPGMMEAASLGAMDAGKAVAGIRIEREAGTKVR 478
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
S YL E + C+F S RK L+D VR S DRTA V LPGG+GT+DE+FE+ L
Sbjct: 479 SAAQSYLKPEHTVFCKFLSPRKVALVDAGVRKKSEDRTAYVFLPGGLGTMDELFELFTLY 538
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
QL ++G++ PVP +++NYD FY LLDF+ + GTV E + + ++N E + YL
Sbjct: 539 QLHKLGTDHPVPVIIVNYDGFYDCLLDFVNTMQGHGTVGAGEYDQMV-VKNTNDEVVDYL 597
Query: 184 AEFYDLSSID 193
++Y++ D
Sbjct: 598 KQYYNIEGHD 607
>gi|255072227|ref|XP_002499788.1| ribokinase kinase [Micromonas sp. RCC299]
gi|226515050|gb|ACO61046.1| ribokinase kinase [Micromonas sp. RCC299]
Length = 595
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 119/186 (63%), Gaps = 1/186 (0%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D+PH+++S ELG ++ LL TW+G GPG+M+A + GAM AGK V G ++ +EAG
Sbjct: 411 DNPHFVKSRELGKMVSELLGTPTWTGGGPGMMEAASLGAMDAGKAVAGIRIEREAGTKVR 470
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
S YL E + C+F S RK L+D VR + DRTA V LPGG+GT+DE+FE+ L
Sbjct: 471 SAAQSYLKPEHTVFCKFLSPRKVALVDAGVRKKAEDRTAYVFLPGGLGTMDELFELFTLY 530
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
QL ++G++ PVP +++NYD FY LL+F+ + GTV E + + ++N E + YL
Sbjct: 531 QLHKLGTDHPVPVIIVNYDGFYDCLLNFVETMQGHGTVGAGEYDQMV-VKNTNEEVVEYL 589
Query: 184 AEFYDL 189
E+Y +
Sbjct: 590 REYYQI 595
>gi|384248762|gb|EIE22245.1| putative lysine decarboxylase, partial [Coccomyxa subellipsoidea
C-169]
Length = 183
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 102/147 (69%), Gaps = 2/147 (1%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
PH+ ++ LG ++ARLL CTTWSG GPG+M+A T GAM AGKPVGG ++ +EAG T
Sbjct: 38 PHWDRARHLGADVARLLGCTTWSGGGPGMMEAATLGAMDAGKPVGGIRISREAG--TTVR 95
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
YLP + + CRF S+RK L+D VR DRTA + LPGG+GT+DE+FEIL L+QL
Sbjct: 96 TASYLPTDAAVFCRFLSSRKVALVDAGVRASESDRTAYIFLPGGLGTMDELFEILTLMQL 155
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFL 152
++GS+ VP ++ NYD FY L+ L
Sbjct: 156 NKLGSKHTVPLILCNYDGFYSGLIGLL 182
>gi|29369205|gb|AAO72685.1| unknown [Oryza sativa Japonica Group]
Length = 186
Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 92/111 (82%), Gaps = 1/111 (0%)
Query: 85 KHGLIDCA-VRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
KHGL+D A DRTA++ALPGG+GTLDE+FE++ALIQLERIGS LPVPFL++NYDS
Sbjct: 62 KHGLVDAAGAGTAPTDRTAIIALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDS 121
Query: 144 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDK 194
+Y KLLDFL DCE+WGTVA EVASLWK+C+ N EAL YLA+FY++ ++
Sbjct: 122 YYSKLLDFLNDCEEWGTVAPGEVASLWKVCNGNHEALEYLAQFYNVPLAER 172
>gi|412989135|emb|CCO15726.1| predicted protein [Bathycoccus prasinos]
Length = 630
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 117/190 (61%), Gaps = 2/190 (1%)
Query: 1 MGPDHPHYLQSFELGGEIARLL-DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
+ P+ Y QS +L +A LL D TTW+G GPG+M+A + GA +AGK VGG ++ +EAG
Sbjct: 442 LKPETEIYKQSKDLSRRLAELLGDVTTWTGGGPGMMEAASLGAKEAGKVVGGIRIAREAG 501
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
S YL + + CR+ + RK L D VR D+TA + LPGG+G++DE FE+
Sbjct: 502 TSVKSTKQSYLDPDKEVYCRYLAPRKVALTDAGVRKTKEDKTAYIFLPGGLGSMDEFFEL 561
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+QL+++GSE VP +++NYD FY LL F+ + GTV ++++ + ++N E
Sbjct: 562 YTLVQLKKLGSEHKVPIILVNYDGFYDCLLTFIKTMIEQGTVGENDI-TFITCLNTNDEV 620
Query: 180 LSYLAEFYDL 189
+ +L FY L
Sbjct: 621 VDFLKSFYSL 630
>gi|307105960|gb|EFN54207.1| hypothetical protein CHLNCDRAFT_24809 [Chlorella variabilis]
Length = 182
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A T GA+ AGKPVGG ++ +EAG T YLP ++ + CR+ S+RK L+D VR
Sbjct: 1 MEAATLGALSAGKPVGGIRIQREAG--TTVRTASYLPPDSQVFCRYLSSRKVALVDSGVR 58
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
DRTA + LPGG+GT+DE+FEIL L+QL+++GS+ PVP ++++YD FY LL FL
Sbjct: 59 MKESDRTAYLFLPGGLGTMDELFEILTLVQLKKLGSKYPVPVVLVDYDGFYGGLLQFLRA 118
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
C+ GTV E+ L + N+ L L +Y
Sbjct: 119 CDTNGTVGAQELKDLI-VAQDNAGVLDVLQNYY 150
>gi|357459927|ref|XP_003600245.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
gi|355489293|gb|AES70496.1| hypothetical protein MTR_3g055920 [Medicago truncatula]
Length = 181
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 68/79 (86%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
MG H HY+Q+ EL EIA LLD TTWSGAGPGLMDAVT+GA+ AGKPVGGFK+G+EAGE
Sbjct: 103 MGSSHSHYVQAQELAKEIANLLDSTTWSGAGPGLMDAVTQGALLAGKPVGGFKIGREAGE 162
Query: 61 WTASNFHPYLPLETYLTCR 79
WTASNFHPYLP E YLTCR
Sbjct: 163 WTASNFHPYLPSENYLTCR 181
>gi|224031883|gb|ACN35017.1| unknown [Zea mays]
gi|414871613|tpg|DAA50170.1| TPA: decarboxylase family protein [Zea mays]
Length = 212
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 66/80 (82%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HPH+LQ+ EL EIARLL CTTW+GAGPGLMDA +GA +A KPVGG K+ KEAGEWT
Sbjct: 121 PTHPHFLQTTELAREIARLLGCTTWTGAGPGLMDAAIQGAFEADKPVGGLKIAKEAGEWT 180
Query: 63 ASNFHPYLPLETYLTCRFFS 82
+S FHPYLP ETYLTCR+ +
Sbjct: 181 SSGFHPYLPPETYLTCRYLN 200
>gi|302844949|ref|XP_002954014.1| hypothetical protein VOLCADRAFT_47065 [Volvox carteri f.
nagariensis]
gi|300260826|gb|EFJ45043.1| hypothetical protein VOLCADRAFT_47065 [Volvox carteri f.
nagariensis]
Length = 157
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M ++G M+AG PVGG ++ +EAG YLP TC++ ARK L D R
Sbjct: 1 MRGASEGGMRAGVPVGGIRISREAGT-NVLTMEDYLPAGAAFTCKYLPARKVALTDAGAR 59
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
RTA + LPGG+GT+DE+F IL L+QL ++G+ LPVP +++N++ FY LL L +
Sbjct: 60 QRPDQRTAYLFLPGGLGTMDELFSILTLLQLGKLGTALPVPLVIVNWNGFYDGLLQLLRE 119
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191
+ G + EV + + +N E L YLA FY+L +
Sbjct: 120 FDQTGALKASEVRQVM-VARTNDEVLEYLASFYELPA 155
>gi|159463816|ref|XP_001690138.1| lysine decarboxylase-like protein [Chlamydomonas reinhardtii]
gi|158284126|gb|EDP09876.1| lysine decarboxylase-like protein [Chlamydomonas reinhardtii]
Length = 158
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M A ++G ++AG PVGG ++ +EAG YL + TC++ RK L D VR
Sbjct: 1 MRAASEGGLKAGVPVGGIRISREAGT-NVLTMEDYLSAGSAFTCKYMPTRKVALTDAGVR 59
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
RTA V LPGG+GT+DE+F IL L+QL ++GS LPVP L++N+D FY L+ L
Sbjct: 60 LLPEQRTAYVFLPGGLGTMDELFSILTLMQLGKLGSSLPVPLLIVNWDGFYDGLMSLLTA 119
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ G + EV + + ++N E L YLA+FY L
Sbjct: 120 FDQTGALHASEVRQVM-VANTNDEVLEYLAQFYQL 153
>gi|337287830|ref|YP_004627302.1| hypothetical protein TOPB45_0260 [Thermodesulfobacterium sp. OPB45]
gi|334901568|gb|AEH22374.1| Conserved hypothetical protein CHP00730 [Thermodesulfobacterium
geofontis OPF15]
Length = 227
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 25/187 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHP Y ++ ELG + + + +G GPG+M+A KGA +AG G+ VG
Sbjct: 60 PDHPDYKKAEELGKLLVKA-GFSVITGGGPGIMEAANKGAAEAG----GYSVGLNIRLPL 114
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY ++ L ++F RK + +V A V PGG GTLDEMFE+L L
Sbjct: 115 EQEPNPYANIK--LEFKYFFVRKVMMAKYSV--------AFVFFPGGFGTLDEMFEVLTL 164
Query: 123 IQLERIGSELPVPFLVMN---YDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
+Q ++I P+P ++++ +D YK ++DFL + KD L+KI D+ E
Sbjct: 165 VQTKKIK---PIPIVLIDRNFWDPLYKWMVDFL--IPNNKISPKD--IDLFKIVDTPEET 217
Query: 180 LSYLAEF 186
+ Y+ E+
Sbjct: 218 VDYIKEY 224
>gi|332662622|ref|YP_004445410.1| hypothetical protein [Haliscomenobacter hydrossis DSM 1100]
gi|332331436|gb|AEE48537.1| Conserved hypothetical protein CHP00730 [Haliscomenobacter
hydrossis DSM 1100]
Length = 240
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 22/179 (12%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH 67
Y ++ EL GE+A+L T +G GPG+M+A +GA K VGG VG FH
Sbjct: 58 YQKTRELAGELAKL-GFTIMTGGGPGIMEAANRGA----KDVGGRSVGCNI-RLPMEQFH 111
Query: 68 -PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
PYL + ++T R+F RK LI + A V +PGG GTLDE FE + LIQ +
Sbjct: 112 NPYL--DKWVTIRYFFVRKTLLIKYSY--------AFVIMPGGFGTLDEFFETITLIQTQ 161
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+I + P ++ + +++K+++D + +D+G ++ +++ L+ + D EA +Y+ +
Sbjct: 162 KIYN---FPIVIFD-KTYHKEIIDHIQVMKDYGAISPEDL-QLFLVTDDIHEAAAYIRD 215
>gi|327399479|ref|YP_004340348.1| hypothetical protein Hipma_1332 [Hippea maritima DSM 10411]
gi|327182108|gb|AEA34289.1| Conserved hypothetical protein CHP00730 [Hippea maritima DSM 10411]
Length = 223
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D +Y +++E+ A+ +G GPG+M+A KGA +GG VG
Sbjct: 53 DDFYYKKAYEIARRFAQE-GYAIITGGGPGIMEAANKGA----HDIGGVSVGLNIELPHE 107
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + L R+F RK + AV + V +PGG GT+DE+FE L LI
Sbjct: 108 QMLNPYVNIP--LDFRYFFTRKVTFMKYAV--------SFVVMPGGYGTMDELFESLVLI 157
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++IG PV V+ F+ K++D + D G ++K ++ SL+KI DS EA+SY+
Sbjct: 158 QTDKIG-RFPV---VLFGSEFWNKVVDLVSFLADRGYISKTDL-SLFKITDSVEEAVSYV 212
Query: 184 AE 185
+
Sbjct: 213 ID 214
>gi|313673813|ref|YP_004051924.1| hypothetical protein Calni_1857 [Calditerrivibrio nitroreducens DSM
19672]
gi|312940569|gb|ADR19761.1| Conserved hypothetical protein CHP00730 [Calditerrivibrio
nitroreducens DSM 19672]
Length = 224
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ++ +LG +AR T +G GPG+M+A +GA +AG G VG
Sbjct: 58 DHPDYKKARKLGQILARE-GITVLTGGGPGIMEAANRGASEAG----GMSVGLNIELPFE 112
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY + +T +F RK L+ A A V PGG GT+DE FE L LI
Sbjct: 113 QKPNPYA--KKVITFNYFFVRKVMLVKYA--------KAFVIFPGGFGTMDEFFEALTLI 162
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++I LP P ++++ F+ LLD++ D KD L K+ + E Y+
Sbjct: 163 QTKKI---LPFPLILVD-AKFWGGLLDWIKDQMLTNNFIKDTDLELIKVMEEPEEIAEYI 218
Query: 184 AEFYDL 189
F +
Sbjct: 219 KGFMKI 224
>gi|283780059|ref|YP_003370814.1| hypothetical protein Psta_2284 [Pirellula staleyi DSM 6068]
gi|283438512|gb|ADB16954.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length = 270
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 20/178 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HP+Y + E+G E+A L T +G GPG M+A +GA +AG G VG
Sbjct: 93 PGHPYYQLALEVGRELA-LAGFTVITGGGPGAMEAANRGAHEAG----GRSVGLNIKLPH 147
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY+ + + ++F RK L+ SC A + LPGG+GTLDE+FE L
Sbjct: 148 EQEPNPYV--DQTVEFQYFFIRKVMLMKY-----SC---AYIVLPGGLGTLDELFEAATL 197
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
IQ ++G P P +++ ++F+ + DFL + G A +E+ +I DS EA+
Sbjct: 198 IQCGKVG---PFPLVLLG-ETFWSGMRDFLFYMVEQGVFAPEEIG-FGRIVDSPKEAV 250
>gi|348170882|ref|ZP_08877776.1| lysine decarboxylase family protein [Saccharopolyspora spinosa NRRL
18395]
Length = 261
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 19/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP Y ELG +AR+ C +G GPG M+AV +GA +AG G +G
Sbjct: 90 EHPEYAVGVELGAALARI-GCAVITGGGPGAMEAVNRGASEAG----GLSIGLGIELPFE 144
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F RK I A A V LPGG GT+DE+FE L L+
Sbjct: 145 QGLNPWVDLG--VNFRYFFVRKTMFIKYA--------QAFVCLPGGFGTMDELFESLTLV 194
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ ++ PV V+ S+++ L D++ D D+ +L + D +A+S +
Sbjct: 195 QTKKV-TKFPV---VLFGKSYWQGLYDWIRDSMHGAGKIGDKDLALLHLTDDIDDAVSIV 250
Query: 184 AEFYD 188
E Y+
Sbjct: 251 QEAYE 255
>gi|261856278|ref|YP_003263561.1| hypothetical protein Hneap_1689 [Halothiobacillus neapolitanus c2]
gi|261836747|gb|ACX96514.1| conserved hypothetical protein [Halothiobacillus neapolitanus c2]
Length = 239
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHPHYL + E IARLL SG GPG+M+A KGA + G P G +
Sbjct: 56 PDHPHYLMTVE----IARLLSDGGFAVVSGGGPGIMEAANKGAKEGGAPSVGLNITLPHE 111
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ + +PY + L + F ARK + A +A V +PGG GTLDEM EI
Sbjct: 112 Q----HDNPYQDIS--LHFQHFFARKVMFVKYA--------SAYVVMPGGFGTLDEMAEI 157
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q G +P +++ +F+ LL+ F GT+ + ++ L +CD
Sbjct: 158 LTLVQ---TGKSRRIPIILVG-TAFWSGLLNWFKQTLLTEGTIGEGDM-DLMTVCDEPQT 212
Query: 179 ALSYLAEFY 187
+S + +FY
Sbjct: 213 VVSTIFDFY 221
>gi|300773287|ref|ZP_07083156.1| methionyl-tRNA formyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300759458|gb|EFK56285.1| methionyl-tRNA formyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 251
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y + ++ E++RL T +G GPG+M+A +GA AG P G +
Sbjct: 61 DHPYYALARKVSAEVSRL-GFTIMTGGGPGIMEAANRGARDAGGPSVGCNI------VLP 113
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
HP L+ Y+ +F RK L + ++ LPGG GTLDE+FE + LI
Sbjct: 114 HEQHPNPYLDKYINIEYFFVRKELLRKYSF--------GIITLPGGFGTLDELFETITLI 165
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +I P ++M + +++ + + + + GT++ D+ L D EA+ ++
Sbjct: 166 QTGKIKK---FPIVIMGLE-YHRHIQEHIAIMAEAGTISPDD-QELILFTDDIDEAIGHI 220
Query: 184 AEFYDLSSIDK 194
+ S I K
Sbjct: 221 RRHAEESRILK 231
>gi|85711443|ref|ZP_01042501.1| Predicted Rossmann fold nucleotide-binding protein [Idiomarina
baltica OS145]
gi|85694595|gb|EAQ32535.1| Predicted Rossmann fold nucleotide-binding protein [Idiomarina
baltica OS145]
Length = 296
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A +GA +AG G + ++ +PY+ E +F+ RK
Sbjct: 148 SGGGPGVMEAANRGATEAGGESIGLNIVLPKEQYP----NPYITPEFCFQFHYFAIRKMH 203
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+VALPGG GTLDE+FE L LIQ ++I PVP +++ F+ K
Sbjct: 204 FLMRA--------RALVALPGGYGTLDELFETLTLIQTKKID---PVPIVLIG-KGFWSK 251
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
L++F E+ G +A D+V L+ + ++ EA +++ Y+LS
Sbjct: 252 LINFDLLIEE-GLIAPDDV-KLFTLVNTAEEAWAHICRCYELS 292
>gi|434381881|ref|YP_006703664.1| putative Rossmann fold nucleotide-binding protein [Brachyspira
pilosicoli WesB]
gi|404430530|emb|CCG56576.1| putative Rossmann fold nucleotide-binding protein [Brachyspira
pilosicoli WesB]
Length = 219
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 27/190 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHPHY +L E A+LL + +G GPG+M+A KGA A G +
Sbjct: 51 PDHPHY----KLAYETAKLLTENKYDIITGGGPGIMEAGNKGAFDANGNSIGLCIELPFE 106
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ T +PY+ E + R+F ARK + A A+V PGG GT+DEMFE
Sbjct: 107 QKT----NPYVKEE--IKFRYFFARKVMFVKYA--------KALVVFPGGFGTMDEMFET 152
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + + +P +V + FY L++++ D + + KD++ ++ D E
Sbjct: 153 LTLVQTKVLNK---IPIIVFD-KKFYTGLMNWIEKDMINEKYIDKDDLNLMYH-TDDPKE 207
Query: 179 ALSYLAEFYD 188
LS + FY+
Sbjct: 208 VLSIINNFYN 217
>gi|410462977|ref|ZP_11316523.1| TIGR00730 family protein [Desulfovibrio magneticus str. Maddingley
MBC34]
gi|409983916|gb|EKO40259.1| TIGR00730 family protein [Desulfovibrio magneticus str. Maddingley
MBC34]
Length = 218
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 37/192 (19%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+GPD P Y ++ +L + + + +G GPGLM+A KGA + G G+ G
Sbjct: 49 IGPDEPLYAETSKLAHMLCQA-GYSVITGGGPGLMEAANKGAYECG--------GESVG- 98
Query: 61 WTASNFHPYLPLET----YLTCR----FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
H +LPLE +LT R +F RK I A+ A +A+PGG GT
Sbjct: 99 -----LHIHLPLEQQPNKFLTIRSDYRYFFIRKLMFIKYAM--------AYIAMPGGFGT 145
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWK 171
LDE+ E L LIQ RI P P + M +F+ L+D F G ++ G V+ +++ L+
Sbjct: 146 LDELSEALVLIQTRRIK---PFPIIFMG-KAFWGGLIDWFKGTLQERGFVSAEDM-ELFT 200
Query: 172 ICDSNSEALSYL 183
+ D+ EA++Y+
Sbjct: 201 VLDTPEEAVAYI 212
>gi|239906708|ref|YP_002953449.1| hypothetical protein DMR_20720 [Desulfovibrio magneticus RS-1]
gi|239796574|dbj|BAH75563.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 218
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 37/192 (19%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+GPD P Y ++ +L + + + +G GPGLM+A KGA + G G+ G
Sbjct: 49 IGPDEPLYAETAKLAHMLCQA-GYSVITGGGPGLMEAANKGAYECG--------GESVG- 98
Query: 61 WTASNFHPYLPLET----YLTCR----FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
H +LPLE +LT R +F RK I A+ A +A+PGG GT
Sbjct: 99 -----LHIHLPLEQQPNKFLTIRSDYRYFFIRKLMFIKYAM--------AYIAMPGGFGT 145
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWK 171
LDE+ E L LIQ RI P P + M +F+ L+D F G D G V+ +++ L+
Sbjct: 146 LDELSEALVLIQTRRIK---PFPIIFMG-KAFWGGLIDWFKGTVLDRGFVSAEDL-ELFT 200
Query: 172 ICDSNSEALSYL 183
+ D+ EA++Y+
Sbjct: 201 VLDTPEEAVAYI 212
>gi|82701701|ref|YP_411267.1| hypothetical protein Nmul_A0567 [Nitrosospira multiformis ATCC
25196]
gi|82409766|gb|ABB73875.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
25196]
Length = 242
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHP+Y EL +IAR L + SG GPG+M+A KGA P G +
Sbjct: 59 PDHPYY----ELTEQIARQLSDAGFSVISGGGPGIMEAANKGAYYGESPSIGLNIQLPHE 114
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ H + + T R F ARK+ + A TA V LPGG GTLDE+ E
Sbjct: 115 Q------HRNVYQDVSQTFRHFFARKYMFVKLA--------TAYVVLPGGFGTLDELMEA 160
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q G +P +++ D F++ +L++L + + E L ++ D +E
Sbjct: 161 LTLVQ---TGKTRRMPIILVRSD-FWRGMLEWLQNVLVAEGMIAPEDMDLIQVIDEPAEV 216
Query: 180 LSYLAEFYDLSSIDKRVHEVNLK 202
+ + ++Y+ + V E ++
Sbjct: 217 VDAIFKYYETRGFEPSVAEREIQ 239
>gi|300869877|ref|YP_003784748.1| putative Rossmann fold nucleotide-binding protein [Brachyspira
pilosicoli 95/1000]
gi|431807064|ref|YP_007233962.1| Rossmann fold nucleotide-binding protein [Brachyspira pilosicoli
P43/6/78]
gi|300687576|gb|ADK30247.1| predicted Rossmann fold nucleotide binding protein [Brachyspira
pilosicoli 95/1000]
gi|430780423|gb|AGA65707.1| putative Rossmann fold nucleotide-binding protein [Brachyspira
pilosicoli P43/6/78]
Length = 219
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 27/190 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHPHY +L E A+LL + +G GPG+M+A KGA A G +
Sbjct: 51 PDHPHY----KLAYETAKLLAENKYDIITGGGPGIMEAGNKGAFDANGNSIGLCIELPFE 106
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ T +PY+ E + R+F ARK + A A+V PGG GT+DEMFE
Sbjct: 107 QKT----NPYVKEE--IKFRYFFARKVMFVKYA--------KALVVFPGGFGTMDEMFET 152
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + + +P +V + FY L++++ D + + KD++ +L D E
Sbjct: 153 LTLVQTKVLNK---IPIIVFD-KKFYTGLMNWIEKDMINEKYIDKDDL-NLMHHTDDPKE 207
Query: 179 ALSYLAEFYD 188
LS + FY+
Sbjct: 208 VLSIINNFYN 217
>gi|94971433|ref|YP_593481.1| hypothetical protein Acid345_4407 [Candidatus Koribacter versatilis
Ellin345]
gi|94553483|gb|ABF43407.1| conserved hypothetical protein 730 [Candidatus Koribacter
versatilis Ellin345]
Length = 318
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYL 70
S +LGG R + T G GPG+M+A GA +AG G + + +PY+
Sbjct: 143 SKDLGGRRHRFVVTT---GGGPGIMEAANLGAHEAGAKTIGLNIRLPFEQMP----NPYI 195
Query: 71 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGS 130
E +F RK A A+V PGG GT DE+FEIL L Q E++
Sbjct: 196 TPELNFEFHYFFMRKLWFAYLA--------KALVIFPGGFGTFDELFEILTLAQTEKMAK 247
Query: 131 ELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++ F+V+ ++KK+++F D G +A D++ +L+K CD EA YL
Sbjct: 248 KI---FVVIYGTEYWKKVINFQAFV-DAGAIAPDDL-NLFKFCDDPQEAFEYL 295
>gi|317153501|ref|YP_004121549.1| hypothetical protein Daes_1791 [Desulfovibrio aespoeensis Aspo-2]
gi|316943752|gb|ADU62803.1| Conserved hypothetical protein CHP00730 [Desulfovibrio aespoeensis
Aspo-2]
Length = 219
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 35/191 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+HP Y Q+ EL + + +G GPGLM+A KGA ++G G+ G
Sbjct: 52 PEHPLYKQT-ELLSMMLSQAGFSVITGGGPGLMEAGNKGAFESG--------GQSIG--- 99
Query: 63 ASNFHPYLPLETY------LTC--RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
H +LP+E + + C R+F RK I A+ A VALPGG GTLD
Sbjct: 100 ---LHIHLPMEQHNNTFMNIRCDFRYFFIRKLMFIKYAM--------AYVALPGGYGTLD 148
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
E+ E L LIQ RI P P ++M + F+ L+D+ D +E L+ + D
Sbjct: 149 ELAEALVLIQTHRIK---PFPIVLMGTE-FWSGLIDWFRDQMVSNKFCNEEDLDLFIVTD 204
Query: 175 SNSEALSYLAE 185
EA++Y+ +
Sbjct: 205 DAKEAVTYIKK 215
>gi|56461506|ref|YP_156787.1| Rossmann fold nucleotide-binding protein [Idiomarina loihiensis
L2TR]
gi|56180516|gb|AAV83238.1| Predicted Rossmann fold nucleotide-binding protein [Idiomarina
loihiensis L2TR]
Length = 298
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 18/164 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A +GAM+AG G +G +PY+ E +F+ RK
Sbjct: 147 SGGGPGIMEAANRGAMEAG----GESIGLNIVLPHEQRPNPYITPEYCFQFHYFAIRKMH 202
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+VA PGG GTLDE+FE L L+Q ++ SE PVP +++ + F+++
Sbjct: 203 FLQRA--------RALVAFPGGFGTLDELFETLTLVQTKK--SE-PVPIVLVGSE-FWRR 250
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191
+DF E+ GT+A+ ++ L++I DS +A + YDL +
Sbjct: 251 AIDFDLLVEE-GTIAEYDL-DLFQIVDSAEDAWQAICHCYDLKN 292
>gi|30249440|ref|NP_841510.1| hypothetical protein NE1469 [Nitrosomonas europaea ATCC 19718]
gi|30138803|emb|CAD85380.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 239
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHPHY +L IAR L + SG GPG+M+A KGA P G +
Sbjct: 56 PDHPHY----KLTEAIARQLSDAGFSVISGGGPGIMEAANKGAFYGKSPSVGLNIQLPHE 111
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ H + + T R F ARK+ I A TA V +PGG GTLDE+ E
Sbjct: 112 Q------HRNVYQDISQTFRHFFARKYMFIKFA--------TAYVVMPGGFGTLDELMEA 157
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q G +P +++ D F+ ++D+ E L +I D S+
Sbjct: 158 LTLVQ---TGKTRKMPIILVCSD-FWTGVIDWFRQVLVQHDFISSEDMDLIQIVDEPSQV 213
Query: 180 LSYLAEFYDLSSIDKRVHEVNLK 202
+ + +Y+ S + E N++
Sbjct: 214 VDAIFRYYETSGFEPSAAERNIQ 236
>gi|429123560|ref|ZP_19184093.1| Rossmann fold nucleotide-binding protein [Brachyspira hampsonii
30446]
gi|426280522|gb|EKV57535.1| Rossmann fold nucleotide-binding protein [Brachyspira hampsonii
30446]
Length = 223
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHPHY +L E A+LL + +G GPG+M+A +GA + G + +
Sbjct: 54 DHPHY----KLAYETAKLLGENKYDIITGGGPGIMEAGNRGAFDSNAGSIGLCIELPFEQ 109
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T +PY+ E L R+F ARK + A AV+ PGG GT+DEMFE L
Sbjct: 110 KT----NPYVKEE--LKFRYFFARKVMFLKYA--------KAVIIFPGGFGTMDEMFETL 155
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ + +P +VMNY S+Y L++++ E +L K ++ E L
Sbjct: 156 TLIQTRVLAR---MPLIVMNY-SYYTDLIEWIKKYMIGENYIDLEDLNLIKYAETPQETL 211
Query: 181 SYLAEFYD 188
+ FY
Sbjct: 212 DIINSFYQ 219
>gi|297624724|ref|YP_003706158.1| hypothetical protein [Truepera radiovictrix DSM 17093]
gi|297165904|gb|ADI15615.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093]
Length = 234
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 23/157 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
+GP+HP+Y Q+ LG ++AR T +G GPG+M+A KGA +A GK VG + E
Sbjct: 56 LGPEHPYYRQAESLGRDLARA-GYTVITGGGPGIMEAGNKGAFEAQGKSVGLNIDLPFEQ 114
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G +PY E L R+F RK L+ + +A V PGG GT+DE+FE
Sbjct: 115 GP------NPYQTTE--LKFRYFFVRKVMLVKYS--------SAFVVFPGGFGTIDELFE 158
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
L L+Q +I P P ++ S+++ L D+L D
Sbjct: 159 ALTLVQTRKIH---PFPVYLVGV-SYWQGLTDWLRDT 191
>gi|264677510|ref|YP_003277416.1| hypothetical protein CtCNB1_1374 [Comamonas testosteroni CNB-2]
gi|262208022|gb|ACY32120.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 25/171 (14%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH--PYLPLETYLT 77
R CT G GPG+M+A +GA AG P G + + H PY+
Sbjct: 139 RFYICT---GGGPGIMEAANRGAHDAGAPNVGLNI------YLPHEQHGNPYITPGLSFK 189
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F+ RK + A A+VA PGG GT+DE+FE+L L+Q + PVP +
Sbjct: 190 FHYFALRKMHFMMRA--------KALVAFPGGFGTMDELFEVLTLVQTHK---SKPVPVI 238
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+ + F+K++L+F E+ AKD +L++ D +EA S++ +FY
Sbjct: 239 LFGTE-FWKRVLNFDVLVEEGTISAKD--LNLFRYTDDPAEAWSFIQQFYQ 286
>gi|418531404|ref|ZP_13097318.1| hypothetical protein CTATCC11996_16980 [Comamonas testosteroni ATCC
11996]
gi|371451358|gb|EHN64396.1| hypothetical protein CTATCC11996_16980 [Comamonas testosteroni ATCC
11996]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 25/171 (14%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH--PYLPLETYLT 77
R CT G GPG+M+A +GA AG P G + + H PY+
Sbjct: 139 RFYICT---GGGPGIMEAANRGAHDAGAPNVGLNI------YLPHEQHGNPYITPGLSFK 189
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F+ RK + A A+VA PGG GT+DE+FE+L L+Q + PVP +
Sbjct: 190 FHYFALRKMHFMMRA--------KALVAFPGGFGTMDELFEVLTLVQTHK---SKPVPVI 238
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+ + F+K++L+F E+ AKD +L++ D +EA S++ +FY
Sbjct: 239 LFGTE-FWKRVLNFDVLVEEGTISAKD--LNLFRYTDDPAEAWSFIQQFYQ 286
>gi|299529117|ref|ZP_07042565.1| hypothetical protein CTS44_00092 [Comamonas testosteroni S44]
gi|298722873|gb|EFI63782.1| hypothetical protein CTS44_00092 [Comamonas testosteroni S44]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 25/171 (14%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH--PYLPLETYLT 77
R CT G GPG+M+A +GA AG P G + + H PY+
Sbjct: 139 RFYICT---GGGPGIMEAANRGAHDAGAPNVGLNI------YLPHEQHGNPYITPGLSFK 189
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F+ RK + A A+VA PGG GT+DE+FE+L L+Q + PVP +
Sbjct: 190 FHYFALRKMHFMMRA--------KALVAFPGGFGTMDELFEVLTLVQTHK---SKPVPVI 238
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+ + F+K++L+F E+ AKD +L++ D +EA S++ +FY
Sbjct: 239 LFGTE-FWKRVLNFDVLVEEGTISAKD--LNLFRYTDDPAEAWSFIQQFYQ 286
>gi|221068287|ref|ZP_03544392.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
gi|220713310|gb|EED68678.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
Length = 292
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 25/171 (14%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH--PYLPLETYLT 77
R CT G GPG+M+A +GA AG P G + + H PY+
Sbjct: 139 RFYICT---GGGPGIMEAANRGAHDAGAPNVGLNI------YLPHEQHGNPYITPGLSFK 189
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F+ RK + A A+VA PGG GT+DE+FE+L L+Q + PVP +
Sbjct: 190 FHYFALRKMHFMMRA--------KALVAFPGGFGTMDELFEVLTLVQTHK---SKPVPVI 238
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+ + F+K++L+F E+ AKD +L++ D +EA S++ +FY
Sbjct: 239 LFGTE-FWKRVLNFDVLVEEGTISAKD--LNLFRYTDDPAEAWSFIQQFYQ 286
>gi|77164080|ref|YP_342605.1| hypothetical protein Noc_0555 [Nitrosococcus oceani ATCC 19707]
gi|254435327|ref|ZP_05048834.1| conserved hypothetical protein TIGR00730 [Nitrosococcus oceani
AFC27]
gi|76882394|gb|ABA57075.1| Conserved hypothetical protein 730 [Nitrosococcus oceani ATCC
19707]
gi|207088438|gb|EDZ65710.1| conserved hypothetical protein TIGR00730 [Nitrosococcus oceani
AFC27]
Length = 241
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 31/204 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
M P+HP+Y +L +IAR L + SG GPGLM+A KGA P G +
Sbjct: 56 MAPEHPYY----QLTEKIARALSDAGFSVVSGGGPGLMEAANKGAFTGISPSVGLNISLP 111
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+E G A+ + + + R F +RK + A +A V LPGG GTLDE
Sbjct: 112 REPG---ANEYQ-----DIAVNFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDE 155
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICD 174
+ EIL L+Q G +P +++ SF+ L+D+ + + G + + ++ L+KI D
Sbjct: 156 LAEILTLVQ---TGKSRRIPIILVQ-SSFWAGLIDWFKEYLVEEGMIDRHDL-DLFKILD 210
Query: 175 SNSEALSYLAEFYDLSSIDKRVHE 198
E + + FY+ S + E
Sbjct: 211 KPQEVVDAIFSFYESRSFEPSAEE 234
>gi|430762991|ref|YP_007218848.1| DNA processing protein A [Thioalkalivibrio nitratireducens DSM
14787]
gi|430012615|gb|AGA35367.1| DNA processing protein A [Thioalkalivibrio nitratireducens DSM
14787]
Length = 250
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 27/200 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P HP YL L EIAR L + + SG GPG+M+A KGA P G + +
Sbjct: 67 PGHPDYL----LAEEIARQLSDSGFAVVSGGGPGIMEAANKGAFAGKSPSIGLNI-QLPH 121
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E A+ + + L R F ARK + A +A V LPGG GTLDE+ EI
Sbjct: 122 EQQANPYQ-----DIGLGFRHFFARKVMFVKYA--------SAYVVLPGGFGTLDELAEI 168
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q G +P +++ +F++ LLD F GT++ ++A L+ + D+
Sbjct: 169 LTLVQ---TGKSRRIPIVLVG-TTFWRGLLDWFEQTLVARGTISTGDLA-LYSLVDTPEA 223
Query: 179 ALSYLAEFYDLSSIDKRVHE 198
A++ + E+Y+ S + E
Sbjct: 224 AVNAIFEYYEARSFEPSAEE 243
>gi|120611957|ref|YP_971635.1| hypothetical protein Aave_3301 [Acidovorax citrulli AAC00-1]
gi|120590421|gb|ABM33861.1| conserved hypothetical protein 730 [Acidovorax citrulli AAC00-1]
Length = 301
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+ CT G GPG+M+A +GA +AG G + + P L + +
Sbjct: 153 RIYICT---GGGPGIMEAANRGAHEAGALNVGLNIALPHEQSGNRYISPSLSFKFH---- 205
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q G PVP ++
Sbjct: 206 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQ---TGKARPVPIVLF 254
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ F+KKL++F E GT++ D++ +L++ D EA ++ FY L
Sbjct: 255 GTE-FWKKLVNFDALVEQ-GTISADDL-NLFRHTDDPEEAWGFIKAFYKL 301
>gi|344201541|ref|YP_004786684.1| hypothetical protein [Muricauda ruestringensis DSM 13258]
gi|343953463|gb|AEM69262.1| Conserved hypothetical protein CHP00730 [Muricauda ruestringensis
DSM 13258]
Length = 255
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P++P+Y+Q+ ++G +A L T +G GPG+M+A KGA +AG G+ VG
Sbjct: 60 PENPYYVQAEQVGAALANL-GFTVMTGGGPGIMEAANKGAFEAG----GYSVGCNIILPF 114
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PYL T++ +F RK L+ + A V +PGG+GTLDE+FE L L
Sbjct: 115 EQKPNPYL--HTWINIPYFFVRKFLLMKYSY--------AFVVMPGGIGTLDELFEALTL 164
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQ + I + PV +Y S + + E G+ + L + DS E + +
Sbjct: 165 IQTKMI-QDFPVVIFGSDYHSELCNHIQLMAANESIGSADME----LLFVTDSIEEMMEH 219
Query: 183 L 183
+
Sbjct: 220 I 220
>gi|350560185|ref|ZP_08929025.1| Conserved hypothetical protein CHP00730 [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349782453|gb|EGZ36736.1| Conserved hypothetical protein CHP00730 [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 250
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 27/200 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P HP YL L EIAR L + + SG GPG+M+A KGA P G + +
Sbjct: 67 PGHPDYL----LAEEIARQLSDSGFAVVSGGGPGIMEAANKGAFAGKSPSIGLNI-QLPH 121
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E A+ + + L R F ARK + A +A V LPGG GTLDE+ EI
Sbjct: 122 EQQANPYQ-----DIGLGFRHFFARKVMFVKYA--------SAYVVLPGGFGTLDELAEI 168
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q G +P +++ +F++ LLD F GT++ ++A L+ + D+
Sbjct: 169 LTLVQ---TGKSRRIPIVLVG-TAFWRGLLDWFEQTLVPRGTISTGDLA-LYSLVDTPEA 223
Query: 179 ALSYLAEFYDLSSIDKRVHE 198
A++ + E+Y+ S + E
Sbjct: 224 AVNAIFEYYEARSFEPSAEE 243
>gi|404476195|ref|YP_006707626.1| Rossmann fold nucleotide-binding protein [Brachyspira pilosicoli
B2904]
gi|404437684|gb|AFR70878.1| putative Rossmann fold nucleotide-binding protein [Brachyspira
pilosicoli B2904]
Length = 219
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 27/190 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHPHY +L E A+LL + +G GPG+M+A KGA A G +
Sbjct: 51 PDHPHY----KLAYETAKLLAENKYDIITGGGPGIMEAGNKGAFDANGNSIGLCIELPFE 106
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ T +PY+ + + R+F ARK + A A+V PGG GT+DEMFE
Sbjct: 107 QKT----NPYV--KEKIKFRYFFARKVMFVKYA--------KALVVFPGGFGTMDEMFET 152
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + + +P +V + FY L++++ D + + KD++ +L D E
Sbjct: 153 LTLVQTKVLNK---IPIIVFD-KKFYTGLMNWIEKDMINEKYIDKDDL-NLMHHTDDPKE 207
Query: 179 ALSYLAEFYD 188
LS + FY+
Sbjct: 208 VLSIINNFYN 217
>gi|227536871|ref|ZP_03966920.1| possible Rossmann fold nucleotide-binding protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|227243298|gb|EEI93313.1| possible Rossmann fold nucleotide-binding protein [Sphingobacterium
spiritivorum ATCC 33300]
Length = 248
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y + ++ E+++L T +G GPG+M+A +GA AG P G +
Sbjct: 58 DHPYYALARKVSAEVSKL-GFTIMTGGGPGIMEAANRGARDAGGPSVGCNI------VLP 110
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
HP L+ Y+ +F RK L + ++ LPGG GTLDE+FE + LI
Sbjct: 111 HEQHPNPYLDKYINIEYFFVRKELLRKYSF--------GIITLPGGFGTLDELFETITLI 162
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +I P ++M + +++ + + + GT++ D+ L D EA+ ++
Sbjct: 163 QTGKIKK---FPIVIMGLE-YHRNIQEHIATMALAGTISPDD-QELILFTDDIDEAIGHI 217
Query: 184 AEFYDLSSIDK 194
+ S I K
Sbjct: 218 RRHAEESRILK 228
>gi|445062927|ref|ZP_21375217.1| Rossmann fold nucleotide-binding protein [Brachyspira hampsonii
30599]
gi|444505690|gb|ELV06162.1| Rossmann fold nucleotide-binding protein [Brachyspira hampsonii
30599]
Length = 221
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHPHY +L E A+LL + +G GPG+M+A +GA + G + +
Sbjct: 52 DHPHY----KLAYETAKLLGENKYDIITGGGPGIMEAGNRGAFDSNAGSIGLCIELPFEQ 107
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T +PY+ E L R+F ARK + A AV+ PGG GT+DEMFE L
Sbjct: 108 KT----NPYVKEE--LKFRYFFARKVMFLKYA--------KAVIIFPGGFGTMDEMFETL 153
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ + +P +VMNY S+Y L++++ E +L K ++ E L
Sbjct: 154 TLIQTRVLDR---MPLIVMNY-SYYTDLIEWIKKYMIGENYIDLEDLNLIKYAETPQETL 209
Query: 181 SYLAEFYD 188
+ FY
Sbjct: 210 DIINSFYQ 217
>gi|399155111|ref|ZP_10755178.1| hypothetical protein gproSAA_04747 [gamma proteobacterium SCGC
AAA007-O20]
Length = 200
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 20/180 (11%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
P Y +++ELG ++ ++GAGPG+M+A +KGA + G + ++T
Sbjct: 37 PLYQKAYELGKALSDA-GYNVFTGAGPGIMEATSKGAYEGKSKSIGLNIDLPREQYT--- 92
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
+PYL + +T +F +RK L+ A +A V PGG GT DE+ E+L L+Q
Sbjct: 93 -NPYL--DEVITFEYFFSRKVMLVKNA--------SACVCFPGGYGTADELMEVLTLLQT 141
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+++ P+P L++ SF+K LL + D G V ++ + L K+ D+ E +S + E
Sbjct: 142 QKMK---PIP-LILYGSSFWKPLLLWFETLVDKGYVNREHL-ELIKVVDTIDETVSIVKE 196
>gi|383934985|ref|ZP_09988424.1| predicted Rossmann fold nucleotide-binding protein [Rheinheimera
nanhaiensis E407-8]
gi|383704116|dbj|GAB58515.1| predicted Rossmann fold nucleotide-binding protein [Rheinheimera
nanhaiensis E407-8]
Length = 293
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 23 DC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRF 80
DC T SG GPG+M+A +GAM AG G +G +PY+ + +
Sbjct: 141 DCAMTIISGGGPGIMEAANRGAMDAG----GQSIGLNIVLPREQQPNPYITPQFCFQFHY 196
Query: 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140
F+ RK + A A+VA PGG GTLDE+FE L LIQ ++ +PV ++
Sbjct: 197 FAIRKMHFLQRA--------RALVAFPGGFGTLDELFETLTLIQTKK-SERVPV---ILY 244
Query: 141 YDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191
+F+++L++F E+ G + D+VA L + D+ +A + +FY L +
Sbjct: 245 DKAFWQRLINFDMLVEE-GLIGTDDVA-LIQYADTPEQAWQLILDFYQLPA 293
>gi|375109084|ref|ZP_09755338.1| Rossmann fold nucleotide-binding protein [Alishewanella jeotgali
KCTC 22429]
gi|374571270|gb|EHR42399.1| Rossmann fold nucleotide-binding protein [Alishewanella jeotgali
KCTC 22429]
Length = 293
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 103/212 (48%), Gaps = 45/212 (21%)
Query: 3 PDHP---HYLQSFE----------LGGEIARLL--------DC--TTWSGAGPGLMDAVT 39
PD+P H LQ E E ARL+ DC T SG GPG+M+A
Sbjct: 100 PDNPAAIHALQQAERDLKNSRYYTAAQEFARLVTQHSCQHPDCALTIISGGGPGIMEAAN 159
Query: 40 KGAMQA-GKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDS 97
+GAM+A GK +G + KE + +PY+ E +F+ RK + A
Sbjct: 160 RGAMEANGKSIGLNIVLPKE------QHPNPYITPEFCFQFHYFAIRKMHFLQRA----- 208
Query: 98 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED 157
A+VA PGG GTLDE+FE L LIQ R +PV ++ +F+++L++F E+
Sbjct: 209 ---RALVAFPGGFGTLDELFETLTLIQ-TRKAERVPV---ILYDKAFWQRLINFEMLAEE 261
Query: 158 WGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
G ++ ++ L + DS +A + +FY L
Sbjct: 262 -GLISPQDL-ELIQYVDSPEQAWQVIYDFYQL 291
>gi|300113292|ref|YP_003759867.1| hypothetical protein Nwat_0588 [Nitrosococcus watsonii C-113]
gi|299539229|gb|ADJ27546.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
Length = 241
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
M P+HP+Y +L EIAR+L + SG GPGLM+A KGA P G +
Sbjct: 56 MVPEHPYY----QLTEEIARVLSDAGFSIVSGGGPGLMEAANKGAFTGVSPSVGLNISL- 110
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E +A+ + + + R F +RK + A +A V LPGG GTLDE+
Sbjct: 111 PHEQSANEYQ-----DIAVNFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELA 157
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
EIL L+Q G +P +++ + SF+ L+D+ + + G + ++ L+K+ D
Sbjct: 158 EILTLVQ---TGKSRRIP-IILVHSSFWAGLIDWFKEYLVEEGMIDHHDL-DLFKVLDKP 212
Query: 177 SEALSYLAEFYD 188
E + + FY+
Sbjct: 213 QEVVDAIFSFYE 224
>gi|114330790|ref|YP_747012.1| hypothetical protein Neut_0777 [Nitrosomonas eutropha C91]
gi|114307804|gb|ABI59047.1| conserved hypothetical protein 730 [Nitrosomonas eutropha C91]
Length = 239
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 25/203 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHPHY +L IAR L + SG GPG+M+A KGA P G + +
Sbjct: 56 PDHPHY----KLTEAIARQLSDAGFSVISGGGPGIMEAANKGAFYGKSPSVGLNI--QLP 109
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
N + + T R F ARK+ I A TA V +PGG GTLDE+ E
Sbjct: 110 HEQRRNVYQ----DISQTFRHFFARKYMFIKFA--------TAYVVMPGGFGTLDELMEA 157
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q G +P +++ D F++ ++D+ E L +I D ++
Sbjct: 158 LTLVQ---TGKTRKMPIILVCSD-FWQGIIDWFRQVLVQDNFISPEDMDLIQIVDEPAQV 213
Query: 180 LSYLAEFYDLSSIDKRVHEVNLK 202
+ + +Y+ S + E N++
Sbjct: 214 VDAIFRYYETSGFEPSATERNIQ 236
>gi|339482761|ref|YP_004694547.1| hypothetical protein Nit79A3_1313 [Nitrosomonas sp. Is79A3]
gi|338804906|gb|AEJ01148.1| Conserved hypothetical protein CHP00730 [Nitrosomonas sp. Is79A3]
Length = 239
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 25/203 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD PHY +L +IA+ L + SG GPG+M+A KGA P G +
Sbjct: 56 PDSPHY----KLAEQIAKQLSDAGFSVISGGGPGIMEAANKGAYFGKSPSIGLNIQLPHE 111
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ H + T R F ARK+ + A TA V LPGG GTLDE+ E
Sbjct: 112 Q------HRNAYQDISQTFRHFFARKYMFVKFA--------TAYVVLPGGFGTLDELMEA 157
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q G +P +++ Y F++ LLD+ E +L +I D S+
Sbjct: 158 LTLVQ---TGKTRKMP-IILVYSEFWRGLLDWFQKTLIAEGFISAEDMNLIQIIDEPSQV 213
Query: 180 LSYLAEFYDLSSIDKRVHEVNLK 202
++ + ++Y+ S + E ++
Sbjct: 214 VNAIFQYYETSGFEPTAAEREIQ 236
>gi|220933278|ref|YP_002512177.1| hypothetical protein Tgr7_0086 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219994588|gb|ACL71190.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 241
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD+P Y +L EIAR L + SG GPG+M+A KGA P G +
Sbjct: 56 IQPDNPIY----KLAEEIARELSDAGFAVVSGGGPGIMEAANKGAFGGKSPSIGLNIAL- 110
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E TA+++ + L R F +RK + A +A V LPGG GTLDE+
Sbjct: 111 PHEQTANDYQ-----DISLGFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELA 157
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSN 176
EIL L+Q G +P +++ + +F+K LLD+ D GT+ + ++ L+ + D
Sbjct: 158 EILTLVQ---TGKTRRIP-IILVHSAFWKGLLDWFEDTLVAQGTIDESDL-KLYTLVDEP 212
Query: 177 SEALSYLAEFYD 188
S+A++ + ++Y+
Sbjct: 213 SDAVNAIFDYYE 224
>gi|338213225|ref|YP_004657280.1| hypothetical protein [Runella slithyformis DSM 19594]
gi|336307046|gb|AEI50148.1| Conserved hypothetical protein CHP00730 [Runella slithyformis DSM
19594]
Length = 249
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 19/177 (10%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+Y Q+ E+G IA L T +G GPG+M+A +GA ++ GG VG +
Sbjct: 68 YYEQAREVGKRIAMELGLTLMTGGGPGIMEAANRGAFES----GGRSVGCNIQLPFEQHE 123
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PY ++ ++ ++F RK L+ + A V +PGGVGT+DE FE L LIQ
Sbjct: 124 NPY--MQKWVKIKYFFVRKVLLVKYSY--------AFVIMPGGVGTMDEFFETLTLIQTG 173
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
I + P +V+ +Y ++ L D GT++ ++ L K D EA+ ++
Sbjct: 174 VIQN---FPLVVIG-KEYYTPMISMLQKMADQGTISPKDM-DLLKFTDDIDEAIEHI 225
>gi|289207232|ref|YP_003459298.1| hypothetical protein TK90_0045 [Thioalkalivibrio sp. K90mix]
gi|288942863|gb|ADC70562.1| conserved hypothetical protein [Thioalkalivibrio sp. K90mix]
Length = 241
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 27/200 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P HPHY +LG E+AR L + SG GPG+M+A KGA P G + +
Sbjct: 58 PGHPHY----QLGEEVARQLSDAGFAVVSGGGPGIMEAANKGAFAGRSPSIGLNI-QLPH 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E +A+ + + L R F +RK + A +A V LPGG GTLDE+ EI
Sbjct: 113 EQSANPYQ-----DISLGFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELAEI 159
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSE 178
L L+Q G +P +++ + F+K LL + D GT+ +++ L+ + D+ +
Sbjct: 160 LTLVQ---TGKTRRIPIVLVGSE-FWKGLLHWFDDTLVSEGTIDAEDL-KLYSLVDAPED 214
Query: 179 ALSYLAEFYDLSSIDKRVHE 198
+ + E Y+ S + E
Sbjct: 215 VVDVIFEHYEARSFEPSAEE 234
>gi|134097616|ref|YP_001103277.1| lysine decarboxylase [Saccharopolyspora erythraea NRRL 2338]
gi|291010016|ref|ZP_06567989.1| lysine decarboxylase family protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133910239|emb|CAM00352.1| lysine decarboxylase family protein [Saccharopolyspora erythraea
NRRL 2338]
Length = 261
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP Y ELG +A + C +G GPG M+AV +GA +AG G +G
Sbjct: 90 EHPEYAAGMELGAALA-AIGCAVITGGGPGTMEAVNRGASEAG----GLSIGLGIELPFE 144
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F ARK I A A + LPGG GT+DE+FE L L+
Sbjct: 145 QGLNPWVDLG--VNFRYFFARKTMFIKYA--------QAFICLPGGFGTMDELFESLTLV 194
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSY 182
Q +++ ++ PV V+ S+++ L D++ D G + + E+ L + D +A+S
Sbjct: 195 QTKKV-TKFPV---VLFGKSYWQGLYDWVRDSMLATGKIGEKEMGLL-HLTDDIDDAVSI 249
Query: 183 LAEFYD 188
+ E Y
Sbjct: 250 VEEAYQ 255
>gi|319762250|ref|YP_004126187.1| hypothetical protein Alide_1540 [Alicycliphilus denitrificans BC]
gi|330825823|ref|YP_004389126.1| hypothetical protein Alide2_3269 [Alicycliphilus denitrificans
K601]
gi|317116811|gb|ADU99299.1| Conserved hypothetical protein CHP00730 [Alicycliphilus
denitrificans BC]
gi|329311195|gb|AEB85610.1| Conserved hypothetical protein CHP00730 [Alicycliphilus
denitrificans K601]
Length = 287
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA +AG P G + + P L + +
Sbjct: 139 RLYVCT---GGGPGIMEAANRGAYEAGAPTIGLNITLPHEQSGNRYITPALSFKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+V PGG GTLDE+FE+L L+Q G P P +V+
Sbjct: 192 YFALRKMHFMMRA--------KALVLFPGGFGTLDELFEVLTLVQ---TGKAKPAP-IVL 239
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+F+K+L++F E GTV+ +++ L+ D +EA + FY+L
Sbjct: 240 FGTAFWKRLINFEALVEQ-GTVSPEDL-KLFHYTDDPAEAWGIIRAFYEL 287
>gi|431930444|ref|YP_007243490.1| hypothetical protein Thimo_1055 [Thioflavicoccus mobilis 8321]
gi|431828747|gb|AGA89860.1| TIGR00730 family protein [Thioflavicoccus mobilis 8321]
Length = 298
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA VGG +G +PY+ E +F+
Sbjct: 148 DFVVVTGGGPGIMEAANRGAAD----VGGKSIGLSVVLPHEERPNPYVTPELSFQFHYFA 203
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+VA PGG GTLDE+FE L LIQ R+ PVP L+ +
Sbjct: 204 VRKMHFLMRA--------RALVAFPGGYGTLDELFETLTLIQTRRVD---PVPVLLFG-E 251
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+++++++DF D G + ++ L+ ++ EA + +A FY
Sbjct: 252 AYWRRIIDF-DALVDEGAIGPGDI-ELFSYVETAEEAWNRIAAFY 294
>gi|436835590|ref|YP_007320806.1| UPF0717 protein [Fibrella aestuarina BUZ 2]
gi|384067003|emb|CCH00213.1| UPF0717 protein [Fibrella aestuarina BUZ 2]
Length = 257
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 20/185 (10%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
G HP+Y + ++GG I + L T +G GPGLM+A +GA +AG G VG
Sbjct: 72 GEGHPYYELARQMGGRI-QALGFTVMTGGGPGLMEAANRGAYEAG----GRSVGCNIRLP 126
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PYL T +T FF RK L+ + A V +PGG GT+DE+FE L
Sbjct: 127 FEQLPNPYL--HTSVTIDFFFVRKVLLLKYSY--------AFVVMPGGWGTMDELFETLT 176
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q G P ++M D +Y+ LLD++ GT+++ ++ L + D +A +
Sbjct: 177 LVQ---TGVVHQFPVVLMGRD-YYQPLLDYMQQMIRAGTISETDL-KLVCLTDDVDQAQA 231
Query: 182 YLAEF 186
++ +
Sbjct: 232 HIQAY 236
>gi|375149209|ref|YP_005011650.1| hypothetical protein [Niastella koreensis GR20-10]
gi|361063255|gb|AEW02247.1| hypothetical protein Niako_6021 [Niastella koreensis GR20-10]
Length = 249
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 24/192 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y S E G IA + TT +G GPG+M+A +GA + G P G + + E A
Sbjct: 67 DHPYYDASREFGKRIAEI-GFTTMTGGGPGVMEAANRGAFENGGPSVGCNI-QLPFEQQA 124
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ + + +T F RK ++ + A + +PGG GT+DE FE L L+
Sbjct: 125 NKY-----MNKSITFEHFFVRKVLMVKYSY--------AFIIMPGGFGTMDEFFETLTLV 171
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL--- 180
Q + I ++ P+ V+ +Y L ++ GT+++D++ L + DS EA+
Sbjct: 172 QTKTI-TQFPI---VLFGKEYYSNLWNYAEFMALQGTISRDDM-KLVLLTDSIDEAMDHI 226
Query: 181 -SYLAEFYDLSS 191
+Y+++ Y + S
Sbjct: 227 RTYISQNYKVKS 238
>gi|124009465|ref|ZP_01694141.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123984914|gb|EAY24877.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 248
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 91/199 (45%), Gaps = 44/199 (22%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-----GFKVGK 56
PDHPHY + ++ ++ R +G GPG+M+A KGA Q GK VG F+ G
Sbjct: 71 PDHPHYKNAEKIAAKLVRH-GYGVITGGGPGIMEAGNKGAYEQGGKSVGLCINLPFEQGN 129
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
A Y+ + + +F RK + A V +PGG+GTLDE+
Sbjct: 130 NA----------YIDTDKVINFDYFFVRKVMFVKYA--------QGFVVMPGGMGTLDEL 171
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW--GTVAKD------EVAS 168
FE + LIQ ++IG F ++ +DS Y G DW TVA+ E
Sbjct: 172 FEAITLIQTKKIGK-----FPIILFDSSY------WGGLVDWLKSTVAQKAHNINIEDLD 220
Query: 169 LWKICDSNSEALSYLAEFY 187
L+ + D EA+ + EFY
Sbjct: 221 LFTLVDDVDEAVQAIDEFY 239
>gi|261416422|ref|YP_003250105.1| hypothetical protein Fisuc_2036 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791282|ref|YP_005822405.1| putative decarboxylase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372878|gb|ACX75623.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327991|gb|ADL27192.1| putative decarboxylase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 280
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + + +PY+ E L R+F RK+
Sbjct: 116 TGGGPGIMEAGNRGASDVGTPSIGLNIKLPFEQ----HCNPYIDDELNLQFRYFFVRKYW 171
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+V PGG GTLDE FE+L LIQ ++ ++PV V+ +F+KK
Sbjct: 172 FLRMA--------RALVIFPGGFGTLDEAFEMLTLIQTDKYAQQMPV---VIFDSNFWKK 220
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
L++ E G + +++ L+K CD+ EA ++
Sbjct: 221 ALNWEFFAET-GMINPEDL-KLFKFCDTVDEAYDFI 254
>gi|313206822|ref|YP_004045999.1| hypothetical protein Riean_1336 [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383486130|ref|YP_005395042.1| hypothetical protein RA0C_1612 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386321195|ref|YP_006017357.1| Rossmann fold nucleotide-binding protein [Riemerella anatipestifer
RA-GD]
gi|416109402|ref|ZP_11591361.1| hypothetical protein RAYM_00735 [Riemerella anatipestifer RA-YM]
gi|442313962|ref|YP_007355265.1| putative Rossmann fold nucleotide-binding protein [Riemerella
anatipestifer RA-CH-2]
gi|312446138|gb|ADQ82493.1| Conserved hypothetical protein CHP00730 [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315023895|gb|EFT36897.1| hypothetical protein RAYM_00735 [Riemerella anatipestifer RA-YM]
gi|325335738|gb|ADZ12012.1| Predicted Rossmann fold nucleotide-binding protein [Riemerella
anatipestifer RA-GD]
gi|380460815|gb|AFD56499.1| hypothetical protein RA0C_1612 [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|441482885|gb|AGC39571.1| putative Rossmann fold nucleotide-binding protein [Riemerella
anatipestifer RA-CH-2]
Length = 243
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 17/189 (8%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P+Y + ++ +I L +G GPG+M+A +GA ++ G +G
Sbjct: 68 DDPYYQMTVDIAKKITEL-GFGVITGGGPGIMEAGNRGAFESN----GKSIGLNIELPFE 122
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+F+PY+ + +T +F RK + + + +PGG GTLDE+ E L LI
Sbjct: 123 QHFNPYISKDYNMTFDYFFVRKVMFVKYS--------QGFIVMPGGFGTLDELSEALTLI 174
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +IG P+ V+ F+ LLD+ D + E +L+++ D+ EA++++
Sbjct: 175 QTRKIG-RFPI---VLVGSKFWSGLLDWFKDTLLENKLISPEDLNLFRMVDTAEEAVAHI 230
Query: 184 AEFYDLSSI 192
FY+ +I
Sbjct: 231 KAFYEKYAI 239
>gi|347754126|ref|YP_004861690.1| putative Rossmann fold nucleotide-binding protein [Candidatus
Chloracidobacterium thermophilum B]
gi|347586644|gb|AEP11174.1| putative Rossmann fold nucleotide-binding protein [Candidatus
Chloracidobacterium thermophilum B]
Length = 274
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 20/164 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R L C SG GPG+M+A +GA AG GF + ++ +PY+ E
Sbjct: 112 RFLVC---SGGGPGIMEAANRGAAIAGGKSVGFNISLPFEQYP----NPYISPELCFEFH 164
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK L+ A A+V PGG GTLDE+ E+L L+Q ++ +P+ V+
Sbjct: 165 YFFMRKFWLVYPA--------KALVIFPGGFGTLDELLEVLTLLQTRKLNRRMPI---VI 213
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
+++++++L+F WG ++ ++ + ++ +S EA YL
Sbjct: 214 YGEAYWREVLNFEALVR-WGMISSADL-NFFRYANSPEEAFVYL 255
>gi|294055881|ref|YP_003549539.1| hypothetical protein [Coraliomargarita akajimensis DSM 45221]
gi|293615214|gb|ADE55369.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
45221]
Length = 282
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 30/191 (15%)
Query: 6 PHYLQSFELGGEIAR----LLD-----CTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKV 54
P+Y + EL ++ R L D SG GPG+M A GA QAG K +G G +
Sbjct: 103 PYYTAASELAEKLTRWSMSLTDQEKHRFVVCSGGGPGIMQAANHGAHQAGGKSIGLGISL 162
Query: 55 GKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
E G + Y+P + +F RK+ + A A++A PGG GTLD
Sbjct: 163 PFEQG------VNDYIPDDLKFEFHYFFTRKYWFVHIA--------KALIAFPGGFGTLD 208
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
E+FE L LIQ + S VP +V+ F+K +++F E WGT++ +++ L D
Sbjct: 209 ELFETLTLIQTGKTPS---VPPIVLFGSEFWKNVVNFDTLVE-WGTISPEDL-DLIHFSD 263
Query: 175 SNSEALSYLAE 185
+A ++L E
Sbjct: 264 DVDDAFNFLVE 274
>gi|399032619|ref|ZP_10731968.1| TIGR00730 family protein [Flavobacterium sp. CF136]
gi|398068998|gb|EJL60379.1| TIGR00730 family protein [Flavobacterium sp. CF136]
Length = 242
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD +YL + ++ +I++ +G GPG+M+A KGA G G VG
Sbjct: 65 PDDKYYLLAEKIAYKISKA-GYGVITGGGPGIMEAGNKGAHLGG----GTSVGLNIELPF 119
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+F+PY+ + L +F RK + + V +PGG GTLDEMFE + L
Sbjct: 120 EQHFNPYIDHDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDEMFEAITL 171
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSEAL 180
IQ ++IG P +++ + F+ L++++ E TV+ D++ +L+KI D+ E +
Sbjct: 172 IQTKKIGK---FPIILVGVE-FWSGLIEWVKTVLVEKMHTVSPDDL-NLFKIVDTEDEVV 226
Query: 181 SYLAEFY 187
L +FY
Sbjct: 227 EVLDKFY 233
>gi|336119948|ref|YP_004574726.1| hypothetical protein MLP_43090 [Microlunatus phosphovorus NM-1]
gi|334687738|dbj|BAK37323.1| hypothetical protein MLP_43090 [Microlunatus phosphovorus NM-1]
Length = 253
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 25/184 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGE 60
PDH Y + ELG ++A+ T +G GPG+M+A KGA +AG + VG G ++ E G
Sbjct: 85 PDHWSYAAAVELGRQLAQS-GFTVITGGGPGIMEAANKGAAEAGGRSVGLGIELPFEQG- 142
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ L + R+F ARK + A V LPGG GT DE+FE L
Sbjct: 143 -----LNDYVNLG--INFRYFFARKTMFVKYA--------QGFVVLPGGFGTFDELFEAL 187
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEA 179
L+Q ++ S PV V+ +++ L+D++ D D+G +++ + A L ++ D EA
Sbjct: 188 TLVQTRKVTS-FPV---VLFGSHYWQGLVDWIRDSVLDYGCISEPD-AQLMQVTDDVDEA 242
Query: 180 LSYL 183
++ +
Sbjct: 243 VAIM 246
>gi|225848415|ref|YP_002728578.1| hypothetical protein SULAZ_0592 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644408|gb|ACN99458.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 223
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+Y + +LG ++A+ T +G GPG+M+A +GA +AG G +G
Sbjct: 52 YYDSARQLGFKLAKK-GFTIVTGGGPGIMEAANRGAFEAG----GNSIGLNIKLPKEQKP 106
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PYL L L +F ARK L+ A T V PGG GTLDE+FE L LIQ +
Sbjct: 107 NPYLTLT--LNFNYFFARKVMLVKYA--------TGFVLFPGGYGTLDEVFETLTLIQTK 156
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
++ P P + D ++ LL +L +E +++KI D+ E + Y+ F
Sbjct: 157 KLK---PFPVIFFGSD-YWDGLLQWLKSKVVANNYIDEEDLNIFKIMDNIDEVVDYIESF 212
Query: 187 Y 187
Y
Sbjct: 213 Y 213
>gi|407451329|ref|YP_006723053.1| Rossmann fold nucleotide-binding protein [Riemerella anatipestifer
RA-CH-1]
gi|403312313|gb|AFR35154.1| putative Rossmann fold nucleotide-binding protein [Riemerella
anatipestifer RA-CH-1]
Length = 242
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 17/189 (8%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ P+Y + ++ +I L +G GPG+M+A KGA +A G +G
Sbjct: 67 NDPYYQMTVDIAKKITEL-GFGVITGGGPGIMEAGNKGAFEAN----GKSIGLNIELPFE 121
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+F+PY+ + +T +F RK + + + +PGG GTLDE+ E L LI
Sbjct: 122 QHFNPYISKDYNITFDYFFVRKVMFVKYS--------QGFIVMPGGFGTLDELSEALTLI 173
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +IG P+ V+ F+ LLD+ + + E +L+++ D+ EA++++
Sbjct: 174 QTHKIG-RFPI---VLVGSKFWSGLLDWFKNTLLENKLISPEDLNLFRVVDTAEEAVAHI 229
Query: 184 AEFYDLSSI 192
FY+ +I
Sbjct: 230 KAFYEKYAI 238
>gi|85709357|ref|ZP_01040422.1| predicted Rossmann fold nucleotide-binding protein [Erythrobacter
sp. NAP1]
gi|85688067|gb|EAQ28071.1| predicted Rossmann fold nucleotide-binding protein [Erythrobacter
sp. NAP1]
Length = 290
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 20/165 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GP +M+A +GA AG G + + S PYL L + +F+ RK H
Sbjct: 145 TGGGPSIMEAGNRGASDAGGESIGLNIVLPHEQAPNSYVTPYLSLNFH----YFALRKMH 200
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE+FE+L LIQ G P+P ++ D F++
Sbjct: 201 FLLRA---------RAVAVFPGGFGTFDELFELLTLIQ---TGKMKPIPIMLFGKD-FWE 247
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191
+++DF E+ GT+AK ++ L+ C++ EA +++FY+L
Sbjct: 248 RVVDFEAIAEE-GTIAKSDL-DLFSWCETAEEAWDCVSKFYELEQ 290
>gi|373459894|ref|ZP_09551661.1| Conserved hypothetical protein CHP00730 [Caldithrix abyssi DSM
13497]
gi|371721558|gb|EHO43329.1| Conserved hypothetical protein CHP00730 [Caldithrix abyssi DSM
13497]
Length = 286
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 10 QSFELGGEIARLLDCTTW--------------SGAGPGLMDAVTKGAMQAGKPVGGFKVG 55
+ +E E+ARLL T W +G GPG+M+A KGA AG G +G
Sbjct: 96 KYYEDATELARLL--TEWAIEKGNGKQALYVCTGGGPGIMEAANKGAYLAG----GKSIG 149
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+PY+ E +F RK+ L+ + A++ PGG GTLDE
Sbjct: 150 LNISLPHEQEPNPYISEELGFEFHYFFMRKYWLVYLS--------KALIIFPGGFGTLDE 201
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+ E+L L+Q +I P+P +V D ++++++DF WGT+A +++ + +K +S
Sbjct: 202 LMEVLTLLQTGKIHR--PLPIVVFGQD-YWQEIIDFEAMAR-WGTIAFNDL-NFFKFVNS 256
Query: 176 NSEALSYLAE 185
E YL +
Sbjct: 257 AEEGFHYLKK 266
>gi|443245504|ref|YP_007378729.1| putative lysine decarboxylase [Nonlabens dokdonensis DSW-6]
gi|442802903|gb|AGC78708.1| putative lysine decarboxylase [Nonlabens dokdonensis DSW-6]
Length = 229
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ P++ +Y + E+ G+I +G GPG+M+A KGA AG G VG
Sbjct: 50 LKPENEYYKLATEIAGKIVEN-GYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNITL 104
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY+ + L +F ARK + + V +PGG GTLDE+FE +
Sbjct: 105 PFEQHDNPYIDSDKSLDFDYFFARKVMFVKYS--------QGFVVMPGGFGTLDELFEAI 156
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED--WGTVAKDEVASLWKICDSNSE 178
LIQ +IG P +++ D F+ LLD++ + D + T++ +++ L + D++ E
Sbjct: 157 TLIQTNKIGK---FPIILVGTD-FWSGLLDWVKNTLDKKFFTISPEDI-DLLHVVDTSDE 211
Query: 179 ALSYLAEFY 187
A++ + EFY
Sbjct: 212 AVNIINEFY 220
>gi|146302237|ref|YP_001196828.1| hypothetical protein Fjoh_4510 [Flavobacterium johnsoniae UW101]
gi|146156655|gb|ABQ07509.1| conserved hypothetical protein 730 [Flavobacterium johnsoniae
UW101]
Length = 242
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD +YL + ++ +I++ +G GPG+M+A KGA G G VG
Sbjct: 65 PDDKYYLLAEKIAYKISKA-GYGVITGGGPGIMEAGNKGAHMGG----GTSVGLNIELPF 119
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+F+PY+ + L +F RK + + V +PGG GTLDEMFE + L
Sbjct: 120 EQHFNPYIDHDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDEMFEAITL 171
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSEAL 180
IQ ++IG P +++ + F+ L++++ E TV+ +++ +L+KI D+ E +
Sbjct: 172 IQTKKIGK---FPIILVGVE-FWSGLIEWVKTVLVEKMHTVSSEDL-NLFKIVDTEDEVV 226
Query: 181 SYLAEFY 187
L +FY
Sbjct: 227 DVLDKFY 233
>gi|85374879|ref|YP_458941.1| hypothetical protein ELI_10260 [Erythrobacter litoralis HTCC2594]
gi|84787962|gb|ABC64144.1| hypothetical protein ELI_10260 [Erythrobacter litoralis HTCC2594]
Length = 299
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA AG G + + + PYL + + +F+ RK H
Sbjct: 154 SGGGPSIMEAANRGASDAGAESIGLNIVLPHEQAPNTYVTPYLSFQFH----YFALRKMH 209
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ G P+P L+ D F+
Sbjct: 210 FLLRA---------KAVAVFPGGFGTFDEFFELLTLIQ---TGKMKPMPILLFGKD-FWT 256
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ GT++K ++ L C++ EA ++A+FYD+
Sbjct: 257 RVVNFEAIAEE-GTISKQDL-DLITWCETADEAWGHIADFYDI 297
>gi|319792633|ref|YP_004154273.1| hypothetical protein Varpa_1953 [Variovorax paradoxus EPS]
gi|315595096|gb|ADU36162.1| Conserved hypothetical protein CHP00730 [Variovorax paradoxus EPS]
Length = 287
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GPG+M A +GA + G G VG +PY+
Sbjct: 139 KLFVCT---GGGPGIMQAANRGAHEGG----GISVGLAIALPMEEEANPYVTPALSFKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE++ L+Q ++ PVP ++
Sbjct: 192 YFAIRKMHFMMRA--------KALVAFPGGFGTLDELFEVITLVQTKK---SKPVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+++DF D G ++ +V L++ D+ +A Y+ FY L
Sbjct: 241 GSD-YWKRMIDF-DFLVDEGVISPGDV-KLFEYVDAPEDAWDYIKRFYKL 287
>gi|397171686|ref|ZP_10495085.1| Rossmann fold nucleotide-binding protein [Alishewanella aestuarii
B11]
gi|396086694|gb|EJI84305.1| Rossmann fold nucleotide-binding protein [Alishewanella aestuarii
B11]
Length = 293
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 22/167 (13%)
Query: 25 TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
T SG GPG+M+A +GAM A GK +G + KE + +PY+ E +F+
Sbjct: 145 TIISGGGPGIMEAANRGAMDANGKSIGLNIVLPKE------QHPNPYITPEFCFQFHYFA 198
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+VA PGG GTLDE+FE L LIQ R +PV ++
Sbjct: 199 IRKMHFLQRA--------RALVAFPGGFGTLDELFETLTLIQ-TRKAERVPV---ILYDK 246
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+F+++L++F E+ G ++ ++ L + DS +A + +FY L
Sbjct: 247 AFWQRLINFEMLAEE-GLISPQDL-ELIQYVDSPEQAWQVIYDFYQL 291
>gi|407788143|ref|ZP_11135278.1| hypothetical protein B30_18882 [Celeribacter baekdonensis B30]
gi|407198161|gb|EKE68202.1| hypothetical protein B30_18882 [Celeribacter baekdonensis B30]
Length = 296
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 20/166 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA G G V + + +P++ + R+F+
Sbjct: 130 DFVIVTGGGPGVMEAANRGAFDVGARSAGLNVTLPSEQRP----NPFITPDLAFRFRYFA 185
Query: 83 ARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141
RK H L+ A+VA PGG GTLDE+FE+L L+Q ++ S LP+ ++
Sbjct: 186 IRKMHFLLRA---------KALVAFPGGYGTLDELFEVLTLVQTRKMQS-LPI---ILFG 232
Query: 142 DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F+ + +DF D G ++ + A L++ ++ +A+S L +FY
Sbjct: 233 REFWNRAIDF-DFLVDEGMISSQDRA-LFRFVETAEQAVSVLKDFY 276
>gi|121594828|ref|YP_986724.1| hypothetical protein Ajs_2487 [Acidovorax sp. JS42]
gi|120606908|gb|ABM42648.1| conserved hypothetical protein 730 [Acidovorax sp. JS42]
Length = 287
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA AG G + + P L + +
Sbjct: 139 RLYICT---GGGPGIMEAANRGAHDAGALNVGLNISLPHEQSGNRFISPSLSFKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+V PGG GTLDE+FE+L L+Q G PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVLFPGGFGTLDELFEVLTLVQ---TGKAKPVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+F+KKL++F E GT++ +++ L+ D +EA S + FY+L
Sbjct: 241 GV-AFWKKLINFEALVEQ-GTISPEDL-QLFHYTDDPAEAWSIIRTFYEL 287
>gi|222110573|ref|YP_002552837.1| hypothetical protein Dtpsy_1373 [Acidovorax ebreus TPSY]
gi|221730017|gb|ACM32837.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
Length = 287
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA AG G + + P L + +
Sbjct: 139 RLYICT---GGGPGIMEAANRGAHDAGALNVGLNISLPHEQSGNRFISPSLSFKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+V PGG GTLDE+FE+L L+Q G PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVLFPGGFGTLDELFEVLTLVQ---TGKAKPVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+F+KKL++F E GT++ +++ L+ D +EA S + FY+L
Sbjct: 241 GV-AFWKKLINFEALVEQ-GTISPEDL-QLFHYTDDPAEAWSIIRTFYEL 287
>gi|225621363|ref|YP_002722621.1| Rossmann fold nucleotide-binding protein [Brachyspira
hyodysenteriae WA1]
gi|225216183|gb|ACN84917.1| predicted Rossmann fold nucleotide-binding protein [Brachyspira
hyodysenteriae WA1]
Length = 221
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHPHY +L E A+LL + +G GPG+M+A +GA A G + +
Sbjct: 52 DHPHY----KLAYETAKLLGENKYDIITGGGPGIMEAGNRGAFDANAGSIGLCIELPFEQ 107
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T +PY+ E L R+F ARK + A AV+ PGG GT+DEMFE L
Sbjct: 108 KT----NPYVKEE--LKFRYFFARKVMFLKYA--------KAVIIFPGGFGTMDEMFETL 153
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ + + +P +VMN S+Y L++++ E +L K ++ AL
Sbjct: 154 TLIQTKVLDR---MPLIVMN-SSYYTDLIEWIKKDMIKENYIDPEDLNLIKYAETPQAAL 209
Query: 181 SYLAEFY 187
+ F+
Sbjct: 210 DIINSFH 216
>gi|384208177|ref|YP_005593897.1| Rossmann fold nucleotide-binding protein [Brachyspira intermedia
PWS/A]
gi|343385827|gb|AEM21317.1| predicted Rossmann fold nucleotide-binding protein [Brachyspira
intermedia PWS/A]
Length = 221
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHPHY +L E A+LL + +G GPG+M+A +GA A G + +
Sbjct: 52 DHPHY----KLAYETAKLLGENKYDIITGGGPGIMEAGNRGAFDANAGSIGLCIELPFEQ 107
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T +PY+ E L R+F ARK + A AV+ PGG GT+DEMFE L
Sbjct: 108 KT----NPYVKEE--LKFRYFFARKVMFLKYA--------KAVIIFPGGFGTMDEMFETL 153
Query: 121 ALIQ---LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
LIQ LER+ P +VMN S+Y L++++ E +L K ++
Sbjct: 154 TLIQTKVLERM------PLIVMN-SSYYTDLIEWIKKDMIKENYIDVEDLNLIKYAETPQ 206
Query: 178 EALSYLAEFYD 188
AL + F+
Sbjct: 207 AALDIINSFHQ 217
>gi|407710635|ref|YP_006794499.1| decarboxylase family protein [Burkholderia phenoliruptrix BR3459a]
gi|407239318|gb|AFT89516.1| decarboxylase family protein [Burkholderia phenoliruptrix BR3459a]
Length = 335
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 24/187 (12%)
Query: 7 HYLQSFELGGEIAR------LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + ELG + R L T +G GPG+M+A +GA G P G + +
Sbjct: 137 YYSIARELGRTVGRARCSAALSSLATVTGGGPGIMEAANRGAHGVGAPSIGLNIALPREQ 196
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PYL E +F+ RK L++ A A V PGG GT DE+FE+L
Sbjct: 197 QP----NPYLTPELCFRFHYFAIRKLHLLERA--------QAAVFFPGGFGTCDELFEVL 244
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P+P +++ +SF+++ +DF + G +A +++A L+ C++ E
Sbjct: 245 TLLQTSKI---RPLPVVLVG-ESFWRRAIDFDFLISE-GMIAPEDMA-LFSFCETAPEIW 298
Query: 181 SYLAEFY 187
+ +A ++
Sbjct: 299 ATVARWH 305
>gi|398808679|ref|ZP_10567539.1| TIGR00730 family protein [Variovorax sp. CF313]
gi|398087031|gb|EJL77629.1| TIGR00730 family protein [Variovorax sp. CF313]
Length = 287
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GPG+M A +GA + G G VG +PY+
Sbjct: 139 KLFVCT---GGGPGIMQAANRGAHEGG----GLSVGLAIALPMEEEANPYVTPALSFKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE++ L+Q ++ PVP ++
Sbjct: 192 YFAIRKMHFMMRA--------KALVAFPGGFGTLDELFEVITLVQTKK---SKPVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L+DF D G ++ +V L++ D+ +A S + FY L
Sbjct: 241 GSD-YWKRLIDF-DFLVDEGVISPGDV-KLFEYVDAPEDAWSAIKRFYKL 287
>gi|392390439|ref|YP_006427042.1| hypothetical protein Ornrh_1057 [Ornithobacterium rhinotracheale
DSM 15997]
gi|390521517|gb|AFL97248.1| TIGR00730 family protein [Ornithobacterium rhinotracheale DSM
15997]
Length = 235
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 22/171 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK 85
+G GPG+M+A KGA Q G K VG G ++ EAG + Y+ + +F RK
Sbjct: 83 TGGGPGIMEAANKGAKQGGGKSVGLGIELPFEAGN------NKYIDPKLSHQFDYFFVRK 136
Query: 86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145
L+ A + LPGG GTLDE+FE + LIQ ++IGS P+ V+ ++
Sbjct: 137 VLLVKYA--------QGFIVLPGGFGTLDELFEAMTLIQTDKIGS-FPI---VLVGKKYW 184
Query: 146 KKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKR 195
L+D+ + + G +++D++ L+++ D+ EA+ ++ +FYD ++ +
Sbjct: 185 GGLIDWFKNVLIEEGKISEDDL-KLFRLVDTAEEAVEHIKKFYDKYAVKQN 234
>gi|393759236|ref|ZP_10348052.1| lysine decarboxylase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393162464|gb|EJC62522.1| lysine decarboxylase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 222
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HP+Y + ELG +A T +G GPGLM+A KGA +AG G + T
Sbjct: 46 PGHPYYELAQELGRRLAEA-GVTLIAGGGPGLMEAANKGAYEAGGQSVGLNI--RLPHET 102
Query: 63 ASNFHPYLPLETY-LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+N P +T+ L +F +RK A +ALPGG GTLDE+FE++
Sbjct: 103 TNN-----PYQTHSLQFEYFYSRKATFF--------MHSWAYIALPGGFGTLDELFEVMT 149
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ P P +++ SF+ L++++GD + G + ++ +L + D E +
Sbjct: 150 LVQTGKVP---PAPIVLIG-TSFWSGLIEWIGDQLMELGLIGPKDL-NLLVLTDDLDEVM 204
Query: 181 SYLAE 185
Y+ +
Sbjct: 205 GYINQ 209
>gi|393764472|ref|ZP_10353082.1| Rossmann fold nucleotide-binding protein [Alishewanella agri BL06]
gi|392604601|gb|EIW87502.1| Rossmann fold nucleotide-binding protein [Alishewanella agri BL06]
Length = 293
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 22/167 (13%)
Query: 25 TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
T SG GPG+M+A +GAM A GK +G + KE + +PY+ E +F+
Sbjct: 145 TIISGGGPGIMEAANRGAMDANGKSIGLNIVLPKE------QHPNPYITPEFCFQFHYFA 198
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+VA PGG GTLDE+FE L LIQ ++ +PV ++
Sbjct: 199 IRKMHFLQRA--------RALVAFPGGFGTLDELFETLTLIQTKK-AERVPV---ILYDK 246
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+F+++L++F E+ G ++ ++ L + DS +A + +FY L
Sbjct: 247 AFWQRLINFEMLAEE-GLISPQDL-ELIQYVDSPEQAWQVIYDFYQL 291
>gi|323529802|ref|YP_004231954.1| hypothetical protein BC1001_5517 [Burkholderia sp. CCGE1001]
gi|323386804|gb|ADX58894.1| Conserved hypothetical protein CHP00730 [Burkholderia sp. CCGE1001]
Length = 335
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 24/187 (12%)
Query: 7 HYLQSFELGGEIAR------LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + ELG + R L T +G GPG+M+A +GA G P G + +
Sbjct: 137 YYSIARELGRTVGRARCSAALSSLATVTGGGPGIMEAANRGAHGVGAPSIGLNIALPREQ 196
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PYL E +F+ RK L++ A A V PGG GT DE+FE+L
Sbjct: 197 QP----NPYLTPELCFRFHYFAIRKLHLLERA--------QAAVFFPGGFGTCDELFEVL 244
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P+P +++ +SF+++ +DF + G +A +++A L+ C++ E
Sbjct: 245 TLLQTSKIR---PLPVVLVG-ESFWRRAIDFDFLISE-GMIAPEDMA-LFSFCETAPEIW 298
Query: 181 SYLAEFY 187
+ +A ++
Sbjct: 299 ATVARWH 305
>gi|407715461|ref|YP_006836741.1| Lysine decarboxylase family protein [Cycloclasticus sp. P1]
gi|407255797|gb|AFT66238.1| Lysine decarboxylase family protein [Cycloclasticus sp. P1]
Length = 225
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 19/188 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ DHP Y ++ + ++ + SG GPG+M+A KGA + G + +
Sbjct: 40 LNEDHPDYQRAEAISLALSNA-GFSVISGGGPGIMEAANKGAFKGPSSSIGLNILLPHEQ 98
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY + L R F ARK + A TA V LPGG GTLDE+ EIL
Sbjct: 99 QS----NPYQ--DVSLNFRHFFARKVMFVKYA--------TAYVVLPGGYGTLDELAEIL 144
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q G +P +++N + F+ L+D+ + K E L+++C++ E L
Sbjct: 145 TLVQ---TGKTRKIPIILVNKE-FWNGLIDWFSNTLVATGTLKKEDLDLFQLCETPDEVL 200
Query: 181 SYLAEFYD 188
+ + +FY+
Sbjct: 201 TAIFDFYE 208
>gi|89891599|ref|ZP_01203103.1| putative lysine decarboxylase [Flavobacteria bacterium BBFL7]
gi|89516146|gb|EAS18809.1| putative lysine decarboxylase [Flavobacteria bacterium BBFL7]
Length = 239
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ PD+ +Y + E+ G+I +G GPG+M+A KGA G G VG
Sbjct: 60 LKPDNKYYQLATEIAGKIVDN-GYGVITGGGPGIMEAGNKGAHLNG----GTSVGLNIAL 114
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY+ + L +F ARK + + V +PGG GTLDE+FE +
Sbjct: 115 PFEQHDNPYIDHDKSLDFDYFFARKVMFVKYS--------QGFVVMPGGFGTLDELFEAI 166
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED--WGTVAKDEVASLWKICDSNSE 178
LIQ +IG P +++ D F+ LLD++ D + T++ +++ L + D++ E
Sbjct: 167 TLIQTNKIGK---FPIILVGSD-FWSGLLDWIKGTLDKKFFTISPEDI-DLLHVVDTSDE 221
Query: 179 ALSYLAEFY 187
A++ + EFY
Sbjct: 222 AVAIINEFY 230
>gi|433602692|ref|YP_007035061.1| hypothetical protein BN6_08590 [Saccharothrix espanaensis DSM
44229]
gi|407880545|emb|CCH28188.1| hypothetical protein BN6_08590 [Saccharothrix espanaensis DSM
44229]
Length = 256
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 19/184 (10%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
G DHP Y +LGG +A +G GPG M+AV +G +AG GF VG
Sbjct: 83 GRDHPEYETGRKLGGALAEA-GFAVITGGGPGAMEAVNRGCSEAG----GFSVGLGIELP 137
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+P++ L + R+F RK I + A + LPGG GTLDE+FE L
Sbjct: 138 FEQGLNPWVDLG--VNFRYFFVRKTMFIKYS--------QAFICLPGGFGTLDELFEALT 187
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ ++ PV V+ S+++ L D++ D G D+ L + D +A+
Sbjct: 188 LVQTKKV-TKFPV---VLFGKSYWQGLYDWVKDSVMAGGKVGDKDLGLLHLTDDIDDAVR 243
Query: 182 YLAE 185
+ E
Sbjct: 244 VVQE 247
>gi|291287249|ref|YP_003504065.1| hypothetical protein Dacet_1337 [Denitrovibrio acetiphilus DSM
12809]
gi|290884409|gb|ADD68109.1| conserved hypothetical protein [Denitrovibrio acetiphilus DSM
12809]
Length = 229
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y + E+G ++A T +G GPG+M+A +GA + G G VG
Sbjct: 57 DDPQYQLAREIGAKLAAE-GITVLTGGGPGIMEAANRGAHEQG----GLSVGLNIELPYE 111
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + +T +F RK L+ A A + LPGG GT+DE+FE + LI
Sbjct: 112 QRPNPYV--KKSITFDYFFVRKVMLVKYA--------NAFIILPGGFGTMDELFEAITLI 161
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSY 182
Q +I LP P +++ D ++ L+D++ + G + K ++ L ++ D+ E LS
Sbjct: 162 QTGKI---LPFPTILVGKD-YWCGLVDWIKNRMLGSGYINKSDMNFL-QVVDTADEVLSI 216
Query: 183 LAEFYDLSSIDKR 195
+ EF + SS R
Sbjct: 217 IKEFLETSSRAAR 229
>gi|436842541|ref|YP_007326919.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432171447|emb|CCO24820.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 218
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P YLQ+ L ARLL + +S G GPGLM+A KG + E GE
Sbjct: 52 DDPLYLQTENL----ARLLTKSGYSVITGGGPGLMEAANKGCYE------------ENGE 95
Query: 61 WTASNFHPYLPLET----YLTCR----FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
+ H +LP E YLT + +F RK I A+ A +A+PGG GT
Sbjct: 96 --SIGLHIHLPFEQHTNHYLTVQSDYNYFFIRKVMFIKYAL--------AYIAMPGGYGT 145
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI 172
LDE+ E L LIQ +RI P P ++M + F+ L+D+ D +E +L+ +
Sbjct: 146 LDELSEALVLIQTKRIK---PFPIILMGTE-FWDGLIDWFKDRLVANGYCDEENLNLFHV 201
Query: 173 CDSNSEALSYLAE 185
DS EA++++ +
Sbjct: 202 TDSPEEAVAHIKK 214
>gi|374375043|ref|ZP_09632701.1| Conserved hypothetical protein CHP00730 [Niabella soli DSM 19437]
gi|373231883|gb|EHP51678.1| Conserved hypothetical protein CHP00730 [Niabella soli DSM 19437]
Length = 249
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 20/183 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DH +Y ++ G IA L TT +G GPG+M+A KGA +A GG VG
Sbjct: 67 DHIYYKKAEAFGRRIADL-GFTTLTGGGPGIMEAANKGAFEA----GGESVGCNIKLPFE 121
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+++ YL +T F RK L+ + A + +PGG GT+DE FE + LI
Sbjct: 122 QHYNKYLT--DAVTFDHFFVRKVLLVKYSY--------AFIIMPGGFGTMDEFFETITLI 171
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q + I ++ P+ V+ FYK+L+ + + GT++K+++ +L + D EA+ ++
Sbjct: 172 QTKTI-TQFPI---VLFGKEFYKELMITIEGMAEQGTISKEDM-NLVLLTDDVDEAMEHI 226
Query: 184 AEF 186
++
Sbjct: 227 RQY 229
>gi|149186417|ref|ZP_01864730.1| hypothetical protein ED21_23048 [Erythrobacter sp. SD-21]
gi|148830006|gb|EDL48444.1| hypothetical protein ED21_23048 [Erythrobacter sp. SD-21]
Length = 294
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA AG G + + PYL L + +F+ RK H
Sbjct: 151 SGGGPSIMEAANRGASDAGGESIGLNIILPHEQAPNQYVTPYLSLNFH----YFALRKMH 206
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ G P+P L+ D F+
Sbjct: 207 FLLRA---------KAVAVFPGGFGTFDEFFELLTLIQ---TGKMKPMPILLFGKD-FWT 253
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ GT++K ++ L++ C++ EA +++ FY+L
Sbjct: 254 RVVNFEAIAEE-GTISKKDL-DLFRWCETADEAWDHISAFYEL 294
>gi|406889615|gb|EKD35757.1| hypothetical protein ACD_75C01790G0003 [uncultured bacterium]
Length = 227
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 27/186 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG---E 60
DH HYL + ++ G +A + +G GPG+M+A KGA +AG G +G E
Sbjct: 61 DHKHYLLAEKIAGGLANV-GYAVITGGGPGIMEAANKGADEAG----GLSIGMNINLPHE 115
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ ++F + L ++F RK + + + V +PGG G+LDE+FE +
Sbjct: 116 QSPNDFTNFP-----LNFKYFFVRKVMFMKYS--------SGFVCMPGGFGSLDELFEAM 162
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEA 179
LIQ ERI P P +++ + F+ L+D++ D G + D++ L+K+ D E
Sbjct: 163 TLIQTERIK---PFPIVLVGSE-FWTGLVDWIKDKLLSEGNIHADDLL-LFKVLDDADEV 217
Query: 180 LSYLAE 185
+ YL E
Sbjct: 218 VQYLQE 223
>gi|375290618|ref|YP_005125158.1| hypothetical protein CD241_0891 [Corynebacterium diphtheriae 241]
gi|376245451|ref|YP_005135690.1| hypothetical protein CDHC01_0891 [Corynebacterium diphtheriae HC01]
gi|371580289|gb|AEX43956.1| hypothetical protein CD241_0891 [Corynebacterium diphtheriae 241]
gi|372108081|gb|AEX74142.1| hypothetical protein CDHC01_0891 [Corynebacterium diphtheriae HC01]
Length = 254
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 25/188 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
+ P+HP+Y Q LG + R +G GPGLM+A KGA A G VG G ++ E
Sbjct: 79 VAPNHPYYDQGVCLGEGLVRA-GYAVITGGGPGLMEAANKGAFDADGYSVGLGIELPHEQ 137
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 138 G------INDYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGMGTLDELFE 181
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNS 177
+L ++Q ++ + P+ V+ SF+ L+D++ G ++K+++ SL+ + DS
Sbjct: 182 VLCMVQTGKV-TNFPI---VLLGTSFWGGLVDWIKQRLVGEGMISKEDL-SLFLVTDSVD 236
Query: 178 EALSYLAE 185
EA+ ++ +
Sbjct: 237 EAVEFIRQ 244
>gi|376284485|ref|YP_005157695.1| hypothetical protein CD31A_0989 [Corynebacterium diphtheriae 31A]
gi|371578000|gb|AEX41668.1| hypothetical protein CD31A_0989 [Corynebacterium diphtheriae 31A]
Length = 254
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 23/187 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
+ P+HP+Y Q LG + R +G GPGLM+A KGA A G VG G ++ E
Sbjct: 79 VAPNHPYYDQGVCLGEGLVRA-GYAVITGGGPGLMEAANKGAFDADGYSVGLGIELPHEQ 137
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 138 G------INDYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGMGTLDELFE 181
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+L ++Q ++ + P+ V+ SF+ L+D++ + +E SL+ + DS E
Sbjct: 182 VLCMVQTGKV-TNFPI---VLLGTSFWGGLVDWIKQRLVGEGMISEEDLSLFLVTDSVDE 237
Query: 179 ALSYLAE 185
A+ ++ +
Sbjct: 238 AVEFIRQ 244
>gi|38233578|ref|NP_939345.1| hypothetical protein DIP0983 [Corynebacterium diphtheriae NCTC
13129]
gi|375292829|ref|YP_005127368.1| hypothetical protein CDB402_0859 [Corynebacterium diphtheriae INCA
402]
gi|376242577|ref|YP_005133429.1| hypothetical protein CDCE8392_0888 [Corynebacterium diphtheriae
CDCE 8392]
gi|376248264|ref|YP_005140208.1| hypothetical protein CDHC04_0897 [Corynebacterium diphtheriae HC04]
gi|376251055|ref|YP_005137936.1| hypothetical protein CDHC03_0887 [Corynebacterium diphtheriae HC03]
gi|376256872|ref|YP_005144763.1| hypothetical protein CDVA01_0854 [Corynebacterium diphtheriae VA01]
gi|376287478|ref|YP_005160044.1| hypothetical protein CDBH8_0952 [Corynebacterium diphtheriae BH8]
gi|376290099|ref|YP_005162346.1| hypothetical protein CDC7B_0896 [Corynebacterium diphtheriae C7
(beta)]
gi|376292999|ref|YP_005164673.1| hypothetical protein CDHC02_0890 [Corynebacterium diphtheriae HC02]
gi|419860559|ref|ZP_14383200.1| hypothetical protein W5M_04486 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38199838|emb|CAE49501.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
gi|371582500|gb|AEX46166.1| hypothetical protein CDB402_0859 [Corynebacterium diphtheriae INCA
402]
gi|371584812|gb|AEX48477.1| hypothetical protein CDBH8_0952 [Corynebacterium diphtheriae BH8]
gi|372103495|gb|AEX67092.1| hypothetical protein CDC7B_0896 [Corynebacterium diphtheriae C7
(beta)]
gi|372105819|gb|AEX71881.1| hypothetical protein CDCE8392_0888 [Corynebacterium diphtheriae
CDCE 8392]
gi|372110322|gb|AEX76382.1| hypothetical protein CDHC02_0890 [Corynebacterium diphtheriae HC02]
gi|372112559|gb|AEX78618.1| hypothetical protein CDHC03_0887 [Corynebacterium diphtheriae HC03]
gi|372114832|gb|AEX80890.1| hypothetical protein CDHC04_0897 [Corynebacterium diphtheriae HC04]
gi|372119389|gb|AEX83123.1| hypothetical protein CDVA01_0854 [Corynebacterium diphtheriae VA01]
gi|387982953|gb|EIK56452.1| hypothetical protein W5M_04486 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 254
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 23/187 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
+ P+HP+Y Q LG + R +G GPGLM+A KGA A G VG G ++ E
Sbjct: 79 VAPNHPYYDQGVCLGEGLVRA-GYAVITGGGPGLMEAANKGAFDADGYSVGLGIELPHEQ 137
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 138 G------INDYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGMGTLDELFE 181
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+L ++Q ++ + P+ V+ SF+ L+D++ + +E SL+ + DS E
Sbjct: 182 VLCMVQTGKV-TNFPI---VLLGTSFWGGLVDWIKQRLVGEGMISEEDLSLFLVTDSVDE 237
Query: 179 ALSYLAE 185
A+ ++ +
Sbjct: 238 AVEFIRQ 244
>gi|325981762|ref|YP_004294164.1| hypothetical protein NAL212_1092 [Nitrosomonas sp. AL212]
gi|325531281|gb|ADZ26002.1| Conserved hypothetical protein CHP00730 [Nitrosomonas sp. AL212]
Length = 241
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 27/204 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+ PHY +L +IA+ L SG GPG+M+A KGA P G + +
Sbjct: 58 PNSPHY----KLAEQIAKQLSDAGFAVISGGGPGIMEAANKGAYYGKSPSIGLNI-QLPH 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E + F + T R F ARK+ + A TA V LPGG GTLDE+ E
Sbjct: 113 EQHRNAFQ-----DISQTFRHFFARKYMFVKFA--------TAYVVLPGGFGTLDELMEA 159
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + ++P+ ++ Y F+ LLD F G ++ D++ +L ++ D +
Sbjct: 160 LTLVQTGKT-RKMPI---ILVYSEFWHGLLDWFQHALIAEGFISIDDM-NLIQVIDEPEQ 214
Query: 179 ALSYLAEFYDLSSIDKRVHEVNLK 202
+S + ++Y+ S + E ++
Sbjct: 215 VVSAIFQYYETSGFEPSAAEREIQ 238
>gi|241763682|ref|ZP_04761731.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
gi|241367071|gb|EER61445.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
Length = 287
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+ CT G GPG+M+A +GA +AG G +G + P L + +
Sbjct: 139 RIYICT---GGGPGIMEAANRGAHEAGALNVGLNIGLPHEQSGNRFISPSLSFKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q G PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQ---TGKAKPVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L++F E+ AKD L+ D +A + FY L
Sbjct: 241 GVD-YWKRLINFDVMVEEGTISAKD--LELFHFTDDPQKAWDLVKAFYKL 287
>gi|424776843|ref|ZP_18203818.1| lysine decarboxylase [Alcaligenes sp. HPC1271]
gi|422887883|gb|EKU30277.1| lysine decarboxylase [Alcaligenes sp. HPC1271]
Length = 222
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HP+Y + ELG +A T +G GPGLM+A KGA +AG G +G
Sbjct: 46 PGHPYYELAQELGRRLAEA-GVTLIAGGGPGLMEAANKGAYEAG----GQSIGLNIRLPH 100
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY L +F +RK A +ALPGG GTLDE+FE++ L
Sbjct: 101 ETTNNPYQ--TQSLQFEYFYSRKATFF--------MHSWAYIALPGGFGTLDELFEVMTL 150
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALS 181
+Q ++ P P +++ SF+ L++++GD + G + ++ +L + D E +
Sbjct: 151 VQTGKVP---PAPIVLIG-TSFWSGLIEWIGDQLMEMGLIGPKDL-NLLVLTDDLDEVMG 205
Query: 182 YLAE 185
Y+ +
Sbjct: 206 YINQ 209
>gi|376254049|ref|YP_005142508.1| hypothetical protein CDPW8_0947 [Corynebacterium diphtheriae PW8]
gi|372117133|gb|AEX69603.1| hypothetical protein CDPW8_0947 [Corynebacterium diphtheriae PW8]
Length = 254
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 23/187 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
+ P+HP+Y Q LG + R +G GPGLM+A KGA A G VG G ++ E
Sbjct: 79 VAPNHPYYDQGVCLGEGLVRA-GYAVITGGGPGLMEAANKGAFDADGYSVGLGIELPHEQ 137
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 138 G------INDYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGMGTLDELFE 181
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+L ++Q ++ + P+ V+ SF+ L+D++ + +E SL+ + DS E
Sbjct: 182 VLCMVQTGKV-TTFPI---VLLGTSFWGGLVDWIKQRLVGEGMISEEDLSLFLVTDSVDE 237
Query: 179 ALSYLAE 185
A+ ++ +
Sbjct: 238 AVEFIRQ 244
>gi|126733859|ref|ZP_01749606.1| decarboxylase family protein [Roseobacter sp. CCS2]
gi|126716725|gb|EBA13589.1| decarboxylase family protein [Roseobacter sp. CCS2]
Length = 281
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 23/174 (13%)
Query: 10 QSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
+S + GG D +G GPG+M+A +GA +AG G +G +PY
Sbjct: 115 KSMQTGG-----TDDVIVTGGGPGVMEAGNRGAEEAG----GRSIGLNIVLPHEQAPNPY 165
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ E +F+ RK + A +AV PGG GTLDEMFE L LIQ R+
Sbjct: 166 VTPELCFNFHYFAIRKMHFLMRA--------SAVCVFPGGFGTLDEMFEALTLIQTGRME 217
Query: 130 SELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
VPFL+ SF++K++++ D GT++ D++ L++ D+ EA+S L
Sbjct: 218 Q---VPFLLFG-KSFWEKIINWDA-LADAGTISADDL-KLFRFVDTAEEAISAL 265
>gi|395803848|ref|ZP_10483090.1| hypothetical protein FF52_18280 [Flavobacterium sp. F52]
gi|395433967|gb|EJF99918.1| hypothetical protein FF52_18280 [Flavobacterium sp. F52]
Length = 242
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD +Y + ++ +I++ +G GPG+M+A KGA G G VG
Sbjct: 65 PDDKYYQLAEKIAYKISKA-GYGVITGGGPGIMEAGNKGAHLGG----GTSVGLNIELPF 119
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+F+PY+ + L +F RK + + V +PGG GTLDEMFE + L
Sbjct: 120 EQHFNPYIDHDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDEMFEAITL 171
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSEAL 180
IQ ++IG P +++ + F+ L+D++ E TV+ +++ +L+KI D+ E +
Sbjct: 172 IQTKKIGK---FPIILVGVE-FWSGLIDWVKTVLVEKMHTVSPEDL-NLFKIVDTEDEVV 226
Query: 181 SYLAEFY 187
L +FY
Sbjct: 227 EALDKFY 233
>gi|161522931|ref|YP_001585860.1| hypothetical protein Bmul_5908 [Burkholderia multivorans ATCC
17616]
gi|189348238|ref|YP_001941434.1| Rossmann fold nucleotide-binding protein [Burkholderia multivorans
ATCC 17616]
gi|160346484|gb|ABX19568.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
gi|189338376|dbj|BAG47444.1| predicted Rossmann fold nucleotide-binding protein [Burkholderia
multivorans ATCC 17616]
Length = 342
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 24/187 (12%)
Query: 7 HYLQSFELGGEIARLLDCTTW------SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + E G +A CT +G GPG+M+A +GA + G P GF + E
Sbjct: 154 YYRVAREFGRIVAHADRCTRTARLAIVTGGGPGIMEAANRGAYERGAPSIGFNI--ELPR 211
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N PY+ + L +F+ RK L++ A A V PGG GT DE+FE+L
Sbjct: 212 QQAPN--PYITPDLCLRFHYFAIRKLHLLERA--------KAAVFFPGGYGTFDELFEVL 261
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P+P +++ ++++++ +D L D G + + ++ L+ C+S +
Sbjct: 262 TLLQTRKIA---PLPVILVG-EAYWRRAVD-LAFLADEGMIDRRDL-ELFTYCESAAAIW 315
Query: 181 SYLAEFY 187
+ +Y
Sbjct: 316 HAIGSWY 322
>gi|284036829|ref|YP_003386759.1| hypothetical protein Slin_1915 [Spirosoma linguale DSM 74]
gi|283816122|gb|ADB37960.1| conserved hypothetical protein [Spirosoma linguale DSM 74]
Length = 266
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 26/191 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGE 60
PD P+Y + E+ ++ R +G GPG+M+A KGA Q GK VG K+ E
Sbjct: 89 PDSPYYKMTEEIAAKLVRH-GYGVITGGGPGIMEAGNKGAFEQGGKSVGLNIKLPFEQ-- 145
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
SN Y+ + + FF RK + A V +PGG+GTLDE+FE L
Sbjct: 146 --HSNI--YIDPDKSINFDFFFVRKVMFVKYA--------QGFVVMPGGMGTLDELFEAL 193
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC---EDWGTVAKDEVASLWKICDSNS 177
LIQ +I + P+ V+ ++++ L+D++ D E +D L I D+ +
Sbjct: 194 TLIQTRKI-ARFPI---VLVGRTYWQGLIDWITDVMLGEQQNINPED--MKLISIVDTPT 247
Query: 178 EALSYLAEFYD 188
EA+ + EFY+
Sbjct: 248 EAVKVIDEFYN 258
>gi|224373651|ref|YP_002608023.1| hypothetical protein NAMH_1643 [Nautilia profundicola AmH]
gi|223589534|gb|ACM93270.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 222
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 30/195 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P H +Y E EI+R L + +G GPG+M+A KGA + +G
Sbjct: 52 PGHYYY----EKATEISRGLSDKGYAIITGGGPGIMEAANKGAKVS--------IGLNIE 99
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ +T L ++F RK + +V A V +PGG GTLDE+ E+
Sbjct: 100 LPHEQHINPYV--KTSLKFKYFFTRKVTFLKYSV--------ATVMMPGGFGTLDELSEV 149
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q +R+ S++P+ F FYK LLDF + ++ ++ L+ + D E
Sbjct: 150 LTLVQTKRM-SQIPIVFFG---SEFYKPLLDFYEKMLEMKYISPED-KKLYLVTDDVQEV 204
Query: 180 LSYLAEFYDLSSIDK 194
+ Y+++ ++ I K
Sbjct: 205 VDYISQNAPITEILK 219
>gi|86134019|ref|ZP_01052601.1| possible lysine decarboxylase [Polaribacter sp. MED152]
gi|85820882|gb|EAQ42029.1| possible lysine decarboxylase [Polaribacter sp. MED152]
Length = 235
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHP+Y + E+G ++ + +G GPG+M+A KGA + GK G VG
Sbjct: 59 PDHPYYKLAEEIGFQLTQA-GFGVITGGGPGIMEAGNKGANR-GK---GLSVGLNIELPF 113
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +P++ L +F RK + + V +PGG GT+DE+FE + L
Sbjct: 114 EQHDNPWIDPGKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTMDELFEAITL 165
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQ ++IG P+ V+ F+ LLD++ D E SL+++ D+ EA+ +
Sbjct: 166 IQTKKIG-RFPI---VLVGSKFWSGLLDWIKDTLITEKNIGLEDLSLFRVVDTAEEAVEH 221
Query: 183 LAEFY 187
+FY
Sbjct: 222 FNKFY 226
>gi|379730097|ref|YP_005322293.1| hypothetical protein SGRA_1978 [Saprospira grandis str. Lewin]
gi|378575708|gb|AFC24709.1| hypothetical protein SGRA_1978 [Saprospira grandis str. Lewin]
Length = 237
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 32/193 (16%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGK--E 57
PD+ +Y +L EIA+L+ + +G GPG+M+A GA QAG P G + E
Sbjct: 57 PDNRYY----KLATEIAKLMVNEGYGVITGGGPGIMEAANLGAKQAGGPSVGLNIDLPFE 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
G + Y+ + ++F RK + A A+V LPGG GT+DE+F
Sbjct: 113 QGH------NDYIDNDKIFNFKYFFIRKVMFVKYA--------QALVVLPGGFGTMDELF 158
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC---EDWGTVAKDEVASLWKICD 174
E+L L+Q ++ PVP +++ + F+ L D++ + ++ KD L I D
Sbjct: 159 EVLTLVQTQKSS---PVPIILVGSE-FWTGLKDWIKNVMLEQEHNVSPKD--LDLMPITD 212
Query: 175 SNSEALSYLAEFY 187
E + + EFY
Sbjct: 213 DPQEVVRIINEFY 225
>gi|117924281|ref|YP_864898.1| hypothetical protein Mmc1_0974 [Magnetococcus marinus MC-1]
gi|117608037|gb|ABK43492.1| conserved hypothetical protein 730 [Magnetococcus marinus MC-1]
Length = 229
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD+P Y + +L G ++ C +G GPG+M+A +G G G + +
Sbjct: 46 PDNPFYQAAEKLSGMLSSKGICII-TGGGPGIMEAANRGCYGRGGLSVGLNISLPFEQ-- 102
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ N H + LE R+F RK A A++ PGG GTLDE FE L L
Sbjct: 103 SPNVHQDISLE----FRYFFLRKLMFAKYA--------DAIIVFPGGFGTLDECFEALTL 150
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++G P+ V+ ++ LLD++ D E G ++ +++ +L KI DS EAL
Sbjct: 151 EQTGKLG-RFPI---VLYGSDYWSGLLDWMRDKMLEQQGNISAEDM-NLVKIVDSPEEAL 205
Query: 181 SYLAEFYDLSSIDKR 195
+ ++ SS++KR
Sbjct: 206 QVVTDYLLSSSLEKR 220
>gi|222147376|ref|YP_002548333.1| hypothetical protein Avi_0471 [Agrobacterium vitis S4]
gi|221734366|gb|ACM35329.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 292
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + + P L + +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADVGAPSIGLNIVLPHEQAPNAFVTPDLSFNFH----YFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+V PGG GTLDEMFE + LIQ +R+ P+P ++ + F+ +
Sbjct: 199 FLMRA--------KAIVVFPGGFGTLDEMFEAVTLIQTKRMA---PIPLILFGRE-FWHR 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
++DF ++GT+A D+V L ++ EA +A Y++ + +
Sbjct: 247 IIDF-DSLAEFGTIAPDDV-KLLSFVETADEAWDIIARRYEIETAE 290
>gi|379734435|ref|YP_005327940.1| hypothetical protein BLASA_0951 [Blastococcus saxobsidens DD2]
gi|378782241|emb|CCG01901.1| conserved protein of unknown function [Blastococcus saxobsidens
DD2]
Length = 275
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-------- 55
DHPHY ELG + +G GPG M+A +GA +AG G VG
Sbjct: 89 DHPHYAAGVELGAALVEA-GYAVITGGGPGAMEAANRGASEAG----GMSVGLGIELPFE 143
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+E EW ++ ++ R+F RK + A A V LPGG GTLDE
Sbjct: 144 QELNEW----------VDVGISFRYFFVRKTMFVKYA--------QAFVILPGGFGTLDE 185
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L L+Q ++ + PV L Y + L+D++ D G L+ + D
Sbjct: 186 LFEALTLVQTRKV-TRFPVILLGTAY---WSGLVDWIRDTMLAGGTISPGDLDLFTVTDD 241
Query: 176 NSEALSYL 183
+EA++ +
Sbjct: 242 VAEAVALI 249
>gi|345864828|ref|ZP_08817024.1| DNA processing protein A [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345877327|ref|ZP_08829078.1| hypothetical protein Rifp1Sym_as00120 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225638|gb|EGV51990.1| hypothetical protein Rifp1Sym_as00120 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|345124065|gb|EGW53949.1| DNA processing protein A [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 241
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHPHY L EIARL + +S G GPG+M+A KGA + P G + + +
Sbjct: 59 DHPHY----GLAEEIARLCSDSGFSVVSGGGPGIMEAANKGAYEGKSPSIGLNI--QLPK 112
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ N PY + L R F +RK + A +A V LPGG GTLDE+ EIL
Sbjct: 113 EQSGN--PYQ--DISLQFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELAEIL 160
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSE 178
L+Q G +P ++++ F+ LLD+ CE GT+ +++ L ++C+ E
Sbjct: 161 TLVQ---TGKTREIPIILVD-GQFWSGLLDWFRHSLCEA-GTIDPEDL-DLLQVCNEPQE 214
Query: 179 ALSYLAEFYD 188
+ + Y+
Sbjct: 215 VVDAIFSHYE 224
>gi|154334412|ref|XP_001562183.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060474|emb|CAM42021.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 332
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 17/168 (10%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R D +G GPG M+A +GA A P G +G +P++
Sbjct: 171 RFGDLVVTTGGGPGFMEAANRGA--ASVP-GAVTMGMGISLPFEKGLNPHVTEGLAFEFH 227
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK ++ SC A+V PGG GTLDE+FE+L L Q ++I S LPV L
Sbjct: 228 YFFTRKFWMMY------SC--RAIVVAPGGFGTLDEIFELLTLKQTKKIPS-LPVVLLC- 277
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F+K ++++ D+G +++DE+ SL DS EA+ ++ EFY
Sbjct: 278 --KQFWKTVVNWQA-LADYGVISQDEIDSLL-FTDSADEAIEHIKEFY 321
>gi|338214244|ref|YP_004658305.1| hypothetical protein [Runella slithyformis DSM 19594]
gi|336308071|gb|AEI51173.1| Conserved hypothetical protein CHP00730 [Runella slithyformis DSM
19594]
Length = 241
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 22/188 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGE 60
PDHP+Y + E+ ++ R +G GPG+M+A +KGA Q GK VG K+ E
Sbjct: 64 PDHPYYKITEEIAAKLVRH-GYGVITGGGPGIMEAGSKGAFEQGGKSVGLNIKLPFEQ-- 120
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
SN Y+ + + FF RK + + V +PGG GTLDE+FE L
Sbjct: 121 --HSNL--YIDPDKNINFDFFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAL 168
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEA 179
LIQ ++IG P+ VM ++ LL+++ D E L+ + D+ EA
Sbjct: 169 TLIQTKKIG-RFPI---VMVGKDYWSGLLEWIKTTMLDTERNINPEDLKLFSLVDTAEEA 224
Query: 180 LSYLAEFY 187
+ + EFY
Sbjct: 225 VRVIDEFY 232
>gi|350553873|ref|ZP_08923028.1| Conserved hypothetical protein CHP00730 [Thiorhodospira sibirica
ATCC 700588]
gi|349789583|gb|EGZ43530.1| Conserved hypothetical protein CHP00730 [Thiorhodospira sibirica
ATCC 700588]
Length = 241
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 27/200 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD+P Y +L EIAR L + SG GPG+M+A KGA P G +
Sbjct: 58 PDNPIY----QLAEEIARGLSDAGFAVVSGGGPGIMEAANKGAFAGKSPSVGLNISL-PN 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E A+ + + L F +RK + A +A V LPGG GTLDE+ EI
Sbjct: 113 EQHANAYQ-----DVSLVFHHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELAEI 159
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + G +P+ ++ + F++ LL+ F G ++ +++A L+ + DS E
Sbjct: 160 LTLVQTGK-GRAIPI---ILVHSPFWQGLLEWFEAVLVKEGMISAEDLA-LYSVVDSAQE 214
Query: 179 ALSYLAEFYDLSSIDKRVHE 198
A+ + +Y+ + E
Sbjct: 215 AVDAIFNYYEARGFEPTAEE 234
>gi|172065467|ref|YP_001816179.1| hypothetical protein BamMC406_6192 [Burkholderia ambifaria MC40-6]
gi|171997709|gb|ACB68626.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
Length = 342
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 7 HYLQSFELGGEIARLLDCTTW------SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + E G +A CT +G GPG+M+A +GA + G P GF + E
Sbjct: 154 YYRVAREFGRIVAHADRCTRTARLAIVTGGGPGIMEAANRGAYERGAPSIGFNI--ELPR 211
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N PYL + +F+ RK L++ A A V PGG GT DE+FE+L
Sbjct: 212 EQAPN--PYLTPDLCFRFHYFAIRKLHLLERA--------KAAVFFPGGYGTFDELFEVL 261
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P+P +++ ++++ + +D L D G + + ++ L+ C+S +E
Sbjct: 262 TLLQTRKIA---PLPVILVG-EAYWLRAVD-LSFLADEGMIDRRDL-ELFTYCESAAEIW 315
Query: 181 SYLAEFY 187
+ +Y
Sbjct: 316 HAIGSWY 322
>gi|436836939|ref|YP_007322155.1| hypothetical protein FAES_3555 [Fibrella aestuarina BUZ 2]
gi|384068352|emb|CCH01562.1| hypothetical protein FAES_3555 [Fibrella aestuarina BUZ 2]
Length = 284
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGE 60
PD+P+Y + E+ ++ R +G GPG+M+A KGA Q GK VG K+ E
Sbjct: 107 PDNPYYTMAEEIAAKLVRH-GYGVITGGGPGIMEAGNKGAFEQGGKSVGLNIKLPFEQ-- 163
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
SN Y+ + + FF RK + A V +PGG+GTLDE+FE L
Sbjct: 164 --HSNI--YIDPDKNINFDFFFVRKVMFVKYA--------QGFVVMPGGMGTLDELFEAL 211
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC---EDWGTVAKDEVASLWKICDSNS 177
LIQ ++I + P+ V+ ++++ L+D++ D ++ +D L + D+ +
Sbjct: 212 TLIQTKKI-ARFPI---VLVGKAYWQGLIDWIMDVMLGQEHNINPED--MKLISLVDTPT 265
Query: 178 EALSYLAEFYD 188
EA+ + +FYD
Sbjct: 266 EAVKVIDDFYD 276
>gi|398804543|ref|ZP_10563536.1| TIGR00730 family protein [Polaromonas sp. CF318]
gi|398093540|gb|EJL83918.1| TIGR00730 family protein [Polaromonas sp. CF318]
Length = 287
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GPG+M A +GA +AG G VG +PY+P E
Sbjct: 139 KLFICT---GGGPGIMQAANRGAHEAG----GLSVGLAIVLPMEEAANPYVPPELSFKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+V PGG GTLDE+FE++ L+Q + PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVVFPGGFGTLDELFEVITLVQTRKAK---PVPIILF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
S++K+LL+ E+ G ++ +++ L++ D A + +FY L
Sbjct: 241 G-SSYWKRLLNTEMLVEE-GVISPNDL-KLFQYVDDPQVAWDLIKDFYRL 287
>gi|345866149|ref|ZP_08818177.1| putative lysine decarboxylase [Bizionia argentinensis JUB59]
gi|344049199|gb|EGV44795.1| putative lysine decarboxylase [Bizionia argentinensis JUB59]
Length = 248
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 22/182 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD HY + ++G +A+ T +G GPG+M+A KGA +AG G+ VG
Sbjct: 61 PDSEHYENAEKIGSALAKT-GFTVMTGGGPGIMEAANKGAFEAG----GYSVGCNIILPF 115
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PYL ++ +F RK L+ + A V +PGG+GTLDE+FE L L
Sbjct: 116 EQKPNPYL--HKWINIPYFFLRKVILVKYSY--------AFVVMPGGIGTLDELFEALTL 165
Query: 123 IQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
IQ + I F V+ +DS ++K+L+ + + +++ +++ L+ + DS E +
Sbjct: 166 IQTKIIHD-----FPVVIFDSKYHKELIQHIEVMAENESISPEDMKLLF-VTDSVEELIR 219
Query: 182 YL 183
++
Sbjct: 220 HI 221
>gi|206562149|ref|YP_002232912.1| putative lysine decarboxylase [Burkholderia cenocepacia J2315]
gi|444362798|ref|ZP_21163296.1| TIGR00730 family protein [Burkholderia cenocepacia BC7]
gi|444370289|ref|ZP_21169971.1| TIGR00730 family protein [Burkholderia cenocepacia K56-2Valvano]
gi|198038189|emb|CAR54142.1| putative lysine decarboxylase [Burkholderia cenocepacia J2315]
gi|443596254|gb|ELT64773.1| TIGR00730 family protein [Burkholderia cenocepacia BC7]
gi|443597808|gb|ELT66218.1| TIGR00730 family protein [Burkholderia cenocepacia K56-2Valvano]
Length = 335
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 7 HYLQSFELGGEIARLLDCTTW------SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + E G +A CT +G GPG+M+A +GA + G P GF + E
Sbjct: 147 YYRVAREFGRIVAHADRCTRTARLAIVTGGGPGIMEAANRGAYERGAPSIGFNI--ELPR 204
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N PY+ +F+ RK L++ A A V PGG GT DE+FE+L
Sbjct: 205 EQAPN--PYITPALCFRFHYFAIRKLHLLERA--------KAAVFFPGGYGTFDELFEVL 254
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P+P +++ ++++++ +D L D G + + ++ L+ C+S ++
Sbjct: 255 TLLQTRKIA---PLPVILVG-EAYWRRAVD-LAFLADEGMIDRRDL-ELFTYCESAAQIW 308
Query: 181 SYLAEFY 187
+ +Y
Sbjct: 309 HAIGSWY 315
>gi|350570007|ref|ZP_08938384.1| methionyl-tRNA formyltransferase [Neisseria wadsworthii 9715]
gi|349797582|gb|EGZ51340.1| methionyl-tRNA formyltransferase [Neisseria wadsworthii 9715]
Length = 244
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP YL + L +++ + + SG GPG+M+A KGA P G + E TA
Sbjct: 60 DHPDYLFTERLARKLSDV-GFSVISGGGPGIMEAANKGAFAGKSPAVGLNI-TLPHEQTA 117
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY L +T + F RK + AV A V +PGG GTLDE+FE L L+
Sbjct: 118 ---NPYQDLS--VTFQHFFPRKVMFVKHAV--------AYVTMPGGFGTLDELFESLTLV 164
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q + P +++ ++F++ L+D++ + E L ++ D E ++Y+
Sbjct: 165 QTGKT----PARPIILVGETFWRGLIDWVKAQLLANGMISPEDMDLIRLMDDEDEIVAYI 220
Query: 184 AEFYD 188
E Y+
Sbjct: 221 FEHYE 225
>gi|239814783|ref|YP_002943693.1| hypothetical protein Vapar_1777 [Variovorax paradoxus S110]
gi|239801360|gb|ACS18427.1| conserved hypothetical protein [Variovorax paradoxus S110]
Length = 297
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GPG+M A +GA + G G VG +PY+
Sbjct: 149 KLFVCT---GGGPGIMQAANRGAHEGG----GLSVGLAIALPMEEEANPYVTPALSFKFH 201
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE++ L+Q + PVP +V+
Sbjct: 202 YFAIRKMHFMMRA--------KALVAFPGGFGTLDELFEVITLVQTRK---SKPVP-IVL 249
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++KKL+DF E+ G ++ +V L++ D+ +A + FY L
Sbjct: 250 FGSAYWKKLVDFDFLVEE-GVISPADV-KLFEYVDAPEDAWDAIKRFYKL 297
>gi|384515364|ref|YP_005710456.1| hypothetical protein CULC809_00826 [Corynebacterium ulcerans 809]
gi|334696565|gb|AEG81362.1| hypothetical protein CULC809_00826 [Corynebacterium ulcerans 809]
Length = 263
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 25/186 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
+G DHP+Y LG E+ + +G GPGLM+A KGA A G VG G ++ E
Sbjct: 82 IGADHPYYDMGVRLGKELVAA-NYAVITGGGPGLMEAANKGACGADGLSVGLGIELPHEQ 140
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 141 G------INKYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGLGTLDELFE 184
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNS 177
+L ++Q ++ + P+ V+ + F+ ++++L D G +A+ +V L+ + DS
Sbjct: 185 VLCMVQTGKV-TNFPI---VLLGEGFWGDMVEWLKDRLVAEGMIAEKDV-DLFLVTDSVE 239
Query: 178 EALSYL 183
EA++++
Sbjct: 240 EAVAHI 245
>gi|315503765|ref|YP_004082652.1| hypothetical protein ML5_2984 [Micromonospora sp. L5]
gi|315410384|gb|ADU08501.1| Conserved hypothetical protein CHP00730 [Micromonospora sp. L5]
Length = 287
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 89/192 (46%), Gaps = 37/192 (19%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P + ELGG +AR +G GPG+M+A +GA +AG G VG
Sbjct: 85 PDSPECRMAEELGGALARA-GYAVITGGGPGVMEAANRGAGEAG----GLSVG------- 132
Query: 63 ASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L R+F ARK + A A V LPGG GTLD
Sbjct: 133 ---LGIELPFEQGLNDWVDLAIDFRYFFARKTMFVKYA--------QAFVVLPGGFGTLD 181
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKIC 173
E+FE L L+Q G P ++M D +++ LLD+L G G + ++ L ++
Sbjct: 182 ELFEALTLVQ---TGKVTRFPVVLMGTD-YWQGLLDWLRGTMATEGKIGPADL-DLIRLT 236
Query: 174 DSNSEALSYLAE 185
D +EA+ ++ E
Sbjct: 237 DDVNEAVRHIVE 248
>gi|440747419|ref|ZP_20926678.1| hypothetical protein C943_3507 [Mariniradius saccharolyticus AK6]
gi|436484339|gb|ELP40343.1| hypothetical protein C943_3507 [Mariniradius saccharolyticus AK6]
Length = 251
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 20/193 (10%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH 67
Y + ++G I+R+ +G GPG+M+A +GA K VGG +G + +
Sbjct: 70 YQLAIDVGERISRM-GFAVMTGGGPGIMEAANRGA----KNVGGKSIGCNIILPFEQHPN 124
Query: 68 PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLER 127
PYL + ++ ++F RK L S A V +PGG GTLDE FE L LIQ +
Sbjct: 125 PYL--DKWMNFKYFFVRKVLL--------SKYSYAFVVMPGGFGTLDEFFEALTLIQ-TK 173
Query: 128 IGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ P+ V+ F++ L D++ ++GT+ K ++ L+ + DS E +++ ++
Sbjct: 174 VMRRFPI---VLMCSDFHEHLYDYIRHMAEYGTINKSDL-DLFLLTDSVEEMETHIKKYA 229
Query: 188 DLSSIDKRVHEVN 200
KR HE+
Sbjct: 230 IEGYGLKRRHELR 242
>gi|409409024|ref|ZP_11257459.1| Rossmann fold nucleotide-binding protein [Herbaspirillum sp. GW103]
gi|386432346|gb|EIJ45174.1| Rossmann fold nucleotide-binding protein [Herbaspirillum sp. GW103]
Length = 248
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 35/195 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ PD+PHY +L EIARL+ + SG GPG+M+A KGA + P G +
Sbjct: 60 IKPDNPHY----QLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELP 115
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ W + L+ R F ARK + A A V LPGG GTL
Sbjct: 116 HEQHGNAWQ----------DISLSFRHFFARKVAFVKYA--------DAYVVLPGGFGTL 157
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKI 172
DE+ E L L+Q G +P +++ + F+ L+D++ D G ++ +V +L ++
Sbjct: 158 DELTEALTLMQ---TGKSRMMPVILVGSE-FWAGLVDWIKTRLVDDGMISPKDV-NLLQV 212
Query: 173 CDSNSEALSYLAEFY 187
D +E L+ + +F+
Sbjct: 213 IDEPAEVLAAIQKFH 227
>gi|392402002|ref|YP_006438614.1| hypothetical protein Turpa_0452 [Turneriella parva DSM 21527]
gi|390609956|gb|AFM11108.1| hypothetical protein Turpa_0452 [Turneriella parva DSM 21527]
Length = 264
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 14 LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
L + R L C SG GPG+M+A +GA A G VG +PY+
Sbjct: 106 LPADARRFLIC---SGGGPGIMEAANRGAAHAR----GLSVGMNISLPFEQEPNPYITQT 158
Query: 74 TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP 133
+F RK L++ A A+VA PGG GTLDE+FE+L L+Q ++ LP
Sbjct: 159 LNFEFHYFFMRKFWLMNMA--------KALVAFPGGYGTLDELFEVLTLVQTRKVQKRLP 210
Query: 134 VPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+ V+ +++K+L+ + W + +++ + D EA +L +
Sbjct: 211 I---VLFGKEYWEKVLN-IEAMAKWRMIKYEDIDFI-HFSDDPEEAFRFLTK 257
>gi|302869753|ref|YP_003838390.1| hypothetical protein Micau_5308 [Micromonospora aurantiaca ATCC
27029]
gi|302572612|gb|ADL48814.1| Conserved hypothetical protein CHP00730 [Micromonospora aurantiaca
ATCC 27029]
Length = 287
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 89/192 (46%), Gaps = 37/192 (19%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P + ELGG +AR +G GPG+M+A +GA +AG G VG
Sbjct: 85 PDSPECRMAEELGGALARA-GYAVITGGGPGVMEAANRGAGEAG----GLSVG------- 132
Query: 63 ASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L R+F ARK + A A V LPGG GTLD
Sbjct: 133 ---LGIELPFEQGLNDWVDLAIDFRYFFARKTMFVKYA--------QAFVVLPGGFGTLD 181
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKIC 173
E+FE L L+Q G P ++M D +++ LLD+L G G + ++ L ++
Sbjct: 182 ELFEALTLVQ---TGKVTRFPVVLMGTD-YWQGLLDWLRGTMATEGKIGPADL-DLIRLT 236
Query: 174 DSNSEALSYLAE 185
D +EA+ ++ E
Sbjct: 237 DDVNEAVRHIVE 248
>gi|300309794|ref|YP_003773886.1| Rossmann fold nucleotide-binding protein [Herbaspirillum
seropedicae SmR1]
gi|300072579|gb|ADJ61978.1| Rossmann fold nucleotide-binding protein [Herbaspirillum
seropedicae SmR1]
Length = 248
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 35/193 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVG---- 55
PD+PHY +L EIARL+ + SG GPG+M+A KGA + P G +
Sbjct: 62 PDNPHY----QLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHE 117
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+ W + L+ R F ARK + A A V LPGG GTLDE
Sbjct: 118 QHGNAWQ----------DISLSFRHFFARKVAFVKYA--------DAYVVLPGGFGTLDE 159
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICD 174
+ E L L+Q G +P +++ F+ L+D++ D G ++ +V +L ++ D
Sbjct: 160 LTEALTLMQ---TGKSRMMPVILVG-SQFWAGLVDWIKTRLVDDGMISPKDV-NLLQVID 214
Query: 175 SNSEALSYLAEFY 187
+E L+ + +F+
Sbjct: 215 EPAEVLAAIQKFH 227
>gi|326800490|ref|YP_004318309.1| hypothetical protein [Sphingobacterium sp. 21]
gi|326551254|gb|ADZ79639.1| Conserved hypothetical protein CHP00730 [Sphingobacterium sp. 21]
Length = 235
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DH Y ++ ARLL + SG GPG+M+A KGA +AG G + E
Sbjct: 60 DHNDY----KIAEACARLLTERGYGVISGGGPGIMEAANKGAYEAGGKSVGLNI-----E 110
Query: 61 WTASNFH-PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
FH Y+ + L +F RK + + + LPGG GT+DE+FE
Sbjct: 111 LPFEQFHNKYIDRDKLLEFNYFFVRKVMFMKYS--------QGYIVLPGGFGTMDELFEA 162
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNS 177
+ LIQ +I + P+ V+ S+Y L +++ D E+ A+D +L+++ D+
Sbjct: 163 ITLIQTGKI-ARFPI---VLVGKSYYGGLFNWIKDRMLEEGKISAED--LNLYRLVDTAE 216
Query: 178 EALSYLAEFYD 188
EA ++ +FYD
Sbjct: 217 EAAGHIFKFYD 227
>gi|415917038|ref|ZP_11554078.1| Decarboxylase family protein [Herbaspirillum frisingense GSF30]
gi|407761404|gb|EKF70474.1| Decarboxylase family protein [Herbaspirillum frisingense GSF30]
Length = 214
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 35/193 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVG---- 55
PD+PHY +L EIARL+ + SG GPG+M+A KGA + P G +
Sbjct: 28 PDNPHY----QLCVEIARLISDAGYAVISGGGPGIMEAANKGAYEGASPSVGLNIELPHE 83
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+ W + L+ R F ARK + A A V LPGG GTLDE
Sbjct: 84 QHGNAWQ----------DISLSFRHFFARKVAFVKYA--------DAYVVLPGGFGTLDE 125
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICD 174
+ E L L+Q G +P +++ + F+ L+D++ D G ++ +V +L ++ D
Sbjct: 126 LTEALTLMQ---TGKSRMMPVILVGSE-FWAGLVDWIKTRLVDDGMISPKDV-NLLQVID 180
Query: 175 SNSEALSYLAEFY 187
+E L+ + +F+
Sbjct: 181 EPAEVLAAIQKFH 193
>gi|337290452|ref|YP_004629473.1| hypothetical protein CULC22_00841 [Corynebacterium ulcerans
BR-AD22]
gi|397653688|ref|YP_006494371.1| hypothetical protein CULC0102_0937 [Corynebacterium ulcerans 0102]
gi|334698758|gb|AEG83554.1| hypothetical protein CULC22_00841 [Corynebacterium ulcerans
BR-AD22]
gi|393402644|dbj|BAM27136.1| hypothetical protein CULC0102_0937 [Corynebacterium ulcerans 0102]
Length = 263
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 25/186 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
+G DHP+Y LG E+ + +G GPGLM+A KGA A G VG G ++ E
Sbjct: 82 IGADHPYYDMGVRLGKELVAA-NYAVITGGGPGLMEAANKGACGADGLSVGLGIELPHEQ 140
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 141 G------INKYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGLGTLDELFE 184
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNS 177
+L ++Q ++ + P+ V+ + F+ ++++L D G +A+ +V L+ + DS
Sbjct: 185 VLCMVQTGKV-TNFPI---VLLGEGFWGGMVEWLKDRLVAEGMIAEKDV-DLFLVTDSVE 239
Query: 178 EALSYL 183
EA++++
Sbjct: 240 EAVAHI 245
>gi|387790462|ref|YP_006255527.1| hypothetical protein Solca_1262 [Solitalea canadensis DSM 3403]
gi|379653295|gb|AFD06351.1| TIGR00730 family protein [Solitalea canadensis DSM 3403]
Length = 238
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 10 QSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+ +E+ EIAR L + SG GPG+M+A KGA G G + E F
Sbjct: 65 EYYEMAVEIARQLTLKGYGIISGGGPGVMEAANKGAHSTGGKSVGLNI-----ELPHEQF 119
Query: 67 H-PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
H Y+ + +T +F RK + + V +PGG GT+DE+FE L LIQ
Sbjct: 120 HNQYIDKDKLMTYDYFFVRKVMFVKYS--------QGFVVMPGGFGTMDELFEALTLIQT 171
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++ + P+ V+ S++ L +++ G E +L+++ D+ EA+ ++
Sbjct: 172 GKV-ARFPI---VLVGTSYWSGLFEWIEKQLIEGGYISAEDMNLFRLVDTADEAVEHIIR 227
Query: 186 FYD 188
FY+
Sbjct: 228 FYN 230
>gi|357407204|ref|YP_004919128.1| hypothetical protein MEALZ_3889 [Methylomicrobium alcaliphilum 20Z]
gi|351719869|emb|CCE25545.1| conserved protein of unknown function [Methylomicrobium
alcaliphilum 20Z]
Length = 242
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDH +YL++ E+ G + + + SG GPG+M+A KGA P G + +
Sbjct: 56 PDHHYYLKTVEIAGLLGQH-NFAVISGGGPGIMEAANKGAKTQKPPAVGLNIELPMEQRP 114
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L R+F RK + ++ V +PGG GTLDE FE L L
Sbjct: 115 ----NPYQDIS--LNFRYFFVRKVMFVRHSM--------GYVCMPGGFGTLDEFFESLTL 160
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALS 181
+Q +I P+P ++ D +++ L+D++ ++GT++++++ + + D E +
Sbjct: 161 MQTHKI---YPLPLVLFGSD-YWQGLMDWVRTTMIEYGTISEEDL-NFITLTDDPQEVVD 215
Query: 182 YLAEFYDLSSIDKR 195
+ + + +R
Sbjct: 216 IMVRHREWKNQQRR 229
>gi|416964439|ref|ZP_11936579.1| hypothetical protein B1M_31567 [Burkholderia sp. TJI49]
gi|325521683|gb|EGD00446.1| hypothetical protein B1M_31567 [Burkholderia sp. TJI49]
Length = 252
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ D F+K LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSD-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 217 QVLDAVLAFY 226
>gi|312795715|ref|YP_004028637.1| 3-isopropylmalate dehydrogenase [Burkholderia rhizoxinica HKI 454]
gi|312167490|emb|CBW74493.1| 3-isopropylmalate dehydrogenase (EC 1.1.1.85) [Burkholderia
rhizoxinica HKI 454]
Length = 259
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 69 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 122
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ N PY + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 123 LPHEQSGN--PYQ--DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELA 170
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ VP +++ +F+K LLD+ D E G + +V L ++ D
Sbjct: 171 EVLTLIQTKKSRH---VPIILVG-STFWKGLLDWFRDSLEPMGLIGPHDV-ELMQVIDEP 225
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 226 DQVLEAVLAFYE 237
>gi|94986786|ref|YP_594719.1| Rossmann fold nucleotide-binding protein [Lawsonia intracellularis
PHE/MN1-00]
gi|442555614|ref|YP_007365439.1| lysine decarboxylase family protein [Lawsonia intracellularis N343]
gi|94731035|emb|CAJ54398.1| predicted Rossmann fold nucleotide-binding protein [Lawsonia
intracellularis PHE/MN1-00]
gi|441493061|gb|AGC49755.1| lysine decarboxylase family protein [Lawsonia intracellularis N343]
Length = 233
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 44/214 (20%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD+P Y ++ I++LL + +G GPGLM+A K A +AG G+ G
Sbjct: 49 PDNPLYKET----EAISKLLVSAGFGIITGGGPGLMEAANKAAFEAG--------GRSIG 96
Query: 60 EWTASNFHPYLPLE----TYLTCR----FFSARKHGLIDCAVRNDSCDRTAVVALPGGVG 111
H +LP E YLT R +F RK + A A V +PGG+G
Sbjct: 97 ------LHIHLPHEEGCNNYLTIRTEYRYFFIRKLMFVKYA--------QAYVVMPGGMG 142
Query: 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDC-EDWGTVAKDEVASL 169
T+DE E L Q +RI PF ++ Y+S F+ L+D++ G + E+ +L
Sbjct: 143 TIDEFSEAFVLTQTKRIH-----PFPIILYNSQFWNGLVDWMRQTMSKEGFIEPSEIDAL 197
Query: 170 WKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKS 203
ICD+ E L + E + K+ L S
Sbjct: 198 LNICDTPEEVLKIIQEKVPTAITHKKNKHKQLHS 231
>gi|254255511|ref|ZP_04948827.1| hypothetical protein BDAG_04856 [Burkholderia dolosa AUO158]
gi|124901248|gb|EAY71998.1| hypothetical protein BDAG_04856 [Burkholderia dolosa AUO158]
Length = 356
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 18/151 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA + G P GF + E A N PY+ + +F+ RK
Sbjct: 195 TGGGPGIMEAANRGAYERGAPSIGFNI--ELPREQAPN--PYITPKLCFRFHYFAIRKLH 250
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ ++++++
Sbjct: 251 LLERA--------KAAVFFPGGYGTFDELFEVLTLLQTRKIA---PLPVILVG-EAYWRR 298
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+DF D G + + ++A L+ C+S ++
Sbjct: 299 AVDF-AFLADEGMIDRRDLA-LFTYCESAAD 327
>gi|402495211|ref|ZP_10841943.1| hypothetical protein AagaZ_12809 [Aquimarina agarilytica ZC1]
Length = 229
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y + ++ EI + +G GPG+M+A KGA +AG G + ++
Sbjct: 53 DHPFYQLATDVAAEIVKH-GYGVITGGGPGIMEAANKGAFEAGGTSVGLNIDLPFEQFD- 110
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + L +F RK + + V +PGG GTLDE+FE + LI
Sbjct: 111 ---NPYIDRDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITLI 159
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALS 181
Q ++ PV ++ F+ L +++ + E +G ++ ++ L + D+ ++ +
Sbjct: 160 QTNKV-DNFPV---ILVGTEFWGGLFEWIKNTLLESFGNISPKDL-DLVHLVDTPNQVIE 214
Query: 182 YLAEFYDLSSI 192
L +FYD +++
Sbjct: 215 ILDKFYDKNNL 225
>gi|392410960|ref|YP_006447567.1| TIGR00730 family protein [Desulfomonile tiedjei DSM 6799]
gi|390624096|gb|AFM25303.1| TIGR00730 family protein [Desulfomonile tiedjei DSM 6799]
Length = 218
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 25/146 (17%)
Query: 12 FELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTASNF 66
+ELG ++ RLL + +S G GPG M+AV +GA +A GK VG ++ +E
Sbjct: 55 YELGRKVGRLLAESGFSVVTGGGPGAMEAVNRGAFEAKGKSVGLNIQLPRE------QTA 108
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PY + + R+F RK + AV A + LPGG GT+DEMFE L LIQ
Sbjct: 109 NPYTSIS--IDFRYFFVRKVMFVKYAV--------AYIILPGGFGTMDEMFEALTLIQTN 158
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFL 152
RI P P +++ D ++K L+ ++
Sbjct: 159 RIK---PFPVILLGKD-YWKDLISWI 180
>gi|313680748|ref|YP_004058487.1| hypothetical protein [Oceanithermus profundus DSM 14977]
gi|313153463|gb|ADR37314.1| Conserved hypothetical protein CHP00730 [Oceanithermus profundus
DSM 14977]
Length = 222
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
GPDHP Y ELG E+A+ +G GPG+M+AV KGA +AG G +
Sbjct: 49 FGPDHPSYALGEELGRELAKA-GFGVVTGGGPGIMEAVNKGAYEAGGVSVGLNIE----- 102
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
HP L R+F RK + AV V LPGG GTLDE+ E+L
Sbjct: 103 -LPHEQHPNHYQTHSLQFRYFFVRKVMFVRYAV--------GFVVLPGGFGTLDELTEVL 153
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q G P P M+ +++ L ++ D + L ++ D E +
Sbjct: 154 VLLQ---TGKVHPFPLFAMD-RGYWRGLEAWIHDTLAERQAVGPQDPGLLRLADRPEEVI 209
Query: 181 S 181
Sbjct: 210 E 210
>gi|326316763|ref|YP_004234435.1| hypothetical protein Acav_1954 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373599|gb|ADX45868.1| Conserved hypothetical protein CHP00730 [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 287
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+ CT G GPG+M+A +GA +AG G + + P L + +
Sbjct: 139 RIYICT---GGGPGIMEAANRGAHEAGALNVGLNIALPHEQSGNRYISPSLSFKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q G PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQ---TGKAKPVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ F+K +++F E GT++ ++ +L+ D EA ++ FY L
Sbjct: 241 GTE-FWKSVVNFEALVEQ-GTISAADL-NLFHYTDDPEEAWGFIKAFYKL 287
>gi|167583896|ref|ZP_02376284.1| hypothetical protein BuboB_01082 [Burkholderia ubonensis Bu]
Length = 250
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 25/191 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ +F++ LL + D + E +L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVG-STFWQGLLQWFRDQMIPNGLINAEDMNLMQVIDDPD 216
Query: 178 EALSYLAEFYD 188
+ L + FY+
Sbjct: 217 QVLDAVLAFYE 227
>gi|313676589|ref|YP_004054585.1| hypothetical protein Ftrac_2499 [Marivirga tractuosa DSM 4126]
gi|312943287|gb|ADR22477.1| Conserved hypothetical protein CHP00730 [Marivirga tractuosa DSM
4126]
Length = 243
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHP+Y + E+ ++ R +G GPG+M+A KGA G + ++
Sbjct: 66 PDHPYYKIAEEVAAKLVRH-GYGVITGGGPGIMEAGNKGAKSENGKSVGLNIVLPFEQFN 124
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ Y+ + +T +F RK + A V +PGG GT+DE+FE L L
Sbjct: 125 ----NIYIDPDKLITFDYFFVRKVMFVKYA--------QGFVVMPGGFGTMDELFEALTL 172
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +IG P+ V+ F+ L+D++ D E V+ +++ L+ + D+ +EA+
Sbjct: 173 IQTHKIG-RFPI---VLVGKKFWSGLIDWIKDTLIEAENNVSPEDM-DLFTVVDTPTEAV 227
Query: 181 SYLAEFY 187
+ FY
Sbjct: 228 KVIDNFY 234
>gi|383451113|ref|YP_005357834.1| hypothetical protein KQS_09215 [Flavobacterium indicum GPTSA100-9]
gi|380502735|emb|CCG53777.1| Protein of unknown function [Flavobacterium indicum GPTSA100-9]
Length = 241
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+ +YL + ++ +I++ +G GPG+M+A KGA G G VG
Sbjct: 64 PEDKYYLLAEKIAYKISKA-GYGVITGGGPGIMEAGNKGAHFGG----GTSVGLNIELPF 118
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+F+PY+ + L +F RK + + V +PGG GTLDEMFE + L
Sbjct: 119 EQHFNPYIDRDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDEMFEAITL 170
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALS 181
IQ ++I ++ P+ ++ F+ LLD++ D A E +L+KI D+ E +
Sbjct: 171 IQTKKI-AKFPI---ILVGREFWTGLLDWIQSVIIDQFKNASPEDMNLFKIVDTEDEVVE 226
Query: 182 YLAEFY 187
L FY
Sbjct: 227 ALDNFY 232
>gi|416935348|ref|ZP_11933957.1| putative Rossmann fold nucleotide-binding protein [Burkholderia sp.
TJI49]
gi|325525195|gb|EGD03065.1| putative Rossmann fold nucleotide-binding protein [Burkholderia sp.
TJI49]
Length = 264
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 7 HYLQSFELGGEIARLLDCTTW------SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + E G +A CT +G GPG+M+A +GA + G P GF + E
Sbjct: 76 YYRVAREFGRIVAHADRCTRTARLAIVTGGGPGIMEAANRGAYERGAPSIGFNI--ELPR 133
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N PY+ + +F+ RK L++ A A V PGG GT DE+FE+L
Sbjct: 134 EQAPN--PYITPDLCFRFHYFAIRKLHLLERA--------KAAVFFPGGYGTFDELFEVL 183
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P+P +++ ++++++ +D L D G + + ++ L+ C+S +
Sbjct: 184 TLLQTRKIA---PLPVILVG-EAYWRRAVD-LAFLADEGMIDRRDL-ELFTYCESAAAIW 237
Query: 181 SYLAEFY 187
+ +Y
Sbjct: 238 HAIGSWY 244
>gi|357383136|ref|YP_004897860.1| decarboxylase [Pelagibacterium halotolerans B2]
gi|351591773|gb|AEQ50110.1| Decarboxylase family protein [Pelagibacterium halotolerans B2]
Length = 284
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 40/201 (19%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+ Q L + + +G GPG+M+A +GA G P G+K+
Sbjct: 113 RFAQLASLTSKATEFTEYVVATGGGPGVMEAGNRGAADVGAPSIGYKI------------ 160
Query: 67 HPYLPLE----TYLTCRF------FSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
LP E TY+T +F F+ RK H L+ V V PGG GT+DE
Sbjct: 161 --VLPHEQAPNTYVTPQFSFNFHYFATRKIHFLMRAKV---------VAIFPGGFGTMDE 209
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
FE L LIQ R+ +P L+ F+ ++L+ E+ GT++ D+ L+ D+
Sbjct: 210 FFEALTLIQTGRMDR---IPLLLFG-KKFWSRVLNLEALAEE-GTISPDDF-KLFSFVDT 263
Query: 176 NSEALSYLAEFYDLSSIDKRV 196
EA + + Y+L SI+ R
Sbjct: 264 ADEAWEIVRKTYNLPSIEHRA 284
>gi|78063066|ref|YP_372974.1| hypothetical protein Bcep18194_B2219 [Burkholderia sp. 383]
gi|77970951|gb|ABB12330.1| conserved hypothetical protein [Burkholderia sp. 383]
Length = 252
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L + SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAAQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVKNS--------DAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFYDLS 190
+ L + FY+ S
Sbjct: 217 QVLDAVLAFYEDS 229
>gi|121609299|ref|YP_997106.1| hypothetical protein Veis_2341 [Verminephrobacter eiseniae EF01-2]
gi|121553939|gb|ABM58088.1| conserved hypothetical protein 730 [Verminephrobacter eiseniae
EF01-2]
Length = 284
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA +AG G + + P L + +
Sbjct: 136 RLYICT---GGGPGIMEAANRGAHEAGALNVGLNIALPHEQSGNRFISPSLSFKFH---- 188
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q ++ PVP +V+
Sbjct: 189 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTQKAK---PVP-IVL 236
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++K+L+DF E+ GT++ ++A L+ D +A + FY L
Sbjct: 237 FGSGYWKRLIDFDVLVEE-GTISAQDLA-LFHYADEPGQAWDLIRGFYRL 284
>gi|386392428|ref|ZP_10077209.1| TIGR00730 family protein [Desulfovibrio sp. U5L]
gi|385733306|gb|EIG53504.1| TIGR00730 family protein [Desulfovibrio sp. U5L]
Length = 218
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 36/165 (21%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLET----YLTCR---- 79
+G GPGLM+A KGA +AG G+ G H +LPLE YLT R
Sbjct: 75 TGGGPGLMEAANKGAAEAG--------GQSIG------LHIHLPLEQKPNPYLTIRSEYR 120
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK + A+ A +A+PGG GTLDE+ E L LIQ RI P P + +
Sbjct: 121 YFFIRKLMFVKYAM--------AYIAMPGGFGTLDEVSEALVLIQTRRIK---PFPIVFL 169
Query: 140 NYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
+F+ L+D F G + G V+ D++ L + D+ EA++++
Sbjct: 170 G-SAFWGGLIDWFKGTLLERGFVSPDDM-ELITVVDTAEEAVAFI 212
>gi|85860500|ref|YP_462702.1| lysine decarboxylase family protein [Syntrophus aciditrophicus SB]
gi|85723591|gb|ABC78534.1| lysine decarboxylase family [Syntrophus aciditrophicus SB]
Length = 219
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 26/163 (15%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA +AG G VG +PY + + ++F RK
Sbjct: 76 TGGGPGIMEAANKGAAEAG----GKSVGMNIRLPFEQKPNPYSNVS--IDYKYFFIRKVM 129
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ AV A V PGG GTLDE+FE L LIQ +RI S PV L +Y +K
Sbjct: 130 FVKYAV--------AYVIFPGGYGTLDELFEALTLIQTKRIKS-FPVILLGSDY---WKG 177
Query: 148 LLDFLGDCEDWGTVAKDEVAS----LWKICDSNSEALSYLAEF 186
L+D+L D + +D + S L +I D EA+ Y+ F
Sbjct: 178 LMDWLNDT----MLKEDMILSDDLDLIRITDDPDEAVRYIQRF 216
>gi|357632872|ref|ZP_09130750.1| Conserved hypothetical protein CHP00730 [Desulfovibrio sp. FW1012B]
gi|357581426|gb|EHJ46759.1| Conserved hypothetical protein CHP00730 [Desulfovibrio sp. FW1012B]
Length = 218
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 36/165 (21%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLET----YLTCR---- 79
+G GPGLM+A KGA +AG G+ G H +LPLE YLT R
Sbjct: 75 TGGGPGLMEAANKGAAEAG--------GQSIG------LHIHLPLEQKPNPYLTIRSEYR 120
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK + A+ A +A+PGG GTLDE+ E L LIQ RI P P + +
Sbjct: 121 YFFIRKLMFVKYAM--------AYIAMPGGFGTLDEVSEALVLIQTRRIK---PFPIVFL 169
Query: 140 NYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
+F+ L+D F G + G V+ D++ L + D+ EA++++
Sbjct: 170 G-SAFWGGLIDWFKGTLLERGFVSPDDM-ELITVVDTAEEAVAFI 212
>gi|167840588|ref|ZP_02467272.1| decarboxylase family protein [Burkholderia thailandensis MSMB43]
gi|424905736|ref|ZP_18329239.1| decarboxylase family protein [Burkholderia thailandensis MSMB43]
gi|390928629|gb|EIP86033.1| decarboxylase family protein [Burkholderia thailandensis MSMB43]
Length = 318
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA +AG P G + + + +PY+ E +F+ R
Sbjct: 171 TIITGGGPGIMEAANRGAHEAGAPSVGLNITLPREQ----HPNPYVTPELCFRFHYFAIR 226
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I S LPV V+ +F
Sbjct: 227 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIAS-LPV---VLVGCAF 274
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + +V L++ C++ E
Sbjct: 275 WRSAVDF-GFLVDEGMIDPRDV-ELFRFCETADE 306
>gi|332663445|ref|YP_004446233.1| hypothetical protein [Haliscomenobacter hydrossis DSM 1100]
gi|332332259|gb|AEE49360.1| Conserved hypothetical protein CHP00730 [Haliscomenobacter
hydrossis DSM 1100]
Length = 241
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP+Y +L +IAR L + +G GPG+M+A KGA GG VG
Sbjct: 61 DHPYY----KLAIDIARRLTIEGYGVITGGGPGIMEAGNKGA----SLYGGKSVGLNINL 112
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
SN +P++ + L R+F RK A A VALPGG GT+DE+FE+L
Sbjct: 113 PFESNCNPFIDNDKNLQFRYFFIRKVMFTKYA--------QAFVALPGGFGTMDEVFEVL 164
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ ++I +++PV + + S K + + ++ D L + D E +
Sbjct: 165 TLIQTKKI-NKVPVILVGTKFWSGLKAWMFEVMQEQEHNISPGD--LDLLPVTDDPEEVI 221
Query: 181 SYLAEFY 187
+ +FY
Sbjct: 222 QIINDFY 228
>gi|384504379|ref|YP_005681049.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 1002]
gi|302330476|gb|ADL20670.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 1002]
Length = 257
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 25/188 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQ-AGKPVG-GFKVGKEA 58
+G DHP+Y LG E+ + +G GPGLM+A KGA + AG VG G ++ E
Sbjct: 76 IGTDHPYYEMGVRLGKELVDA-NYAVITGGGPGLMEAANKGACESAGLSVGLGIELPHEQ 134
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 135 G------INKYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGLGTLDELFE 178
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNS 177
+L ++Q ++ + P+ V+ + F+ ++++L + G +A+ ++ L+ + DS
Sbjct: 179 VLCMVQTGKV-TNFPI---VLLGEKFWGGMVEWLKERLVTEGMIAEKDL-DLFLVTDSVE 233
Query: 178 EALSYLAE 185
EA++++ +
Sbjct: 234 EAVAHIVD 241
>gi|373957069|ref|ZP_09617029.1| Conserved hypothetical protein CHP00730 [Mucilaginibacter paludis
DSM 18603]
gi|373893669|gb|EHQ29566.1| Conserved hypothetical protein CHP00730 [Mucilaginibacter paludis
DSM 18603]
Length = 235
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 26/190 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
++P+Y ++ ARLL + SG GPG+M+A KGA +AG G + E
Sbjct: 59 ENPYY----KMSETAARLLTERGYGVISGGGPGIMEAANKGAYEAGGKSVGLNI-----E 109
Query: 61 WTASNFH-PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
FH Y+ + + +F RK + + + LPGG GT+DE FE
Sbjct: 110 LPFEQFHNKYIDRDKLMEFDYFFVRKVMFMKYS--------QGFIILPGGFGTMDESFEA 161
Query: 120 LALIQLERIGSELPVPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+ LIQ +I + P+ F+ +Y +K + D + + E+ + D++ +L+++ D+ E
Sbjct: 162 ITLIQTGKI-ARFPIVFVGTDYWGGLFKWVEDKMLNAEN--NIKADDL-NLYRVVDTAEE 217
Query: 179 ALSYLAEFYD 188
A+ ++ FYD
Sbjct: 218 AVEHIFRFYD 227
>gi|330821222|ref|YP_004350084.1| hypothetical protein bgla_2g21380 [Burkholderia gladioli BSR3]
gi|327373217|gb|AEA64572.1| Predicted Rossmann fold nucleotide-binding protein [Burkholderia
gladioli BSR3]
Length = 226
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D PHY +L EIAR L + SG GPG+M+A KGA P G + + E
Sbjct: 33 DSPHY----QLTVEIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-ELPHE 87
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +N+ + L R F RK + + AVV +PGG GTLDE+ E+L
Sbjct: 88 QSGNNYQ-----DISLRFRHFFTRKVTFVK--------NSDAVVVMPGGFGTLDELSEVL 134
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEA 179
LIQ ++ S L VP +++ SF++ LL + D G + D++ +L ++ D +
Sbjct: 135 TLIQTKK--SRL-VPIILVG-SSFWQGLLQWFRDQLIPMGLINPDDM-NLMQVIDDPDQV 189
Query: 180 LSYLAEFYD 188
L + FY+
Sbjct: 190 LEAVLAFYE 198
>gi|237654466|ref|YP_002890780.1| hypothetical protein Tmz1t_3814 [Thauera sp. MZ1T]
gi|237625713|gb|ACR02403.1| conserved hypothetical protein [Thauera sp. MZ1T]
Length = 241
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 25/189 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y+ L +IARLL + + SG GPG+M+A KGA P G +
Sbjct: 58 PDHKYYM----LTEKIARLLSDSGFAVISGGGPGIMEAANKGAFFGKSPSVGLNIQLPLE 113
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ A+N PY + T + F ARK + A TA V +PGG GTLDE+ E
Sbjct: 114 Q--AAN--PYQDISQ--TFQHFFARKFMFVKFA--------TAYVVMPGGFGTLDELLEA 159
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
+ LIQ R ++P+ ++ + F++ LLD+L + + E L ++ D E
Sbjct: 160 MTLIQ-TRKSRKIPI---ILVHRPFWQGLLDWLRERLVAEGMINAEDLDLVQVIDEPEEV 215
Query: 180 LSYLAEFYD 188
+ + + Y+
Sbjct: 216 VEAIFKHYE 224
>gi|452851056|ref|YP_007492740.1| conserved protein of unknown function [Desulfovibrio piezophilus]
gi|451894710|emb|CCH47589.1| conserved protein of unknown function [Desulfovibrio piezophilus]
Length = 219
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P Y + EL ++++ + +G GPGLM+A KGA + G G +G
Sbjct: 52 PDEPLYASTVELSKKLSQA-GFSVITGGGPGLMEAGNKGAFENG----GESIGLHIHLPM 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PYL + + R+F RK I A+ A VALPGG GTLDE+ E L L
Sbjct: 107 EQHNNPYLNIRS--DFRYFFIRKLMFIKYAL--------AYVALPGGFGTLDELAEALVL 156
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQ RI P P +V+ F+ L+D+ + A+ L+ + D E +S+
Sbjct: 157 IQTHRIK---PFP-IVLFGTQFWGGLVDWFKEQLVVNHFAESTDLDLFIVTDDPDEVVSH 212
Query: 183 LAE 185
+ +
Sbjct: 213 IQK 215
>gi|296283047|ref|ZP_06861045.1| hypothetical protein CbatJ_05475 [Citromicrobium bathyomarinum
JL354]
Length = 295
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GP +M+A +GA AG G + + + PYL + + +F+ RK H
Sbjct: 150 TGGGPSIMEAGNRGASDAGGESIGLNIVLPHEQAPNTYVTPYLSFQFH----YFALRKMH 205
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ G P+P L+ D F+
Sbjct: 206 FLLRA---------KAVAVFPGGFGTFDEFFELLTLIQ---TGKMKPMPILLFGED-FWS 252
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ A+D W C++ EA + +A+FYDL
Sbjct: 253 RVINFEALAEEGTISARDLDLITW--CETADEAWAAIAKFYDL 293
>gi|300858198|ref|YP_003783181.1| hypothetical protein cpfrc_00780 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288365|ref|YP_005122906.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 3/99-5]
gi|300685652|gb|ADK28574.1| hypothetical protein cpfrc_00780 [Corynebacterium
pseudotuberculosis FRC41]
gi|371575654|gb|AEX39257.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 3/99-5]
Length = 263
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 25/188 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQ-AGKPVG-GFKVGKEA 58
+G DHP+Y LG E+ + +G GPGLM+A KGA + AG VG G ++ E
Sbjct: 82 IGTDHPYYEMGVRLGKELVDA-NYAVITGGGPGLMEAANKGACESAGLSVGLGIELPHEQ 140
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 141 G------INKYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGLGTLDELFE 184
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNS 177
+L ++Q ++ + P+ V+ + F+ ++++L + G +A+ ++ L+ + DS
Sbjct: 185 VLCMVQTGKV-TNFPI---VLLGEKFWGGMVEWLKERLVTEGMIAEKDL-DLFLVTDSVE 239
Query: 178 EALSYLAE 185
EA++++ +
Sbjct: 240 EAVAHIVD 247
>gi|134292956|ref|YP_001116692.1| hypothetical protein Bcep1808_4247 [Burkholderia vietnamiensis G4]
gi|387904749|ref|YP_006335087.1| hypothetical protein MYA_3998 [Burkholderia sp. KJ006]
gi|134136113|gb|ABO57227.1| conserved hypothetical protein 730 [Burkholderia vietnamiensis G4]
gi|387579641|gb|AFJ88356.1| hypothetical protein MYA_3998 [Burkholderia sp. KJ006]
Length = 252
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAAQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 217 QVLDAVLAFY 226
>gi|25027723|ref|NP_737777.1| hypothetical protein CE1167 [Corynebacterium efficiens YS-314]
gi|23493005|dbj|BAC17977.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 273
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 21/193 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP+Y ELG ++ + +G GPGLM+A KGA +AG G VG
Sbjct: 99 EHPYYKTGVELGEKLV-AAEYAVVTGGGPGLMEAPNKGACEAG----GLSVGLGIELPHE 153
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ L L R+F ARK + + A V LPGG GTLDE+FE+L ++
Sbjct: 154 QRLNPYVDLG--LNFRYFFARKTMFLKYS--------QAFVCLPGGYGTLDELFEVLCMV 203
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q ++ + P +++ D F+ LLD++ G G ++ ++ + + D EA+ +
Sbjct: 204 QTGKVTN---FPIVLIGTD-FWAGLLDWIRGRLVADGMISARDIDRVL-VTDDVDEAVRF 258
Query: 183 LAEFYDLSSIDKR 195
+ + + + +R
Sbjct: 259 IVDAHAGLDVARR 271
>gi|333374481|ref|ZP_08466324.1| methionyl-tRNA formyltransferase [Kingella kingae ATCC 23330]
gi|332975434|gb|EGK12326.1| methionyl-tRNA formyltransferase [Kingella kingae ATCC 23330]
Length = 200
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 25/189 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ P HP YL++ L ARLL + +SG GPG+M+A KGA P G +
Sbjct: 32 IAPSHPEYLRTERL----ARLLSDSGFSVFSGGGPGIMEAANKGAFAGKSPTVGMNIILP 87
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +PY + LT F +RK L++ + A V + GG GTLDE+F
Sbjct: 88 HEQKN----NPYQ--DITLTFENFPSRKAMLVNHSF--------AFVVMIGGFGTLDELF 133
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E L LIQ +I P P +V+ +F++ LLD+L + + + L + D
Sbjct: 134 ETLTLIQTRKIQ---PCP-VVLVGKAFWQGLLDWLREQLLTQNLIHADDFDLIYVLDDED 189
Query: 178 EALSYLAEF 186
E + + +F
Sbjct: 190 EIIKTIQQF 198
>gi|227536713|ref|ZP_03966762.1| Rossmann fold nucleotide-binding protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|300773401|ref|ZP_07083270.1| methionyl-tRNA formyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
gi|227243514|gb|EEI93529.1| Rossmann fold nucleotide-binding protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|300759572|gb|EFK56399.1| methionyl-tRNA formyltransferase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 233
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 6 PHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +++ +I +LL + SG GPG+M+A KGA +AG G + E
Sbjct: 56 PREHKYYQMAVDIGKLLTERGYGVISGGGPGIMEAANKGAYEAGGKSVGLNI-----ELP 110
Query: 63 ASNFH-PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
FH Y+ + L +F RK + + + +PGG GT+DE+FE +
Sbjct: 111 FEQFHNKYIDRDKLLEFNYFFVRKVMFMKYS--------QGYIVMPGGFGTMDELFEAIT 162
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
LIQ +I + P+ V+ ++ L+D++ + +E L+++ DS +A
Sbjct: 163 LIQTGKI-ARFPI---VLVGSEYWGGLIDWVQNTMLGNAYISEEDLKLYRVVDSAEDAAE 218
Query: 182 YLAEFYD 188
++ FYD
Sbjct: 219 HIFRFYD 225
>gi|383313958|ref|YP_005374813.1| lysine decarboxylase [Corynebacterium pseudotuberculosis P54B96]
gi|384506471|ref|YP_005683140.1| lysine decarboxylase [Corynebacterium pseudotuberculosis C231]
gi|384508559|ref|YP_005685227.1| lysine decarboxylase [Corynebacterium pseudotuberculosis I19]
gi|384510651|ref|YP_005690229.1| lysine decarboxylase [Corynebacterium pseudotuberculosis PAT10]
gi|385807244|ref|YP_005843641.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 267]
gi|387136312|ref|YP_005692292.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 42/02-A]
gi|302205920|gb|ADL10262.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis C231]
gi|308276155|gb|ADO26054.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis I19]
gi|341824590|gb|AEK92111.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis PAT10]
gi|348606757|gb|AEP70030.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 42/02-A]
gi|380869459|gb|AFF21933.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis P54B96]
gi|383804637|gb|AFH51716.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 267]
Length = 263
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 25/188 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQ-AGKPVG-GFKVGKEA 58
+G DHP+Y LG E+ + +G GPGLM+A KGA + AG VG G ++ E
Sbjct: 82 IGTDHPYYEMGVRLGKELVDA-NYAVITGGGPGLMEAANKGACESAGLSVGLGIELPHEQ 140
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 141 G------INKYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGLGTLDELFE 184
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNS 177
+L ++Q ++ + P+ V+ + F+ ++++L + G +A+ ++ L+ + DS
Sbjct: 185 VLCMVQTGKV-TNFPI---VLLGEKFWGGMVEWLKERLVTEGMIAETDL-DLFLVTDSVE 239
Query: 178 EALSYLAE 185
EA++++ +
Sbjct: 240 EAVAHIVD 247
>gi|440748676|ref|ZP_20927927.1| hypothetical protein C943_0491 [Mariniradius saccharolyticus AK6]
gi|436482800|gb|ELP38888.1| hypothetical protein C943_0491 [Mariniradius saccharolyticus AK6]
Length = 275
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 19/165 (11%)
Query: 16 GEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETY 75
GE+ + +G GPG M+A KGA +AG G + ++ +PY+
Sbjct: 102 GEVFAKAGFSVLTGGGPGAMEAGNKGAFEAGGRSYGLNIILPKEQFP----NPYV--HKS 155
Query: 76 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVP 135
+ +F RK L+ SC A + +PGG+GTLDE+FE LIQ ++IG P P
Sbjct: 156 IEFNYFFIRKVMLVKY-----SC---AFIVMPGGLGTLDELFEAATLIQCKKIG---PFP 204
Query: 136 FLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
+++ + F+K L DF+G G A +E+ KI D+ EA+
Sbjct: 205 LILVGKE-FWKGLRDFVGYMAGQGVFAPEEIG-FSKIVDTPEEAV 247
>gi|303245483|ref|ZP_07331767.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
gi|302493332|gb|EFL53194.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
Length = 218
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 43/192 (22%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P Y ++ G++A LL +S G GPGLM+A KGA AG G +G
Sbjct: 52 DDPLYGET----GKLADLLSRAGYSVITGGGPGLMEAANKGAADAG----GDSIG----- 98
Query: 61 WTASNFHPYLPLET----YLTC----RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
H +LPLE YLT R+F RK + A+ A +A+PGG GT
Sbjct: 99 -----LHIHLPLEQKPNPYLTIKSDYRYFFVRKLMFVKYAM--------AYIAMPGGFGT 145
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWK 171
LDE+ E L LIQ +RI P P + + +F+ L++ F G G ++K ++ L+
Sbjct: 146 LDEVSEALVLIQTKRIK---PFPIIFLG-SAFWSGLMEWFRGTLLSRGFISKGDL-DLFT 200
Query: 172 ICDSNSEALSYL 183
+ D+ EA+ ++
Sbjct: 201 VLDTPEEAVQFI 212
>gi|296127478|ref|YP_003634730.1| hypothetical protein [Brachyspira murdochii DSM 12563]
gi|296019294|gb|ADG72531.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
Length = 220
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 25/152 (16%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+HPHY +L E A+LL + +G GPG+M+A +GA AG G + +
Sbjct: 52 NHPHY----KLAYETAKLLGENKYDIITGGGPGIMEAGNRGAFDAGSGSIGLCIELPFEQ 107
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T +PY+ E L R+F ARK + A AV+ PGG GT+DE FE L
Sbjct: 108 KT----NPYVKEE--LKFRYFFARKVMFLKYA--------KAVIIFPGGFGTMDEWFETL 153
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
LIQ + + +P +VMN ++Y L+++L
Sbjct: 154 TLIQTKVLQR---MPLIVMN-KNYYSDLIEWL 181
>gi|347730760|ref|ZP_08863871.1| putative lysine decarboxylase family protein [Desulfovibrio sp. A2]
gi|347520472|gb|EGY27606.1| putative lysine decarboxylase family protein [Desulfovibrio sp. A2]
Length = 218
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 43/195 (22%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD P Y ++ IAR L + +G GPGLM+A KGA AG
Sbjct: 51 PDSPLYAET----ETIARKLVEAGYGVITGGGPGLMEAGNKGAFDAGG------------ 94
Query: 60 EWTASNFHPYLPLE--------TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVG 111
T+ H +LP+E T R+F RK I A+ A V +PGGVG
Sbjct: 95 --TSVGLHIHLPMEQGANKFVKTRCDFRYFFVRKLMFIKYAM--------AYVVMPGGVG 144
Query: 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLW 170
TLDE+ E L Q RI PF ++ Y S ++ LLD++ D ++E L+
Sbjct: 145 TLDELTEAFVLTQTHRIK-----PFPIVLYKSDYWNGLLDWIRDKMVSYDFIREEEMELF 199
Query: 171 KICDSNSEALSYLAE 185
+ D+ + +SY+ +
Sbjct: 200 TVLDTPEQVVSYIKK 214
>gi|259506875|ref|ZP_05749775.1| lysine decarboxylase [Corynebacterium efficiens YS-314]
gi|259165507|gb|EEW50061.1| lysine decarboxylase [Corynebacterium efficiens YS-314]
Length = 260
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 21/193 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP+Y ELG ++ + +G GPGLM+A KGA +AG G VG
Sbjct: 86 EHPYYKTGVELGEKLV-AAEYAVVTGGGPGLMEAPNKGACEAG----GLSVGLGIELPHE 140
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ L L R+F ARK + + A V LPGG GTLDE+FE+L ++
Sbjct: 141 QRLNPYVDLG--LNFRYFFARKTMFLKYS--------QAFVCLPGGYGTLDELFEVLCMV 190
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q ++ + P +++ D F+ LLD++ G G ++ ++ + + D EA+ +
Sbjct: 191 QTGKVTN---FPIVLIGTD-FWAGLLDWIRGRLVADGMISARDIDRVL-VTDDVDEAVRF 245
Query: 183 LAEFYDLSSIDKR 195
+ + + + +R
Sbjct: 246 IVDAHAGLDVARR 258
>gi|408675170|ref|YP_006874918.1| Conserved hypothetical protein CHP00730 [Emticicia oligotrophica
DSM 17448]
gi|387856794|gb|AFK04891.1| Conserved hypothetical protein CHP00730 [Emticicia oligotrophica
DSM 17448]
Length = 242
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 30/192 (15%)
Query: 3 PDHPHYLQSFELGGE-IARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
PDH +Y S E+ + ++R T G GPG+M+A KGA + G GK G
Sbjct: 65 PDHKYYKLSEEIAAKLVSRGYGVIT--GGGPGVMEAGNKGAAENG--------GKSVGLN 114
Query: 62 TASNF----HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
F + Y+ + + +F ARK C ++ + +PGG GTLDE+F
Sbjct: 115 IKLPFEQVPNRYVDQDKSINFDYFFARKV----CFMKYSQ----GFIVMPGGFGTLDELF 166
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDS 175
E L LIQ ++I + P+ VM ++K LLD+L CE + +++ L K+ D+
Sbjct: 167 EALTLIQTKKI-ARFPI---VMVGSEYWKGLLDWLTQTMCEQEKNINPEDL-KLIKLVDT 221
Query: 176 NSEALSYLAEFY 187
+A+ + EFY
Sbjct: 222 AEDAVKVIDEFY 233
>gi|317969659|ref|ZP_07971049.1| hypothetical protein SCB02_08990 [Synechococcus sp. CB0205]
Length = 337
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 22/158 (13%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G + K GE +PY+ E +F+ RK
Sbjct: 181 TGGGPGIMEAANRGAFDAGGRSIGLSI-KLPGEPEP---NPYISPELCFQFNYFALRKFH 236
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + A V PGG GTLDE+FE+L L Q I ++PV ++ F+++
Sbjct: 237 FVKRSA--------AAVLFPGGFGTLDELFEVLTLRQTA-IKGQMPV---ILFGTEFWQR 284
Query: 148 LLDF--LGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
L+DF L DC + ++E L + DS EA S++
Sbjct: 285 LIDFDYLADC----GLIREEHLELVRFTDSAQEAWSWI 318
>gi|365875967|ref|ZP_09415492.1| hypothetical protein EAAG1_06837 [Elizabethkingia anophelis Ag1]
gi|442588590|ref|ZP_21007401.1| hypothetical protein D505_12221 [Elizabethkingia anophelis R26]
gi|365756479|gb|EHM98393.1| hypothetical protein EAAG1_06837 [Elizabethkingia anophelis Ag1]
gi|442561824|gb|ELR79048.1| hypothetical protein D505_12221 [Elizabethkingia anophelis R26]
Length = 243
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVG-GFKVGKEAGEWT 62
DH +Y + E+ +I L +G GPG+M+A +GA GK +G + E
Sbjct: 69 DHKYYQMATEIAEKITEL-GFGVITGGGPGIMEAGNRGAHGHGKSIGLNIDLPFE----- 122
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+F+PY+ + +F RK + + + +PGG GTLDE+ E L L
Sbjct: 123 -QHFNPYIDDGYNMDYDYFFVRKVMFVKYS--------QGFIVMPGGFGTLDELMEALTL 173
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQ +IG P+ V+ F+ L+D+ + +E +L++I D+ +A+++
Sbjct: 174 IQTNKIG-RFPI---VLVGSEFWSGLIDWFKSSLLKNGLISEEDLNLYRIVDNADDAVAH 229
Query: 183 LAEFYDLSSI 192
+ FY+ +I
Sbjct: 230 IKAFYEKYAI 239
>gi|379715064|ref|YP_005303401.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 316]
gi|386740116|ref|YP_006213296.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 31]
gi|387138381|ref|YP_005694360.1| lysine decarboxylase [Corynebacterium pseudotuberculosis CIP 52.97]
gi|387140387|ref|YP_005696365.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 1/06-A]
gi|389850125|ref|YP_006352360.1| lysine decarboxylase [Corynebacterium pseudotuberculosis 258]
gi|392400327|ref|YP_006436927.1| lysine decarboxylase [Corynebacterium pseudotuberculosis Cp162]
gi|349734859|gb|AEQ06337.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis CIP 52.97]
gi|355392178|gb|AER68843.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653770|gb|AFB72119.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 316]
gi|384476810|gb|AFH90606.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 31]
gi|388247431|gb|AFK16422.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis 258]
gi|390531405|gb|AFM07134.1| Lysine decarboxylase [Corynebacterium pseudotuberculosis Cp162]
Length = 263
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 25/188 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQ-AGKPVG-GFKVGKEA 58
+G DHP+Y LG E+ + +G GPGLM+A KGA + AG VG G ++ E
Sbjct: 82 IGIDHPYYEMGVRLGKELVDA-NYAVITGGGPGLMEAANKGACESAGLSVGLGIELPHEQ 140
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + A V LPGG+GTLDE+FE
Sbjct: 141 G------INKYVDLGLHF--RYFFARKTMFLKYS--------QAFVCLPGGLGTLDELFE 184
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNS 177
+L ++Q ++ + P+ V+ + F+ ++++L + G +A+ ++ L+ + DS
Sbjct: 185 VLCMVQTGKV-TNFPI---VLLGEKFWGGMVEWLKERLVTEGMIAEKDL-DLFLVTDSVE 239
Query: 178 EALSYLAE 185
EA++++ +
Sbjct: 240 EAVAHIVD 247
>gi|402569616|ref|YP_006618960.1| hypothetical protein GEM_4879 [Burkholderia cepacia GG4]
gi|402250813|gb|AFQ51266.1| hypothetical protein GEM_4879 [Burkholderia cepacia GG4]
Length = 252
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L + SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAAQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVKNS--------DAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ +F++ LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVG-STFWQGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFYDLS 190
+ L + FY+ S
Sbjct: 217 QVLDAVLAFYEDS 229
>gi|390443913|ref|ZP_10231698.1| hypothetical protein A3SI_07654 [Nitritalea halalkaliphila LW7]
gi|389665686|gb|EIM77150.1| hypothetical protein A3SI_07654 [Nitritalea halalkaliphila LW7]
Length = 244
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVGGFKVGKEAGEWT 62
DHPHY + E+ ++ R +G GPG+M+A KGA Q GK VG + E
Sbjct: 68 DHPHYKCAEEIAAKLVRH-GYGVITGGGPGIMEAGNKGAHSQNGKSVG---LNIELPFEQ 123
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+N Y+ + + +F RK A V LPGG GTLDE+FE L L
Sbjct: 124 FNNI--YIDPDKIINFDYFFVRKVMFTKYA--------QGFVVLPGGFGTLDELFEALTL 173
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +IG P+ V+ ++++ LLD+L E G +++ ++ L+ + D ++A+
Sbjct: 174 IQTNKIG-RFPI---VLVGKAYWEGLLDWLKATMLEQHGYISEGDL-DLFSVVDEPTDAV 228
Query: 181 SYLAEFY 187
+ EFY
Sbjct: 229 KVIDEFY 235
>gi|167615321|ref|ZP_02383956.1| decarboxylase family protein [Burkholderia thailandensis Bt4]
Length = 244
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 54 LKPDSPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 108
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 109 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +++ + F+ LL + D G + D++ +L K+ D
Sbjct: 156 EVLTLIQTKK--SRL-VPIVLVGSE-FWSGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 210
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 211 DQVLEAVLAFYE 222
>gi|83718275|ref|YP_438804.1| decarboxylase [Burkholderia thailandensis E264]
gi|167577152|ref|ZP_02370026.1| decarboxylase family protein [Burkholderia thailandensis TXDOH]
gi|257141886|ref|ZP_05590148.1| decarboxylase family protein [Burkholderia thailandensis E264]
gi|83652100|gb|ABC36164.1| decarboxylase family protein [Burkholderia thailandensis E264]
Length = 249
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 59 LKPDSPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 113
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 114 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +++ + F+ LL + D G + D++ +L K+ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIVLVGSE-FWSGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 215
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 216 DQVLEAVLAFYE 227
>gi|91788935|ref|YP_549887.1| hypothetical protein Bpro_3075 [Polaromonas sp. JS666]
gi|91698160|gb|ABE44989.1| conserved hypothetical protein 730 [Polaromonas sp. JS666]
Length = 287
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GPG+M+A +GA + +G VG + +PY+
Sbjct: 139 QLFICT---GGGPGIMEAANRGAQE----MGALTVGLNIVLPHEQSANPYISPSVNFKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE++ L+Q G PVP +V+
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVITLVQ---TGKAKPVP-IVL 239
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++K+L +F E+ G +A +++ L++ D A + +FY L
Sbjct: 240 FGSEYWKRLFNFDVLIEE-GAIAPEDL-KLFQYVDEPQAAWDAIKDFYHL 287
>gi|407939438|ref|YP_006855079.1| hypothetical protein C380_13700 [Acidovorax sp. KKS102]
gi|407897232|gb|AFU46441.1| hypothetical protein C380_13700 [Acidovorax sp. KKS102]
Length = 287
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+ CT G GPG+M+A +GA AG G + + P L + +
Sbjct: 139 RIYICT---GGGPGIMEAANRGAHDAGALNVGLNIALPHEQSGNRFISPSLSFKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q ++ PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTKKAK---PVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L++F E+ GT++ ++ +L+ D EA + FY L
Sbjct: 241 GTD-YWKRLINFDVLVEE-GTISAQDL-NLFHYTDEPQEAWDLIRAFYKL 287
>gi|402825064|ref|ZP_10874386.1| hypothetical protein LH128_18879 [Sphingomonas sp. LH128]
gi|402261415|gb|EJU11456.1| hypothetical protein LH128_18879 [Sphingomonas sp. LH128]
Length = 291
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA + G G + + P L + + +F+ RK H
Sbjct: 145 SGGGPSIMEAANRGAAEVGAESLGLNIVLPHEQAPNRYVTPRLSFQFH----YFALRKMH 200
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ G P+P L+ + F++
Sbjct: 201 FLLRA---------RAVAVFPGGFGTFDEFFELLTLIQ---TGKMKPIPILLYGRE-FWE 247
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ AKD SL++ C++ E ++ +FYDL
Sbjct: 248 RVVNFEALAEEGVINAKD--LSLFRWCETAEEGWGHVQQFYDL 288
>gi|392376189|ref|YP_003208022.1| hypothetical protein DAMO_3150 [Candidatus Methylomirabilis
oxyfera]
gi|258593882|emb|CBE70223.1| conserved protein of unknown function [Candidatus Methylomirabilis
oxyfera]
Length = 221
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 21/184 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+G D P Y+ + ++G +A+ +G GPG M+A KGA +AG G + E +
Sbjct: 47 IGRDDPAYMMAEQIGRLLAKH-GYAVITGGGPGAMEAANKGAYEAGGVSVGLNI--ELPQ 103
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N PYL + + F RK + ++ A V LPGG GTLDE+FE +
Sbjct: 104 QQAPN--PYL--TNLVNFQHFFVRKVMFVKHSI--------AFVILPGGFGTLDELFESI 151
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEA 179
LIQ +I P P +++ D +++ L ++L D G ++ D++A L K+ S E
Sbjct: 152 TLIQTRKIK---PFP-VILTDDDYWRGLQEWLRDTVMSEGKISPDDLA-LLKVAHSPEEV 206
Query: 180 LSYL 183
+ +
Sbjct: 207 IQVI 210
>gi|381401373|ref|ZP_09926278.1| hypothetical protein KKB_05735 [Kingella kingae PYKK081]
gi|380833652|gb|EIC13515.1| hypothetical protein KKB_05735 [Kingella kingae PYKK081]
Length = 200
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 25/189 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ P HP YL++ L ARLL + +SG GPG+M+A KGA P G +
Sbjct: 32 IDPSHPEYLRTERL----ARLLSDSGFSVFSGGGPGIMEAANKGAFAGKSPTVGMNIILP 87
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +PY + LT F +RK L++ + A V + GG GTLDE+F
Sbjct: 88 HEQKA----NPYQ--DITLTFENFPSRKAMLVNHSF--------AFVVMIGGFGTLDELF 133
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E L LIQ +I P P +V+ +F++ LLD+L + + L + D
Sbjct: 134 ETLTLIQTRKIQ---PCP-VVLVGKAFWQGLLDWLREQLVTQNLINANDFDLIYVLDDED 189
Query: 178 EALSYLAEF 186
E + + +F
Sbjct: 190 EIIKTIQQF 198
>gi|374623755|ref|ZP_09696257.1| hypothetical protein ECTPHS_12019 [Ectothiorhodospira sp. PHS-1]
gi|373942858|gb|EHQ53403.1| hypothetical protein ECTPHS_12019 [Ectothiorhodospira sp. PHS-1]
Length = 241
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 27/200 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P HP Y L +IAR L + SG GPG+M+A KGA P G + +
Sbjct: 58 PGHPTY----ALAEDIARQLSDAGFAVVSGGGPGIMEAANKGAFAGKSPSIGLNI-QLPH 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E TA+ + + L R F +RK + A +A V LPGG GTLDE+ EI
Sbjct: 113 EQTANPYQ-----DVSLDFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELAEI 159
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + +P+ ++ SF++ LL+ F GT++++++ L+ + D
Sbjct: 160 LTLVQTNKT-RRIPI---ILVGSSFWRGLLEWFETTLVTEGTISEEDL-DLYTLVDDAKS 214
Query: 179 ALSYLAEFYDLSSIDKRVHE 198
+ + FY+ ++ E
Sbjct: 215 VVDAIFNFYEFGGLEPTSEE 234
>gi|110639748|ref|YP_679958.1| hypothetical protein CHU_3379 [Cytophaga hutchinsonii ATCC 33406]
gi|110282429|gb|ABG60615.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 260
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DH +Y +SFE+G +A L T +G GPG+M+A KGA + G G VG
Sbjct: 77 DHEYYKKSFEVGAAVAGL-GFTVMTGGGPGVMEAANKGAKKGG----GRSVGCNIILPME 131
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P+L L + ++F RK ++ C A V +PGG+GTLDE FE + L+
Sbjct: 132 QYANPWLDLS--VNIKYFFVRK--VLLCKYS------YAFVCMPGGMGTLDEFFEAVTLV 181
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +I P+ Y K L+++ + GT++ ++ L+ D E ++L
Sbjct: 182 QTNKI-KRFPIVLFGKEYHKHLYKHLEYMAEA---GTISPKDL-ELFLFTDDIHEMENHL 236
Query: 184 AEF 186
+++
Sbjct: 237 SKY 239
>gi|269795878|ref|YP_003315333.1| hypothetical protein Sked_25950 [Sanguibacter keddieii DSM 10542]
gi|269098063|gb|ACZ22499.1| conserved hypothetical protein, DprA/Smf-related, family 2
[Sanguibacter keddieii DSM 10542]
Length = 280
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 27/184 (14%)
Query: 4 DHPHYLQSFELGGEIAR-LLD--CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP Y ELG + R L+D +G GPG+M+A KGA +AG G VG
Sbjct: 83 DHPDY----ELGVAVGRGLVDRGYAVITGGGPGIMEAANKGAREAG----GLSVGLGIEL 134
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ L + R+F ARK + A + V LPGG GTLDEMFE L
Sbjct: 135 PFEQGMNEYVDLG--VNFRYFFARKTMFVKYA--------SGFVVLPGGFGTLDEMFEAL 184
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEA 179
L+Q ++ +E P+ + +Y + LLD+L + G + ++A L+ I D EA
Sbjct: 185 TLVQTHKV-TEFPIVLVGKDY---WTGLLDWLSTAVLERGMIHAKDLA-LFSIVDDADEA 239
Query: 180 LSYL 183
+ +
Sbjct: 240 VRIV 243
>gi|187250686|ref|YP_001875168.1| hypothetical protein Emin_0269 [Elusimicrobium minutum Pei191]
gi|186970846|gb|ACC97831.1| Conserved hypothetical protein, DprA/Smf-related [Elusimicrobium
minutum Pei191]
Length = 270
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 38/173 (21%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLET----YLT------ 77
+G GPGLM+A +GA +AG GK G F+ LP+E Y+T
Sbjct: 126 TGGGPGLMEASNRGAYKAG--------GKSVG------FNITLPMEQKPNDYITEGMAFL 171
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F+ RK L+ A A+V PGG GT DEMFE+L L+Q + S++PV
Sbjct: 172 FHYFAIRKMHLVIRA--------KAIVVFPGGFGTFDEMFEVLTLVQTGK-KSKIPV--- 219
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
V+ F+ ++++ + +G ++ + + L+ I D+ EA + +++FY L
Sbjct: 220 VLVGKQFWTEVVN-VEKLAHYGVISINNL-KLYNIVDTAEEAWNIISKFYKLK 270
>gi|227497394|ref|ZP_03927626.1| Rossmann fold nucleotide-binding protein [Actinomyces urogenitalis
DSM 15434]
gi|226833265|gb|EEH65648.1| Rossmann fold nucleotide-binding protein [Actinomyces urogenitalis
DSM 15434]
Length = 257
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P P Y + ++G IAR +G GPG+M+A KGA +AG G VG
Sbjct: 78 PQAPAYALAEQVGAGIARA-GYAVITGGGPGVMEAANKGAHEAG----GVSVGLGIELPH 132
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ Y+ L + R+F ARK + + V +PGG GT+DE+FE L L
Sbjct: 133 EQGMNDYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGFGTMDELFEALTL 182
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
+Q ++ E PV V+ F+ L+D+L G G ++ D+ L+ + D+ EA+
Sbjct: 183 VQTRKV-KEFPV---VLVGRQFWSGLVDWLRGTLVTEGVISADD-PGLFHLADTAEEAVD 237
Query: 182 YL 183
Y+
Sbjct: 238 YV 239
>gi|297181610|gb|ADI17794.1| predicted rossmann fold nucleotide-binding protein [uncultured
Sphingobacteriales bacterium HF0130_33B19]
Length = 236
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 22/189 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVGGFKVGKEAGEW 61
PD+ +Y+Q+ E+G + + +G GPG+M+A KGA + GK VG + E
Sbjct: 59 PDNIYYVQAEEIGYLLTQK-GYGVITGGGPGIMEAANKGAKRGQGKSVG---LNIELPFE 114
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ N ++ + L +F RK I A + LPGGVGTLDE+FE +
Sbjct: 115 QSHN--EFIDNDKLLNFDYFFVRKVMFIKYA--------QGFIVLPGGVGTLDELFEAIT 164
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEA 179
LIQ +IG + P+ V+ S++ +LD++ + G ++ +++ L++I D+ SEA
Sbjct: 165 LIQTGKIG-KFPI---VLIGSSYWFGILDWIKEVMLAKEGNISPEDL-DLFQIVDTPSEA 219
Query: 180 LSYLAEFYD 188
+ + +FY
Sbjct: 220 VDIIEKFYQ 228
>gi|114322008|ref|YP_743691.1| hypothetical protein Mlg_2861 [Alkalilimnicola ehrlichii MLHE-1]
gi|114228402|gb|ABI58201.1| conserved hypothetical protein 730 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 241
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 31/193 (16%)
Query: 2 GPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG--- 55
PDHP+Y +L +++R L + SG GPG+M+A KGA P G +
Sbjct: 57 APDHPYY----KLAEDLSRALSDAGFSVVSGGGPGIMEAANKGAHGGKSPSIGLNIQLPH 112
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+++G +PY + L R F +RK + A +A V LPGG GTLDE
Sbjct: 113 EQSG-------NPYQDIS--LNFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDE 155
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+ EIL L+Q G +P +++ Y +++ L+D+ D E L+++ D
Sbjct: 156 LAEILTLVQ---TGKTRRIP-IILVYKPYWQGLVDWFRDTLVAEGAINAEDMDLFQVLDE 211
Query: 176 NSEALSYLAEFYD 188
+E + + Y+
Sbjct: 212 PTEVVDAIFAHYE 224
>gi|126663816|ref|ZP_01734811.1| hypothetical protein FBBAL38_10052 [Flavobacteria bacterium BAL38]
gi|126624080|gb|EAZ94773.1| hypothetical protein FBBAL38_10052 [Flavobacteria bacterium BAL38]
Length = 241
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+ +YL + ++ +I++ +G GPG+M+A KGA G G VG
Sbjct: 64 PEDKNYLLAEKIAFKISKA-GYGVITGGGPGIMEAGNKGAHYGG----GISVGLNIELPF 118
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+F+PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 119 EQHFNPYIDKDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAVTL 170
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALS 181
IQ ++IG + P+ ++ F+ LLD++ D A + +L +I D+ E L
Sbjct: 171 IQTKKIG-KFPI---ILVGSEFWSGLLDWIKTVMIDKMKNANPDDLNLIQIVDTEDEVLD 226
Query: 182 YLAEFY 187
L FY
Sbjct: 227 ALDNFY 232
>gi|227501618|ref|ZP_03931667.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
accolens ATCC 49725]
gi|306835786|ref|ZP_07468786.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
accolens ATCC 49726]
gi|227077643|gb|EEI15606.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
accolens ATCC 49725]
gi|304568337|gb|EFM43902.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
accolens ATCC 49726]
Length = 254
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 28/200 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCT--TWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
P+ Y + ELG ++A +C +G GPG+M+A KGA + G VG G ++ E
Sbjct: 77 PEDASYQMAEELGRKLA---ECAYAVITGGGPGIMEAANKGAHEGDGLSVGLGIELPHEQ 133
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L L R+F ARK + + A V LPGG+GT+DE FE
Sbjct: 134 G------LNKYVDLG--LNFRYFFARKTMFLKYS--------QAFVCLPGGMGTMDEFFE 177
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+L ++Q ++ + P ++M + ++ LL+++ + G ++ L+ + D E
Sbjct: 178 VLCMVQTGKVTN---YPIVLMGTE-YWSGLLEWMKNTLAAGGYINEDDQELFLLTDDPDE 233
Query: 179 ALSYLAEFYDLSSIDKRVHE 198
A++++ E + + S DKR+ E
Sbjct: 234 AVAHIIERHKVMS-DKRIRE 252
>gi|398347385|ref|ZP_10532088.1| rossmann fold nucleotide-binding protein [Leptospira broomii str.
5399]
Length = 258
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 22/174 (12%)
Query: 13 ELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF-HPYLP 71
E+ E+ R+ CT G GPG+M+A +GA++ G P G + + E T + F P +
Sbjct: 100 EISKEVRRMAVCT---GGGPGIMEAANRGAVEGGGPSLGLNI-RLPFEQTINAFADPKIS 155
Query: 72 LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSE 131
+E + +F RK + + +V PGG GT+DE+FE L LIQ R +
Sbjct: 156 IEFH----YFFMRKLWFLRLS--------KGIVVFPGGFGTVDELFETLTLIQTGRNNLK 203
Query: 132 LPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+P V+ Y Y + +G +++G + D++ +L CD +E L L +
Sbjct: 204 IP----VIMYGRKYWDQVFHIGPMKEYGLIDPDDI-NLITYCDEPNEVLEVLKK 252
>gi|373957956|ref|ZP_09617916.1| Conserved hypothetical protein CHP00730 [Mucilaginibacter paludis
DSM 18603]
gi|373894556|gb|EHQ30453.1| Conserved hypothetical protein CHP00730 [Mucilaginibacter paludis
DSM 18603]
Length = 233
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 27/190 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEA 58
+H +Y+ L ++A LL + SG GPG+M+A KGA +AG K VG G ++ EA
Sbjct: 58 EHRYYV----LTEQVAALLTKQGYGVISGGGPGIMEAANKGAFEAGGKSVGLGIELPFEA 113
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+ + Y+ + L ++F RK + A + +PGG GTLDE FE
Sbjct: 114 FD------NKYIDRDKLLEFKYFFVRKVMFMKYA--------QGFIVMPGGFGTLDEFFE 159
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+ LIQ +I + P+ + +Y + L+++ D G K E +L+++ D+ +
Sbjct: 160 AVTLIQTGKI-ARFPIVLVGSDY---WSGLIEWAKDKMLSGGNIKAEDLNLFRLVDTAED 215
Query: 179 ALSYLAEFYD 188
A++++ +FY+
Sbjct: 216 AVNHIVKFYE 225
>gi|53722792|ref|YP_111777.1| decarboxylase [Burkholderia pseudomallei K96243]
gi|254203065|ref|ZP_04909427.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei FMH]
gi|52213206|emb|CAH39246.1| putative decarboxylase [Burkholderia pseudomallei K96243]
gi|147746110|gb|EDK53188.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei FMH]
Length = 220
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 30 LKPDSPHY----KLTVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 84
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 85 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 131
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +V+ +F+ LL + D G + D++ +L K+ D
Sbjct: 132 EVLTLIQTKK--SRL-VP-IVLVGSAFWSGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 186
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 187 DQVLEAVLAFYE 198
>gi|121596637|ref|YP_991094.1| decarboxylase [Burkholderia mallei SAVP1]
gi|124383252|ref|YP_001025494.1| decarboxylase family protein [Burkholderia mallei NCTC 10229]
gi|126442682|ref|YP_001063540.1| hypothetical protein BURPS668_A2547 [Burkholderia pseudomallei 668]
gi|126446138|ref|YP_001077556.1| decarboxylase family protein [Burkholderia mallei NCTC 10247]
gi|126455516|ref|YP_001076436.1| decarboxylase family protein [Burkholderia pseudomallei 1106a]
gi|226195791|ref|ZP_03791378.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
Pakistan 9]
gi|237508730|ref|ZP_04521445.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
gi|238561507|ref|ZP_00441952.2| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|242313269|ref|ZP_04812286.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
1106b]
gi|251767138|ref|ZP_02266115.2| conserved hypothetical protein TIGR00730 [Burkholderia mallei
PRL-20]
gi|254177183|ref|ZP_04883839.1| decarboxylase family protein [Burkholderia mallei ATCC 10399]
gi|254184912|ref|ZP_04891501.1| decarboxylase family protein [Burkholderia pseudomallei 1655]
gi|254193654|ref|ZP_04900086.1| decarboxylase family protein [Burkholderia pseudomallei S13]
gi|254208398|ref|ZP_04914747.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei JHU]
gi|254265272|ref|ZP_04956137.1| decarboxylase family protein [Burkholderia pseudomallei 1710a]
gi|254301195|ref|ZP_04968639.1| decarboxylase family protein [Burkholderia pseudomallei 406e]
gi|254359415|ref|ZP_04975687.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei
2002721280]
gi|386865580|ref|YP_006278528.1| decarboxylase family protein [Burkholderia pseudomallei 1026b]
gi|418397025|ref|ZP_12970774.1| decarboxylase family protein [Burkholderia pseudomallei 354a]
gi|418536801|ref|ZP_13102470.1| decarboxylase family protein [Burkholderia pseudomallei 1026a]
gi|418544113|ref|ZP_13109424.1| decarboxylase family protein [Burkholderia pseudomallei 1258a]
gi|418550954|ref|ZP_13115900.1| decarboxylase family protein [Burkholderia pseudomallei 1258b]
gi|418556620|ref|ZP_13121244.1| decarboxylase family protein [Burkholderia pseudomallei 354e]
gi|121224435|gb|ABM47966.1| decarboxylase family protein [Burkholderia mallei SAVP1]
gi|126222173|gb|ABN85678.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
gi|126229284|gb|ABN92697.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
1106a]
gi|126238992|gb|ABO02104.1| decarboxylase family protein [Burkholderia mallei NCTC 10247]
gi|147751085|gb|EDK58153.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei JHU]
gi|148028602|gb|EDK86562.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei
2002721280]
gi|157810681|gb|EDO87851.1| decarboxylase family protein [Burkholderia pseudomallei 406e]
gi|160698223|gb|EDP88193.1| decarboxylase family protein [Burkholderia mallei ATCC 10399]
gi|169650405|gb|EDS83098.1| decarboxylase family protein [Burkholderia pseudomallei S13]
gi|184215504|gb|EDU12485.1| decarboxylase family protein [Burkholderia pseudomallei 1655]
gi|225932276|gb|EEH28276.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
Pakistan 9]
gi|235000935|gb|EEP50359.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
gi|238524487|gb|EEP87920.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|242136508|gb|EES22911.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
1106b]
gi|243063778|gb|EES45964.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei
PRL-20]
gi|254216274|gb|EET05659.1| decarboxylase family protein [Burkholderia pseudomallei 1710a]
gi|261827200|gb|ABM99356.2| decarboxylase family protein [Burkholderia mallei NCTC 10229]
gi|385350206|gb|EIF56756.1| decarboxylase family protein [Burkholderia pseudomallei 1258b]
gi|385350588|gb|EIF57117.1| decarboxylase family protein [Burkholderia pseudomallei 1258a]
gi|385351693|gb|EIF58159.1| decarboxylase family protein [Burkholderia pseudomallei 1026a]
gi|385366785|gb|EIF72387.1| decarboxylase family protein [Burkholderia pseudomallei 354e]
gi|385369564|gb|EIF74881.1| decarboxylase family protein [Burkholderia pseudomallei 354a]
gi|385662708|gb|AFI70130.1| decarboxylase family protein [Burkholderia pseudomallei 1026b]
Length = 244
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 54 LKPDSPHY----KLTVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 108
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 109 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +V+ +F+ LL + D G + D++ +L K+ D
Sbjct: 156 EVLTLIQTKK--SRL-VP-IVLVGSAFWSGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 210
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 211 DQVLEAVLAFYE 222
>gi|451943857|ref|YP_007464493.1| hypothetical protein A605_05625 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903244|gb|AGF72131.1| hypothetical protein A605_05625 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 283
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 27/184 (14%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG--E 60
HP++ ELG ++ D +G GPGLM+A +GA +A G VG G ++ E G E
Sbjct: 85 HPYHAAGVELGRKLVEA-DYAVITGGGPGLMEAPNQGAHEAEGLSVGLGIELPHEQGLNE 143
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
W ++ L R+F RK + + A V LPGG GTLDE+FE+L
Sbjct: 144 W----------VDLGLNFRYFFVRKTMFLKYS--------QAFVCLPGGFGTLDELFEVL 185
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
++Q ++ P+ V+ F+ L+D+LGD + E L+ + DS EA+
Sbjct: 186 VMVQTGKV-RNFPI---VLIGTGFWSGLIDWLGDRLVEEGMISPEDMDLFLLTDSVDEAV 241
Query: 181 SYLA 184
++
Sbjct: 242 EHIV 245
>gi|78356823|ref|YP_388272.1| hypothetical protein [Desulfovibrio alaskensis G20]
gi|78219228|gb|ABB38577.1| Conserved hypothetical protein CHP00730 [Desulfovibrio alaskensis
G20]
Length = 218
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 41/192 (21%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P P Y ++ +L ARLL + +G GPGLM+A KGA +AG GK G
Sbjct: 51 PSSPLYQETEKL----ARLLVEEGYGVITGGGPGLMEAGNKGATEAG--------GKSVG 98
Query: 60 EWTASNFHPYLPLET----YLTCR----FFSARKHGLIDCAVRNDSCDRTAVVALPGGVG 111
H +LP E Y+ R +F RK I A+ A V +PGG+G
Sbjct: 99 ------LHIHLPFEQNSNQYIKTRCDFKYFFVRKLMFIKYAM--------AYVVMPGGIG 144
Query: 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWK 171
TLDE+ E L Q +RI + P ++ N S++ LLD++ D ++E L
Sbjct: 145 TLDELTEAFVLTQTKRIKA---FPIILYN-SSYWNGLLDWIRDKMVSEGFIREEELDLIT 200
Query: 172 ICDSNSEALSYL 183
+ D+ E L+Y+
Sbjct: 201 VKDTPEEVLAYI 212
>gi|221212338|ref|ZP_03585315.1| conserved hypothetical protein TIGR00730 [Burkholderia multivorans
CGD1]
gi|221167437|gb|EED99906.1| conserved hypothetical protein TIGR00730 [Burkholderia multivorans
CGD1]
Length = 252
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 217 QVLDAVLAFY 226
>gi|334336473|ref|YP_004541625.1| hypothetical protein Isova_0947 [Isoptericola variabilis 225]
gi|334106841|gb|AEG43731.1| Conserved hypothetical protein CHP00730 [Isoptericola variabilis
225]
Length = 277
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 27/187 (14%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHP F + E+ RLL +G GPG+M+A KGA +AG G +G
Sbjct: 85 PDHP----DFAVAEEVGRLLVEAGYAVITGGGPGIMEAANKGAAEAG----GVSIGLGIE 136
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ ++ L + R+F ARK + A + +PGG GT DE+FE
Sbjct: 137 LPFEQGMNEFVNLG--VNFRYFFARKTMFVKYA--------QGFIVMPGGFGTFDELFEA 186
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q ++ + P+ + Y + LL++L G D G +A +V L + DS +
Sbjct: 187 LTLVQTHKV-TGFPIALVGSEY---WGGLLEWLRGAVLDRGMIADADV-DLLHVSDSAQD 241
Query: 179 ALSYLAE 185
A+SY+ E
Sbjct: 242 AVSYVLE 248
>gi|421477047|ref|ZP_15924900.1| TIGR00730 family protein [Burkholderia multivorans CF2]
gi|400227362|gb|EJO57369.1| TIGR00730 family protein [Burkholderia multivorans CF2]
Length = 252
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 217 QVLDAVLAFY 226
>gi|161521364|ref|YP_001584791.1| hypothetical protein Bmul_4828 [Burkholderia multivorans ATCC
17616]
gi|160345414|gb|ABX18499.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
Length = 252
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 217 QVLDAVLAFY 226
>gi|254176583|ref|ZP_04883241.1| decarboxylase family protein [Burkholderia mallei ATCC 10399]
gi|254202914|ref|ZP_04909276.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei FMH]
gi|254208248|ref|ZP_04914597.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei JHU]
gi|147745959|gb|EDK53037.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei FMH]
gi|147750935|gb|EDK58003.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei JHU]
gi|160697625|gb|EDP87595.1| decarboxylase family protein [Burkholderia mallei ATCC 10399]
Length = 292
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 145 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 200
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P ++++ +F
Sbjct: 201 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVS-RAF 248
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 249 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 280
>gi|53716741|ref|YP_104993.1| decarboxylase family protein [Burkholderia mallei ATCC 23344]
gi|121596879|ref|YP_990924.1| decarboxylase [Burkholderia mallei SAVP1]
gi|126446065|ref|YP_001077389.1| decarboxylase family protein [Burkholderia mallei NCTC 10247]
gi|238562385|ref|ZP_00440483.2| decarboxylase family protein [Burkholderia mallei GB8 horse 4]
gi|254359435|ref|ZP_04975707.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei
2002721280]
gi|52422711|gb|AAU46281.1| decarboxylase family protein [Burkholderia mallei ATCC 23344]
gi|121224677|gb|ABM48208.1| decarboxylase family protein [Burkholderia mallei SAVP1]
gi|126238919|gb|ABO02031.1| decarboxylase family protein [Burkholderia mallei NCTC 10247]
gi|148028622|gb|EDK86582.1| conserved hypothetical protein TIGR00730 [Burkholderia mallei
2002721280]
gi|238522679|gb|EEP86122.1| decarboxylase family protein [Burkholderia mallei GB8 horse 4]
Length = 319
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 172 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 227
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +V+ +F
Sbjct: 228 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLP-VVLVSRAF 275
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 276 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 307
>gi|53716627|ref|YP_105126.1| decarboxylase family protein [Burkholderia mallei ATCC 23344]
gi|76819601|ref|YP_336011.1| decarboxylase family protein [Burkholderia pseudomallei 1710b]
gi|134278684|ref|ZP_01765398.1| decarboxylase family protein [Burkholderia pseudomallei 305]
gi|217422540|ref|ZP_03454043.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
576]
gi|254186141|ref|ZP_04892659.1| decarboxylase family protein [Burkholderia pseudomallei Pasteur
52237]
gi|403523651|ref|YP_006659220.1| decarboxylase family protein [Burkholderia pseudomallei BPC006]
gi|52422597|gb|AAU46167.1| decarboxylase family protein [Burkholderia mallei ATCC 23344]
gi|76584074|gb|ABA53548.1| decarboxylase family protein [Burkholderia pseudomallei 1710b]
gi|134250468|gb|EBA50548.1| decarboxylase family protein [Burkholderia pseudomallei 305]
gi|157933827|gb|EDO89497.1| decarboxylase family protein [Burkholderia pseudomallei Pasteur
52237]
gi|217394771|gb|EEC34790.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
576]
gi|403078718|gb|AFR20297.1| decarboxylase family protein [Burkholderia pseudomallei BPC006]
Length = 249
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 59 LKPDSPHY----KLTVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 113
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 114 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +++ +F+ LL + D G + D++ +L K+ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIVLVG-SAFWSGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 215
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 216 DQVLEAVLAFYE 227
>gi|150024935|ref|YP_001295761.1| hypothetical protein FP0845 [Flavobacterium psychrophilum JIP02/86]
gi|149771476|emb|CAL42945.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 242
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD +Y+ + + +I++ +G GPG+M+A KGA + G VG
Sbjct: 65 PDDKYYILAENIAYKISKA-GYGVITGGGPGIMEAGNKGAHRGE----GTSVGLNIVLPF 119
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+++PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 120 EQHYNPYIDKDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITL 171
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ ++IG + P+ ++ +F+ L+D++ E TV++D++ L +I D+ E +
Sbjct: 172 IQTKKIG-KFPI---ILVGTTFWSGLMDWVQQVMIEREKTVSQDDM-KLIQIVDTEDEVV 226
Query: 181 SYLAEFY 187
L FY
Sbjct: 227 DALDRFY 233
>gi|46579940|ref|YP_010748.1| decarboxylase [Desulfovibrio vulgaris str. Hildenborough]
gi|120602646|ref|YP_967046.1| hypothetical protein Dvul_1602 [Desulfovibrio vulgaris DP4]
gi|387153618|ref|YP_005702554.1| hypothetical protein Deval_1765 [Desulfovibrio vulgaris RCH1]
gi|46449356|gb|AAS96007.1| decarboxylase family protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562875|gb|ABM28619.1| conserved hypothetical protein 730 [Desulfovibrio vulgaris DP4]
gi|311234062|gb|ADP86916.1| Conserved hypothetical protein CHP00730 [Desulfovibrio vulgaris
RCH1]
Length = 218
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 39/178 (21%)
Query: 18 IARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE- 73
IARLL + +G GPGLM+A KGA +AG G+ G H +LP E
Sbjct: 62 IARLLVQAGYGVITGGGPGLMEAGNKGAFEAG--------GESVG------LHIHLPFEQ 107
Query: 74 -------TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
T R+F RK I A+ A V +PGG+GT+DE+ E L Q
Sbjct: 108 DSNQYIKTRCDFRYFFVRKLMFIKYAL--------AYVVMPGGMGTIDELSEAFVLAQTR 159
Query: 127 RIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
RI PF ++ Y S F+ LLD++ D G ++E L + D+ + +SY+
Sbjct: 160 RIK-----PFPIILYKSEFWNGLLDWIRDRMVTGGYIREEELDLVTVLDTPEQVVSYI 212
>gi|421866294|ref|ZP_16297966.1| hypothetical protein I35_2682 [Burkholderia cenocepacia H111]
gi|444361881|ref|ZP_21162459.1| TIGR00730 family protein [Burkholderia cenocepacia BC7]
gi|444372714|ref|ZP_21172147.1| TIGR00730 family protein [Burkholderia cenocepacia K56-2Valvano]
gi|358073877|emb|CCE48844.1| hypothetical protein I35_2682 [Burkholderia cenocepacia H111]
gi|443592962|gb|ELT61726.1| TIGR00730 family protein [Burkholderia cenocepacia K56-2Valvano]
gi|443597996|gb|ELT66396.1| TIGR00730 family protein [Burkholderia cenocepacia BC7]
Length = 252
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAAQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F++ LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWQGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 217 QVLDAVLAFY 226
>gi|115357993|ref|YP_775131.1| hypothetical protein Bamb_3242 [Burkholderia ambifaria AMMD]
gi|172062800|ref|YP_001810451.1| hypothetical protein BamMC406_3768 [Burkholderia ambifaria MC40-6]
gi|115283281|gb|ABI88797.1| conserved hypothetical protein 730 [Burkholderia ambifaria AMMD]
gi|171995317|gb|ACB66235.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
Length = 252
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L + SG GPG+M+A KGA P G + +
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 113
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 114 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ +F++ LL + D + E +L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVG-SAFWQGLLQWFRDQLIPMGLINPEDMNLMQVIDDPD 216
Query: 178 EALSYLAEFYDLS 190
+ L + FY+ S
Sbjct: 217 QVLDAVLAFYEDS 229
>gi|406573182|ref|ZP_11048936.1| hypothetical protein B277_00050 [Janibacter hoylei PVAS-1]
gi|404557356|gb|EKA62804.1| hypothetical protein B277_00050 [Janibacter hoylei PVAS-1]
Length = 260
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 25/183 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
D P Y Q ELG +A +G GPG M+A +GA +AG VG G ++ EAG
Sbjct: 84 DSPGYAQGVELGRLVAEA-GYAVITGGGPGAMEAANRGAREAGGTSVGLGIELPFEAG-- 140
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY L + R+F ARK + + V LPGG GTLDE+FE +
Sbjct: 141 ----LNPYCDLG--INFRYFFARKTMFVKYS--------EGFVVLPGGFGTLDEVFEAVT 186
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L Q ++ S P +++ D ++ L+D+L G G ++ D++ L+ + D +EA+
Sbjct: 187 LAQTGKVTS---FPIVLIGVD-YWAGLIDWLRGSVLGGGMISPDDIDRLY-VTDDLTEAV 241
Query: 181 SYL 183
Y+
Sbjct: 242 EYV 244
>gi|337286246|ref|YP_004625719.1| hypothetical protein Thein_0878 [Thermodesulfatator indicus DSM
15286]
gi|335359074|gb|AEH44755.1| Conserved hypothetical protein CHP00730 [Thermodesulfatator indicus
DSM 15286]
Length = 230
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P HP+Y ++ EIARLL +S G GPG+M+A KGA +AG + VG
Sbjct: 53 PGHPYYQKA----EEIARLLAKEGFSIITGGGPGIMEAANKGAAEAG----AYSVGLNIR 104
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+PY ++ + R+F RK + AV ++ +PGG GTLDE FEI
Sbjct: 105 LPREQEANPYANIK--IEFRYFFVRKVMMAKYAV--------GLLCMPGGYGTLDEFFEI 154
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSE 178
+ L+Q +I PVP +V+ ++ L+ ++ + G ++++++ L+ + D E
Sbjct: 155 ITLVQTHKIR---PVP-IVLVESKYWHGLVTWIKERLLHEGMISREDL-DLFTVLDDPRE 209
Query: 179 ALSYLAE 185
+Y +
Sbjct: 210 IAAYFKK 216
>gi|296135594|ref|YP_003642836.1| hypothetical protein Tint_1116 [Thiomonas intermedia K12]
gi|295795716|gb|ADG30506.1| conserved hypothetical protein [Thiomonas intermedia K12]
Length = 295
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 20/166 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +AG G + + +PY+ E R+F+
Sbjct: 137 DFVVVTGGGPGIMEAANRGAFEAGAHSIGLNITLPHEQQP----NPYISPELAFRFRYFA 192
Query: 83 ARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141
RK H L+ A+VA PGG GTLDE+FE+L L+Q ++ + +P+ V+
Sbjct: 193 LRKMHFLLRA---------RALVAFPGGYGTLDELFEVLTLVQTGKM-ARIPI---VLVG 239
Query: 142 DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F+++ +DF ++ A+D L+ DS + ++ L F+
Sbjct: 240 SEFWRRAVDFDYLVDEGFISAEDR--GLFTRVDSAEDIVTILETFH 283
>gi|253998101|ref|YP_003050164.1| hypothetical protein Msip34_0389 [Methylovorus glucosetrophus
SIP3-4]
gi|253984780|gb|ACT49637.1| conserved hypothetical protein [Methylovorus glucosetrophus SIP3-4]
Length = 242
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 27/191 (14%)
Query: 2 GPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
PDHP+Y +L EIAR L + SG GPG+M+A KGA A P G + +
Sbjct: 58 APDHPYY----QLTQEIARQLSEAGFSVISGGGPGIMEAANKGAFYARSPSIGLNI-ELP 112
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
E + + + T F RK + A +A V +PGG GTLDE+ E
Sbjct: 113 HEQKGNQYQ-----DISQTFHHFFMRKVMFVKYA--------SAYVVMPGGFGTLDELME 159
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNS 177
L LIQ G +P +++ ++ F++ +LD F G V+ D++ L ++ D +
Sbjct: 160 ALTLIQ---TGKSRKIP-IILVHEPFWRGMLDWFRNTLVAEGMVSPDDM-DLVQVIDDPA 214
Query: 178 EALSYLAEFYD 188
+ + + Y+
Sbjct: 215 AVVEAIFKHYE 225
>gi|189352469|ref|YP_001948096.1| Rossmann fold nucleotide-binding protein [Burkholderia multivorans
ATCC 17616]
gi|189336491|dbj|BAG45560.1| predicted Rossmann fold nucleotide-binding protein [Burkholderia
multivorans ATCC 17616]
Length = 247
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 54 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 107
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 108 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 156 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 211
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 212 QVLDAVLAFY 221
>gi|398345405|ref|ZP_10530108.1| rossmann fold nucleotide-binding protein [Leptospira inadai serovar
Lyme str. 10]
Length = 258
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 22/174 (12%)
Query: 13 ELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF-HPYLP 71
E+ ++ R+ CT G GPG+M+A +GA++ G P G + + E T + F P +
Sbjct: 100 EISKDVRRMAVCT---GGGPGIMEAANRGAVEGGGPSLGLNI-RLPFEQTINTFADPKIS 155
Query: 72 LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSE 131
+E + +F RK + + +V PGG GT+DE+FE L LIQ R +
Sbjct: 156 IEFH----YFFMRKLWFLRLS--------KGIVVFPGGFGTVDELFETLTLIQTGRNNLK 203
Query: 132 LPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+P V+ Y Y + +G +++G + D++ +L CD +E L L +
Sbjct: 204 IP----VIMYGKKYWDQVFHIGPMKEYGLIDPDDI-NLITYCDEPNEVLEVLKK 252
>gi|206562758|ref|YP_002233521.1| lysine decarboxylase family protein [Burkholderia cenocepacia
J2315]
gi|198038798|emb|CAR54760.1| lysine decarboxylase family protein [Burkholderia cenocepacia
J2315]
Length = 247
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 54 LKPDTPHY----KLAAQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 107
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 108 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F++ LL + D + E L ++ D
Sbjct: 156 EVLTLIQTKK--SRL-VPIILVGSE-FWQGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 211
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 212 QVLDAVLAFY 221
>gi|421478175|ref|ZP_15925943.1| TIGR00730 family protein [Burkholderia multivorans CF2]
gi|400225194|gb|EJO55376.1| TIGR00730 family protein [Burkholderia multivorans CF2]
Length = 346
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 24/187 (12%)
Query: 7 HYLQSFELGGEIARLLDCTTW------SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + E G +A CT +G GPG+M+A +GA + G P GF + E
Sbjct: 142 YYRVAREFGRIVAHADRCTRTARLAIVTGGGPGIMEAANRGAYERGAPSIGFNI--ELPR 199
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N PY+ +F+ RK L++ A A V PGG GT DE+FE+L
Sbjct: 200 EQAPN--PYITPALCFRFHYFAIRKLHLLERA--------KAAVFFPGGYGTFDELFEVL 249
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P+P +++ ++++ + +D + D G + + ++ L+ C+S ++
Sbjct: 250 TLLQTRKIA---PLPVILVG-EAYWSRAVD-VAFLADEGMIDRRDL-ELFTYCESAAQIW 303
Query: 181 SYLAEFY 187
+ +Y
Sbjct: 304 HAIGSWY 310
>gi|351732308|ref|ZP_08949999.1| hypothetical protein AradN_21137 [Acidovorax radicis N35]
Length = 287
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+ CT G GPG+M+A +GA G G + + P L + +
Sbjct: 139 RIYICT---GGGPGIMEAANRGAHDVGALNVGLNIALPHEQSGNRFISPTLSFKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q ++ PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTKKAK---PVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L++F E+ GT++ ++ L+ D EA + FY L
Sbjct: 241 GTD-YWKRLINFEVLVEE-GTISAQDL-KLFHYTDDPQEAWELIKSFYQL 287
>gi|83716305|ref|YP_438654.1| decarboxylase [Burkholderia thailandensis E264]
gi|257141724|ref|ZP_05589986.1| decarboxylase family protein [Burkholderia thailandensis E264]
gi|83650130|gb|ABC34194.1| decarboxylase family protein [Burkholderia thailandensis E264]
Length = 318
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA AG P G + ++ +PY+ E +F+ R
Sbjct: 171 TIITGGGPGIMEAANRGAHDAGAPNIGLNITLPREQYP----NPYVTPELCFRFHYFAIR 226
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 227 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 274
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + ++ L++ C++ E
Sbjct: 275 WRSAVDF-GFFVDEGMIDPHDM-ELFRFCETADE 306
>gi|320103647|ref|YP_004179238.1| hypothetical protein Isop_2109 [Isosphaera pallida ATCC 43644]
gi|319750929|gb|ADV62689.1| Conserved hypothetical protein CHP00730 [Isosphaera pallida ATCC
43644]
Length = 344
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
HP Y + ++G E+ + +G GPGLM+A +GA +AG P G + E S
Sbjct: 145 HPWYQLARDVGYELVKA-GFAVITGGGPGLMEAANRGAFEAGGPSIGCNI--ELPFEQRS 201
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
N + L T + R+F RK + + V LPGG GTLDE+FE L L+Q
Sbjct: 202 NEY----LTTSINFRYFFVRKTMFVKYS--------NGFVILPGGFGTLDELFEALTLVQ 249
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184
+I P ++M D ++K LLD++ + + E +L + ++ +EA +
Sbjct: 250 TRKIHR---FPIVLMGRD-YWKGLLDWVETTQLGTGMISPEDLNLLIVVETAAEARDAIL 305
Query: 185 EFY 187
E Y
Sbjct: 306 ECY 308
>gi|313200167|ref|YP_004038825.1| hypothetical protein MPQ_0406 [Methylovorus sp. MP688]
gi|312439483|gb|ADQ83589.1| conserved hypothetical protein [Methylovorus sp. MP688]
Length = 266
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 27/191 (14%)
Query: 2 GPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
PDHP+Y +L EIAR L + SG GPG+M+A KGA A P G + +
Sbjct: 82 APDHPYY----QLTEEIARQLSEAGFSVISGGGPGIMEAANKGAFYARSPSIGLNI-ELP 136
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
E + + + T F RK + A +A V +PGG GTLDE+ E
Sbjct: 137 HEQKGNQYQ-----DISQTFHHFFMRKVMFVKYA--------SAYVVMPGGFGTLDELME 183
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNS 177
L LIQ G +P +++ ++ F++ +LD F G V+ D++ L ++ D +
Sbjct: 184 ALTLIQ---TGKSRKIP-IILVHEPFWRGMLDWFRNTLVAEGMVSPDDM-DLVQVIDDPA 238
Query: 178 EALSYLAEFYD 188
+ + + Y+
Sbjct: 239 AVVEAIFKHYE 249
>gi|452751573|ref|ZP_21951318.1| Decarboxylase family protein [alpha proteobacterium JLT2015]
gi|451960792|gb|EMD83203.1| Decarboxylase family protein [alpha proteobacterium JLT2015]
Length = 282
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G+ + + A N PY+ E +F+ RK H
Sbjct: 133 SGGGPSIMEAANRGAHDVGQESVALNIVLPFEQ--APN--PYVTPELSFNFHYFAIRKMH 188
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
LI AV A PGG GT+DE+FE L LIQ +I +P L+ ++F++
Sbjct: 189 FLIRA---------RAVAAFPGGFGTMDELFETLTLIQTGKIKR---MPVLLFG-ETFWR 235
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDK 194
+++DF D GT++ ++ L+ ++ E +A+FY + DK
Sbjct: 236 RIVDFEA-LADEGTISHKDL-ELFNFVETAEEGWQIVADFYAIEEGDK 281
>gi|421468327|ref|ZP_15916879.1| TIGR00730 family protein [Burkholderia multivorans ATCC BAA-247]
gi|400232182|gb|EJO61818.1| TIGR00730 family protein [Burkholderia multivorans ATCC BAA-247]
Length = 247
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 54 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 107
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 108 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 156 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 211
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 212 QVLDAVLAFY 221
>gi|221197068|ref|ZP_03570115.1| conserved hypothetical protein TIGR00730 [Burkholderia multivorans
CGD2M]
gi|221203740|ref|ZP_03576758.1| conserved hypothetical protein TIGR00730 [Burkholderia multivorans
CGD2]
gi|221175906|gb|EEE08335.1| conserved hypothetical protein TIGR00730 [Burkholderia multivorans
CGD2]
gi|221183622|gb|EEE16022.1| conserved hypothetical protein TIGR00730 [Burkholderia multivorans
CGD2M]
Length = 247
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L SG GPG+M+A KGA P G + E
Sbjct: 54 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 107
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 108 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F+K LL + D + E L ++ D
Sbjct: 156 EVLTLIQTKK--SRL-VPIILVGSE-FWKGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 211
Query: 178 EALSYLAEFY 187
+ L + FY
Sbjct: 212 QVLDAVLAFY 221
>gi|386284308|ref|ZP_10061530.1| hypothetical protein SULAR_03637 [Sulfurovum sp. AR]
gi|385344593|gb|EIF51307.1| hypothetical protein SULAR_03637 [Sulfurovum sp. AR]
Length = 290
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF-HPYLPLETYLTCRFFS 82
T +G GPG+M+A +GA G G + E + F +PY+ E R+F+
Sbjct: 137 VTLMTGGGPGIMEAANRGASDVGAKSIGLNI-----ELSHEQFPNPYITPELCFQFRYFA 191
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+V PGG GT+DE+FE+L LIQ ++ P+P +++ +
Sbjct: 192 MRKLHFMQRA--------KALVVFPGGFGTMDELFEVLTLIQTKKTP---PIPIILLGKE 240
Query: 143 SFYKKLLDF 151
++ +++DF
Sbjct: 241 -YWNRMIDF 248
>gi|406663942|ref|ZP_11071947.1| hypothetical protein B879_03985 [Cecembia lonarensis LW9]
gi|405551758|gb|EKB47414.1| hypothetical protein B879_03985 [Cecembia lonarensis LW9]
Length = 252
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
P+Y ++G ++ + +G GPG+M+A +GA AG GK G
Sbjct: 68 PYYQVGVKVGERVSEM-GFAVMTGGGPGIMEAANRGAKNAG--------GKSIGCNIILP 118
Query: 66 F--HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
F HP L+ ++ ++F RK L S A + +PGG GTLDE FE L LI
Sbjct: 119 FEQHPNPYLDKWMNFKYFFVRKVLL--------SKYSFAFIVMPGGFGTLDEFFEALTLI 170
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++ PV V+ F++ L +++ ++GT+ K ++ L+ + DS E ++
Sbjct: 171 Q-TKVMKRFPV---VLMCSDFHQSLYEYIQHLAEYGTIDKKDL-DLFLLTDSIEEMEQHI 225
Query: 184 AEF 186
+F
Sbjct: 226 RKF 228
>gi|385679150|ref|ZP_10053078.1| lysine decarboxylase [Amycolatopsis sp. ATCC 39116]
Length = 256
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ++G +A +G GPG M+AV +GA +AG G +G
Sbjct: 85 DHPEYELGRKIGAGLANA-GFAVITGGGPGAMEAVNRGASEAG----GLSIGLGIELPFE 139
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F RK I A A + LPGG GTLDE+FE L L+
Sbjct: 140 QGLNPWVDLG--VNFRYFFTRKTMFIKYA--------QAFICLPGGFGTLDELFEALTLV 189
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ ++ PV V+ S++ L D++ D D+ +L + D EA++ +
Sbjct: 190 QTKKV-TKFPV---VLFGRSYWGGLYDWVRDSVHAQGKISDKDLALLHLTDDVDEAVAMV 245
Query: 184 AEFY 187
E Y
Sbjct: 246 EEAY 249
>gi|254253594|ref|ZP_04946911.1| hypothetical protein BDAG_02861 [Burkholderia dolosa AUO158]
gi|124898239|gb|EAY70082.1| hypothetical protein BDAG_02861 [Burkholderia dolosa AUO158]
Length = 253
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L + SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHY----QDISLRFRHFFTRKVTFVKNS--------DAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F++ LL + D + E +L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWQGLLQWFRDQLIPMGLINPEDMNLMQVIDDPD 216
Query: 178 EALSYLAEFYDLS 190
+ L + FY+ S
Sbjct: 217 QVLDAVLAFYEDS 229
>gi|410027681|ref|ZP_11277517.1| hypothetical protein MaAK2_00710 [Marinilabilia sp. AK2]
Length = 252
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 20/181 (11%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
P+Y + ++G ++ + +G GPG+M+A +GA K VGG +G +
Sbjct: 68 PYYQVALKVGERVSEM-GFAVMTGGGPGIMEAANRGA----KNVGGKSIGCNIILPFEQH 122
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
+PYL + ++ ++F RK L S A + +PGG GTLDE FE L LIQ
Sbjct: 123 PNPYL--DKWMNFKYFFVRKVLL--------SKYSFAFIVMPGGFGTLDEFFEALTLIQ- 171
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++ + PV V+ F++ L +++ D+GT+ K ++ L+ + DS E ++ +
Sbjct: 172 TKVMRKFPV---VLMCSDFHESLYEYIQHMADYGTIDKKDL-DLFLLTDSIDEMEKHIRK 227
Query: 186 F 186
+
Sbjct: 228 Y 228
>gi|167566702|ref|ZP_02359618.1| decarboxylase family protein [Burkholderia oklahomensis EO147]
Length = 305
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 21/169 (12%)
Query: 13 ELGGEIARL---LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
L GE AR T +G GPG+M+A +GA + G P G + ++ +PY
Sbjct: 143 RLVGETARAPHPRRLTIITGGGPGIMEAANRGAHETGAPSIGLNITLPREQFP----NPY 198
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ E +F+ RK L++ A A V PGG GT DE+FE+L L+Q +I
Sbjct: 199 VTPELCFRFHYFAIRKLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA 250
Query: 130 SELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
P+P +++ +F++ +DF D G + +V L++ C++ E
Sbjct: 251 ---PLPVVLVG-RAFWRAAVDF-AFLVDEGMIDPRDV-ELFRFCETADE 293
>gi|167899412|ref|ZP_02486813.1| decarboxylase family protein [Burkholderia pseudomallei 7894]
Length = 279
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 132 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 187
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 188 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 235
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 236 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 267
>gi|19552336|ref|NP_600338.1| Rossmann fold nucleotide-binding protein [Corynebacterium
glutamicum ATCC 13032]
gi|62390000|ref|YP_225402.1| lysine decarboxylase [Corynebacterium glutamicum ATCC 13032]
gi|418246923|ref|ZP_12873311.1| lysine decarboxylase family protein [Corynebacterium glutamicum
ATCC 14067]
gi|21323877|dbj|BAB98503.1| Predicted Rossmann fold nucleotide-binding protein [Corynebacterium
glutamicum ATCC 13032]
gi|41325336|emb|CAF19816.1| Lysine decarboxylase family protein [Corynebacterium glutamicum
ATCC 13032]
gi|354509004|gb|EHE81945.1| lysine decarboxylase family protein [Corynebacterium glutamicum
ATCC 14067]
gi|385143246|emb|CCH24285.1| predicted Rossmann fold nucleotide-binding protein [Corynebacterium
glutamicum K051]
Length = 256
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 19/149 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y ELG ++ D +G GPGLM+A KGA +A G VG
Sbjct: 82 DHPYYKAGVELGEKLV-AADYAVVTGGGPGLMEAPNKGASEAN----GLSVGLGIELPHE 136
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ +PY+ L L R+F ARK + + A V LPGG GTLDE+FE+L ++
Sbjct: 137 QHLNPYVDLG--LNFRYFFARKTMFLKYS--------QAFVCLPGGFGTLDELFEVLCMV 186
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL 152
Q ++ + P+ V+ F+ L+D++
Sbjct: 187 QTGKV-TNFPI---VLIGTEFWAGLVDWI 211
>gi|311740701|ref|ZP_07714528.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311304221|gb|EFQ80297.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 254
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 97/191 (50%), Gaps = 22/191 (11%)
Query: 11 SFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH 67
S++LG E+ R L ++ +G GPG+M+A +GA +AG G VG +
Sbjct: 81 SYQLGVEVGRKLAEHSYAVITGGGPGIMEAANRGAHEAG----GLSVGLGIELPHEQGLN 136
Query: 68 PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLER 127
Y+ L L R+F ARK + + A + LPGG+GT+DE FE++ ++Q +
Sbjct: 137 EYVDLG--LNFRYFFARKTMFLKYS--------QAFICLPGGMGTMDEFFEVMCMVQTGK 186
Query: 128 IGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ + P ++M + ++ LL+++ + + L+ + D EAL+++ + +
Sbjct: 187 VTN---YPIVLMGTE-YWSGLLEWMDNTLAASGYINEGDRELFLLTDDPDEALAHIIQRH 242
Query: 188 DLSSIDKRVHE 198
+ S DKR+ E
Sbjct: 243 QVMS-DKRIRE 252
>gi|167615158|ref|ZP_02383793.1| decarboxylase family protein [Burkholderia thailandensis Bt4]
Length = 294
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA AG P G + ++ +PY+ E +F+ R
Sbjct: 147 TIITGGGPGIMEAANRGAHDAGAPNIGLNITLPREQYP----NPYVTPELCFRFHYFAIR 202
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 203 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 250
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + ++ L++ C++ E
Sbjct: 251 WRSAVDF-GFFVDEGMIDPHDM-ELFRFCETADE 282
>gi|388569946|ref|ZP_10156325.1| hypothetical protein Q5W_4679 [Hydrogenophaga sp. PBC]
gi|388262852|gb|EIK88463.1| hypothetical protein Q5W_4679 [Hydrogenophaga sp. PBC]
Length = 296
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 21/173 (12%)
Query: 17 EIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL 76
E +L CT G GPG+M+A ++GA G VG + +PY+ +
Sbjct: 142 ESEKLFICT---GGGPGIMEAASRGAHDEG----ALNVGLNIALPHEQSANPYITSQLSF 194
Query: 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
+F+ RK + A A++A PGG GTLDE+FE++ L+Q ++ PVP
Sbjct: 195 KFHYFALRKMHFMMRA--------KALLAFPGGFGTLDELFEVITLVQCKK---SKPVPI 243
Query: 137 LVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
L+ D ++K+L++ E+ GT++ +++ L++ D A + +FY L
Sbjct: 244 LLYGSD-YWKRLINLEVLVEE-GTISPEDL-QLFQYVDDPKVAWEAIVKFYQL 293
>gi|167907742|ref|ZP_02494947.1| decarboxylase family protein [Burkholderia pseudomallei NCTC 13177]
Length = 292
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 145 TIITGGGPGIMEAANRGAHERGAPSIGLNITLSREQFP----NPYVTPELCFRFHYFAIR 200
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 201 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 248
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 249 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 280
>gi|156325887|ref|XP_001618612.1| hypothetical protein NEMVEDRAFT_v1g224968 [Nematostella vectensis]
gi|156199541|gb|EDO26512.1| predicted protein [Nematostella vectensis]
Length = 236
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+H +Y +L EIA L + +G GPG+M+A KGA GK G VG
Sbjct: 60 PEHKYY----KLAEEIAFKLTQNGFGVITGGGPGIMEAGNKGA-HKGK---GTSVGLNIE 111
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +P++ + L +F RK + + + LPGG GTLDE+FE
Sbjct: 112 LPFEQHDNPWIDNDKNLEFDYFFVRKVMFVKYS--------QGFIVLPGGFGTLDELFEA 163
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSE 178
+ LIQ +IG P+ + N F+ LLD++ + G +++ +V +L+++ D+ E
Sbjct: 164 ITLIQTHKIG-RFPIILVGKN---FWSGLLDWIKNTLIAEGNISEKDV-NLFRVVDTADE 218
Query: 179 ALSYLAEFY 187
A+ +L +FY
Sbjct: 219 AIEHLNKFY 227
>gi|146276103|ref|YP_001166262.1| hypothetical protein Rsph17025_0045 [Rhodobacter sphaeroides ATCC
17025]
gi|145554344|gb|ABP68957.1| conserved hypothetical protein 730 [Rhodobacter sphaeroides ATCC
17025]
Length = 268
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA +AG G +G + Y+ + +F+ RK
Sbjct: 127 TGGGPGVMEAGNLGAHEAG----GQSIGLNIVLPHEQAPNAYVTPDLSFNFHYFAVRKMH 182
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AVV PGG GTLDEMFE L LIQ +R+ P+PFL+ D F++K
Sbjct: 183 FLMRA--------RAVVVFPGGFGTLDEMFESLTLIQTKRMK---PIPFLLFGRD-FWEK 230
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++++ E GT++ +++ L++ ++ EAL L E
Sbjct: 231 IINWQALAE-IGTISPEDL-RLFRFVETADEALDALDE 266
>gi|404492231|ref|YP_006716337.1| hypothetical protein Pcar_0641 [Pelobacter carbinolicus DSM 2380]
gi|77544338|gb|ABA87900.1| protein of unknown function TIGR00730 [Pelobacter carbinolicus DSM
2380]
Length = 297
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G G G+M+A +GA VG +G +PY+ E +F+ RK
Sbjct: 151 TGGGAGIMEAANRGAYD----VGAENIGLNIVLPMEQEPNPYITPELCFQFHYFAIRKMH 206
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+VA PGG GTLDE+FE L LIQ ++I PVP L+ S++++
Sbjct: 207 FLMRA--------KALVAFPGGYGTLDELFETLTLIQTKKIK---PVPVLLFG-RSYWER 254
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+++F E+ A+D L+ DS +A ++ +FY
Sbjct: 255 VINFNALAEEGMISAED--LQLFSFVDSAEQACRHIFDFY 292
>gi|237747177|ref|ZP_04577657.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229378528|gb|EEO28619.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 245
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 83/191 (43%), Gaps = 23/191 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
PD+P+Y+Q EL RL D SG GPG+M A +GA + G + E E
Sbjct: 62 PDNPYYIQCMELS---RRLSDAGFAVISGGGPGIMAAANRGAYEGKSLSVGLNI--ELPE 116
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N + L R F ARK A A V PGG GTLDEM E+L
Sbjct: 117 EQAPNRWQNVSL----NFRHFFARKVAFAKYA--------DAFVLFPGGFGTLDEMSEVL 164
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ G +P +++ F+K +D++ + + E L +I D + L
Sbjct: 165 TLIQ---TGKSRRIPVILVG-SKFWKGFIDWMYESLLAEGMLNREDIELMQIIDETDKVL 220
Query: 181 SYLAEFYDLSS 191
+ FY+ S
Sbjct: 221 EAIFSFYEKRS 231
>gi|167923927|ref|ZP_02511018.1| decarboxylase family protein [Burkholderia pseudomallei BCC215]
Length = 285
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 138 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 193
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 194 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 241
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 242 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 273
>gi|226195639|ref|ZP_03791226.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
Pakistan 9]
gi|225932124|gb|EEH28124.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
Pakistan 9]
Length = 328
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 181 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 236
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 237 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 284
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 285 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 316
>gi|386285981|ref|ZP_10063185.1| hypothetical protein DOK_01309 [gamma proteobacterium BDW918]
gi|385281024|gb|EIF44932.1| hypothetical protein DOK_01309 [gamma proteobacterium BDW918]
Length = 291
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G +G + +PY+ E +F RK
Sbjct: 140 TGGGPGIMEAANRGASDAG----GKSIGLNIVLPHEQDPNPYISPEFCFRFHYFGIRKMH 195
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AVV PGG GT DE+FE L LIQ G VP +++ ++ + +
Sbjct: 196 FMLRA--------KAVVVCPGGFGTFDELFEALTLIQ---TGKSKRVPVILIGHEFWRQA 244
Query: 148 L-LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
+ L+FL D G ++ ++V ++ + D+ +A ++ +FY LS
Sbjct: 245 INLEFL---RDEGVISPEDV-NMISVVDTAEQAWQHIVDFYQLS 284
>gi|170701219|ref|ZP_02892189.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
gi|170133886|gb|EDT02244.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
Length = 252
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L + SG GPG+M+A KGA P G + +
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 113
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 114 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ +F++ LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVG-SAFWQGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFYDLS 190
+ L + FY+ S
Sbjct: 217 QVLDAVLAFYEDS 229
>gi|325954382|ref|YP_004238042.1| hypothetical protein [Weeksella virosa DSM 16922]
gi|323437000|gb|ADX67464.1| Conserved hypothetical protein CHP00730 [Weeksella virosa DSM
16922]
Length = 238
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDH +Y + E+ + ++ +G GP +M+A KGA + G G VG
Sbjct: 62 PDHLYYNMAEEIAYRLTQI-GFGVITGGGPAIMEAANKGAQRGG----GASVGLGISLPF 116
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ + Y+ + + +F RK + + + +PGG GTLDE+FE L L
Sbjct: 117 EAKLNDYIDNQYMVNFNYFFVRKVMFVKYS--------QGFIVMPGGFGTLDELFEALTL 168
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALS 181
+Q ++ G P+ V+ F+ L D+L + + G +A+ ++ L+++ D+ EA++
Sbjct: 169 VQTKKSG-RFPI---VLVGKKFWSGLFDWLKNTMLEEGYIAEKDL-ELYRLVDTAEEAVA 223
Query: 182 YLAEFYDLSSI 192
++ FY+ +I
Sbjct: 224 HIKAFYEKYNI 234
>gi|167573778|ref|ZP_02366652.1| decarboxylase family protein [Burkholderia oklahomensis C6786]
Length = 272
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 21/169 (12%)
Query: 13 ELGGEIARL---LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
L GE AR T +G GPG+M+A +GA + G P G + ++ +PY
Sbjct: 110 RLVGETARAPHPRRLTIITGGGPGIMEAANRGAHETGAPSIGLNITLPREQFP----NPY 165
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ E +F+ RK L++ A A V PGG GT DE+FE+L L+Q +I
Sbjct: 166 VTPELCFRFHYFAIRKLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA 217
Query: 130 SELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
P+P +++ +F++ +DF D G + +V L++ C++ E
Sbjct: 218 ---PLPVVLVG-RAFWRAAVDF-AFLVDEGMIDPRDV-ELFRFCETADE 260
>gi|145295252|ref|YP_001138073.1| hypothetical protein cgR_1193 [Corynebacterium glutamicum R]
gi|417970092|ref|ZP_12611027.1| hypothetical protein CgS9114_03628 [Corynebacterium glutamicum
S9114]
gi|140845172|dbj|BAF54171.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045774|gb|EGV41444.1| hypothetical protein CgS9114_03628 [Corynebacterium glutamicum
S9114]
Length = 256
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 19/149 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y ELG ++ D +G GPGLM+A KGA +A G VG
Sbjct: 82 DHPYYKAGVELGEKLV-AADYAVVTGGGPGLMEAPNKGASEAS----GLSVGLGIELPHE 136
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ +PY+ L L R+F ARK + + A V LPGG GTLDE+FE+L ++
Sbjct: 137 QHLNPYVDLG--LNFRYFFARKTMFLKYS--------QAFVCLPGGFGTLDELFEVLCMV 186
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL 152
Q ++ + P+ V+ F+ L+D++
Sbjct: 187 QTGKV-TNFPI---VLIGTEFWAGLVDWI 211
>gi|939863|emb|CAA57142.1| ORF2 [Corynebacterium glutamicum]
gi|1094687|prf||2106301B dapE downstream ORF 2
Length = 211
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 19/149 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y ELG ++ D +G GPGLM+A KGA +A G VG
Sbjct: 82 DHPYYKAGVELGEKLV-AADYAVVTGGGPGLMEAPNKGASEAN----GLSVGLGIELPHE 136
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ +PY+ L L R+F ARK + + A V LPGG GTLDE+FE+L ++
Sbjct: 137 QHLNPYVDLG--LNFRYFFARKTMFLKYS--------QAFVCLPGGFGTLDELFEVLCMV 186
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL 152
Q ++ + P+ V+ F+ L+D++
Sbjct: 187 QTGKV-TNFPI---VLIGTEFWAGLVDWI 211
>gi|68074745|ref|XP_679289.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499999|emb|CAI04289.1| conserved hypothetical protein [Plasmodium berghei]
Length = 347
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 15 GGEIARLLDCTTW--SGAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWTASNFHP 68
GEI R T +G GPG M+A KG+ +A GF + K A ++ N
Sbjct: 175 SGEIKRSNKITVAVCTGGGPGFMEAANKGSKEANGKSLGFSITLPFEKGANQYVDENLS- 233
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
+F RK L+ ++ A + +PGG GTLDE+ EIL L Q +R
Sbjct: 234 -------FKFHYFFTRKFWLVYLSL--------AFIIMPGGFGTLDELMEILTLKQCKRF 278
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+P+ ++ F+ +L+F E +G ++KD+V SL+ I DS EA + F
Sbjct: 279 KRHVPI---ILFGKEFWTSILNFDMLVE-YGLISKDDVDSLF-ITDSIEEAYECVINF 331
>gi|53722943|ref|YP_111928.1| hypothetical protein BPSS1922 [Burkholderia pseudomallei K96243]
gi|76818869|ref|YP_336180.1| decarboxylase family protein [Burkholderia pseudomallei 1710b]
gi|386865738|ref|YP_006278686.1| decarboxylase family protein [Burkholderia pseudomallei 1026b]
gi|418397209|ref|ZP_12970940.1| decarboxylase family protein [Burkholderia pseudomallei 354a]
gi|418536968|ref|ZP_13102631.1| decarboxylase family protein [Burkholderia pseudomallei 1026a]
gi|418544286|ref|ZP_13109587.1| decarboxylase family protein [Burkholderia pseudomallei 1258a]
gi|418551129|ref|ZP_13116064.1| decarboxylase family protein [Burkholderia pseudomallei 1258b]
gi|418556791|ref|ZP_13121407.1| decarboxylase family protein [Burkholderia pseudomallei 354e]
gi|52213357|emb|CAH39400.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|76583342|gb|ABA52816.1| decarboxylase family protein [Burkholderia pseudomallei 1710b]
gi|385349254|gb|EIF55836.1| decarboxylase family protein [Burkholderia pseudomallei 1258b]
gi|385349894|gb|EIF56450.1| decarboxylase family protein [Burkholderia pseudomallei 1258a]
gi|385351183|gb|EIF57672.1| decarboxylase family protein [Burkholderia pseudomallei 1026a]
gi|385366331|gb|EIF71955.1| decarboxylase family protein [Burkholderia pseudomallei 354e]
gi|385369217|gb|EIF74570.1| decarboxylase family protein [Burkholderia pseudomallei 354a]
gi|385662866|gb|AFI70288.1| decarboxylase family protein [Burkholderia pseudomallei 1026b]
Length = 315
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 168 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 223
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 224 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 271
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 272 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 303
>gi|296270981|ref|YP_003653613.1| hypothetical protein Tbis_3023 [Thermobispora bispora DSM 43833]
gi|296093768|gb|ADG89720.1| conserved hypothetical protein [Thermobispora bispora DSM 43833]
Length = 248
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y LG + + +G GPGLM+A +GA +AG G VG
Sbjct: 78 DHPDYELGVRLGAALVKA-GYAVITGGGPGLMEAANRGAYEAG----GISVGLGIELPHE 132
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ Y+ L + R+F RK I A C VALPGG GTLDE+FE L L+
Sbjct: 133 QRLNDYINLG--IEFRYFFVRKTMFIKYA-----C---GFVALPGGFGTLDELFEALTLV 182
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALSY 182
Q ++ S P ++M F+ L+D++ D G + ++E A L + D EA+
Sbjct: 183 QTRKVTS---FPVILMG-SKFWSPLIDWVRTTLVDTGKLTEEE-AGLISLTDDPDEAVRI 237
Query: 183 L 183
+
Sbjct: 238 I 238
>gi|167576982|ref|ZP_02369856.1| decarboxylase family protein [Burkholderia thailandensis TXDOH]
Length = 298
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA AG P G + ++ +PY+ E +F+ R
Sbjct: 151 TIITGGGPGIMEAANRGAHDAGAPNIGLNITLPREQYP----NPYVTPELCFRFHYFAIR 206
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 207 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 254
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + ++ L++ C++ E
Sbjct: 255 WRSAVDF-GFFVDEGMIDPHDM-ELFRFCETADE 286
>gi|237510354|ref|ZP_04523069.1| decarboxylase family protein [Burkholderia pseudomallei MSHR346]
gi|235002559|gb|EEP51983.1| decarboxylase family protein [Burkholderia pseudomallei MSHR346]
Length = 319
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 172 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 227
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 228 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 275
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 276 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 307
>gi|126442731|ref|YP_001063748.1| decarboxylase family protein [Burkholderia pseudomallei 668]
gi|134278776|ref|ZP_01765490.1| decarboxylase family protein [Burkholderia pseudomallei 305]
gi|167724850|ref|ZP_02408086.1| decarboxylase family protein [Burkholderia pseudomallei DM98]
gi|217422717|ref|ZP_03454220.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
576]
gi|126222222|gb|ABN85727.1| decarboxylase family protein [Burkholderia pseudomallei 668]
gi|134250560|gb|EBA50640.1| decarboxylase family protein [Burkholderia pseudomallei 305]
gi|217394948|gb|EEC34967.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
576]
Length = 292
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 145 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 200
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 201 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 248
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 249 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 280
>gi|383759618|ref|YP_005438604.1| hypothetical protein RGE_37660 [Rubrivivax gelatinosus IL144]
gi|381380288|dbj|BAL97105.1| hypothetical protein RGE_37660 [Rubrivivax gelatinosus IL144]
Length = 298
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA + VGG +G +PY+ E +F+ RK H
Sbjct: 144 TGGGPGIMEAGNRGAYE----VGGKSIGLNIVLPHEQAPNPYITPELCFQFHYFALRKMH 199
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+V PGG GTLDE+FE + LIQ G P P L+ +F++
Sbjct: 200 FLMRS---------KALVCFPGGFGTLDELFETMTLIQ---TGKSRPRPILLFG-RAFWE 246
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSI 192
KL+DF A D +L++ ++ EA +LA FY +I
Sbjct: 247 KLIDFEHLVATGMIGAGD--LNLFRFVETAEEAWDHLASFYGFDAI 290
>gi|429195571|ref|ZP_19187596.1| TIGR00730 family protein [Streptomyces ipomoeae 91-03]
gi|428668758|gb|EKX67756.1| TIGR00730 family protein [Streptomyces ipomoeae 91-03]
Length = 252
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
D P Y LG L+D +G GPG M+A KGA++AG G VG
Sbjct: 86 DSPEYEAGVRLG---RGLVDAGFAVITGGGPGAMEAANKGALEAG----GTSVGLGIELP 138
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 139 FEQGLNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +++ + P+ V+ +S++ L+D+L + G A+ ++A L+ + D EA+
Sbjct: 189 LVQTQKV-TRFPI---VLFGESYWSGLIDWLSNTLVAQGKAAQKDLA-LFHVTDDVEEAV 243
Query: 181 SYLAE 185
+ +++
Sbjct: 244 AMVSK 248
>gi|407893897|ref|ZP_11152927.1| hypothetical protein Dmas2_07665 [Diplorickettsia massiliensis 20B]
Length = 311
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 20/164 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA + G + A N P++ E +F+ RK H
Sbjct: 145 TGGGPGIMEAANRGAAEVKAKSIGLNII--LPHEQAPN--PHISPELCFQFHYFAIRKMH 200
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
LI A+V PGG GTLDE+FE L L+Q ++I P+P L+ F+
Sbjct: 201 FLIRA---------RALVCFPGGYGTLDELFETLTLLQNKKIK---PIPLLLFG-KKFWS 247
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
KL++F ++ G ++++++ L+ +S +A +A+FYDL
Sbjct: 248 KLINFDFMVKE-GMISQEDL-KLFHYVESAEQAWKSIADFYDLQ 289
>gi|332527280|ref|ZP_08403345.1| hypothetical protein RBXJA2T_15178 [Rubrivivax benzoatilyticus JA2]
gi|332111697|gb|EGJ11678.1| hypothetical protein RBXJA2T_15178 [Rubrivivax benzoatilyticus JA2]
Length = 298
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA + VGG +G +PY+ E +F+ RK
Sbjct: 144 TGGGPGIMEAGNRGAFE----VGGKSLGLNIVLPHEQAPNPYITPELCFQFHYFALRKMH 199
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A+V PGG GTLDE+FE + LIQ G P P L+ +F++K
Sbjct: 200 FV--------MRSKALVCFPGGFGTLDELFETMTLIQ---TGKSRPRPILLFG-RAFWEK 247
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSI 192
L++F E A D +L++ ++ EA +LA FY ++
Sbjct: 248 LINFEHLVETGMIGAGD--LNLFRFVETAEEAWDHLASFYGFDTL 290
>gi|365959259|ref|YP_004940826.1| hypothetical protein FCOL_00920 [Flavobacterium columnare ATCC
49512]
gi|365735940|gb|AEW85033.1| hypothetical protein FCOL_00920 [Flavobacterium columnare ATCC
49512]
Length = 240
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 17/161 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA + G VG +++PY+ + L +F RK
Sbjct: 87 TGGGPGIMEAGNKGAHRGE----GISVGLNIELPFEQHYNPYIDKDKNLNFDYFFVRKVM 142
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + V +PGG GTLDE+FE + LIQ ++IG P +++ + F+
Sbjct: 143 FVKYS--------QGFVVMPGGFGTLDELFEAITLIQTKKIGR---FPIILVGTE-FWSG 190
Query: 148 LLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
LLD++ + D A E +L KI D+ E + L FY
Sbjct: 191 LLDWIKNVMIDKQKNANPEDMNLIKIVDTEDEVVEALDNFY 231
>gi|305681935|ref|ZP_07404739.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
gi|305658408|gb|EFM47911.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
Length = 254
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 27/185 (14%)
Query: 5 HPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG 59
HP +ELG + R L + + +G GPG+M++ +GA +A G VG G ++ KE G
Sbjct: 80 HPVGSPYYELGRTLGRKLVESQYAVITGGGPGVMESANRGAQEADGLSVGLGIELPKEQG 139
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ Y+ L + R+F ARK + + A V LPGG GTLDE+FE+
Sbjct: 140 ------INEYVDLG--VNFRYFFARKTMFLKYS--------QAFVCLPGGFGTLDELFEV 183
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSE 178
L ++Q ++ + P ++M D F++ L+ +L D G +A D++ L+ + DS E
Sbjct: 184 LCMVQTGKVTN---YPIVLMGVD-FWQPLVQWLTDRLVAEGMIAADDL-ELFLLTDSVDE 238
Query: 179 ALSYL 183
A++++
Sbjct: 239 AVAHI 243
>gi|218667537|ref|YP_002427457.1| hypothetical protein AFE_3095 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218519750|gb|ACK80336.1| conserved hypothetical protein TIGR00730 [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 245
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+HP YL++ E+ +++ + SG GPG+M+A KGA + G+ +G
Sbjct: 62 PEHPWYLKAQEIAEKLSNA-GFSVISGGGPGVMEAANKGAFRGT----GYSIGLNIELPH 116
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY + ++ F +RK + AV A V +PGG GTLDE+ E L L
Sbjct: 117 EQHTNPYQ--DVSISFEHFYSRKVMFVKYAV--------AYVVMPGGFGTLDELAECLTL 166
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G +P +++ SF+K L+D+ D + E L + D E +S
Sbjct: 167 VQ---TGKTRKMPIILVE-SSFWKGLIDWWRDSMLTAGTIRQEDLDLITMIDDTDEVVSA 222
Query: 183 LAEFYD 188
+ Y+
Sbjct: 223 IFNHYE 228
>gi|254184730|ref|ZP_04891319.1| decarboxylase family protein [Burkholderia pseudomallei 1655]
gi|184215322|gb|EDU12303.1| decarboxylase family protein [Burkholderia pseudomallei 1655]
Length = 317
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 170 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 225
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I + LPV V+ +F
Sbjct: 226 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKI-TPLPV---VLVGRAF 273
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 274 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 305
>gi|420151625|ref|ZP_14658725.1| TIGR00730 family protein [Actinomyces massiliensis F0489]
gi|394766496|gb|EJF47562.1| TIGR00730 family protein [Actinomyces massiliensis F0489]
Length = 254
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 21/183 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y + ++G +AR +G GPG+M+A KGA AG G VG
Sbjct: 76 DDPAYALAQQIGAGLARS-GYGVITGGGPGMMEAANKGAHDAG----GVSVGLGIELPHE 130
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE + L+
Sbjct: 131 QGMNEYVDLG--VNFRYFFARKTMFLKYS--------DGFVVMPGGMGTLDELFEAVTLV 180
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q ++ S P +++ D +++ L+D++ G D GT++ +V L + D+ EA+ Y
Sbjct: 181 QTGKVSS---FPIVLVGSD-YWRGLVDWIRGTLVDSGTISPGDV-DLLPVVDTAQEAVDY 235
Query: 183 LAE 185
+ +
Sbjct: 236 VVD 238
>gi|126457471|ref|YP_001076644.1| decarboxylase family protein [Burkholderia pseudomallei 1106a]
gi|167743790|ref|ZP_02416564.1| decarboxylase family protein [Burkholderia pseudomallei 14]
gi|167820979|ref|ZP_02452659.1| decarboxylase family protein [Burkholderia pseudomallei 91]
gi|167829331|ref|ZP_02460802.1| decarboxylase family protein [Burkholderia pseudomallei 9]
gi|167850806|ref|ZP_02476314.1| decarboxylase family protein [Burkholderia pseudomallei B7210]
gi|167916084|ref|ZP_02503175.1| decarboxylase family protein [Burkholderia pseudomallei 112]
gi|242313088|ref|ZP_04812105.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
1106b]
gi|254185948|ref|ZP_04892466.1| decarboxylase family protein [Burkholderia pseudomallei Pasteur
52237]
gi|254193662|ref|ZP_04900094.1| decarboxylase family protein [Burkholderia pseudomallei S13]
gi|254263337|ref|ZP_04954202.1| decarboxylase family protein [Burkholderia pseudomallei 1710a]
gi|254301006|ref|ZP_04968450.1| decarboxylase family protein [Burkholderia pseudomallei 406e]
gi|403523853|ref|YP_006659422.1| decarboxylase family protein [Burkholderia pseudomallei BPC006]
gi|126231239|gb|ABN94652.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
1106a]
gi|157810733|gb|EDO87903.1| decarboxylase family protein [Burkholderia pseudomallei 406e]
gi|157933634|gb|EDO89304.1| decarboxylase family protein [Burkholderia pseudomallei Pasteur
52237]
gi|169650413|gb|EDS83106.1| decarboxylase family protein [Burkholderia pseudomallei S13]
gi|242136327|gb|EES22730.1| conserved hypothetical protein TIGR00730 [Burkholderia pseudomallei
1106b]
gi|254214339|gb|EET03724.1| decarboxylase family protein [Burkholderia pseudomallei 1710a]
gi|403078920|gb|AFR20499.1| decarboxylase family protein [Burkholderia pseudomallei BPC006]
Length = 292
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 25 TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
T +G GPG+M+A +GA + G P G + ++ +PY+ E +F+ R
Sbjct: 145 TIITGGGPGIMEAANRGAHERGAPSIGLNITLPREQFP----NPYVTPELCFRFHYFAIR 200
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K L++ A A V PGG GT DE+FE+L L+Q +I P+P +++ +F
Sbjct: 201 KLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTRKIA---PLPVVLVG-RAF 248
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
++ +DF G D G + + A+L++ C++ E
Sbjct: 249 WRSAVDF-GFLVDEGMIDPCD-AALFRFCETADE 280
>gi|365096451|ref|ZP_09331043.1| hypothetical protein KYG_20033 [Acidovorax sp. NO-1]
gi|363413831|gb|EHL21020.1| hypothetical protein KYG_20033 [Acidovorax sp. NO-1]
Length = 287
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+ CT G GPG+M+A +GA G G + + P L + +
Sbjct: 139 RIYICT---GGGPGIMEAANRGAHDVGALNVGLNIALPHEQSGNRFISPTLSYKFH---- 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q ++ PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTKKAK---PVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L++F E+ GT++ ++ L+ D EA + FY L
Sbjct: 241 GTD-YWKRLINFEVLVEE-GTISAQDL-KLFHYTDDPKEAWGLIKSFYQL 287
>gi|187478879|ref|YP_786903.1| hypothetical protein BAV2389, partial [Bordetella avium 197N]
gi|115423465|emb|CAJ49999.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 190
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 41/204 (20%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P+Y S + +AR +G GPG+M+A KGA +AG G +
Sbjct: 10 DSPYYATSVAIAAALARE-GFAVIAGGGPGIMEAANKGAFEAGGTSVGLNIS-------- 60
Query: 64 SNFHPYLPLETY--------LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
LP E + L+ +FS+RK A V+LPGG GTLDE
Sbjct: 61 ------LPHEKHDNGFQTISLSFEYFSSRKVAFF--------MHSMAYVSLPGGFGTLDE 106
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICD 174
+FE L LIQ ++ P P +++ + ++ L+D+LG+ D G + ++ L+ + D
Sbjct: 107 LFEALTLIQTGKVP---PAPVVLVGSE-YWHGLIDWLGEQLRDQGMIGPRDL-DLFIVED 161
Query: 175 SNSEALSYLAEFYDLSSIDKRVHE 198
+ + ++ +F+ +K H+
Sbjct: 162 DPEKVVRHIVDFHR----NKHTHQ 181
>gi|145596263|ref|YP_001160560.1| hypothetical protein Strop_3751 [Salinispora tropica CNB-440]
gi|145305600|gb|ABP56182.1| conserved hypothetical protein 730 [Salinispora tropica CNB-440]
Length = 283
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 27/157 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVG-GFKVGKEAG- 59
PD P + ELGG +AR +G GPG+M A +GA +AG VG G ++ E G
Sbjct: 86 PDSPECRMAEELGGALARA-GYAVITGGGPGVMQAANRGASEAGGLSVGLGIELPFEQGI 144
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W ++ + R+F ARK + A A V LPGG GT+DE+FE
Sbjct: 145 NDW----------VDVAIDFRYFFARKTMFVKYA--------QAFVVLPGGFGTMDELFE 186
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
L L+Q G P ++M D +++ LLD+L D
Sbjct: 187 SLTLVQ---TGKVTRFPVVLMGSD-YWRGLLDWLRDT 219
>gi|194334648|ref|YP_002016508.1| hypothetical protein Paes_1849 [Prosthecochloris aestuarii DSM 271]
gi|194312466|gb|ACF46861.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
Length = 245
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 10 QSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+ + L E+ RLL + +G GPG+M+A KGA QAG GF + + SN
Sbjct: 72 REYALAEEMGRLLAAHGFAAITGGGPGVMEAANKGAQQAGGHSIGFNI--KLPNQQKSN- 128
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
P++ + +T +F RK + + A V LPGG GT+DE FE + LIQ
Sbjct: 129 -PFIDRDKLVTFDYFFVRKVMFLKYS--------QAFVVLPGGFGTMDEFFEAVTLIQ-T 178
Query: 127 RIGSELPVPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
R + PV + +Y D FY+ + D + C G + ++++ ++ + D + + +
Sbjct: 179 RKSARFPVILMGGSYWDGFYRWMHDTM--CHQKGYIGQEDLDFIF-LEDDPGKVIDIILG 235
Query: 186 FY 187
FY
Sbjct: 236 FY 237
>gi|107026838|ref|YP_624349.1| hypothetical protein Bcen_4494 [Burkholderia cenocepacia AU 1054]
gi|116691968|ref|YP_837501.1| hypothetical protein Bcen2424_3871 [Burkholderia cenocepacia
HI2424]
gi|170736038|ref|YP_001777298.1| hypothetical protein Bcenmc03_3656 [Burkholderia cenocepacia MC0-3]
gi|254248786|ref|ZP_04942106.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|105896212|gb|ABF79376.1| conserved hypothetical protein 730 [Burkholderia cenocepacia AU
1054]
gi|116649968|gb|ABK10608.1| conserved hypothetical protein 730 [Burkholderia cenocepacia
HI2424]
gi|124875287|gb|EAY65277.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|169818226|gb|ACA92808.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
Length = 252
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD PHY +L +IAR L + SG GPG+M+A KGA P G + E
Sbjct: 59 LKPDTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI--E 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A N + + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 113 LPHEQAGNHYQ----DISLRFRHFFTRKVTFVKNS--------DAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E+L LIQ ++ S L VP +++ + F++ LL + D + E L ++ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIILVGSE-FWQGLLQWFRDQLIPMGLINPEDMDLMQVIDDPD 216
Query: 178 EALSYLAEFYDLS 190
+ L + FY+ S
Sbjct: 217 QVLDAVLAFYEDS 229
>gi|149194630|ref|ZP_01871726.1| Predicted Rossmann fold nucleotide-binding protein [Caminibacter
mediatlanticus TB-2]
gi|149135374|gb|EDM23854.1| Predicted Rossmann fold nucleotide-binding protein [Caminibacter
mediatlanticus TB-2]
Length = 292
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
+ +G GPG+M+A +GA + G G + ++ +PY+ E +F+
Sbjct: 139 EVVIMTGGGPGIMEAANRGAYEVGAKSIGLNIQLPHEQFP----NPYVTPELCFQFHYFA 194
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK ++ A+ A+V PGG GTLDE+FE L LIQ R ++PV V+
Sbjct: 195 TRKMHFLERAI--------ALVVFPGGFGTLDELFETLTLIQT-RKNKKIPV---VLIGK 242
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++KL++F G + KD++ +++ ++ +A Y+ +Y+
Sbjct: 243 EYWQKLINF-EMLVSHGMIDKDDL-NIFVYKENAKDAFEYIKNWYE 286
>gi|341616212|ref|ZP_08703081.1| hypothetical protein CJLT1_14717 [Citromicrobium sp. JLT1363]
Length = 296
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 20/164 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GP +M+A +GA AG G + + + YL + + +F+ RK H
Sbjct: 151 TGGGPSIMEAGNRGASDAGGESIGLNIVLPHEQAPNTFVTAYLSFQFH----YFALRKMH 206
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AVV PGG GT DE FE+L L+Q G P+P L+ D F+
Sbjct: 207 FLLRA---------KAVVVFPGGFGTFDEFFELLTLVQ---TGKMKPLPILLFGKD-FWN 253
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
+++DF E+ A+D W C++ EA + +A+FY+L
Sbjct: 254 RVIDFDALAEEGTISARDLDLITW--CETAEEAWAAIAKFYELK 295
>gi|429769967|ref|ZP_19302051.1| TIGR00730 family protein [Brevundimonas diminuta 470-4]
gi|429185880|gb|EKY26850.1| TIGR00730 family protein [Brevundimonas diminuta 470-4]
Length = 259
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 16 GEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETY 75
GE + D +G GPG+M A +GA +AG P GF V ++ +P+ E
Sbjct: 98 GEPGEVRDNVIATGGGPGIMQAANQGAHEAGAPSIGFNVTLPHEQFP----NPWSTPELT 153
Query: 76 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVP 135
+F+ RK + A+R + A+V PGG GTLDE+FEIL L Q G P+P
Sbjct: 154 FQFHYFAMRK---MHLAMRAN-----ALVVFPGGFGTLDELFEILTLRQ---TGKAPPIP 202
Query: 136 FLVMNYDSFYKKLLDF 151
++ + +++++ +++F
Sbjct: 203 IVLFD-EAYWRSVVNF 217
>gi|198284772|ref|YP_002221093.1| hypothetical protein Lferr_2693 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|415995092|ref|ZP_11560317.1| hypothetical protein GGI1_17873 [Acidithiobacillus sp. GGI-221]
gi|198249293|gb|ACH84886.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
53993]
gi|339835556|gb|EGQ63218.1| hypothetical protein GGI1_17873 [Acidithiobacillus sp. GGI-221]
Length = 239
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 19/186 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+HP YL++ E+ +++ + SG GPG+M+A KGA + G+ +G
Sbjct: 56 PEHPWYLKAQEIAEKLSNA-GFSVISGGGPGVMEAANKGAFRGT----GYSIGLNIELPH 110
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY + ++ F +RK + AV A V +PGG GTLDE+ E L L
Sbjct: 111 EQHTNPYQ--DVSISFEHFYSRKVMFVKYAV--------AYVVMPGGFGTLDELAECLTL 160
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G +P +++ SF+K L+D+ D + E L + D E +S
Sbjct: 161 VQ---TGKTRKMPIILVE-SSFWKGLIDWWRDSMLTAGTIRQEDLDLITMIDDTDEVVSA 216
Query: 183 LAEFYD 188
+ Y+
Sbjct: 217 IFNHYE 222
>gi|429207273|ref|ZP_19198532.1| Decarboxylase family protein [Rhodobacter sp. AKP1]
gi|428189648|gb|EKX58201.1| Decarboxylase family protein [Rhodobacter sp. AKP1]
Length = 268
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA +AG G +G + Y+ + +F+ RK
Sbjct: 127 TGGGPGVMEAGNLGAHEAG----GQSIGLNIVLPHEQAPNAYVTPDLSFNFHYFAVRKMH 182
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AVV PGG GTLDEMFE L LIQ +R+ P+PFL+ + F++K
Sbjct: 183 FLMRA--------RAVVVFPGGFGTLDEMFESLTLIQTKRMK---PIPFLLFGRE-FWEK 230
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++++ E GT+A +++ L++ ++ EAL L E
Sbjct: 231 IINWQALAE-VGTIAPEDL-RLFRFVETADEALEALDE 266
>gi|398349966|ref|YP_006395430.1| hypothetical protein USDA257_c00690 [Sinorhizobium fredii USDA 257]
gi|390125292|gb|AFL48673.1| hypothetical protein USDA257_c00690 [Sinorhizobium fredii USDA 257]
Length = 299
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA G P G + + S Y+ E +F+ RK H
Sbjct: 143 TGGGPGVMEAGNRGAADVGAPSIGLNIVLPHEQAPNS----YVTPELSFNFHYFAIRKMH 198
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GTLDE+FE + L+Q R+ VP LV+ + F++
Sbjct: 199 FLLRA---------KAVAVFPGGFGTLDELFETMTLMQTGRLAL---VP-LVLFGEKFWR 245
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKR 195
+++F E +GT+A D++ L ++ EA +A FY+ ++D R
Sbjct: 246 SIINFEALAE-FGTIAPDDI-DLVHFVETAEEAWEIIARFYE--TVDPR 290
>gi|292493390|ref|YP_003528829.1| hypothetical protein Nhal_3413 [Nitrosococcus halophilus Nc4]
gi|291581985|gb|ADE16442.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
Length = 271
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 14 LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
L E R + CT G GPG+M+A +GA +A G + E+ +PY+ E
Sbjct: 106 LSDEERRFVVCT---GGGPGIMEAANRGASEAKGINVGLTISIPIEEFD----NPYITRE 158
Query: 74 TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP 133
+F RK A AV+ PGG GTLDE+FE+L L+Q +I LP
Sbjct: 159 LSFHFHYFFMRKFWFAYLA--------KAVIVFPGGFGTLDELFELLTLVQTGKIRKHLP 210
Query: 134 VPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
+ V+ ++ + ++F +G + ++ L++ DS EA ++L + +I+
Sbjct: 211 I---VLFGKEYWNETINFEALVH-YGNIDPQDLNLLYQ-TDSVDEAYTFLVDHLARYAIE 265
Query: 194 KR 195
+R
Sbjct: 266 ER 267
>gi|149928110|ref|ZP_01916357.1| hypothetical protein LMED105_15214 [Limnobacter sp. MED105]
gi|149823196|gb|EDM82433.1| hypothetical protein LMED105_15214 [Limnobacter sp. MED105]
Length = 245
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 35/198 (17%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP+Y L IAR L + + SG GPG+M+A KGA P G + + E
Sbjct: 63 DHPYYT----LTENIARALSDSGFAVISGGGPGIMEAANKGAHAGESPSVGLNI-ELPFE 117
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ + + + LT R F ARK A +A V +PGG GTLDEMFE L
Sbjct: 118 QSGNAYQ-----DISLTFRHFFARKVAFAKYA--------SAYVVMPGGFGTLDEMFEAL 164
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWGTVAKDEVASLWKICDS 175
LIQ + G +P+ ++ F+ L+D LG+ G ++ ++ L+++ ++
Sbjct: 165 TLIQTNK-GRRIPI---ILVGSKFWAGLIDWVKSHLLGE----GMISPGDM-DLFEVVET 215
Query: 176 NSEALSYLAEFYDLSSID 193
E L + FY+ + +
Sbjct: 216 PEEVLKCIFHFYEKRTFN 233
>gi|326381457|ref|ZP_08203151.1| hypothetical protein SCNU_00860 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199704|gb|EGD56884.1| hypothetical protein SCNU_00860 [Gordonia neofelifaecis NRRL
B-59395]
Length = 275
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 27/185 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P P Y E+ E+ RLL +G GPG M+A +GA +AG G +
Sbjct: 108 PGTPEY----EIARELGRLLGHEGFAVITGGGPGAMEATNRGAYEAGAESIGLNIELPFE 163
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ + +P+L L + R+F RK + A A V LPGG GTLDE+FE
Sbjct: 164 Q----HSNPWLTLS--MNFRYFFVRKTMFVKYA--------QAFVCLPGGFGTLDELFEA 209
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q +++ L P +++ + F+ L+D+L G E G V+ +V L ++ D+ +E
Sbjct: 210 LTLVQTKKV---LRFPIVLIGAE-FWGPLVDWLRGTLEAEGKVSPGDV-DLLQVVDTPAE 264
Query: 179 ALSYL 183
A+ +
Sbjct: 265 AVEII 269
>gi|152992798|ref|YP_001358519.1| decarboxylase family protein [Sulfurovum sp. NBC37-1]
gi|151424659|dbj|BAF72162.1| decarboxylase family protein [Sulfurovum sp. NBC37-1]
Length = 315
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSA 83
T +G GPG+M+A +GA G G + ++ +PY+ E +F+
Sbjct: 162 VTLMTGGGPGIMEAANRGAFDVGAKTIGLNITLPYEQYP----NPYITPELCFRLHYFAV 217
Query: 84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
RK + A A+V PGG GT+DE FE+L L+Q ++ P+P + + +S
Sbjct: 218 RKMHFLRRA--------KALVVFPGGFGTMDECFEVLTLVQTRKVD---PIPIIFVG-ES 265
Query: 144 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++K ++ F G E+ V E ++ ++ EA + ++Y
Sbjct: 266 YWKNMVYFEGFVEE--GVIDPEDMDIFTFVETAEEAWETILQWY 307
>gi|404450152|ref|ZP_11015138.1| hypothetical protein A33Q_12535 [Indibacter alkaliphilus LW1]
gi|403764351|gb|EJZ25256.1| hypothetical protein A33Q_12535 [Indibacter alkaliphilus LW1]
Length = 252
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+Y + E+G ++++ +G GPG+M+A +GA G GK G F
Sbjct: 69 YYQLAVEVGERVSQM-GFAVMTGGGPGIMEAANRGAKNFG--------GKSIGCNIILPF 119
Query: 67 --HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
HP L+ ++ ++F RK L S A V +PGG GTLDE FE L LIQ
Sbjct: 120 EQHPNPYLDKWMNFKYFFVRKVLL--------SKYSYAFVVMPGGFGTLDEFFEALTLIQ 171
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184
++ PV V+ F++ L D++ ++GT+ K ++ L+ + DS E +++
Sbjct: 172 T-KVMRRFPV---VLMCSDFHEHLFDYIQHLAEYGTIDKKDL-DLFLLTDSIEEMENHIR 226
Query: 185 EF 186
++
Sbjct: 227 KY 228
>gi|387906435|ref|YP_006336772.1| decarboxylase [Burkholderia sp. KJ006]
gi|387581327|gb|AFJ90041.1| Decarboxylase family protein [Burkholderia sp. KJ006]
Length = 330
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 18/169 (10%)
Query: 19 ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTC 78
AR +G GPG+M+A +GA + G P GF + E N PY+ +
Sbjct: 160 ARSARLAVVTGGGPGIMEAANRGAYERGAPSIGFNI--ELPREQRPN--PYITPSLCFSF 215
Query: 79 RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 138
+F+ RK L++ A A V PGG GT DE+FE+L L+Q +I P+P ++
Sbjct: 216 HYFAIRKLHLLERA--------KAAVFFPGGYGTFDELFEVLTLLQTRKIA---PLPVIL 264
Query: 139 MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ ++++++ +D L D G + + ++ L+ C++ E + +Y
Sbjct: 265 VG-EAYWRRAVD-LPFLADEGMIDRRDL-ELFTYCETAPEIWHAIGNWY 310
>gi|408379928|ref|ZP_11177519.1| lysine decarboxylase [Agrobacterium albertimagni AOL15]
gi|407746305|gb|EKF57830.1| lysine decarboxylase [Agrobacterium albertimagni AOL15]
Length = 292
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 18/156 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA + G P G + + A N PY+ E +F+ RK + A
Sbjct: 150 MEAGNRGAQEVGAPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 203
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
A+ PGG GTLDE FE + LIQ +R+ P+P L++ +F++ +++F
Sbjct: 204 ------KAITIFPGGFGTLDEFFETITLIQTKRMA---PIP-LILFSRAFWEDIVNFEA- 252
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
+GT+A D++ L++ ++ EA +A+FYDL+
Sbjct: 253 LAAFGTIAPDDL-KLFQFAETAEEAWKIIADFYDLN 287
>gi|378824666|ref|YP_005187398.1| hypothetical protein SFHH103_00069 [Sinorhizobium fredii HH103]
gi|365177718|emb|CCE94573.1| conserved hypothetical protein [Sinorhizobium fredii HH103]
Length = 299
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA G P G + + S Y+ E +F+ RK H
Sbjct: 143 TGGGPGVMEAGNRGAADVGAPSIGLNIVLPHEQAPNS----YVTPELSFNFHYFAIRKMH 198
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GTLDE+FE + L+Q R+ VP LV+ + F++
Sbjct: 199 FLLRA---------KAVAVFPGGFGTLDELFETMTLMQTGRLAL---VP-LVLFGEKFWR 245
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKR 195
+++F E +GT+A +++ L D+ EA +A FY+ ++D R
Sbjct: 246 SIINFEALAE-FGTIAPNDI-DLVHFVDTAEEAWEIIARFYE--TVDPR 290
>gi|77464713|ref|YP_354217.1| hypothetical protein RSP_1132 [Rhodobacter sphaeroides 2.4.1]
gi|77389131|gb|ABA80316.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 274
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA +AG G +G + Y+ + +F+ RK
Sbjct: 133 TGGGPGVMEAGNLGAYEAG----GQSIGLNIVLPHEQAPNAYVTPDLSFNFHYFAVRKMH 188
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AVV PGG GTLDEMFE L LIQ +R+ P+PFL+ + F++K
Sbjct: 189 FLMRA--------RAVVVFPGGFGTLDEMFESLTLIQTKRMK---PIPFLLFGRE-FWEK 236
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++++ E GT+A +++ L++ ++ EAL L E
Sbjct: 237 IINWQALAE-VGTIAPEDL-RLFRFVETADEALDALDE 272
>gi|126463553|ref|YP_001044667.1| hypothetical protein Rsph17029_2793 [Rhodobacter sphaeroides ATCC
17029]
gi|332559606|ref|ZP_08413928.1| hypothetical protein RSWS8N_11125 [Rhodobacter sphaeroides WS8N]
gi|126105217|gb|ABN77895.1| conserved hypothetical protein 730 [Rhodobacter sphaeroides ATCC
17029]
gi|332277318|gb|EGJ22633.1| hypothetical protein RSWS8N_11125 [Rhodobacter sphaeroides WS8N]
Length = 268
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA +AG G +G + Y+ + +F+ RK
Sbjct: 127 TGGGPGVMEAGNLGAHEAG----GQSIGLNIVLPHEQAPNAYVTPDLSFNFHYFAVRKMH 182
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AVV PGG GTLDEMFE L LIQ +R+ P+PFL+ + F++K
Sbjct: 183 FLMRA--------RAVVVFPGGFGTLDEMFESLTLIQTKRMK---PIPFLLFGRE-FWEK 230
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++++ E GT+A +++ L++ ++ EAL L E
Sbjct: 231 IINWQALAE-VGTIAPEDL-RLFRFVETADEALEALDE 266
>gi|255536498|ref|YP_003096869.1| hypothetical protein FIC_02374 [Flavobacteriaceae bacterium
3519-10]
gi|255342694|gb|ACU08807.1| hypothetical protein FIC_02374 [Flavobacteriaceae bacterium
3519-10]
Length = 252
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 19/194 (9%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ P+ P+Y + E+ +I + +G GPG+M+A KGA G G +G
Sbjct: 74 LKPEDPYYEMAVEIAEKITDI-GFGVITGGGPGIMEAGNKGARNGG----GKSIGLNIEL 128
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+F+PY+ + +F RK + + + +PGG GTLDE+ E +
Sbjct: 129 PFEQHFNPYIDKGFNMDFDYFFVRKVMFVKYS--------QGFIVMPGGFGTLDELTEAI 180
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
LIQ +IG + P+ V+ F+ LL+ F G +++ ++ L++I D+ +A
Sbjct: 181 TLIQTNKIG-KFPI---VLVGTEFWSGLLEWFQKTLLKTGMISEADL-KLYRIVDTADDA 235
Query: 180 LSYLAEFYDLSSID 193
++++ FYD +++
Sbjct: 236 VAHIKAFYDKYTVN 249
>gi|298709388|emb|CBJ31321.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 215
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 9 LQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASN 65
L+ ++ G L+ CT G GPG M+A KGA ++ + +G G + E G
Sbjct: 45 LKENKIKGRNQHLVVCT---GGGPGFMEAANKGASRVEGARNMGMGITLPFEEG------ 95
Query: 66 FHPYLPLETYLTCRFFSARKHGLI-DCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+ Y+ E +F RK ++ C A+V PGG GTLDE+FE+L L Q
Sbjct: 96 LNEYVTEELAFEFHYFFTRKFWMLYHCQ---------ALVVAPGGFGTLDELFEVLTLKQ 146
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184
++ LPV +Y ++K++++ E +GT+A+++V SL+ D EAL YL
Sbjct: 147 TGKVQKTLPVILFGKDY---WEKIINWQALVE-FGTIAQEDVDSLF-FTDDPQEALDYLV 201
Query: 185 EFYDLSSID 193
S I+
Sbjct: 202 GCLSKSGIN 210
>gi|343421957|emb|CCD18629.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 328
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 17 EIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL 76
++ R D +G GPG M+A KGA A P G +G + Y+
Sbjct: 170 QLERFHDLVVTTGGGPGFMEAANKGA--ATVP-GAVTMGMGISLPFEKGLNRYVTPNLAF 226
Query: 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
+F RK ++ SC AVV PGG GT+DE+FE+L L Q ++I S PV
Sbjct: 227 EFHYFFTRKFWMMY------SCR--AVVVAPGGFGTMDELFELLTLRQTKKIPS-FPV-- 275
Query: 137 LVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
V+ F+K ++++ E +GT++K EV S+ DS EAL+++ F++
Sbjct: 276 -VLFCTKFWKTVVNWEALVE-FGTISKQEVQSIC-FTDSVDEALAFIRVFFE 324
>gi|365920202|ref|ZP_09444551.1| TIGR00730 family protein [Cardiobacterium valvarum F0432]
gi|364578419|gb|EHM55624.1| TIGR00730 family protein [Cardiobacterium valvarum F0432]
Length = 223
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA-- 58
PDH Y Q+ E+ RL D + SG GPG+M+A KGA GK G VG
Sbjct: 39 PDHSVYQQTQEIA---KRLSDAGFSVVSGGGPGVMEAANKGAYAGGK---GLSVGVNIVL 92
Query: 59 -GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E +++ F + L F ARK + A A V +PGG GTLDE+
Sbjct: 93 PHEQSSNAFQ-----DISLLFSHFFARKVMFVRYA--------NAYVVMPGGFGTLDELA 139
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
EIL LIQ G +P +++ D F++ LL ++ G + E +L + D
Sbjct: 140 EILVLIQ---TGKTRKIPVILVGSD-FWRGLLAWMEATMVAGGLITAEDMALVSLVDDTE 195
Query: 178 EALSYLAEFY 187
+ + +FY
Sbjct: 196 AVIQIIRDFY 205
>gi|73540575|ref|YP_295095.1| hypothetical protein Reut_A0872 [Ralstonia eutropha JMP134]
gi|72117988|gb|AAZ60251.1| Conserved hypothetical protein 730 [Ralstonia eutropha JMP134]
Length = 239
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 90/197 (45%), Gaps = 27/197 (13%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL SG GPG+M+A KGA AGK VG
Sbjct: 57 DSPYYQRTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 108
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 109 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 158
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ L KI D E
Sbjct: 159 TLVQ---TGKSRSVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMKIVDEPHEV 213
Query: 180 LSYLAEFYDLSSIDKRV 196
L + E+Y+ DK +
Sbjct: 214 LEAVYEYYERRGGDKPI 230
>gi|372487148|ref|YP_005026713.1| hypothetical protein Dsui_0458 [Dechlorosoma suillum PS]
gi|359353701|gb|AEV24872.1| TIGR00730 family protein [Dechlorosoma suillum PS]
Length = 242
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ P+ P+Y +L EIAR L + SG GPG+M+A KGA P G +
Sbjct: 57 IKPESPYY----QLTEEIARKLSDAGFSVISGGGPGIMEAANKGAYHGKSPSIGLNIQLP 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +PY + + R F ARK + A +A V +PGG GTLDE+
Sbjct: 113 HEQMA----NPYQDISQ--SFRHFFARKFMFVKFA--------SAYVVMPGGFGTLDEVL 158
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E L LIQ G +P L++ ++ F++ LL++ D G V+ D++ L ++ D
Sbjct: 159 EALTLIQ---TGKSRKIP-LILVHEPFWRGLLEWFKDRLVGEGMVSPDDL-DLIQVIDEP 213
Query: 177 SEALSYLAEFYD 188
+ + + + Y+
Sbjct: 214 DQIVEAIFKHYE 225
>gi|255594307|ref|XP_002536064.1| conserved hypothetical protein [Ricinus communis]
gi|223521013|gb|EEF26320.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 22/173 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
+ T +G GPG+M+A +GA + G G +G +PY+ E +F+
Sbjct: 95 EMTIVTGGGPGIMEAANRGAYECG----GRSIGLNIILPMEQQPNPYITPELCFQFHYFA 150
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + + A+VA PGG GTLDE+FE L LIQ G VP L+ D
Sbjct: 151 LRKMHFLTRS--------KALVAFPGGYGTLDELFEALTLIQ---TGKARRVPVLLYGSD 199
Query: 143 SFYKKLL--DFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
F++KL+ D+L + T E L+ D+ +A + +FY L D
Sbjct: 200 -FWRKLVNWDYLLEM----TCINPEDLDLFHFVDTPQQAWRKIVDFYQLPDED 247
>gi|410629749|ref|ZP_11340445.1| hypothetical protein GARC_0330 [Glaciecola arctica BSs20135]
gi|410150673|dbj|GAC17312.1| hypothetical protein GARC_0330 [Glaciecola arctica BSs20135]
Length = 317
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 21/142 (14%)
Query: 15 GGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLET 74
G E RL+ T G GPG+M+A +GA +A G + + ++ +PY+ E
Sbjct: 157 GPEDCRLVIMT---GGGPGIMEAANRGAAEAQAETVGLNITLPSEQFP----NPYVTPEL 209
Query: 75 YLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPV 134
L +F+ RK + A A+VA PGG GTLDEMFE L LIQ +I P+
Sbjct: 210 CLQFHYFALRKLHFVLRA--------RALVAFPGGYGTLDEMFETLTLIQTRKIA---PM 258
Query: 135 PFLVMNYDSFYKKL--LDFLGD 154
P +++ F+KK +DFL D
Sbjct: 259 PVVLVG-KKFWKKAVNMDFLVD 279
>gi|325104136|ref|YP_004273790.1| hypothetical protein [Pedobacter saltans DSM 12145]
gi|324972984|gb|ADY51968.1| Conserved hypothetical protein CHP00730 [Pedobacter saltans DSM
12145]
Length = 234
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 19/186 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D+ +Y + ++G E+ +G GPG+M+A KGA +AG G + E
Sbjct: 59 DNKYYQMAVKIG-ELLTERGYGVITGGGPGIMEAGNKGAFEAGGKSVGLNI-----ELPF 112
Query: 64 SNFHP-YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
FH Y+ + + +F RK + + + LPGG GTLDE+FE + L
Sbjct: 113 EQFHNRYIDRDKLMEFDYFFVRKVMFMKYS--------QGYIVLPGGFGTLDELFEAITL 164
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQ +I P +++ D ++K LLD++ E +L++I D+ EA +
Sbjct: 165 IQTGKIAR---FPIVLVGSD-YWKGLLDWVEQTILKEKNISPEDLNLYRIVDTAEEAAEH 220
Query: 183 LAEFYD 188
+ FYD
Sbjct: 221 IFRFYD 226
>gi|394990044|ref|ZP_10382876.1| hypothetical protein SCD_02469 [Sulfuricella denitrificans skB26]
gi|393790309|dbj|GAB72515.1| hypothetical protein SCD_02469 [Sulfuricella denitrificans skB26]
Length = 233
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DH +Y +L EI+R L + SG GPG+M+A KGA P G + +
Sbjct: 51 DHAYY----KLTEEISRQLSDAGFSVISGGGPGIMEAANKGAFFGKSPSVGLNIQLPFEQ 106
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T +PY + T R F ARK + A TA V +PGG GTLDE+ E L
Sbjct: 107 HT----NPYQNISQ--TFRHFFARKVMFVKFA--------TAYVVMPGGFGTLDELMEAL 152
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
L+Q G +P +++ + +++ L+D+ D GT+ D++ L +I D +
Sbjct: 153 TLVQ---TGKTRKIP-IILVHGPYWRGLVDWFRDTLVKEGTINADDL-DLIQIIDEPKDV 207
Query: 180 LSYLAEFYD 188
+ + ++Y+
Sbjct: 208 VDAIFKYYE 216
>gi|332529116|ref|ZP_08405080.1| hypothetical protein HGR_04378 [Hylemonella gracilis ATCC 19624]
gi|332041339|gb|EGI77701.1| hypothetical protein HGR_04378 [Hylemonella gracilis ATCC 19624]
Length = 294
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA +AG VG N + Y+
Sbjct: 141 RLYICT---GGGPGIMEAANRGAHEAG----ALNVGLNITLPHEQNGNRYISPSLSFKFH 193
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+V PGG GTLDE+FE++ L+Q G VP +V+
Sbjct: 194 YFALRKMHFMMRA--------KALVVFPGGFGTLDELFEVMTLVQ---TGKSERVP-IVL 241
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191
+ F+++L+DF E+ KD L++I D+ A + +Y L +
Sbjct: 242 HGREFWQRLIDFDLLIEEGLISPKD--VELFRIVDTPEAAWEAIQGYYKLDT 291
>gi|429742973|ref|ZP_19276571.1| TIGR00730 family protein [Neisseria sp. oral taxon 020 str. F0370]
gi|429166983|gb|EKY08923.1| TIGR00730 family protein [Neisseria sp. oral taxon 020 str. F0370]
Length = 263
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 27/190 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+HP YL L +IAR+L + SG GPG+M+A KGA P G +
Sbjct: 79 PEHPDYL----LAEQIARILSDAGFSVISGGGPGIMEAANKGAFAGRSPAVGLNILLPHE 134
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ + +PY L +T R F RK + AV A V +PGG GTLDE+FE
Sbjct: 135 Q----HANPYQDLS--VTFRHFFPRKVMFVKHAV--------AYVVMPGGFGTLDELFES 180
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + P +++ SF++ L D++ D G +A ++ L++I D
Sbjct: 181 LTLVQT----GKTPHRPIILVGRSFWQGLADWMEDQLAGRGLIAPSDM-ELFEILDDAQA 235
Query: 179 ALSYLAEFYD 188
+ Y+
Sbjct: 236 VAERIFRHYE 245
>gi|319956708|ref|YP_004167971.1| hypothetical protein Nitsa_0963 [Nitratifractor salsuginis DSM
16511]
gi|319419112|gb|ADV46222.1| Conserved hypothetical protein CHP00730 [Nitratifractor salsuginis
DSM 16511]
Length = 318
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G G + ++ +PY+ E +F+ RK
Sbjct: 157 TGGGPGIMEAANRGAHDVGAKSVGLNIHLPHEQFP----NPYITPELCFQFHYFAIRKLH 212
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A A+V PGG GTLDE+FEIL L+Q + P+P +++ S++ K
Sbjct: 213 FFLRA--------KALVVYPGGFGTLDELFEILTLVQTHKTP---PIPVVIVG-KSYWNK 260
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
L++F E+ GT+A +++ ++ D+ +EA ++ ++++
Sbjct: 261 LINFDFLVEE-GTIAPEDL-EIFHFADNAAEAWKHILDWHE 299
>gi|410666038|ref|YP_006918409.1| hypothetical protein M5M_17755 [Simiduia agarivorans SA1 = DSM
21679]
gi|409028395|gb|AFV00680.1| hypothetical protein M5M_17755 [Simiduia agarivorans SA1 = DSM
21679]
Length = 291
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA +AG G + ++ +PY+ E +F+ RK
Sbjct: 150 TGGGPGIMEAANRGASEAGAKSIGLNIVLPHEQYP----NPYITPELCFRFHYFAMRKMH 205
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+V PGG GTLDE+FE L L+Q +++ P+P L+ F+++
Sbjct: 206 FLMRA--------KALVVFPGGFGTLDELFETLTLVQTKKVQ---PLPILIFG-KQFWQR 253
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L++F E G ++ +++A L++ +S +A + E
Sbjct: 254 LVNFEFLVEQ-GMISAEDLA-LFRYVESAEQAWDIIRE 289
>gi|221640627|ref|YP_002526889.1| hypothetical protein RSKD131_2528 [Rhodobacter sphaeroides KD131]
gi|221161408|gb|ACM02388.1| Hypothetical Protein RSKD131_2528 [Rhodobacter sphaeroides KD131]
Length = 274
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA +AG G +G + Y+ + +F+ RK
Sbjct: 133 TGGGPGVMEAGNLGAHEAG----GQSIGLNIVLPHEQAPNAYVTPDLSFNFHYFAVRKMH 188
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AVV PGG GTLDEMFE L LIQ +R+ P+PFL+ + F++K
Sbjct: 189 FLMRA--------RAVVVFPGGFGTLDEMFESLTLIQTKRMK---PIPFLLFGRE-FWEK 236
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++++ D GT++ +++ L++ ++ EAL L E
Sbjct: 237 IINWQA-LADVGTISPEDL-RLFRFVETADEALDALDE 272
>gi|329890084|ref|ZP_08268427.1| putative lysine decarboxylase family protein [Brevundimonas
diminuta ATCC 11568]
gi|328845385|gb|EGF94949.1| putative lysine decarboxylase family protein [Brevundimonas
diminuta ATCC 11568]
Length = 278
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 16/136 (11%)
Query: 16 GEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETY 75
GE + D +G GPG+M A +GA +AG P GF V ++ +P+ E
Sbjct: 117 GEPGEVRDNVIATGGGPGIMQAANQGAHEAGAPSIGFNVTLPHEQFP----NPWSTPELT 172
Query: 76 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVP 135
+F+ RK + A+R + A+V PGG GTLDE+FEIL L Q ++ P+P
Sbjct: 173 FQFHYFAMRK---MHLAMRAN-----ALVVFPGGFGTLDELFEILTLRQTDKAP---PIP 221
Query: 136 FLVMNYDSFYKKLLDF 151
++ + +++++ +++F
Sbjct: 222 IVLFD-EAYWRSVINF 236
>gi|410692493|ref|YP_003623114.1| putative lysine decarboxylase [Thiomonas sp. 3As]
gi|410693710|ref|YP_003624331.1| putative lysine decarboxylase [Thiomonas sp. 3As]
gi|294338917|emb|CAZ87257.1| putative lysine decarboxylase [Thiomonas sp. 3As]
gi|294340134|emb|CAZ88505.1| putative lysine decarboxylase [Thiomonas sp. 3As]
Length = 319
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 7 HYLQSFELGGEI--ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
+Y FELG I AR+ +G GPG M+A +GA +AG G + ++
Sbjct: 137 YYQIGFELGQMIGAARIPGLAVMTGGGPGGMEAANRGAFEAGAETLGLNISLPREQYP-- 194
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+PYL +F+ RK + A A+VALPGG GTLDE+F L LIQ
Sbjct: 195 --NPYLTPGLCFQFHYFALRKLHFMQRAA--------AIVALPGGFGTLDELFGALTLIQ 244
Query: 125 LERIGSELPVPFLVMNYDSFYKKL--LDFLGDCEDWGTVAKDEVASLWKICDSN 176
+ P+P +++ +S+++ + +DFL + G++ +++ W D+
Sbjct: 245 TRKSA---PIPIVLIG-ESYWRGVFNVDFLLEA---GSIDEEDARLFWFAEDAR 291
>gi|358446547|ref|ZP_09157092.1| putative uncharacterized protein [Corynebacterium casei UCMA 3821]
gi|356607508|emb|CCE55432.1| putative uncharacterized protein [Corynebacterium casei UCMA 3821]
Length = 275
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 20/197 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ P Y Q ELG ++ D +G GPG+M+A +GA +AG G VG
Sbjct: 96 EAPEYAQGVELGAKLVGE-DYAVVTGGGPGIMEAANRGAYEAG----GLSVGLGIELPFE 150
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ Y+ L + R+F ARK + + A V LPGG+GT+DE+FE+L ++
Sbjct: 151 QGLNKYVDLG--INFRYFFARKTMFLKYS--------RAFVCLPGGMGTMDELFEMLCMV 200
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++ + P+ + Y + L++++G+ + L+ + DS EA+ ++
Sbjct: 201 QTGKV-TNYPIVLIGTEY---WSGLVEWMGNTLVADGYINPQDMDLFLLTDSVDEAVEHI 256
Query: 184 AEFYDLSSIDKRVHEVN 200
+ D+RV +N
Sbjct: 257 VAAHK-EMTDERVRRLN 272
>gi|296134935|ref|YP_003642177.1| hypothetical protein Tint_0438 [Thiomonas intermedia K12]
gi|296135912|ref|YP_003643154.1| hypothetical protein Tint_1440 [Thiomonas intermedia K12]
gi|295795057|gb|ADG29847.1| conserved hypothetical protein [Thiomonas intermedia K12]
gi|295796034|gb|ADG30824.1| conserved hypothetical protein [Thiomonas intermedia K12]
Length = 319
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 7 HYLQSFELGGEI--ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
+Y FELG I AR+ +G GPG M+A +GA +AG G + ++
Sbjct: 137 YYQIGFELGQMIGAARIPGLAVMTGGGPGGMEAANRGAFEAGAETLGLNISLPREQYP-- 194
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+PYL +F+ RK + A A+VALPGG GTLDE+F L LIQ
Sbjct: 195 --NPYLTPGLCFQFHYFALRKLHFMQRAA--------AIVALPGGFGTLDELFGALTLIQ 244
Query: 125 LERIGSELPVPFLVMNYDSFYKKL--LDFLGDCEDWGTVAKDEVASLWKICDSN 176
+ P+P +++ +S+++ + +DFL + G++ +++ W D+
Sbjct: 245 TRKSA---PIPIVLIG-ESYWRGVFNVDFLLEA---GSIDEEDARLFWFAEDAR 291
>gi|255324446|ref|ZP_05365563.1| lysine decarboxylase family protein [Corynebacterium
tuberculostearicum SK141]
gi|255298352|gb|EET77652.1| lysine decarboxylase family protein [Corynebacterium
tuberculostearicum SK141]
Length = 254
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 22/191 (11%)
Query: 11 SFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH 67
S++LG E+ R L ++ +G GPG+M+A +GA +AG G VG +
Sbjct: 81 SYQLGVEVGRKLAEHSYAVITGGGPGIMEAANRGAHEAG----GLSVGLGIELPHEQGLN 136
Query: 68 PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLER 127
Y+ L L R+F ARK + + A + LPGG+GT+DE FE++ ++Q +
Sbjct: 137 EYVDLG--LNFRYFFARKTMFLKYS--------QAFICLPGGMGTMDEFFEVMCMVQTGK 186
Query: 128 IGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ + P ++M + ++ LL+++ + L+ + D EAL+++ + +
Sbjct: 187 VTN---YPIVLMGTE-YWSGLLEWMEKTLAASGYINEGDRELFLLTDDPDEALAHIIQRH 242
Query: 188 DLSSIDKRVHE 198
+ S DKR+ E
Sbjct: 243 QVMS-DKRIRE 252
>gi|406661904|ref|ZP_11070014.1| hypothetical protein B879_02032 [Cecembia lonarensis LW9]
gi|405554262|gb|EKB49372.1| hypothetical protein B879_02032 [Cecembia lonarensis LW9]
Length = 244
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAGEW 61
+HPHY+ + E+ ++ R +G GPG+M+A KGA + GK VG K+ EA
Sbjct: 68 NHPHYIMAEEISAKLVRH-GYGVITGGGPGIMEAANKGANSENGKSVGLCIKLPFEA--- 123
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ + ++ +F RK + V LPGG GTLDE+FE L
Sbjct: 124 ---KGNIYIDPDKLISFDYFFVRKVMFTKYS--------QGFVVLPGGFGTLDELFEALT 172
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEAL 180
LIQ +IG P+ V+ F+ LLD++ + +E L+ + D +EA+
Sbjct: 173 LIQTIKIG-RFPI---VLVGKEFWGGLLDWIKSTLLEQHAYINEEDLDLFYVVDDATEAV 228
Query: 181 SYLAEFY 187
+ EFY
Sbjct: 229 KVIDEFY 235
>gi|134291728|ref|YP_001115497.1| hypothetical protein Bcep1808_6342 [Burkholderia vietnamiensis G4]
gi|134134917|gb|ABO59242.1| conserved hypothetical protein 730 [Burkholderia vietnamiensis G4]
Length = 334
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 18/169 (10%)
Query: 19 ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTC 78
AR +G GPG+M+A +GA + G P GF + E N PY+ +
Sbjct: 164 ARSARLAIVTGGGPGIMEAANRGAYERGAPSIGFNI--ELPREQRPN--PYITPSLCFSF 219
Query: 79 RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 138
+F+ RK L++ A A V PGG GT DE+FE+L L+Q +I P+P ++
Sbjct: 220 HYFAIRKLHLLERA--------KAAVFFPGGYGTFDELFEVLTLLQTRKIA---PLPVIL 268
Query: 139 MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ ++++++ +D L D G + + ++ L+ C++ E + +Y
Sbjct: 269 VG-EAYWRRAVD-LPFLADEGMIDRRDL-ELFTYCETAPEIWHAIGNWY 314
>gi|89901017|ref|YP_523488.1| hypothetical protein Rfer_2235 [Rhodoferax ferrireducens T118]
gi|89345754|gb|ABD69957.1| conserved hypothetical protein 730 [Rhodoferax ferrireducens T118]
Length = 287
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA + G P G + + +PY+ +F+ RK
Sbjct: 144 TGGGPGIMEAANRGAHEMGAPSVGLNIAL----LHEQHPNPYITPTLSFKFHYFALRKMH 199
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+VA PGG GTLDE+FE++ L+Q + PVP ++ D ++K+
Sbjct: 200 FMMRA--------KALVAFPGGFGTLDELFEVITLVQTRKAK---PVPIVLFGTD-YWKR 247
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
L++ E+ A+D L+ D A + FY L
Sbjct: 248 LVNMNVLVEEGVISAQD--LDLFTYVDDADAAWEVIRNFYKL 287
>gi|451335320|ref|ZP_21905888.1| hypothetical protein C791_2129 [Amycolatopsis azurea DSM 43854]
gi|449422106|gb|EMD27491.1| hypothetical protein C791_2129 [Amycolatopsis azurea DSM 43854]
Length = 261
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ++GG +A +G GPG M+AV +GA +AG GF VG
Sbjct: 90 DHPEYELGRKIGGALADA-GFAVMTGGGPGAMEAVNRGANEAG----GFSVGLGIELPFE 144
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F ARK I + A + LPGG GTLDE+FE L L+
Sbjct: 145 QGLNPWVDLG--VNFRYFFARKTMFIKYS--------QAFICLPGGFGTLDELFEALTLV 194
Query: 124 QLERIGSELPVPFLVMNY 141
Q +++ ++ PV +Y
Sbjct: 195 QTKKV-TKFPVVLFGSDY 211
>gi|307726749|ref|YP_003909962.1| hypothetical protein BC1003_4742 [Burkholderia sp. CCGE1003]
gi|307587274|gb|ADN60671.1| Conserved hypothetical protein CHP00730 [Burkholderia sp. CCGE1003]
Length = 285
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 24/188 (12%)
Query: 13 ELGGEIAR------LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
ELG I R L T +G GPG+M+A +GA + VG VG A
Sbjct: 116 ELGRLIGRAEATPTLPKLTVVTGGGPGIMEAANRGAFE----VGAASVGLNISLPHAQLP 171
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PYL + L +F+ RK L++ A A V PGG GT DE+FE+L L+Q
Sbjct: 172 NPYLSPDLCLRFHYFAIRKLHLLERA--------KAAVFFPGGYGTCDELFEVLTLLQTG 223
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+I P+P +++ + F+++ +D + D G +A+ + A+L+ + ++ + + ++
Sbjct: 224 KIK---PLPVVLVG-ERFWRQAVD-VQFLIDEGMIAESD-AALFCVAETAPQIWRLVTQW 277
Query: 187 YDLSSIDK 194
Y+ +S K
Sbjct: 278 YERASSQK 285
>gi|146081777|ref|XP_001464342.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134068434|emb|CAM66724.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 332
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R D +G GPG M+A GA G +G + +P++
Sbjct: 171 RFHDLVVTTGGGPGFMEAANHGAESVP---GAVTMGMGISLPFENGLNPHVTKGLAFEFH 227
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK ++ SC A+V PGG GTLDEMFE+L L Q ++I S LPV V+
Sbjct: 228 YFFTRKFWMMY------SC--RAIVVAPGGFGTLDEMFELLTLKQTKKIPS-LPV---VL 275
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F++ ++++ D+G ++++E+ SL DS EA+ ++ +FY
Sbjct: 276 LGKEFWQTVVNWQA-LADYGVISQEEIDSLL-FTDSAEEAVEHIKDFY 321
>gi|284989670|ref|YP_003408224.1| hypothetical protein Gobs_1094 [Geodermatophilus obscurus DSM
43160]
gi|284062915|gb|ADB73853.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
43160]
Length = 279
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 35/190 (18%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-------- 55
D PHY +G +A +G GPG M+A +GA +AG G VG
Sbjct: 91 DSPHYASGVAIGAALAEA-GYAVITGGGPGAMEAANRGASEAG----GLSVGLGIELPFE 145
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+E EW ++ + R+F RK + A A V LPGG GTLDE
Sbjct: 146 QELNEW----------VDVGIAFRYFFVRKTMFVKYA--------QAFVILPGGFGTLDE 187
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L L+Q ++ + PV V+ ++ L+D+L KD L+ + D
Sbjct: 188 LFEALTLVQTRKV-TRFPV---VLFGSEYWSGLVDWLRTTMVPAATIKDSDLDLFTVTDD 243
Query: 176 NSEALSYLAE 185
E + + E
Sbjct: 244 VDEVVRIVQE 253
>gi|91774715|ref|YP_544471.1| hypothetical protein Mfla_0359 [Methylobacillus flagellatus KT]
gi|91708702|gb|ABE48630.1| conserved hypothetical protein 730 [Methylobacillus flagellatus KT]
Length = 243
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 25/189 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHP+Y +L EIARLL + SG GPG+M+A KGA + P G + E
Sbjct: 59 PDHPYY----KLTEEIARLLSDAGFSVISGGGPGIMEAANKGAYKGRSPSIGLNI--ELP 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
N PY + + F RK + A +A V +PGG GTLDE+ E
Sbjct: 113 HEQKGN--PYQDISQ--NFQHFFMRKVMFVKYA--------SAYVVMPGGFGTLDELMEA 160
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ + +P L++ ++ F++ +L ++ + + E L ++ D E
Sbjct: 161 LTLIQTAKT-RRIP---LILVHEPFWRGMLAWIKETLGGEGMISPEDLDLLQVIDKPHEI 216
Query: 180 LSYLAEFYD 188
+ + + Y+
Sbjct: 217 VEAIFKHYE 225
>gi|84489607|ref|YP_447839.1| hypothetical protein Msp_0803 [Methanosphaera stadtmanae DSM 3091]
gi|84372926|gb|ABC57196.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
Length = 178
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 12 FELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVGGFKVGKEAGEWTASNFHPYL 70
++LG EIA + G+M +V KG GK +G A EW Y
Sbjct: 22 YDLGKEIASKNHTLVFGSGNHGMMGSVAKGVYANHGKIIG------IAPEWMHEFEEIYP 75
Query: 71 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGS 130
+ S RK + V++D A + PGG+GTLDE FEI+ L +LE I S
Sbjct: 76 HCNKIFYTKSMSERKRLFL---VKSD-----AFIVTPGGIGTLDEFFEIITLKKLE-IHS 126
Query: 131 ELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+ P ++ N ++FY ++ + D + TV++D L+ I + E + YL +
Sbjct: 127 K---PIVIFNINNFYDSMIKMIEDMINENTVSRDS-TQLYHITTTVDETMDYLENY 178
>gi|375093659|ref|ZP_09739924.1| TIGR00730 family protein [Saccharomonospora marina XMU15]
gi|374654392|gb|EHR49225.1| TIGR00730 family protein [Saccharomonospora marina XMU15]
Length = 260
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 21/185 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ++GG +A +G GPG M+AV +GA +AG G +G
Sbjct: 89 DHPEYQLGRDIGGALANA-GFAAITGGGPGSMEAVNRGASEAG----GLSIGLGIELPFE 143
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F RK + A A + LPGG GTLDE+FE L L+
Sbjct: 144 QGLNPWVDLG--VNFRYFFTRKTMFVKYA--------QAFICLPGGFGTLDELFEALTLV 193
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q +++ ++ PV V+ +++ L D++ G G + D A+L + D +A+
Sbjct: 194 QTKKV-TKFPV---VLFGSAYWGGLYDWVRGTVLSEGKIG-DRDAALLHVTDDIDDAVGV 248
Query: 183 LAEFY 187
+ E Y
Sbjct: 249 VLEAY 253
>gi|260219740|emb|CBA26585.1| hypothetical protein Csp_E36730 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 295
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA + G G + + +PY+
Sbjct: 145 RLFICT---GGGPGIMEAANRGAHEMGALTPGLNITLPHEQRA----NPYVTPSLSFKFH 197
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE++ L+Q ++ PVP ++
Sbjct: 198 YFATRKMHFMMRA--------KALVAFPGGFGTLDELFEVITLVQTKKAK---PVPIILF 246
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L++ E+ G ++ +++ +L D +A + FY L
Sbjct: 247 GTD-YWKRLINIDVLVEE-GAISPEDL-NLLHYTDDPQDAWDTIRNFYGL 293
>gi|367470644|ref|ZP_09470327.1| hypothetical protein PAI11_36660 [Patulibacter sp. I11]
gi|365814282|gb|EHN09497.1| hypothetical protein PAI11_36660 [Patulibacter sp. I11]
Length = 246
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+GP P Y + ELG +A + T +G GPGLM+A +GA +A GG VG
Sbjct: 61 LGPGTPEYALARELGRRLAVDVRATVVTGGGPGLMEAANRGAHEA----GGRSVGLLIDL 116
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
++ + YL L + +F RK + + A VALPGG GT+DE+FE+L
Sbjct: 117 PFETHSNEYLDLA--IDFHYFFTRKVSFVRYS--------GAFVALPGGYGTMDELFEVL 166
Query: 121 ALIQLERI 128
L+Q +I
Sbjct: 167 CLVQTRKI 174
>gi|330824333|ref|YP_004387636.1| hypothetical protein Alide2_1731 [Alicycliphilus denitrificans
K601]
gi|329309705|gb|AEB84120.1| Conserved hypothetical protein CHP00730 [Alicycliphilus
denitrificans K601]
Length = 288
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 26/188 (13%)
Query: 7 HYLQSFELGGEI-ARL-----LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
HY Q+ G I AR D +G GPG+M+A +GA + G G +
Sbjct: 110 HYEQARRFSGLISARFQQQNRRDFVVVTGGGPGIMEAANRGAFEVGARSIGLNIT--LPH 167
Query: 61 WTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
A N PY+ + +F+ RK H L+ +VA PGG GTLDE+FE+
Sbjct: 168 EQAPN--PYMCPDLAFRFHYFALRKMHFLLHA---------KGLVAFPGGYGTLDELFEV 216
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ ++ +PV V+ +F+++++DF D G V+ ++ L+ D E
Sbjct: 217 LTLIQTRKM-QRVPV---VLVGRAFWRRVVDF-DLLLDEGYVSSSDL-DLFTCVDDAEEI 270
Query: 180 LSYLAEFY 187
+S L FY
Sbjct: 271 VSALERFY 278
>gi|319950854|ref|ZP_08024738.1| hypothetical protein ES5_14643 [Dietzia cinnamea P4]
gi|319435509|gb|EFV90745.1| hypothetical protein ES5_14643 [Dietzia cinnamea P4]
Length = 266
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 29/208 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG- 59
P P Y Q+ ELG ++ +G GPG M+A KGA +A G+ VG G ++ E G
Sbjct: 78 PGDPAYEQAVELGRALSEAGYAVV-TGGGPGQMEAANKGAWEADGQSVGLGIELPHEQGM 136
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
W H R+F RK + A V PGG GTLDE FE
Sbjct: 137 NRWVDLGLH----------FRYFFIRKTMFVKYT--------QAFVCTPGGFGTLDEFFE 178
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNS 177
+ L+Q ++I + P+ L ++ F+ L+D++ G + G ++ ++ L+ + DS
Sbjct: 179 AITLVQTDKI-TRFPIVLLGVD---FWSPLVDWIRGTLAEQGMISASDL-ELFLVTDSVP 233
Query: 178 EALSYLAEFYDLSSIDKRVHEVNLKSTH 205
EA+ ++ E + +++ E + H
Sbjct: 234 EAVEFIREAHHRAALTSEQREDLIGEEH 261
>gi|255262369|ref|ZP_05341711.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255104704|gb|EET47378.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 282
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 20/158 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA+ AG G VG + Y+ E +F+ RK H
Sbjct: 129 TGGGPGVMEAGNRGAIDAG----GRSVGLNIVLPFEQAPNEYVTPELCFNFHYFAIRKMH 184
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ D F+
Sbjct: 185 FLMRAA---------AITVFPGGFGTLDEMFETLTLIQTGRMEK---VPFLLFGKD-FWT 231
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184
K++++ D GT++ +++ L+ + D+ +EA+ +A
Sbjct: 232 KIINWEA-LSDAGTISAEDL-DLFVMVDTAAEAMDAIA 267
>gi|330469987|ref|YP_004407730.1| hypothetical protein VAB18032_00230 [Verrucosispora maris
AB-18-032]
gi|328812958|gb|AEB47130.1| hypothetical protein VAB18032_00230 [Verrucosispora maris
AB-18-032]
Length = 278
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 35/191 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P + +G +AR +G GPG+M+A +GA +AG + VG G ++ E G
Sbjct: 82 PDSPECQLAEAVGAALARA-GYAVITGGGPGVMEAANRGASEAGGRSVGLGIELPFEQGI 140
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
EW ++ + R+F ARK + A A V LPGG GTLDE+FE
Sbjct: 141 NEW----------VDLAIDFRYFFARKTMFVKYA--------QAFVVLPGGFGTLDELFE 182
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE----DWGTVAKDEVASLWKICD 174
L L+Q G P ++M D +++ LLD+L D G V D L ++ D
Sbjct: 183 ALTLVQ---TGKVTRFPVVLMGSD-YWRGLLDWLRDTMAVEGKIGPVDLD----LIRVTD 234
Query: 175 SNSEALSYLAE 185
+EA+ ++ E
Sbjct: 235 DIAEAVRHIVE 245
>gi|290957599|ref|YP_003488781.1| hypothetical protein SCAB_31221 [Streptomyces scabiei 87.22]
gi|260647125|emb|CBG70224.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 252
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y LG + +G GPG M+A KGA++AG G VG
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGAVEAG----GTSVGLGIELPFE 140
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L L+
Sbjct: 141 QGLNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALTLV 190
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ + P+ V+ +S++ L+D+L + A ++ +L+ + D EA++ +
Sbjct: 191 QTQKV-TRFPI---VLFGESYWSGLVDWLTNTLIAQGKAAEKDLTLFHVTDDVDEAVALV 246
Query: 184 AE 185
++
Sbjct: 247 SK 248
>gi|184200476|ref|YP_001854683.1| hypothetical protein KRH_08300 [Kocuria rhizophila DC2201]
gi|183580706|dbj|BAG29177.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 292
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 43/197 (21%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P HP Y ELG E+ R + + +G GPG+M+A +GA+ G G +
Sbjct: 91 PGHPEY----ELGRELGRQIGAAGYAVVTGGGPGVMEAANRGAVDVGAHSVGIGI----- 141
Query: 60 EWTASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVG 111
LP E +L R+F ARK + + VALPGG G
Sbjct: 142 ---------ELPHEQHLNHWVDLGINFRYFFARKTMFVKYS--------QGFVALPGGFG 184
Query: 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLW 170
TLDE+FE L L+Q +I + PV ++ ++ LLD++ G G VA+ ++ L
Sbjct: 185 TLDELFEALTLVQTGKI-TRFPV---ILVGTEYWGPLLDWITGTLVAGGKVAETDL-DLL 239
Query: 171 KICDSNSEALSYLAEFY 187
++ D+ E + LA +
Sbjct: 240 RVVDTAEEVVEILASVH 256
>gi|398012672|ref|XP_003859529.1| hypothetical protein, conserved [Leishmania donovani]
gi|322497745|emb|CBZ32821.1| hypothetical protein, conserved [Leishmania donovani]
Length = 332
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R D +G GPG M+A GA G +G + +P++
Sbjct: 171 RFHDLVVTTGGGPGFMEAANHGAESVP---GAVTMGMGISLPFENGLNPHVTKGLAFEFH 227
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK ++ SC A+V PGG GTLDEMFE+L L Q ++I S LPV V+
Sbjct: 228 YFFTRKFWMMY------SC--RAIVVAPGGFGTLDEMFELLTLKQTKKIPS-LPV---VL 275
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F++ ++++ D+G ++++E+ SL DS EA+ ++ +FY
Sbjct: 276 LGKEFWQMVVNWQA-LADYGVISQEEIDSLL-FTDSAEEAVEHIKDFY 321
>gi|401418073|ref|XP_003873528.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489759|emb|CBZ25019.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 332
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 17/168 (10%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R D +G GPG M+A GA A P G +G +P++
Sbjct: 171 RFHDLVVTTGGGPGFMEAANHGA--ASVP-GAVTMGMGISLPFEKGLNPHVTKGLAFEFH 227
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK ++ SC A+V PGG GTLDE+FE+L L Q ++I S LPV V+
Sbjct: 228 YFFTRKFWMMY------SC--RAIVVAPGGFGTLDELFELLTLKQTKKIPS-LPV---VL 275
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F++ ++++ D+G ++++E+ SL DS EA+ ++ +FY
Sbjct: 276 LDKEFWRTVVNWQA-LADYGVISQEEIDSLL-FTDSAEEAVEHIKDFY 321
>gi|282889783|ref|ZP_06298322.1| hypothetical protein pah_c004o165 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175934|ref|YP_004652744.1| lOG family protein [Parachlamydia acanthamoebae UV-7]
gi|281500357|gb|EFB42637.1| hypothetical protein pah_c004o165 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480292|emb|CCB86890.1| lOG family protein PA4923 [Parachlamydia acanthamoebae UV-7]
Length = 223
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ PD P+Y + E+ IA D +G GPG+M+A KGA + V G G
Sbjct: 45 LQPDTPYYSLAVEVARHIAER-DFAIITGGGPGIMEAANKGA----QSVQGKSCGLGINL 99
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ ++ + L R+F RK I A V LPGG GTLDE+FE L
Sbjct: 100 PMEDELNHFIDTKYKLQFRYFFVRKVMFIRYA--------QGYVFLPGGFGTLDELFEAL 151
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEA 179
LIQ ++I P P +M + +++ L+D++ D ++K ++ L I D+ E
Sbjct: 152 TLIQTQKIH---PFPIYLMGKE-YWEGLMDWMRSTVTDHKCISKSDL-DLINITDNPEEV 206
Query: 180 LSYLAEFY 187
+ + Y
Sbjct: 207 ANGIERHY 214
>gi|116250207|ref|YP_766045.1| lysine decarboxylase [Rhizobium leguminosarum bv. viciae 3841]
gi|424873425|ref|ZP_18297087.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. viciae WSM1455]
gi|115254855|emb|CAK05929.1| putative lysine decarboxylase family protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|393169126|gb|EJC69173.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. viciae WSM1455]
Length = 288
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ EA + FY+
Sbjct: 247 IINFDALAE-FGTIAPDDV-KLISFVDTAEEAWKIVQNFYE 285
>gi|408680504|ref|YP_006880331.1| hypothetical protein SVEN_4786 [Streptomyces venezuelae ATCC 10712]
gi|328884833|emb|CCA58072.1| hypothetical protein SVEN_4786 [Streptomyces venezuelae ATCC 10712]
Length = 249
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 29/188 (15%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKE 57
PD P Y E G I R L +G GPG M+A KGA +A G VG G ++ E
Sbjct: 82 PDSPEY----EAGVRIGRALVEAGFAVITGGGPGAMEAANKGAREAKGVSVGLGIELPFE 137
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
G +P++ + + R+F RK + A V LPGG+GTLDE+F
Sbjct: 138 QG------LNPHV--DIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELF 181
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E L L+Q ++ + P+ V+ ++K L+D+L D G A + L+ + D
Sbjct: 182 EALTLVQTRKV-TRFPI---VLFGTQYWKGLVDWLRDSVVAGGKASERDLLLFHVTDDVD 237
Query: 178 EALSYLAE 185
EA++ + +
Sbjct: 238 EAVALVTK 245
>gi|219849942|ref|YP_002464375.1| hypothetical protein Cagg_3081 [Chloroflexus aggregans DSM 9485]
gi|219544201|gb|ACL25939.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
Length = 243
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 91/189 (48%), Gaps = 27/189 (14%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD P Y + E ARLL T +G GPGLM+A KGA +AG GG VG
Sbjct: 64 PDSPIYAAA----TETARLLAEAGFTIITGGGPGLMEAANKGA-RAG---GGRSVGCTIE 115
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +P++ LE R+F RK + A A V PGG GTLDE+FE
Sbjct: 116 LPFETGANPFVDLEVRF--RYFFVRKIMFVKYA--------HAFVIFPGGFGTLDELFEA 165
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSE 178
L LIQ +I + P+ V+ F+K ++D+ GT+ + +V L ++CD +
Sbjct: 166 LTLIQTGKI-HDFPI---VLYGSEFWKGMIDWARTTLLANGTIDQADVNRL-QVCDDPQQ 220
Query: 179 ALSYLAEFY 187
+ + E Y
Sbjct: 221 ICTLIVESY 229
>gi|384918755|ref|ZP_10018822.1| decarboxylase family protein [Citreicella sp. 357]
gi|384467338|gb|EIE51816.1| decarboxylase family protein [Citreicella sp. 357]
Length = 280
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GAMQAG G +G + Y+ + +F+ RK
Sbjct: 128 TGGGPGVMEAGNLGAMQAG----GVSIGLNIVLPHEQAPNEYVTPDLCFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ +F++K
Sbjct: 184 FLMRA--------RAICVFPGGFGTLDEMFEALTLIQTGRMNR---VPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++++ G E+ GT++ +++ L++ ++ EA + + E
Sbjct: 232 IINW-GALEEAGTISPEDL-DLFRFVETADEATAVIEE 267
>gi|145589540|ref|YP_001156137.1| hypothetical protein Pnuc_1359 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047946|gb|ABP34573.1| conserved hypothetical protein 730 [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 285
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 25/172 (14%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GPG+M+A +GA +AG GF + + HP + L+ R
Sbjct: 136 KLHICT---GGGPGIMEAANRGAFEAGDQTIGFNISLPREQ------HPNSYISQGLSFR 186
Query: 80 F--FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
F F+ RK + A A+VA PGG G+ DE+FE+L L+Q ++ LP+P +
Sbjct: 187 FHYFALRKMHFMLRA--------RAIVAYPGGFGSFDELFEVLTLMQTHKV---LPIPVI 235
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++ +++++++F E +G + + ++ ++ ++ EA + ++Y L
Sbjct: 236 LVG-AGYWREMINFKRMVE-FGVIDEADMQTI-HFVETAPEAWKIIKDWYQL 284
>gi|456389063|gb|EMF54503.1| hypothetical protein SBD_4171 [Streptomyces bottropensis ATCC
25435]
Length = 252
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y LG + +G GPG M+A KGA++AG G VG
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGALEAG----GTSVGLGIELPFE 140
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L L+
Sbjct: 141 QGLNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALTLV 190
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ + P+ V+ +S++ L+D+L + A ++ +L+ + D EA++ +
Sbjct: 191 QTQKV-TRFPI---VLFGESYWGGLIDWLRNTLIAEGKAAEKDLTLFHVTDDVDEAVALV 246
Query: 184 AE 185
++
Sbjct: 247 SK 248
>gi|418940397|ref|ZP_13493762.1| Conserved hypothetical protein CHP00730 [Rhizobium sp. PDO1-076]
gi|375052811|gb|EHS49213.1| Conserved hypothetical protein CHP00730 [Rhizobium sp. PDO1-076]
Length = 292
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 18/156 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA + G P G + + A N PY+ E +F+ RK + A
Sbjct: 150 MEAGNRGASEVGAPSVGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 203
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
A+ PGG GTLDE FE + LIQ +R+ P+P L++ SF+ +++F G
Sbjct: 204 ------KAIAIFPGGFGTLDEFFEAVTLIQTKRMA---PIP-LILFSKSFWHGMINFDGL 253
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
E +GT+A +++ +L + ++ +A +A+FYDL+
Sbjct: 254 AE-FGTIAPEDL-NLLQFAETAEDAWRIVADFYDLN 287
>gi|227503776|ref|ZP_03933825.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
striatum ATCC 6940]
gi|227199600|gb|EEI79648.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
striatum ATCC 6940]
Length = 254
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 24/199 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
MG P Y +G +A+ + +G GPG+M+A +GA +A G VG G ++ E
Sbjct: 75 MGEGTPEYDLGVRVGEALAKS-EYAVITGGGPGVMEAANRGAYEADGLSVGLGIELPHEQ 133
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L L R+F ARK + + A + LPGG+GT+DE FE
Sbjct: 134 G------LNEYVDLG--LNFRYFFARKTMFLKYS--------QAFICLPGGMGTMDEFFE 177
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+L ++Q ++ + P ++M + ++ L+++L G E L+ + D E
Sbjct: 178 VLCMVQTGKVTN---YPIVLMGTE-YWSGLVEWLKSTLAAGGFINPEDLDLFLVTDDVDE 233
Query: 179 ALSYLAEFYDLSSIDKRVH 197
A++++ E + + S DKRV
Sbjct: 234 AVAHIVECHKVMS-DKRVR 251
>gi|94311561|ref|YP_584771.1| hypothetical protein Rmet_2625 [Cupriavidus metallidurans CH34]
gi|430809177|ref|ZP_19436292.1| hypothetical protein D769_22954 [Cupriavidus sp. HMR-1]
gi|93355413|gb|ABF09502.1| conserved hypothetical protein (family 730) [Cupriavidus
metallidurans CH34]
gi|429498321|gb|EKZ96831.1| hypothetical protein D769_22954 [Cupriavidus sp. HMR-1]
Length = 239
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL SG GPG+M+A KGA AGK VG
Sbjct: 57 DSPYYQKTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 108
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 109 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 158
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ L KI D E
Sbjct: 159 TLVQ---TGKSRSVP-VVMYGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMKIVDEPQEV 213
Query: 180 LSYLAEFYD 188
L + E+Y+
Sbjct: 214 LEAVYEYYE 222
>gi|222839671|gb|EEE77994.1| predicted protein [Populus trichocarpa]
Length = 315
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL + SG GPG+M+A KGA AGK VG
Sbjct: 133 DSPYYQKTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 184
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 185 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 234
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ L KI D E
Sbjct: 235 TLVQ---TGKSRSVP-VVMYGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMKIVDEPQEV 289
Query: 180 LSYLAEFYD 188
L + E+Y+
Sbjct: 290 LEAVYEYYE 298
>gi|227832818|ref|YP_002834525.1| hypothetical protein cauri_0990 [Corynebacterium aurimucosum ATCC
700975]
gi|262182693|ref|ZP_06042114.1| hypothetical protein CaurA7_01762 [Corynebacterium aurimucosum ATCC
700975]
gi|227453834|gb|ACP32587.1| hypothetical protein cauri_0990 [Corynebacterium aurimucosum ATCC
700975]
Length = 256
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
D P+Y LG RL++ +G GPG+M+A +GA +AG G VG
Sbjct: 78 DDPNYQLGVALG---RRLVEAKYAVITGGGPGIMEAANRGAHEAG----GLSVGLGIELP 130
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ L L R+F ARK + + A + LPGG+GT+DE FE++
Sbjct: 131 HEQGLNPYVDLG--LNFRYFFARKTMFLKYS--------QAFICLPGGMGTMDEFFEVMC 180
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
++Q ++ + P ++M + ++ L++++ G E L+ + D EA++
Sbjct: 181 MVQTGKVTN---YPIVLMGTE-YWSGLVEWMKKTLAEGGFISPEDLDLFLVTDDIDEAVA 236
Query: 182 YLAEFYDLSSIDKRVHE 198
++ + + S DKR+ E
Sbjct: 237 HILAAHKVMS-DKRLRE 252
>gi|171321672|ref|ZP_02910594.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
gi|171093052|gb|EDT38278.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
Length = 252
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 25/190 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D PHY +L +IAR L + SG GPG+M+A KGA P G + + E
Sbjct: 62 DTPHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-ELPHE 116
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
++F + L R F RK + + AV+ +PGG GTLDE+ E+L
Sbjct: 117 QAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELSEVL 163
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ ++ S L VP +++ + F++ LL + D + E +L ++ D + L
Sbjct: 164 TLIQTKK--SRL-VPIILVGSE-FWQGLLQWFRDQLIPAGLINPEDMNLMQVIDDPDQVL 219
Query: 181 SYLAEFYDLS 190
+ FY+ S
Sbjct: 220 DAVLAFYEDS 229
>gi|225022895|ref|ZP_03712087.1| hypothetical protein CORMATOL_02941 [Corynebacterium matruchotii
ATCC 33806]
gi|224944118|gb|EEG25327.1| hypothetical protein CORMATOL_02941 [Corynebacterium matruchotii
ATCC 33806]
Length = 254
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 27/185 (14%)
Query: 5 HPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG 59
HP +ELG + R L + + +G GPG+M++ +GA +A G VG G ++ KE G
Sbjct: 80 HPVGSPYYELGRTLGRKLVESQYAVITGGGPGVMESANRGAQEADGLSVGLGIELPKEQG 139
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ Y+ L + R+F ARK + + A V LPGG GTLDE+FE+
Sbjct: 140 ------INEYVDLG--VNFRYFFARKTMFLKYS--------QAFVCLPGGFGTLDELFEV 183
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSE 178
L ++Q ++ + P ++M D F++ L+ +L D G +A +++ L+ + DS E
Sbjct: 184 LCMVQTGKVTN---YPIVLMGVD-FWQPLVQWLTDRLVAEGMIAANDL-ELFLLTDSVDE 238
Query: 179 ALSYL 183
A++++
Sbjct: 239 AVAHI 243
>gi|70949588|ref|XP_744190.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524041|emb|CAH75177.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 345
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 4 DHPHYL-QSFEL--GGEIAR--LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGF--KVGK 56
+HP + ++FE G+I + ++ +G GPG M+A KG+ +A GF K+
Sbjct: 159 NHPLFKNKNFETQENGKIKQPNKINVAVCTGGGPGFMEAANKGSKEANGRSLGFSIKLPF 218
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
E G +PY+ +F RK L+ ++ A + +PGG GTLDE+
Sbjct: 219 EKGP------NPYIDENLSFVFHYFFTRKFWLVYLSL--------AFIIMPGGFGTLDEL 264
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
EILAL Q ++ E+P+ V+ F+K +++F E +G +++V SL+ + DS
Sbjct: 265 MEILALKQCKKFKREVPI---VLFGKQFWKSIVNFDMLVE-YGLAHQEDVDSLF-MTDSV 319
Query: 177 SEALSYLAEFYDLSS 191
EA + F S+
Sbjct: 320 DEAYECVINFLKNSN 334
>gi|326389128|ref|ZP_08210708.1| hypothetical protein Y88_3504 [Novosphingobium nitrogenifigens DSM
19370]
gi|326206359|gb|EGD57196.1| hypothetical protein Y88_3504 [Novosphingobium nitrogenifigens DSM
19370]
Length = 303
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA AG G + + P+L + + +F+ RK H
Sbjct: 156 SGGGPSIMEAANRGATDAGAETIGLNITLRHEQEPNPYVTPHLSFQFH----YFALRKMH 211
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE+FE+L LIQ G P+P L+ D ++
Sbjct: 212 FLLRA---------RAVAVFPGGFGTFDELFELLTLIQ---TGKMKPIPILLFGSD-YWD 258
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
++++F E+ G + D++ L+ ++ E +A+FY L + D
Sbjct: 259 RVVNFRAIAEE-GLIGFDDL-DLFHRVETAQEGWEKIADFYALETGD 303
>gi|218885277|ref|YP_002434598.1| hypothetical protein DvMF_0170 [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756231|gb|ACL07130.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 218
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 76/165 (46%), Gaps = 36/165 (21%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE--------TYLTCR 79
+G GPGLM+A KGA AG T+ H +LP+E T R
Sbjct: 75 TGGGPGLMEAGNKGAFDAGG--------------TSVGLHIHLPMEQGANQFVKTRCDFR 120
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK I A+ A V +PGGVGTLDE+ E L Q RI PF ++
Sbjct: 121 YFFVRKLMFIKYAM--------AYVVMPGGVGTLDELTEAFVLTQTHRIK-----PFPII 167
Query: 140 NYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Y S ++ LLD++ D ++E L+ + D+ + ++Y+
Sbjct: 168 LYKSDYWNGLLDWIRDKMVSYDFIREEEMELFTVLDTPEQVVAYI 212
>gi|163847864|ref|YP_001635908.1| hypothetical protein Caur_2310 [Chloroflexus aurantiacus J-10-fl]
gi|222525737|ref|YP_002570208.1| hypothetical protein Chy400_2488 [Chloroflexus sp. Y-400-fl]
gi|163669153|gb|ABY35519.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
gi|222449616|gb|ACM53882.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
Length = 240
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 17 EIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
E ARLL T +G GPGLM+A KGA +AG GG VG + +P++ LE
Sbjct: 71 ETARLLAQAGFTIITGGGPGLMEAANKGA-RAG---GGRSVGCTIELPFETGANPFVDLE 126
Query: 74 TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP 133
R+F RK + A A V PGG GTLDE+FE L LIQ +I + P
Sbjct: 127 VRF--RYFFIRKIMFVKYA--------QAFVIFPGGFGTLDELFEALTLIQTGKI-HDFP 175
Query: 134 VPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
V ++ F++ +LD+ + GT+A+ ++ L ICD + +++ + Y
Sbjct: 176 V---ILYGSDFWQGMLDWARNTLLAHGTIAQTDIDRLL-ICDDPQQICAHVVQSYQ 227
>gi|452952069|gb|EME57504.1| lysine decarboxylase [Amycolatopsis decaplanina DSM 44594]
Length = 261
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 21/185 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ++GG +A +G GPG M+AV +GA +AG G VG
Sbjct: 90 DHPEYELGRKIGGALANA-GFAVMTGGGPGAMEAVNRGANEAG----GISVGLGIELPFE 144
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F ARK I + A + LPGG GTLDE+FE L L+
Sbjct: 145 QGLNPWVDLG--VNFRYFFARKTMFIKYS--------QAFICLPGGFGTLDELFEALTLV 194
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q +++ ++ PV V+ ++ L D++ G G + + ++ L + D +A+
Sbjct: 195 QTKKV-TKFPV---VLFGSDYWGGLYDWIAGSLLGEGKIGQKDL-ELLHVTDDIEDAVRV 249
Query: 183 LAEFY 187
+ E Y
Sbjct: 250 VQESY 254
>gi|86356076|ref|YP_467968.1| hypothetical protein RHE_CH00419 [Rhizobium etli CFN 42]
gi|86280178|gb|ABC89241.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 341
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 198 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 253
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F+++
Sbjct: 254 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRR 301
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 302 IINFEALAE-FGTIAPDDV-KLISFVDTADAAWKIVQDFYE 340
>gi|344201172|ref|YP_004785498.1| hypothetical protein Acife_3100 [Acidithiobacillus ferrivorans SS3]
gi|343776616|gb|AEM49172.1| Conserved hypothetical protein CHP00730 [Acidithiobacillus
ferrivorans SS3]
Length = 239
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+HP YL++ E+ +++ + SG GPG+M+A KGA + G+ +G
Sbjct: 56 PEHPWYLKTQEIAEKLSNA-GFSVISGGGPGVMEAANKGAFRGT----GYSIGLNIELPH 110
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY + ++ F +RK + AV A V +PGG GTLDE+ E L L
Sbjct: 111 EQHTNPYQ--DVSISFEHFYSRKVMFVKYAV--------AYVVMPGGFGTLDELAECLTL 160
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G +P +++ SF+K L+D+ + + E +L + D E +S
Sbjct: 161 VQ---TGKTRKMPIILVE-SSFWKGLIDWWRESMLTAGTIRPEDLNLITMIDDTDEVVSA 216
Query: 183 LAEFYD 188
+ Y+
Sbjct: 217 IFNHYE 222
>gi|218508527|ref|ZP_03506405.1| hypothetical protein RetlB5_13609 [Rhizobium etli Brasil 5]
Length = 291
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 148 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 203
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F+++
Sbjct: 204 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRR 251
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 252 IINFEALAE-FGTIAPDDV-KLISFVDTADAAWKIVQDFYE 290
>gi|190890092|ref|YP_001976634.1| hypothetical protein RHECIAT_CH0000462 [Rhizobium etli CIAT 652]
gi|190695371|gb|ACE89456.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 341
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 198 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 253
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F+++
Sbjct: 254 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRR 301
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 302 IINFEALAE-FGTIAPDDV-KLISFVDTADAAWKIVQDFYE 340
>gi|298528313|ref|ZP_07015717.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511965|gb|EFI35867.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 239
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 37/203 (18%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVGGFKVGKEAG 59
+ PD +Y ++++ ++R +G GPG+M+A KGA A G VG
Sbjct: 49 LNPDDEYYRMAYDISNSLSRS-GFNIITGGGPGIMEAGNKGAYDAQGNSVG--------- 98
Query: 60 EWTASNFHPYLPLETY------LTC--RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVG 111
H LP E L C R+F RK I A A V +PGG+G
Sbjct: 99 ------LHIKLPFEQKANDYINLRCDFRYFFVRKVMFIKYA--------KAYVVMPGGLG 144
Query: 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWK 171
T+DE+ E L L+Q RI P P +++ D F+ LL+++ + K SL+
Sbjct: 145 TMDELLETLVLMQTRRIK---PFPVILVGRD-FWDGLLNWMTEQMVSRGYMKKSDFSLFC 200
Query: 172 ICDSNSEALSYLAEFYDLSSIDK 194
+ D+ E + + DL S K
Sbjct: 201 MADTADEVVDLIKNKVDLHSFQK 223
>gi|441500066|ref|ZP_20982236.1| hypothetical protein C900_04919 [Fulvivirga imtechensis AK7]
gi|441436157|gb|ELR69531.1| hypothetical protein C900_04919 [Fulvivirga imtechensis AK7]
Length = 262
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 26/190 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+H +Y + E+ ++ R SG GPG+M+A KGA K GG VG
Sbjct: 85 PEHKYYKMAEEIAAKLVRH-GYGVISGGGPGIMEAANKGA----KSEGGKSVGLNIILPF 139
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ ++ + +T +F RK + + + +PGG GTLDE+FE L L
Sbjct: 140 EQKGNDFIDADKLITFDYFFVRKVMFVKYS--------QGFIVMPGGFGTLDELFEALTL 191
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDF-----LGDCEDWGTVAKDEVASLWKICDSNS 177
IQ ++IG + P+ V+ ++ L+D+ L C + +E L+K+ ++ +
Sbjct: 192 IQTKKIG-KFPI---VLVGKEYWGGLIDWIKTTMLQACNN----VHEEDLKLFKVVETEA 243
Query: 178 EALSYLAEFY 187
EA+ + +FY
Sbjct: 244 EAVEAIDDFY 253
>gi|332283707|ref|YP_004415618.1| hypothetical protein PT7_0454 [Pusillimonas sp. T7-7]
gi|330427660|gb|AEC18994.1| hypothetical protein PT7_0454 [Pusillimonas sp. T7-7]
Length = 208
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 35/158 (22%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P+Y + LG +A+ T +G GPG+M+A KGA +AG G +
Sbjct: 28 PDSPYYALAEALGSRLAKA-GLTVIAGGGPGIMEAANKGAFEAGGNSIGLNIN------- 79
Query: 63 ASNFHPYLPLETY--------LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP ET L +F +RK A +ALPGG GTLD
Sbjct: 80 -------LPHETKNNRYQTHSLVFDYFYSRKATFF--------MHSAAYIALPGGYGTLD 124
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
E+FE++ L+Q ++ P P +++ + F+ L+D++
Sbjct: 125 ELFEVMTLVQTRKVP---PAPIILIGTE-FWAGLIDWI 158
>gi|87198502|ref|YP_495759.1| hypothetical protein Saro_0477 [Novosphingobium aromaticivorans DSM
12444]
gi|87134183|gb|ABD24925.1| conserved hypothetical protein 730 [Novosphingobium aromaticivorans
DSM 12444]
Length = 292
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA +AG G + + S P+L + + +F+ RK H
Sbjct: 147 SGGGPSIMEAANRGAQEAGAESIGLNIVLPHEQAPNSFVTPHLSFQFH----YFALRKMH 202
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ G P+P L+ D ++
Sbjct: 203 FLLRA---------RAVAVFPGGFGTFDEFFEMLTLIQ---TGKMKPIPILLFGKD-YWS 249
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ G + +++ L+ ++ EA ++ +FYDL
Sbjct: 250 RVVNFEALAEE-GVINFEDL-ELFTPVETADEAWKHIVDFYDL 290
>gi|88811282|ref|ZP_01126538.1| hypothetical protein NB231_10778 [Nitrococcus mobilis Nb-231]
gi|88791821|gb|EAR22932.1| hypothetical protein NB231_10778 [Nitrococcus mobilis Nb-231]
Length = 244
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+HP Y +L EIA L + SG GPG+M+A +GA P G + + E
Sbjct: 62 NHPWY----KLAEEIAYALSQAGFSVVSGGGPGVMEAANRGAFAGKSPSIGLNI-QLPQE 116
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T + + + L R F +RK + A +A V LPGG GTLDE+ EIL
Sbjct: 117 QTGNAYQ-----DIALHFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELAEIL 163
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q G +P +++ + F+ L+D+ D E +L+K+ D S +
Sbjct: 164 TLVQ---TGKTRRIP-IILVHTPFWDGLIDWFRDTLVAQGAIDPEDLTLFKVLDEPSAVV 219
Query: 181 SYLAEFYD 188
+ +FY+
Sbjct: 220 DAIFDFYE 227
>gi|237838873|ref|XP_002368734.1| lysine decarboxylase domain-containing protein [Toxoplasma gondii
ME49]
gi|211966398|gb|EEB01594.1| lysine decarboxylase domain-containing protein [Toxoplasma gondii
ME49]
gi|221481372|gb|EEE19766.1| lysine decarboxylase domain-containing protein, putative
[Toxoplasma gondii GT1]
gi|221502093|gb|EEE27839.1| lysine decarboxylase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 361
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 28 SGAGPGLMDAVTKGAMQA--GKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
+G GPGLM+A +GA + + +G G + E G + Y+ + ++ AR
Sbjct: 196 TGGGPGLMEAANRGASEVPGARTIGMGITLPFEGG------LNRYITKDLGFEFQYLFAR 249
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K +I+ A+ V+A PGG GTLDE+ E+LAL Q ++ ++P+ L Y
Sbjct: 250 KFWMINTAL--------GVIAAPGGFGTLDELMEVLALKQSNKLKRDMPIVLLGKTY--- 298
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+ ++ F E +GT+++ + L+ I D EA YL F
Sbjct: 299 WTSIISFDKMVE-FGTISQSDCDKLF-ITDDEDEAFEYLRSF 338
>gi|160900167|ref|YP_001565749.1| hypothetical protein Daci_4735 [Delftia acidovorans SPH-1]
gi|160365751|gb|ABX37364.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
Length = 289
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA G P G + + N + ++ +
Sbjct: 139 RLYICT---GGGPGIMEAANRGAHDVGAPSIGLNIELPHEQ----NGNRFISPDLSFKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q G VP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLMQ---TGKTHSVPVILF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ F+K+LL+ E+ GT++ ++ L++ D EA + + +F+
Sbjct: 241 GTE-FWKRLLNIDLMIEE-GTISPKDL-QLFRYTDDPVEAWALIKQFH 285
>gi|88802446|ref|ZP_01117973.1| hypothetical protein PI23P_07650 [Polaribacter irgensii 23-P]
gi|88781304|gb|EAR12482.1| hypothetical protein PI23P_07650 [Polaribacter irgensii 23-P]
Length = 235
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA + GK G VG +++P++ + L +F RK
Sbjct: 83 TGGGPGIMEAGNKGAHR-GK---GTSVGLNIELPFEQHYNPWIDKDKNLEFHYFFVRKVM 138
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + V +PGG GT+DE+FE + LIQ +IG P+ V+ F+
Sbjct: 139 FVKYS--------QGFVVMPGGFGTMDELFEAITLIQTNKIG-RFPI---VLIGTKFWSG 186
Query: 148 LLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
LLD++ + E+ KD +L+++ D+ EA++++ +FY
Sbjct: 187 LLDWIKNTLIEEGNISEKD--LNLFRVVDTADEAIAHINKFY 226
>gi|347818064|ref|ZP_08871498.1| hypothetical protein VeAt4_02682, partial [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 285
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA AG G + + P L + +
Sbjct: 137 RLYICT---GGGPGIMEAANRGAHDAGALNVGLNIVLPHEQIDNRFISPSLSFKFH---- 189
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q + PVP ++
Sbjct: 190 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTRKAK---PVPIVLF 238
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L+ F E+ A+D L+ D +A + FY L
Sbjct: 239 GSD-YWKRLIHFDVMVEEGTICAQD--LDLFHYTDDPRQAWDLIRTFYRL 285
>gi|377820773|ref|YP_004977144.1| decarboxylase family protein [Burkholderia sp. YI23]
gi|357935608|gb|AET89167.1| decarboxylase family protein [Burkholderia sp. YI23]
Length = 259
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 19 ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTC 78
A L T +G GPG+M+A +GA ++G G + ++ +PY+ E L
Sbjct: 105 ATLPKLTVVTGGGPGIMEAANRGAFESGHASVGLNITLPHVQYP----NPYITPELCLRF 160
Query: 79 RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 138
+F+ RK L++ A+ A V PGG GT DE+FE+L L+Q +I P+P ++
Sbjct: 161 HYFAIRKLHLLERAM--------AAVFFPGGFGTCDELFEVLTLLQTGKIR---PLPVVL 209
Query: 139 MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+ ++F++K ++F ++ G V+ ++A L+ +S ++ + +Y+
Sbjct: 210 VG-EAFWRKAVNFDFLLQE-GLVSAADLA-LFSFAESAAQTWETVNRWYE 256
>gi|311745333|ref|ZP_07719118.1| methionyl-tRNA formyltransferase [Algoriphagus sp. PR1]
gi|126577871|gb|EAZ82091.1| methionyl-tRNA formyltransferase [Algoriphagus sp. PR1]
Length = 244
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DH HY + E+ ++ R +G GPG+M+A KGA G G + E
Sbjct: 69 DHKHYKTAEEIAAKLVRH-GYGVITGGGPGIMEAGNKGAHSEGGKSVGLNI-----ELPF 122
Query: 64 SNFHP-YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
F+ Y+ + +T +F RK + + V LPGG GT+DE FE L L
Sbjct: 123 EQFNNIYIDRDKLMTFDYFFVRKVMFVKYS--------QGFVVLPGGFGTMDEFFEALTL 174
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQ +IG P +++ D ++ LLD++ + + L+ I + +EA+
Sbjct: 175 IQTNKIGR---FPIVLVGKD-YWTGLLDWIKNTLLEHQYISETDLDLFCIVEDATEAVKV 230
Query: 183 LAEFY 187
+ EFY
Sbjct: 231 IDEFY 235
>gi|186475860|ref|YP_001857330.1| hypothetical protein Bphy_1095 [Burkholderia phymatum STM815]
gi|184192319|gb|ACC70284.1| conserved hypothetical protein [Burkholderia phymatum STM815]
Length = 275
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + +PY+ E +F+ RK
Sbjct: 127 TGGGPGIMEAANRGAYDCGAPSIGLNISLPRDQ----EPNPYITPELCFRLHYFAIRKLH 182
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L++ A A V PGG GT DE+FE+L L+Q ++I P+P +++ +S++++
Sbjct: 183 LLERA--------RAAVFFPGGFGTCDELFEVLTLLQTQKIK---PLPVVLVG-ESYWRR 230
Query: 148 LLDF 151
+DF
Sbjct: 231 AIDF 234
>gi|397689453|ref|YP_006526707.1| hypothetical protein MROS_0451 [Melioribacter roseus P3M]
gi|395810945|gb|AFN73694.1| hypothetical protein MROS_0451 [Melioribacter roseus P3M]
Length = 281
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 9 LQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
L S +L G R + CT G GPG+M+A KGA AG G + ++ +
Sbjct: 105 LWSKKLDGNGNRFIICT---GGGPGIMEAANKGAYMAGGHSIGLNISIPYEQFV----NK 157
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ + +F RK + A A++ PGG GT+DE+ E+L L+Q +++
Sbjct: 158 YVDHKLAFEFHYFFMRKLWFMYLA--------KALIVFPGGFGTMDELMEVLTLVQTKKV 209
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
++ + ++ ++++K++++F D GT++K+++ L+ C++ EA + +
Sbjct: 210 TKKMKI---IIYDEAYWKEIINF-DALIDHGTISKEDM-KLFDFCNTVDEAFDKITTHFK 264
Query: 189 LSSIDKR 195
++++
Sbjct: 265 KHFLNQK 271
>gi|167842180|ref|ZP_02468864.1| decarboxylase family protein [Burkholderia thailandensis MSMB43]
Length = 244
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD HY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 54 LKPDSAHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 108
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 109 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +V+ +F+ LL + D G + D++ +L K+ D
Sbjct: 156 EVLTLIQTKK--SRL-VP-IVLVGSAFWSGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 210
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 211 DQVLEAVLAFYE 222
>gi|395008647|ref|ZP_10392273.1| TIGR00730 family protein [Acidovorax sp. CF316]
gi|394313369|gb|EJE50417.1| TIGR00730 family protein [Acidovorax sp. CF316]
Length = 287
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+ CT G GPG+M+A +GA VG VG + + ++
Sbjct: 139 RIYVCT---GGGPGIMEAANRGAHD----VGALNVGLNIALPHEQSGNRFISPSLCYKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q G PVP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQ---TGKAKPVPIVLF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
D ++K+L++F E+ GT++ ++ L+ D EA + FY +
Sbjct: 241 GTD-YWKRLVNFDVLVEE-GTISPQDL-KLFHYTDDPQEAWDLIKAFYKI 287
>gi|417103880|ref|ZP_11961229.1| hypothetical protein RHECNPAF_340012 [Rhizobium etli CNPAF512]
gi|327191114|gb|EGE58162.1| hypothetical protein RHECNPAF_340012 [Rhizobium etli CNPAF512]
Length = 248
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 105 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 160
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F+++
Sbjct: 161 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRR 208
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 209 IINFEALAE-FGTIAPDDV-KLISFVDTADAAWKIVQDFYE 247
>gi|340621926|ref|YP_004740378.1| hypothetical protein Ccan_11550 [Capnocytophaga canimorsus Cc5]
gi|339902192|gb|AEK23271.1| UPF0717 protein YJL055W [Capnocytophaga canimorsus Cc5]
Length = 229
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G VG + +PY+ + L +F ARK
Sbjct: 76 TGGGPGIMEAGNKGARQGN----GSSVGLNIDLPFEQHDNPYIDRDKNLNFDYFFARKVM 131
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + A V +PGG GT+DE+FE + LIQ ++I + P+ ++ F+K
Sbjct: 132 FVKYS--------QAFVVMPGGFGTMDELFEAITLIQTQKI-DKFPI---ILVGSEFWKG 179
Query: 148 LLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
L+D+ +++ ++ +++ L+K+ D+ E + + +FY
Sbjct: 180 LVDWFQKTLLDEFQNISPEDMF-LFKVVDTADEVVDIIEKFY 220
>gi|227820656|ref|YP_002824626.1| lysine decarboxylase [Sinorhizobium fredii NGR234]
gi|227339655|gb|ACP23873.1| conserved hypothetical protein, possible lysine decarboxylase
[Sinorhizobium fredii NGR234]
Length = 299
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA G P G + + S Y+ E +F+ RK H
Sbjct: 143 TGGGPGVMEAGNRGAADVGAPSIGLNIVLPHEQAPNS----YVTPELSFNFHYFAIRKMH 198
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GTLDE+FE + L+Q R+ VP LV+ + F++
Sbjct: 199 FLLRA---------KAVAVFPGGFGTLDELFETMTLMQTGRLAL---VP-LVLFGEKFWR 245
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKR 195
+++F E +GT+A +++ L ++ EA +A FY+ ++D R
Sbjct: 246 SIINFEALAE-FGTIAPNDI-DLVHFVETAEEAWEIIARFYE--TVDPR 290
>gi|420240708|ref|ZP_14744910.1| putative Rossmann fold nucleotide-binding protein [Rhizobium sp.
CF080]
gi|398075463|gb|EJL66576.1| putative Rossmann fold nucleotide-binding protein [Rhizobium sp.
CF080]
Length = 288
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 18/155 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA AG P G + + A N Y+ E +F+ RK + A
Sbjct: 150 MEAGNRGAADAGAPSIGLNIMLPHEQ--APN--RYVTPELSFNFHYFAIRKMHFLMRA-- 203
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDEMFE L LIQ +R+ +P L++ ++F++ +++F G
Sbjct: 204 ------KAVVVFPGGFGTLDEMFEALTLIQTKRM-ERIP---LILFSEAFWRGIINF-GA 252
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++GT+A D++ ++ ++ EA +++FYD+
Sbjct: 253 LAEFGTIAPDDL-NVINFVETAEEAWKIISDFYDI 286
>gi|424905513|ref|ZP_18329016.1| hypothetical protein A33K_16900 [Burkholderia thailandensis MSMB43]
gi|390928406|gb|EIP85810.1| hypothetical protein A33K_16900 [Burkholderia thailandensis MSMB43]
Length = 249
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD HY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 59 LKPDSAHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 113
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 114 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 160
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +++ +F+ LL + D G + D++ +L K+ D
Sbjct: 161 EVLTLIQTKK--SRL-VPIVLVG-SAFWSGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 215
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 216 DQVLEAVLAFYE 227
>gi|333913763|ref|YP_004487495.1| hypothetical protein DelCs14_2121 [Delftia sp. Cs1-4]
gi|333743963|gb|AEF89140.1| Conserved hypothetical protein CHP00730 [Delftia sp. Cs1-4]
Length = 289
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
RL CT G GPG+M+A +GA G P G + + N + ++ +
Sbjct: 139 RLYICT---GGGPGIMEAANRGAHDVGAPSIGLNIELPHEQ----NGNRFISPDLSFKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE+L L+Q G VP ++
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLMQ---TGKTHSVPVILF 240
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ F+K+LL+ E+ GT++ ++ L++ D EA + + +F+
Sbjct: 241 GTE-FWKRLLNIDLMIEE-GTISPKDL-QLFRYTDDPVEAWALIKQFH 285
>gi|339326742|ref|YP_004686435.1| rossmann fold nucleotide-binding protein [Cupriavidus necator N-1]
gi|338166899|gb|AEI77954.1| rossmann fold nucleotide-binding protein [Cupriavidus necator N-1]
Length = 239
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 27/197 (13%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL SG GPG+M+A KGA AGK VG
Sbjct: 57 DSPYYQRTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 108
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 109 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 158
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ L KI D E
Sbjct: 159 TLVQ---TGKSRSVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMKIVDEPHEV 213
Query: 180 LSYLAEFYDLSSIDKRV 196
L + ++Y+ DK +
Sbjct: 214 LEAVYDYYEQRGGDKPI 230
>gi|386774453|ref|ZP_10096831.1| hypothetical protein BparL_11734 [Brachybacterium paraconglomeratum
LC44]
Length = 267
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+G HP Y + +G IA +G GPG+M+A +GA +AG G VG
Sbjct: 76 LGEGHPDYECARRIGAGIAER-GYAVITGGGPGIMEAGNRGAQEAG----GVSVGLGIEL 130
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY+ L + R+F ARK + + + V +PGG GT DE+FE L
Sbjct: 131 PHEQGLNPYVDLG--VDFRYFFARKTMFVKYS--------SGFVVMPGGFGTFDELFEAL 180
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
L+Q +I P +++ D +++ LLD++ D G ++ ++ L ++ D+ EA
Sbjct: 181 CLMQTHKIDM---FPVILVGRD-YWQGLLDWVSSAVVDRGMISLADL-DLVRVVDTAEEA 235
Query: 180 LSYLAE 185
L+ L E
Sbjct: 236 LAALGE 241
>gi|336323883|ref|YP_004603850.1| hypothetical protein Flexsi_1633 [Flexistipes sinusarabici DSM
4947]
gi|336107464|gb|AEI15282.1| Conserved hypothetical protein CHP00730 [Flexistipes sinusarabici
DSM 4947]
Length = 222
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DH Y ++ +G +A T +G GPG+M+A +GA +AG G +G
Sbjct: 56 DHNDYKKARLMGSMLADN-GITVLTGGGPGVMEAANRGATEAG----GQSIGVNIELPFE 110
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY + +T +F RK L+ A +A V PGG GT+DE+FE + LI
Sbjct: 111 QKPNPYA--KKVITFNYFFVRKVMLVKYA--------SAFVIFPGGFGTMDELFEAMTLI 160
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +I LP P +++ D ++ ++++L D + + K+ D E L +
Sbjct: 161 QTRKI---LPFPLILVEKD-YWSGMINWLEDKMVGNNFISESDLDIIKLIDDPPEILDCI 216
Query: 184 AEF 186
F
Sbjct: 217 KNF 219
>gi|392420278|ref|YP_006456882.1| hypothetical protein A458_06065 [Pseudomonas stutzeri CCUG 29243]
gi|390982466|gb|AFM32459.1| hypothetical protein A458_06065 [Pseudomonas stutzeri CCUG 29243]
Length = 288
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 26/188 (13%)
Query: 7 HYLQSFELGGEI-ARL-----LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
HY Q+ G I AR D +G GPG+M+A +GA + G G +
Sbjct: 110 HYEQARRFSGLISARFQQQNRRDFVVVTGGGPGIMEAANRGAFEVGARSIGLNI--TLPH 167
Query: 61 WTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
A N PY+ + +F+ RK H L+ +VA PGG GTLDE+FE+
Sbjct: 168 EQAPN--PYMCPDLAFRFHYFALRKMHFLLHA---------KGLVAFPGGYGTLDELFEV 216
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ ++ +PV V+ +F+++++DF D G V+ ++ L+ D E
Sbjct: 217 LTLIQTGKM-QRIPV---VLVGRAFWRRVVDF-DLLLDEGYVSPSDL-DLFTCVDEAEEI 270
Query: 180 LSYLAEFY 187
+S L FY
Sbjct: 271 VSALERFY 278
>gi|375139952|ref|YP_005000601.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359820573|gb|AEV73386.1| TIGR00730 family protein [Mycobacterium rhodesiae NBB3]
Length = 243
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 3 PDHPHYLQSFELGGEIARL-LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
PDHP+Y + L + L D T G GPG+M+A +GA AG V +G E +
Sbjct: 66 PDHPYYRLARTLATRLGTLSFDIIT--GGGPGIMEAANRGARDAG--VRSIGLGIELPQE 121
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
++N ++ L R+F RK I A +A V PGG GTLDE+FE L
Sbjct: 122 QSTNAF----VDLSLQFRYFFVRKLMFIRYA--------SAFVVFPGGFGTLDELFEALT 169
Query: 122 LIQLERI 128
LIQ E+I
Sbjct: 170 LIQTEKI 176
>gi|337280101|ref|YP_004619573.1| hypothetical protein Rta_24560 [Ramlibacter tataouinensis TTB310]
gi|334731178|gb|AEG93554.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 287
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GPG+M A +GA + G VG +PY+
Sbjct: 139 KLFICT---GGGPGIMQAANRGAHEGD----GISVGLSIALPMEEAANPYVTPALSFKFH 191
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+VA PGG GTLDE+FE++ L+Q R ++P+ V+
Sbjct: 192 YFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVITLVQ-TRKAKQVPI---VL 239
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++KKL++F D G ++ D++ L++ D A + FY L
Sbjct: 240 FGSEYWKKLINFEA-MVDEGVISPDDL-KLFEYADDPQRAWDVIRAFYRL 287
>gi|254292402|ref|YP_003058425.1| hypothetical protein Hbal_0026 [Hirschia baltica ATCC 49814]
gi|254040933|gb|ACT57728.1| conserved hypothetical protein [Hirschia baltica ATCC 49814]
Length = 259
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 17/152 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG P GF + + +PY + +F+ RK
Sbjct: 113 TGGGPGIMEAANRGAYDAGAPNIGFNITLPHEQVP----NPYSTPDLTFQFHYFAMRK-- 166
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A+R + A+V PGG GT+DE+FEIL L Q +I ++LP+ ++ + F+
Sbjct: 167 -MHLAMRAN-----ALVVFPGGFGTMDELFEILCLRQTMKITTKLPI---ILFDEEFWTS 217
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
+ L + D GT+ +++ L+ +S EA
Sbjct: 218 TFN-LQNLIDVGTINAEDL-DLFSYANSAEEA 247
>gi|386827724|ref|ZP_10114831.1| TIGR00730 family protein [Beggiatoa alba B18LD]
gi|386428608|gb|EIJ42436.1| TIGR00730 family protein [Beggiatoa alba B18LD]
Length = 240
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 25/189 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+HP+ ++ EIA+ L SG GPG+M+A KGA P G +
Sbjct: 59 PEHPYC----QMAEEIAKSLSDAGFAIISGGGPGIMEAANKGAFAGHSPSIGLNITL-PH 113
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E A+++ + L R F ARK + + +A V LPGG GTLDE+ E+
Sbjct: 114 EQKANSYQ-----DIALNFRHFFARKVMFVRYS--------SAYVVLPGGFGTLDELAEV 160
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q +I S +P+ + Y ++ L+D++ + E +L I DS
Sbjct: 161 LTLVQTHKIPS-IPIILVCREY---WQGLIDWMHNTLIVHRTISPEDMNLITIVDSAEMV 216
Query: 180 LSYLAEFYD 188
+ + ++Y+
Sbjct: 217 VKTIFDYYE 225
>gi|358635638|dbj|BAL22935.1| hypothetical protein AZKH_0589 [Azoarcus sp. KH32C]
Length = 256
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 25/189 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y+ L +I+RLL SG GPG+M+A KGA P G +
Sbjct: 73 PDHMYYI----LTEKISRLLSDAGFAVISGGGPGIMEAANKGAYFGKSPSIGLNIQLPME 128
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +SN PY + T + F ARK + A +A V LPGG GTLDE+ E
Sbjct: 129 Q--SSN--PYQDISQ--TFQHFFARKFMFVRFA--------SAYVVLPGGFGTLDELMEA 174
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ G +P +++ ++ F+K ++D+ D + + L ++ D +
Sbjct: 175 LTLIQ---TGKSRKIP-IILVHEPFWKGMIDWFRDRLVAERMINPDDLDLIQVIDKPEDV 230
Query: 180 LSYLAEFYD 188
+ + + Y+
Sbjct: 231 VEAIFKHYE 239
>gi|392964759|ref|ZP_10330179.1| hypothetical protein BN8_01209 [Fibrisoma limi BUZ 3]
gi|387846142|emb|CCH52225.1| hypothetical protein BN8_01209 [Fibrisoma limi BUZ 3]
Length = 276
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGE 60
PD+P+Y + E+ ++ R +G GPG+M+A KGA Q GK VG K+ E
Sbjct: 99 PDNPYYKMAEEIAAKLVRH-GYGVITGGGPGIMEAGNKGAFEQGGKSVGLNIKLPFEQ-- 155
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
SN Y+ + + FF RK + A + +PGG+GTLDE+FE +
Sbjct: 156 --HSNI--YIDPDKSINFDFFFVRKVMFVKYA--------QGFIVMPGGMGTLDELFEAI 203
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC---EDWGTVAKDEVASLWKICDSNS 177
LIQ ++I + P+ V+ S+++ L+D++ + ++ +D L + D+ +
Sbjct: 204 TLIQTKKI-ARFPI---VLVGRSYWQGLIDWITEVMLGQEHNINPED--MKLISLVDTPT 257
Query: 178 EALSYLAEFY 187
EA+ + FY
Sbjct: 258 EAVEVIDAFY 267
>gi|358457903|ref|ZP_09168118.1| Conserved hypothetical protein CHP00730 [Frankia sp. CN3]
gi|357078921|gb|EHI88365.1| Conserved hypothetical protein CHP00730 [Frankia sp. CN3]
Length = 306
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 81/190 (42%), Gaps = 35/190 (18%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y LGG +A +G GPG M+AV +GA +AG G VG
Sbjct: 122 DHPDYAVGRRLGGALADA-GFAVITGGGPGAMEAVNRGAQEAG----GLSVG-------- 168
Query: 64 SNFHPYLPLETYL--------TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
LP E L + R+F RK + A V LPGG GTLDE
Sbjct: 169 --LGIELPFEQRLNDWVDLGVSFRYFFVRKTMFVKYG--------EAFVCLPGGFGTLDE 218
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L L+Q ++ + PV L +Y ++ LLD+L K+ L + D
Sbjct: 219 LFEALTLVQTGKV-TRFPVVLLGTDY---WRGLLDWLRSTVGATGRIKETDLDLVSLTDD 274
Query: 176 NSEALSYLAE 185
EA+ + E
Sbjct: 275 VDEAVRLVVE 284
>gi|408501236|ref|YP_006865155.1| putative methionyl-tRNA formyltransferase [Bifidobacterium
asteroides PRL2011]
gi|408466060|gb|AFU71589.1| putative methionyl-tRNA formyltransferase [Bifidobacterium
asteroides PRL2011]
Length = 255
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 23/156 (14%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQ-AGKPVG-GFKVGKEAG 59
G D P Y + ++GG++A+ +G GPG+M+A KGA + GK VG G ++ E G
Sbjct: 88 GKDDPTYAAARKMGGDLAKA-GMAVITGGGPGIMEAANKGAAEVGGKSVGLGIELPMEQG 146
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
N +T R+F RK + + + ++ PGG GTLDEMFE+
Sbjct: 147 LNRWVNLG--------ITFRYFFVRKMMFMKYS--------SGIIVCPGGFGTLDEMFEV 190
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
L L+Q + S +P+ V+ ++++ L D++ D
Sbjct: 191 LTLVQTHKAPS-MPI---VLFDRAYWQGLFDWISDT 222
>gi|117929049|ref|YP_873600.1| hypothetical protein Acel_1842 [Acidothermus cellulolyticus 11B]
gi|117649512|gb|ABK53614.1| conserved hypothetical protein 730 [Acidothermus cellulolyticus
11B]
Length = 289
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 35/157 (22%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHP Y + +LG +AR +G GPG+M+AV KG +AG G VG
Sbjct: 116 PDHPDYAAAEKLGAALARA-GYAVITGGGPGVMEAVNKGCSEAG----GVSVG------- 163
Query: 63 ASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L R+F ARK + A V PGG GTLD
Sbjct: 164 ---LGIELPFEQRLNDWVDIGIQFRYFFARKTMFVKYA--------QGFVVFPGGFGTLD 212
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 151
E+FE L L+Q ++ S PV V+ + ++ L+++
Sbjct: 213 ELFEALTLVQTRKVTS-FPV---VLYREEYWHDLIEW 245
>gi|345303991|ref|YP_004825893.1| hypothetical protein Rhom172_2155 [Rhodothermus marinus
SG0.5JP17-172]
gi|345113224|gb|AEN74056.1| Conserved hypothetical protein CHP00730 [Rhodothermus marinus
SG0.5JP17-172]
Length = 247
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA +AG G VG +PY+ + + FF RK
Sbjct: 95 TGGGPGIMEAANKGAKEAG----GVSVGLNIVIPHEQESNPYIDRDKLINFDFFFVRKVM 150
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A + LPGG GT+DE+FE L LIQ G P ++M D ++
Sbjct: 151 FVKYA--------QGFIVLPGGFGTMDELFEALTLIQ---TGKATRFPVILMGTD-YWSG 198
Query: 148 LLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
LLD+L + G ++ +++ L+ + D+ EA + FY
Sbjct: 199 LLDWLRNEMLAAGNISPEDL-ELFMLTDAPEEAAEIIETFY 238
>gi|167566521|ref|ZP_02359437.1| decarboxylase family protein [Burkholderia oklahomensis EO147]
gi|167573601|ref|ZP_02366475.1| decarboxylase family protein [Burkholderia oklahomensis C6786]
Length = 244
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD HY +L +IAR L SG GPG+M+A KGA P G + +
Sbjct: 54 LKPDSAHY----KLAVQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNI-EL 108
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E ++F + L R F RK + + AV+ +PGG GTLDE+
Sbjct: 109 PHEQAGNHFQ-----DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTLDELS 155
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ S L VP +++ + F+ LL + D G + D++ +L K+ D
Sbjct: 156 EVLTLIQTKK--SRL-VPIVLVGSE-FWTGLLQWFRDQMIPMGLINPDDM-NLMKVIDDP 210
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 211 DQVLEAVLAFYE 222
>gi|148240988|ref|YP_001220489.1| hypothetical protein BBta_p0149 [Bradyrhizobium sp. BTAi1]
gi|146411364|gb|ABQ39817.1| hypothetical protein BBta_p0149 [Bradyrhizobium sp. BTAi1]
Length = 296
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +AG P GF + + +PY E +F+
Sbjct: 110 DNVIATGGGPGIMEAANRGATEAGAPSIGFNITLPQEQQP----NPYSTPELTFQFHYFA 165
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK L A+R + A+VA PGG GT DE+FEIL L Q ++ P +V+ +
Sbjct: 166 MRKMHL---AMRAN-----ALVAFPGGFGTFDELFEILTLRQTKKS----PAIPIVLFDE 213
Query: 143 SFYKKLLDFLGDCEDWGTVAKDE 165
+++ ++F E GT+ + E
Sbjct: 214 QYWRSAVNFEALIES-GTIDRSE 235
>gi|298208571|ref|YP_003716750.1| hypothetical protein CA2559_10023 [Croceibacter atlanticus
HTCC2559]
gi|83848494|gb|EAP86363.1| hypothetical protein CA2559_10023 [Croceibacter atlanticus
HTCC2559]
Length = 229
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDH +Y + ++ +I + +G GPG+M+A KGA AG G VG
Sbjct: 52 PDHKYYKLAVDVAEKIVQH-GYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNIDLPF 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 107 EQHDNPYIDSDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITL 158
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +I P +++ D F+ L+D++ + + + ++ ++ L ++ D+ E L
Sbjct: 159 IQTTKIQK---FPIILVGTD-FWSGLVDWVRNTLLDSFQNISAHDM-DLVQVVDTADEVL 213
Query: 181 SYLAEFYD 188
L +FYD
Sbjct: 214 DILDKFYD 221
>gi|256374922|ref|YP_003098582.1| hypothetical protein Amir_0774 [Actinosynnema mirum DSM 43827]
gi|255919225|gb|ACU34736.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827]
Length = 255
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 29/194 (14%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
HP Y +LGG +A +G GPG M+AV +G +AG G+ VG
Sbjct: 85 HPEYEVGRQLGGALAEA-GFAVITGGGPGAMEAVNRGCSEAG----GYSVGLGIELPFEQ 139
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+P++ L + R+F RK I + A + LPGG GTLDE+FE L L+Q
Sbjct: 140 GLNPWVDLG--VNFRYFFVRKTMFIKYS--------QAFICLPGGFGTLDELFEALTLVQ 189
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184
+++ ++ PV V+ S+++ L D++ +D V KI D + L
Sbjct: 190 TKKV-TKFPV---VLFGRSYWQGLYDWV----------RDSVLGSGKIGDKDLALLHLTD 235
Query: 185 EFYDLSSIDKRVHE 198
+ D + + H+
Sbjct: 236 DVEDAVRVVREAHQ 249
>gi|34557071|ref|NP_906886.1| hypothetical protein WS0656 [Wolinella succinogenes DSM 1740]
gi|34482786|emb|CAE09786.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 206
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
G P+Y Q+ E+G A++ +G GPG+M+A +GA +AG G VG
Sbjct: 22 FGEGSPYYEQAREMGRRFAQM-GYGVITGGGPGIMEAANRGAKEAG----GVSVGLNIKL 76
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY+ + L +F RK + + A + PGG GTLDEMFE+L
Sbjct: 77 PHEQHPNPYI--DVSLEFNYFFVRKLMFVKYS--------HAFLIFPGGFGTLDEMFEVL 126
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
L+Q G P+P LV+ +++ L +L + G +A ++ W + DS E
Sbjct: 127 TLVQ---TGKSTPLP-LVLYGSDYWRGLESWLKETLLAQGAIAPND-CDFWAMVDSMEEV 181
Query: 180 LSYLAEF 186
F
Sbjct: 182 CEVFKRF 188
>gi|393773993|ref|ZP_10362375.1| hypothetical protein WSK_3372 [Novosphingobium sp. Rr 2-17]
gi|392720579|gb|EIZ78062.1| hypothetical protein WSK_3372 [Novosphingobium sp. Rr 2-17]
Length = 295
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ +F+ RK H
Sbjct: 149 SGGGPSIMEAANRGATDVGAESLGLNIVLPHEQ--APN--PYVTPRLSFQFHYFALRKMH 204
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ G P+P L+ + F++
Sbjct: 205 FLLRA---------RAVAVFPGGFGTFDEFFELLTLIQ---TGKMKPIPILLYGRE-FWE 251
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ G + + ++ L+ C++ + S++ +FYDL
Sbjct: 252 RIINFEALAEE-GVINRKDL-DLFHWCETAQDGWSHVRKFYDL 292
>gi|410694323|ref|YP_003624945.1| putative lysine decarboxylase [Thiomonas sp. 3As]
gi|294340748|emb|CAZ89140.1| putative lysine decarboxylase [Thiomonas sp. 3As]
Length = 314
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 20/167 (11%)
Query: 28 SGAGPGLMDAVTKGAMQA-GKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKH 86
+G GPG+M+A +GA +A GK +G V + +PY+ E +F+ RK
Sbjct: 151 TGGGPGIMEAGNRGAFEAQGKSIGLNIVLQHE-----QRPNPYITPELCFQFHYFALRKM 205
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
+ +V A+V PGG GTLDE+FE+L L Q ++ + P+ V+ +SF++
Sbjct: 206 HFLMRSV--------ALVCFPGGFGTLDELFEVLTLTQARKV-RQRPI---VLFGESFWR 253
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
KL++F E A+D L+ ++ +A LA ++L+ D
Sbjct: 254 KLINFDYLVETGMIAAED--LDLFHFVETAEQAWDVLARAFELNGAD 298
>gi|392399581|ref|YP_006436182.1| Rossmann fold nucleotide-binding protein [Flexibacter litoralis DSM
6794]
gi|390530659|gb|AFM06389.1| putative Rossmann fold nucleotide-binding protein [Flexibacter
litoralis DSM 6794]
Length = 286
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 24/189 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGE 60
PDH +Y + E+ ++ R +G GPG+M+A KGA + GK VG + E G
Sbjct: 109 PDHKYYKLTEEIAAKLVRH-GYGVITGGGPGIMEAGNKGARSEKGKSVGLNIVLPFEQGA 167
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY+ L+ + +F RK + + + +PGG+GTLDE+FE
Sbjct: 168 ------NPYIDLDKLINFDYFFVRKVMFVKYS--------QGFIVMPGGLGTLDELFEAY 213
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSE 178
LIQ ++I + P+ V+ F+ ++D++ E V+ +++ +L + D+ E
Sbjct: 214 TLIQTKKI-ARFPI---VLVGKEFWGGMMDWIKTTVLEKEQNVSAEDL-NLISLVDTADE 268
Query: 179 ALSYLAEFY 187
A+ + +FY
Sbjct: 269 AVKVIDDFY 277
>gi|126724397|ref|ZP_01740240.1| decarboxylase family protein [Rhodobacterales bacterium HTCC2150]
gi|126705561|gb|EBA04651.1| decarboxylase family protein [Rhodobacteraceae bacterium HTCC2150]
Length = 283
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G +G + Y+ E +F+ RK
Sbjct: 141 TGGGPGVMEAGNRGAIDAG----GASIGLNIVLPHEQAPNEYVTPELCFNFHYFAIRKMH 196
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ A PGG GTLDE+FE L LIQ R+ +PFL+ + F+ K
Sbjct: 197 FLMRA--------KALCAFPGGFGTLDELFEALTLIQTGRMNR---IPFLLFGKE-FWNK 244
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++ D++ L+K DS +EA+ +
Sbjct: 245 IINWEA-LADAGTISPDDL-DLFKFVDSAAEAVELI 278
>gi|403508562|ref|YP_006640200.1| putative lysine decarboxylase family protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402799078|gb|AFR06488.1| putative lysine decarboxylase family protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 252
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD +Y ++G +A T +G GPG+M+A KGA QAG G VG
Sbjct: 71 PDSEYYRLGEQVGARLAEA-GYATITGGGPGMMEAANKGAQQAG----GLSVGLGIELPF 125
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + +T R+F RK + + A V LPGG GTLDE+FE + L
Sbjct: 126 EQSLNPYVDMG--VTFRYFFVRKTMFVKYS--------QAFVVLPGGFGTLDELFEAITL 175
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW 158
+Q +++ + PV + +F G DW
Sbjct: 176 VQTKKV-TRFPVVLVGT----------EFWGGLRDW 200
>gi|212703406|ref|ZP_03311534.1| hypothetical protein DESPIG_01449 [Desulfovibrio piger ATCC 29098]
gi|212673151|gb|EEB33634.1| TIGR00730 family protein [Desulfovibrio piger ATCC 29098]
Length = 221
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 35/171 (20%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLP--------LETYLTCR 79
+G GPG+M+A KGA +AG G VG H LP ++T R
Sbjct: 77 TGGGPGVMEAANKGAAEAG----GVSVG----------LHIELPHEQGCNQYVKTRCNFR 122
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK + A+ A V +PGG+GT+DE+ E L Q RI P P ++
Sbjct: 123 YFFTRKFMFVKYAM--------AYVVMPGGMGTIDELSEAFVLAQTGRI---RPFPIILY 171
Query: 140 NYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
N S++ LL++L + G + ++E+ L +CD+ + + +L + L
Sbjct: 172 N-SSYWAGLLEWLRTSMANGGFINREEIDKLVTVCDTPEQVVEHLCKIVIL 221
>gi|410662822|ref|YP_006915193.1| hypothetical protein M5M_01160 [Simiduia agarivorans SA1 = DSM
21679]
gi|409025179|gb|AFU97463.1| hypothetical protein M5M_01160 [Simiduia agarivorans SA1 = DSM
21679]
Length = 216
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 19/151 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP+Y + LG +A +G GPG+M+A KGA K GG +G
Sbjct: 44 EHPYYAAAETLGRLMAEA-GVPVITGGGPGIMEAANKGA----KDAGGVSIGLNITLPME 98
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY + LT R+F RK + AV V +PGG GTLDE+FE L L+
Sbjct: 99 QAPNPYQTIS--LTFRYFFVRKLMFVKHAV--------GFVIMPGGFGTLDELFEALTLV 148
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
Q ++ S P +++N + ++ L+D+L +
Sbjct: 149 QTGKVAS---FPIVLVNRE-YWAGLVDWLKN 175
>gi|322437142|ref|YP_004219354.1| hypothetical protein AciX9_3570 [Granulicella tundricola MP5ACTX9]
gi|321164869|gb|ADW70574.1| Conserved hypothetical protein CHP00730 [Granulicella tundricola
MP5ACTX9]
Length = 325
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 17 EIARLLDC--TTW--------------SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
E AR L C TW SG GPG+M+A +GA AG G + +
Sbjct: 123 EDARTLACKIATWAKTLPGPRHRFVITSGGGPGIMEAANRGAWDAGAKTIGLNIKLPFEQ 182
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ + P L E +F RK A A+V PGG GT+DEMFE+L
Sbjct: 183 YPNAYISPELNFE----FSYFFMRKFWFAYLA--------KALVVFPGGFGTIDEMFELL 230
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ +LPV V+ ++K +L+ L G +A+ ++ L++ D+ EA
Sbjct: 231 TLVQTHKLAKDLPV---VIYGSEYWKSVLN-LELLAAKGAIAQKDL-DLFQFADTPDEAF 285
Query: 181 SYL 183
+ L
Sbjct: 286 AIL 288
>gi|424879782|ref|ZP_18303414.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WU95]
gi|392516145|gb|EIW40877.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WU95]
Length = 288
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGETFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IINFEALAE-FGTIAPDDV-KLISFVDTAEAAWKIVQDFYE 285
>gi|303328438|ref|ZP_07358875.1| methionyl-tRNA formyltransferase [Desulfovibrio sp. 3_1_syn3]
gi|345893170|ref|ZP_08843973.1| hypothetical protein HMPREF1022_02633 [Desulfovibrio sp.
6_1_46AFAA]
gi|302861432|gb|EFL84369.1| methionyl-tRNA formyltransferase [Desulfovibrio sp. 3_1_syn3]
gi|345046373|gb|EGW50260.1| hypothetical protein HMPREF1022_02633 [Desulfovibrio sp.
6_1_46AFAA]
Length = 222
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 9 LQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
+Q ++ +IAR+L + +G GPG+M+A KGA +AG G + E N
Sbjct: 56 MQEYQDAEKIARMLVDAGFGVITGGGPGIMEAANKGAFEAGGESVGLHI--ELPHEQGCN 113
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
+ ++T R+F RK + A+ A V +PGG+GT+DE+ E L Q
Sbjct: 114 KY----VKTRCNFRYFFIRKFMFVKYAM--------AYVVMPGGMGTIDELSEAFVLAQT 161
Query: 126 ERIGSELPVPFLVMNYDS-FYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
R PF ++ YDS F+ LL++L G + + E+ L +CD+ E +++L
Sbjct: 162 GRTR-----PFPIILYDSRFWSGLLEWLRKSMAAGGFIHETEIDKLVTVCDTPEEVVNHL 216
Query: 184 AEFYDL 189
+ L
Sbjct: 217 CKIIIL 222
>gi|152990674|ref|YP_001356396.1| decarboxylase family protein [Nitratiruptor sp. SB155-2]
gi|151422535|dbj|BAF70039.1| decarboxylase family protein [Nitratiruptor sp. SB155-2]
Length = 306
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSA 83
T +G GPG+M+A +GA G G + ++ +PY+ E +F+
Sbjct: 146 LTLMTGGGPGIMEAANRGAYNVGAKSIGLNIQLPHEQFP----NPYVSPELCFQFHYFAI 201
Query: 84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
RK + A C A+V PGG GTLDE+FE L LIQ + P+P +++ +
Sbjct: 202 RKLHFLHRA-----C---ALVVFPGGFGTLDELFETLTLIQTHK---NRPIPVVLVGKE- 249
Query: 144 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
++ KL++F D GT+ +++ ++ ++ EA Y+ +Y+ +D
Sbjct: 250 YWHKLINF-KFLVDEGTIEPEDL-HIFTFKENAQEAWEYILGWYEKRGLD 297
>gi|300782970|ref|YP_003763261.1| lysine decarboxylase [Amycolatopsis mediterranei U32]
gi|384146192|ref|YP_005529008.1| lysine decarboxylase [Amycolatopsis mediterranei S699]
gi|399534856|ref|YP_006547518.1| lysine decarboxylase [Amycolatopsis mediterranei S699]
gi|299792484|gb|ADJ42859.1| putative lysine decarboxylase [Amycolatopsis mediterranei U32]
gi|340524346|gb|AEK39551.1| lysine decarboxylase [Amycolatopsis mediterranei S699]
gi|398315626|gb|AFO74573.1| lysine decarboxylase [Amycolatopsis mediterranei S699]
Length = 261
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D+P Y ++GG +A +G GPG M+AV +GA +AG GF VG
Sbjct: 90 DNPEYELGRKIGGALANA-GFAVMTGGGPGAMEAVNRGAAEAG----GFSVGLGIELPFE 144
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F ARK I + A + LPGG GTLDE+FE L L+
Sbjct: 145 QGLNPWVDLG--VNFRYFFARKTMFIKYS--------QAFICLPGGFGTLDELFEALTLV 194
Query: 124 QLERIGSELPVPFLVMNY 141
Q +++ ++ PV +Y
Sbjct: 195 QTKKV-TKFPVVLFGSDY 211
>gi|226365434|ref|YP_002783217.1| hypothetical protein ROP_60250 [Rhodococcus opacus B4]
gi|226243924|dbj|BAH54272.1| hypothetical protein [Rhodococcus opacus B4]
Length = 265
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 37/192 (19%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HP Y LG +A +G GPG+M+A +GA ++G G+ +G
Sbjct: 85 PGHPEYEAGRALGARLAEA-GYAVITGGGPGVMEAANRGASESG----GYSIG------- 132
Query: 63 ASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L R+F ARK + + A + LPGG GTLD
Sbjct: 133 ---LGIELPFEQGLNEWVDLGINFRYFFARKTMFVKYS--------QAFICLPGGFGTLD 181
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKIC 173
E+FE L L+Q ++ + P+ Y + L+D++ G E G +++ +V +L +
Sbjct: 182 ELFEALTLVQTRKV-TRFPIILFGTEY---WSGLVDWIRGTLERSGKISEGDV-NLLHVT 236
Query: 174 DSNSEALSYLAE 185
DS EA+ + +
Sbjct: 237 DSVEEAVQIVVK 248
>gi|121604530|ref|YP_981859.1| hypothetical protein Pnap_1624 [Polaromonas naphthalenivorans CJ2]
gi|120593499|gb|ABM36938.1| conserved hypothetical protein 730 [Polaromonas naphthalenivorans
CJ2]
Length = 287
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 25/172 (14%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV--GKEAGEWTASNFHPYLPLETYLT 77
+L CT G GPG+M+A +GA + G G + E G +PY+
Sbjct: 139 QLFICT---GGGPGIMEAANRGAQEMGALTVGLNIVLPHEQGS------NPYISPSLNFK 189
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F+ RK + A A+VA PGG GTLDE+FE++ L+Q ++ PVP +
Sbjct: 190 FHYFALRKMHFMMRA--------KALVAFPGGFGTLDELFEVITLVQTKKAK---PVPII 238
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ + ++K+L +F E+ +D L + D A + FY+L
Sbjct: 239 LFGTE-YWKRLFNFDIMIEEGAISPQD--LDLIQYVDEPQAAWDAIKNFYEL 287
>gi|441520849|ref|ZP_21002513.1| hypothetical protein GSI01S_10_00660 [Gordonia sihwensis NBRC
108236]
gi|441459421|dbj|GAC60474.1| hypothetical protein GSI01S_10_00660 [Gordonia sihwensis NBRC
108236]
Length = 275
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 12 FELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+EL E+ R L +G GPG M+A +GA +AG G + + T +P
Sbjct: 113 YELARELGRRLGHEGFAVITGGGPGAMEATNRGAYEAGAQSIGLNIELPFEQHT----NP 168
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
+L L + R+F RK + A A V LPGG GTLDE+FE L L+Q +++
Sbjct: 169 WLTL--TMNFRYFFVRKTMFVKYA--------QAFVCLPGGFGTLDELFEALTLVQTKKV 218
Query: 129 GSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
L P +++ + F+ L+D+L G E G ++ +V L + D+ +EA+ +
Sbjct: 219 ---LRFPIVLIGRE-FWGPLVDWLRGTLEAGGKISPGDV-DLLHVVDTAAEAVEIV 269
>gi|241202834|ref|YP_002973930.1| hypothetical protein Rleg_0080 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240856724|gb|ACS54391.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 288
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGETFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IINFEALAE-FGTIAPDDV-KLISFVDTAEAAWKIVQDFYE 285
>gi|381189386|ref|ZP_09896934.1| hypothetical protein HJ01_03454 [Flavobacterium frigoris PS1]
gi|379648595|gb|EIA07182.1| hypothetical protein HJ01_03454 [Flavobacterium frigoris PS1]
Length = 242
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 19/162 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA G G VG +F+PY+ + L +F RK
Sbjct: 89 TGGGPGIMEAGNKGAHLGG----GTSVGLNIVLPFEQHFNPYIDGDKNLNFDYFFVRKVM 144
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + V +PGG GT+DE+FE + LIQ ++I + P+ ++ SF+
Sbjct: 145 FVKYS--------QGFVVMPGGFGTMDELFEAMTLIQTKKI-ARFPI---ILVGTSFWSG 192
Query: 148 LLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
L++++ E TV D++ L KI D+ E + L FY
Sbjct: 193 LIEWIKTVLIEKEHTVGPDDL-KLIKIVDTEDEVVDVLDNFY 233
>gi|256832044|ref|YP_003160771.1| hypothetical protein Jden_0806 [Jonesia denitrificans DSM 20603]
gi|256685575|gb|ACV08468.1| conserved hypothetical protein [Jonesia denitrificans DSM 20603]
Length = 267
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 35/206 (16%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKE 57
PDHP Y EL ARL+ +G GPG+M+A +GA +A G VG G ++ E
Sbjct: 81 PDHPDY----ELAHTCARLVVERGYAVITGGGPGVMEAGNRGAYEADGVSVGLGIELPFE 136
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
G + Y+ L + R+F ARK + A + + LPGG GT DE+F
Sbjct: 137 QG------MNEYVNLG--VNFRYFFARKTMFVKYA--------SGFIVLPGGFGTFDELF 180
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
E L L+Q +I +E P+ + +Y + L+ +L D + L+ + D+
Sbjct: 181 EALTLVQTHKI-TEFPIVLVGKDY---WAGLIAWLKDSVAKRGMINPADVDLFHVVDTAE 236
Query: 178 EALSYLAEFYDLSSIDKRVHEVNLKS 203
EA+ +A+ D VH L+S
Sbjct: 237 EAVQIVADHAD------SVHAAALES 256
>gi|16125063|ref|NP_419627.1| hypothetical protein CC_0810 [Caulobacter crescentus CB15]
gi|221233790|ref|YP_002516226.1| 3-isopropylmalate dehydrogenase [Caulobacter crescentus NA1000]
gi|13422057|gb|AAK22795.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962962|gb|ACL94318.1| 3-isopropylmalate dehydrogenase [Caulobacter crescentus NA1000]
Length = 260
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
++ D +G GPGLM+A +GA + G P GF + + +PY E
Sbjct: 104 KVRDNVIATGGGPGLMEAANRGAFEVGAPSIGFNITLPHEQVP----NPYCTPELTFRFH 159
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK L A+R + A+V PGG GT DE+FEIL L Q ++ P+P ++
Sbjct: 160 YFAMRKMHL---AMRAN-----ALVVFPGGFGTFDELFEILTLRQTDKAP---PIPIVLF 208
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKD 164
+ +++++ +++F E A D
Sbjct: 209 D-EAYWRSIINFEALVEHGMIAASD 232
>gi|424915768|ref|ZP_18339132.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|392851944|gb|EJB04465.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WSM597]
Length = 288
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGATDEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IINFDALAE-FGTIAPDDV-KLISFVDTAEAAWKIIQDFYE 285
>gi|68536475|ref|YP_251180.1| hypothetical protein jk1389 [Corynebacterium jeikeium K411]
gi|68264074|emb|CAI37562.1| hypothetical protein jk1389 [Corynebacterium jeikeium K411]
Length = 285
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 29/207 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P H +Y E G E+ RL+ T +G GPGLM+A +GA ++G G +G
Sbjct: 83 PGHEYY----EKGRELGRLIHEAGYATITGGGPGLMEAPNRGAQESG----GMSIGLGIE 134
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ ++ L L R+F RK + + A + LPGG GTLDE+FE
Sbjct: 135 LPMEQGMNQWVDLG--LNFRYFFVRKTMFLKYS--------QAFICLPGGYGTLDELFEA 184
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSE 178
L ++Q E+I + P+ ++ F+ L+D++ D + G ++ ++V L+ + D +E
Sbjct: 185 LVMVQTEKI-RKFPI---ILIGKEFWGGLVDWIRDRLVEEGMISPEDV-DLFHVTDDPAE 239
Query: 179 ALSYLAEFYD--LSSIDKRVHEVNLKS 203
A+ + +D + + R E+ L+
Sbjct: 240 AVRICVDAHDNHVRKLQIRQEELALEQ 266
>gi|452912141|ref|ZP_21960794.1| hypothetical protein C884_01686 [Kocuria palustris PEL]
gi|452832723|gb|EME35551.1| hypothetical protein C884_01686 [Kocuria palustris PEL]
Length = 311
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P ++L E+ R L T +G GPG+M+A +GA P G +
Sbjct: 112 PEGAADYDLAREVGRALGRAGYTVITGGGPGIMEAANRGAHDVEAPSVGLGIELP----H 167
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ L + R+F RK + +ALPGG GTLDE+FE L L
Sbjct: 168 EQSLNPYIDLG--INFRYFFVRKTMFAKYS--------HGFIALPGGFGTLDELFECLTL 217
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
+Q G P ++M +F+ LL+++ G + G V+ D+ L ++ DS EA+
Sbjct: 218 VQ---TGKMTRFPVVLMGV-AFWTPLLEWIRGSLVEQGMVSPDD-PDLVRLTDSAEEAVR 272
Query: 182 YLAEFYD 188
+ E +D
Sbjct: 273 IMREAHD 279
>gi|334139809|ref|YP_004533007.1| hypothetical protein [Novosphingobium sp. PP1Y]
gi|333937831|emb|CCA91189.1| conserved hypothetical protein [Novosphingobium sp. PP1Y]
Length = 290
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ +F+ RK H
Sbjct: 144 SGGGPSIMEAANRGAADVGAESLGLNIVLPHEQ--APN--PYVTPRLSFQFHYFALRKMH 199
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GTLDE E+L L+Q G P+P L+ + F++
Sbjct: 200 FLLRA---------RAVAVFPGGFGTLDEFLELLTLVQ---TGKMKPIPILLYGRE-FWE 246
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ GT+ ++ L+ C++ E + + EFYDL
Sbjct: 247 RIINFEALAEE-GTINASDL-DLFHWCETGEEGWTRIREFYDL 287
>gi|238060938|ref|ZP_04605647.1| hypothetical protein MCAG_01904 [Micromonospora sp. ATCC 39149]
gi|237882749|gb|EEP71577.1| hypothetical protein MCAG_01904 [Micromonospora sp. ATCC 39149]
Length = 283
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 73/161 (45%), Gaps = 35/161 (21%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P + ELG +AR +G GPG+M+A +GA +AG G VG
Sbjct: 86 PDSPECRLAEELGAALARA-GYAVITGGGPGVMEAANRGASEAG----GLSVG------- 133
Query: 63 ASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L R+F ARK + A A V LPGG GT+D
Sbjct: 134 ---LGIELPFEQGLNDWVDLAIDFRYFFARKTMFVKYA--------QAFVVLPGGFGTMD 182
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E+FE L L+Q ++ + PV + Y ++ LLD+L D
Sbjct: 183 ELFEALTLVQTGKV-TRFPVVLMGTEY---WRGLLDWLRDT 219
>gi|390955654|ref|YP_006419412.1| hypothetical protein Aeqsu_2956 [Aequorivita sublithincola DSM
14238]
gi|390421640|gb|AFL82397.1| TIGR00730 family protein [Aequorivita sublithincola DSM 14238]
Length = 229
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 26/191 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y +L IA+ + + +G GPG+M+A KGA AG G VG
Sbjct: 52 PDHKYY----KLAENIAKKITENGYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNIT 103
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ + L +F RK + + V +PGG GTLDE FE
Sbjct: 104 LPFEQHDNPYIDSDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDEFFEA 155
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNS 177
L LIQ ++ + P+ ++ F+ L D++ E V +++ L+ + D+
Sbjct: 156 LTLIQTHKV-DKFPI---ILVGTEFWGGLYDWIKTTLLEANNNVCAEDL-DLFHLVDTED 210
Query: 178 EALSYLAEFYD 188
E L L EFYD
Sbjct: 211 EVLKILNEFYD 221
>gi|292493376|ref|YP_003528815.1| hypothetical protein Nhal_3396 [Nitrosococcus halophilus Nc4]
gi|291581971|gb|ADE16428.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
Length = 241
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P P+Y +L EIA L + SG GPGLM+A KGA P G +
Sbjct: 58 PGDPYY----QLTEEIAWALSDAGFSVISGGGPGLMEAANKGAFMGASPSVGLNISL-PH 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E A+ + + + R F +RK + A +A V LPGG GTLDE+ EI
Sbjct: 113 EQVANEYQ-----DIAVNFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELAEI 159
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q G +P L+++ SF+ L+D F + G + ++ L+K+ D E
Sbjct: 160 LTLVQ---TGKSRRIPILLVS-SSFWAGLIDWFKKHLVEEGMIDSHDL-DLFKVLDEPQE 214
Query: 179 ALSYLAEFYDLSSIDKRVHE 198
+ + +Y+ + E
Sbjct: 215 VVDAIFSYYESRGFEPSAEE 234
>gi|389796380|ref|ZP_10199435.1| hypothetical protein UUC_01682 [Rhodanobacter sp. 116-2]
gi|388448599|gb|EIM04580.1| hypothetical protein UUC_01682 [Rhodanobacter sp. 116-2]
Length = 284
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +AG G + + S P L + +F+
Sbjct: 132 DFVVVTGGGPGIMEAANRGAYEAGARSIGLNITLPHEQQPNSWITPELAFRFH----YFA 187
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+VA PGG GTLDE+FE+L L+Q ++ LP+ V+
Sbjct: 188 VRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTGKM-PRLPI---VLVGS 235
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+F+++ D E +D A L + ++ +A++ + FYD
Sbjct: 236 TFWRRACDLAFLIEQGMLDPRD--AELLSVVENAEQAVAAMHAFYD 279
>gi|113868700|ref|YP_727189.1| Rossmann fold nucleotide-binding protein [Ralstonia eutropha H16]
gi|113527476|emb|CAJ93821.1| Predicted Rossmann fold nucleotide-binding protein [Ralstonia
eutropha H16]
Length = 315
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 91/197 (46%), Gaps = 27/197 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL + SG GPG+M+A KGA AGK VG
Sbjct: 133 DSPYYQRTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 184
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 185 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 234
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP ++M F+K LLD F G +A+ ++ L KI D E
Sbjct: 235 TLVQ---TGKSRSVP-VIMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMKIVDEPHEV 289
Query: 180 LSYLAEFYDLSSIDKRV 196
L + ++Y+ DK +
Sbjct: 290 LEAVYDYYEQRGGDKPI 306
>gi|194290335|ref|YP_002006242.1| hypothetical protein RALTA_A2245 [Cupriavidus taiwanensis LMG
19424]
gi|193224170|emb|CAQ70179.1| conserved hypothetical protein; putative exported protein
[Cupriavidus taiwanensis LMG 19424]
Length = 315
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 91/197 (46%), Gaps = 27/197 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL + SG GPG+M+A KGA AGK VG
Sbjct: 133 DSPYYQRTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 184
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 185 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 234
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP ++M F+K LLD F G +A+ ++ L KI D E
Sbjct: 235 TLVQ---TGKSRSVP-VIMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMKIVDEPHEV 289
Query: 180 LSYLAEFYDLSSIDKRV 196
L + ++Y+ DK +
Sbjct: 290 LEAVYDYYEQRGGDKPI 306
>gi|159039661|ref|YP_001538914.1| hypothetical protein Sare_4133 [Salinispora arenicola CNS-205]
gi|157918496|gb|ABV99923.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length = 283
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 27/196 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P + LGG +AR +G GPG+M A +G +AG G VG
Sbjct: 86 PDSPECRMAEALGGALARA-GYAVITGGGPGVMAAANRGTREAG----GLSVGLGIELPF 140
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ ++ L + R+F ARK + A A V LPGG GT+DE+FE L L
Sbjct: 141 EQGINDWVDLA--IEFRYFFARKTMFVKYA--------QAFVVLPGGFGTMDELFEALTL 190
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS--LWKIC--DSNSE 178
+Q ++ + PV + ++Y ++ LLD+L D VA ++ + L IC D +
Sbjct: 191 VQTGKV-TRFPVVLMGVDY---WRGLLDWLRDT----MVADGKIGAIDLDLICLTDDVNT 242
Query: 179 ALSYLAEFYDLSSIDK 194
A+ ++ E L S D+
Sbjct: 243 AVRHIVEAEALLSADQ 258
>gi|453383104|dbj|GAC82391.1| hypothetical protein GP2_002_00610 [Gordonia paraffinivorans NBRC
108238]
Length = 274
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
M PD P Y LG E+ R L + +G GPG M A +GA QAG G +
Sbjct: 90 MKPDSPEY----ALGVEVGRALGEAGYAVITGGGPGAMQAANQGAHQAGAQSIGLNIELP 145
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +P++ L + R+F RK + AV V LPGG+GTLDE+F
Sbjct: 146 FEQ----TLNPWVDLG--MNFRYFFVRKTMFVKYAV--------GFVCLPGGLGTLDELF 191
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E L L+Q +++ P+ V+ F+ LLD++ D
Sbjct: 192 EALTLVQTKKV-VRFPI---VLVGTEFWAGLLDWMRDV 225
>gi|344338651|ref|ZP_08769582.1| Conserved hypothetical protein CHP00730 [Thiocapsa marina 5811]
gi|343801233|gb|EGV19176.1| Conserved hypothetical protein CHP00730 [Thiocapsa marina 5811]
Length = 301
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA V +G +PY+ E +F+ RK H
Sbjct: 153 TGGGPGIMEAANRGAAD----VDAVSIGLSITLPHEQAPNPYITPELSFQFHYFALRKMH 208
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+V PGG GT DE+FE L LIQ ++I P+P ++ +F++
Sbjct: 209 FLLRA---------KALVVFPGGFGTFDELFETLCLIQTKKIR---PMPVMLFGR-AFWE 255
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++DF D G + +D++A L+ ++ +A S + YD
Sbjct: 256 RVIDFEA-LVDEGVIGRDDLA-LFSFVETAEDAWSRICAHYD 295
>gi|260577605|ref|ZP_05845543.1| lysine decarboxylase [Corynebacterium jeikeium ATCC 43734]
gi|258604258|gb|EEW17497.1| lysine decarboxylase [Corynebacterium jeikeium ATCC 43734]
Length = 270
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 29/207 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P H +Y E G E+ RL+ T +G GPGLM+A +GA ++G G +G
Sbjct: 68 PGHEYY----EKGRELGRLIHEAGYATITGGGPGLMEAPNRGAQESG----GMSIGLGIE 119
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ ++ L L R+F RK + + A + LPGG GTLDE+FE
Sbjct: 120 LPMEQGMNQWVDLG--LNFRYFFVRKTMFLKYS--------QAFICLPGGYGTLDELFEA 169
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSE 178
L ++Q E+I + P+ ++ F+ L+D++ D + G ++ ++V L+ + D +E
Sbjct: 170 LVMVQTEKI-RKFPI---ILIGKEFWGGLVDWIRDRLVEEGMISPEDV-DLFHVTDDPAE 224
Query: 179 ALSYLAEFYD--LSSIDKRVHEVNLKS 203
A+ + +D + + R E+ L+
Sbjct: 225 AVRICVDAHDNHVRKLQIRQEELALEQ 251
>gi|255038618|ref|YP_003089239.1| hypothetical protein Dfer_4873 [Dyadobacter fermentans DSM 18053]
gi|254951374|gb|ACT96074.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
Length = 244
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGE 60
PD+P+Y + ++ ++ R +G GPG+M+A KGA Q GK VG K+ E
Sbjct: 68 PDNPYYKTAEDIAAKLVRH-GYGVITGGGPGIMEAGNKGAFEQGGKSVGLNIKLPFEQ-- 124
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
SN Y+ + + FF RK + + + +PGG GTLDE+FE +
Sbjct: 125 --HSNL--YIDHDKSINFDFFFVRKVMFVKYS--------QGFIVMPGGFGTLDELFEAM 172
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ ++IG P+ V+ +++ LLD++ E L I D+ EA+
Sbjct: 173 TLIQTKKIG-RFPI---VLVGSTYWSGLLDWIKGTMLTEHNINPEDLKLISIVDTPDEAV 228
Query: 181 SYLAEFY 187
+ FY
Sbjct: 229 KVIDTFY 235
>gi|56477691|ref|YP_159280.1| hypothetical protein ebA3981 [Aromatoleum aromaticum EbN1]
gi|56313734|emb|CAI08379.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 261
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y+ L I+RLL SG GPG+M+A KGA P G +
Sbjct: 78 PDHMYYM----LTERISRLLSDAGFAVISGGGPGIMEAANKGAYFGKSPSIGLNIQLPLE 133
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ A+N PY + T + F ARK + A +A V LPGG GTLDE+ E
Sbjct: 134 Q--AAN--PYQDISQ--TFQHFFARKFMFVKFA--------SAYVVLPGGFGTLDELMEA 179
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
+ LIQ G +P +++ ++ F++ LLD+ D
Sbjct: 180 MTLIQ---TGKSRNIP-IILVHEPFWRGLLDWFRD 210
>gi|375013997|ref|YP_004990985.1| hypothetical protein [Owenweeksia hongkongensis DSM 17368]
gi|359349921|gb|AEV34340.1| TIGR00730 family protein [Owenweeksia hongkongensis DSM 17368]
Length = 241
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP Y +L EIA L + +G GPG+M+A KGA + G G VG
Sbjct: 65 DHPKY----KLAQEIAFNLTQKGYGVITGGGPGMMEAGNKGAQRGG----GTSVGLNIEL 116
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY+ + L +F RK + + + +PGG GTLDE+FE +
Sbjct: 117 PMEQEPNPYIDQDKNLNFDYFFVRKVMFVKYS--------QGFIVMPGGFGTLDELFEAI 168
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC---EDWGTVAKDEVASLWKICDSNS 177
LIQ +I S P+ V+ SF+ L+ ++ + + A D L+ I D+
Sbjct: 169 TLIQTFKI-SRFPI---VLVDSSFWSGLIGWVKEVLLTRENNISASD--LDLFTIVDTAD 222
Query: 178 EALSYLAEFY 187
EA+ + +FY
Sbjct: 223 EAVQVIEDFY 232
>gi|377813368|ref|YP_005042617.1| hypothetical protein BYI23_B011230 [Burkholderia sp. YI23]
gi|357938172|gb|AET91730.1| hypothetical protein BYI23_B011230 [Burkholderia sp. YI23]
Length = 249
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG----K 56
+ P+ P+Y ++ E+ + + SG GPG+M+A KGA P G + +
Sbjct: 59 LKPESPYYQRTIEIAQKFSDA-GFAVISGGGPGIMEAANKGAHAGKSPSVGLNIELPHEQ 117
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
+W + L R F RK + + AVV +PGG GTLDE+
Sbjct: 118 SGNQWQ----------DISLRFRHFFTRKVTFVKNS--------DAVVVMPGGFGTLDEL 159
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ VP +++ D F+ LLD+ + V + L ++ D
Sbjct: 160 AEVLTLIQTKK---SRHVPIVLVGAD-FWAGLLDWFKNTLLTNGVISPKDLDLMQVIDDP 215
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 216 DQVLDAVLRFYE 227
>gi|424909306|ref|ZP_18332683.1| TIGR00730 family protein [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|392845337|gb|EJA97859.1| TIGR00730 family protein [Rhizobium leguminosarum bv. viciae USDA
2370]
Length = 286
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GAM AG P G + + A N PY+ E +F+ RK + A
Sbjct: 150 MEAGNRGAMDAGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 203
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ + F++ +++F
Sbjct: 204 ------KAVVVFPGGFGTLDELFEALTLIQTKRMA---PIP-LILFGEKFWRSVVNF-EF 252
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
D+GT+A +++ +L ++ +A ++++Y+
Sbjct: 253 LADFGTIAPEDM-NLLHFAETADDAWKIISDYYE 285
>gi|377574190|ref|ZP_09803221.1| hypothetical protein MOPEL_073_00260 [Mobilicoccus pelagius NBRC
104925]
gi|377536993|dbj|GAB48386.1| hypothetical protein MOPEL_073_00260 [Mobilicoccus pelagius NBRC
104925]
Length = 247
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 29/188 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGK 56
+ P HP Y E+G RL++ +G GPG M+AV KGA + G +G G ++
Sbjct: 71 LAPRHPMYALGEEVG---ERLVEAGYAVITGGGPGTMEAVNKGADRKGGTSIGLGIELPF 127
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
E G +PY+ + + R+F RK + A + LPGG GT DE+
Sbjct: 128 EQG------LNPYVHIG--VNFRYFFIRKTMFVKHA--------EGFIVLPGGFGTFDEL 171
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDS 175
FE L L+Q +++ S PV V+ +++ LLD+L D GT+ +V L + D
Sbjct: 172 FEALTLVQTKKVTS-FPV---VLIGTEYWQGLLDWLRDVAVPAGTIGAADV-DLIHVTDD 226
Query: 176 NSEALSYL 183
+EA+ +
Sbjct: 227 PAEAVRII 234
>gi|116622689|ref|YP_824845.1| hypothetical protein Acid_3588 [Candidatus Solibacter usitatus
Ellin6076]
gi|116225851|gb|ABJ84560.1| conserved hypothetical protein 730 [Candidatus Solibacter usitatus
Ellin6076]
Length = 267
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R + C SG GPG+M+A +GA +AG G +G ++ +PY+ +
Sbjct: 94 RFVVC---SGGGPGIMEAANRGASEAGGKTVGLNIGLPFEQFP----NPYITPDLSFEFH 146
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK A A+V PGG GTLDE+ EIL L+Q +++ ++ V V+
Sbjct: 147 YFFMRKFWFAYLA--------KALVVFPGGFGTLDELMEILTLVQTQKLAKKMTV---VL 195
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+++K++++F + + +A +++ L++ D A L E
Sbjct: 196 YGSAYWKEIINFDALVK-YEMIAPEDL-ELFRFADDPESAFEILKE 239
>gi|218674139|ref|ZP_03523808.1| hypothetical protein RetlG_22712 [Rhizobium etli GR56]
Length = 286
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IINFEALAE-FGTIAPDDV-KLISFVDTADAAWKIVQDFYE 285
>gi|443293948|ref|ZP_21033042.1| Conserved hypothetical protein [Micromonospora lupini str. Lupac
08]
gi|385882733|emb|CCH21193.1| Conserved hypothetical protein [Micromonospora lupini str. Lupac
08]
Length = 287
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
GPD + E+GG +AR +G GPG+M+A +GA +AG G VG
Sbjct: 85 GPDSAECRLAEEMGGALARA-GYAVITGGGPGVMEAANRGATEAG----GLSVGLGIELP 139
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ L + R+F ARK + A A V LPGG GT+DE+FE L
Sbjct: 140 FEQGINDWVDLA--IDFRYFFARKTMFVKYA--------QAFVVLPGGFGTMDELFEALT 189
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
L+Q ++ + PV + + Y ++ LLD+L D
Sbjct: 190 LVQTGKV-TRFPVVLMGVAY---WQGLLDWLRDT 219
>gi|385810867|ref|YP_005847263.1| Rossmann fold nucleotide-binding protein [Ignavibacterium album JCM
16511]
gi|383802915|gb|AFH49995.1| Putative Rossmann fold nucleotide-binding protein [Ignavibacterium
album JCM 16511]
Length = 285
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYL 70
S L R + CT G GPG+M+A KGA +AG G+ +G + Y+
Sbjct: 109 SMNLETSANRFIICT---GGGPGIMEAANKGAKKAG----GYSIGLNISIPFEQFVNNYV 161
Query: 71 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGS 130
E +F RK + A+V PGG GT+DE FEIL LIQ E+I
Sbjct: 162 TKELSFEFHYFFMRKFWFAYLS--------KALVVFPGGFGTMDEFFEILTLIQTEKIRK 213
Query: 131 ELPVPFLVMNYDSFYKKLLDF 151
+L LV+ + ++K +++F
Sbjct: 214 KLA---LVVYDEKYWKSVINF 231
>gi|209547675|ref|YP_002279592.1| hypothetical protein Rleg2_0063 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533431|gb|ACI53366.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 288
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGATDEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRN 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + FY+
Sbjct: 247 IINFDALAE-FGTIAPDDV-KLISFVDTAEAAWKIIQNFYE 285
>gi|72389050|ref|XP_844820.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176331|gb|AAX70443.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70801354|gb|AAZ11261.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 326
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG M+A KGA G +G + + Y+ T +F
Sbjct: 173 DLVVTTGGGPGFMEAANKGASSVP---GALTMGMGISLPFEAGLNRYVTAGLAFTFHYFF 229
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK ++ SC A+V PGG GT+DE+FE+L L Q +I E P+ V+
Sbjct: 230 TRKFWMMY------SCR--AIVIAPGGFGTMDEVFELLTLRQTRKI-PEFPI---VLFCT 277
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F+K ++++ E +GT++K+EV SL DS EA++++ F+
Sbjct: 278 KFWKTVVNWEALAE-FGTISKEEVDSLC-FTDSVDEAVAFIRNFF 320
>gi|402490557|ref|ZP_10837346.1| hypothetical protein RCCGE510_22529 [Rhizobium sp. CCGE 510]
gi|401810583|gb|EJT02956.1| hypothetical protein RCCGE510_22529 [Rhizobium sp. CCGE 510]
Length = 288
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGETFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IINFDALAE-FGTIAPDDV-KLISFVDTAEAAWKIVQDFYE 285
>gi|270283867|ref|ZP_05965119.2| methionyl-tRNA formyltransferase [Bifidobacterium gallicum DSM
20093]
gi|270277590|gb|EFA23444.1| methionyl-tRNA formyltransferase [Bifidobacterium gallicum DSM
20093]
Length = 226
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 29/184 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVG-GFKVGKEAG- 59
PD P Y + +G IA+ + +G GPG M+A +GA +AG VG G ++ E G
Sbjct: 59 PDDPVYKSARTMGTMIAQR-NIAVITGGGPGTMEAANRGASEAGGVSVGLGIELPHEQGI 117
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + L R+F RK + + + + PGG GTLDEMFE
Sbjct: 118 NQW----------VNLGLNFRYFFVRKTMFVKYS--------SGFIICPGGFGTLDEMFE 159
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNS 177
+L L+Q ++ +PV Y ++ L+++L G +D G +++ + SL+ + D
Sbjct: 160 LLTLVQTHKV-RYMPVALFGSQY---WEGLIEWLRGPVQDHGMISQID-PSLFIVTDDPE 214
Query: 178 EALS 181
EA+S
Sbjct: 215 EAVS 218
>gi|56552575|ref|YP_163414.1| hypothetical protein ZMO1679 [Zymomonas mobilis subsp. mobilis ZM4]
gi|56544149|gb|AAV90303.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 292
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GP +M+A +GA G P GF G TA N PY+ + +F+ RK
Sbjct: 138 SGGGPSIMEAANRGAHDVGAPSIGF--GIVLPFETAPN--PYITPDLSFQFHYFALRKTH 193
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L+ A A PGG GTLDE+FE+L LI R+ + VP L D F+ K
Sbjct: 194 LMLRA--------RAFAIFPGGFGTLDEVFELLTLIHTHRLEA---VPILFYGRD-FWNK 241
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+++F E+ A+D ++ D+ E + + +F+
Sbjct: 242 IINFDALVEESMISAED--LRFFQFVDTAEEGWAVICDFW 279
>gi|296136618|ref|YP_003643860.1| hypothetical protein Tint_2179 [Thiomonas intermedia K12]
gi|295796740|gb|ADG31530.1| conserved hypothetical protein [Thiomonas intermedia K12]
Length = 314
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 20/167 (11%)
Query: 28 SGAGPGLMDAVTKGAMQA-GKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKH 86
+G GPG+M+A +GA +A GK +G V + +PY+ E +F+ RK
Sbjct: 151 TGGGPGIMEAGNRGAFEAQGKSIGLNIVLQHE-----QRPNPYITPELCFQFHYFALRKM 205
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
+ +V A+V PGG GTLDE+FE+L L Q ++ + P+ V+ +SF++
Sbjct: 206 HFLMRSV--------ALVCFPGGFGTLDELFEVLTLTQARKV-RQRPI---VLFGESFWR 253
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
KL++F E G +A +++ L+ ++ +A LA ++L+ D
Sbjct: 254 KLINFDYLVET-GMIAVEDL-DLFHFVETAEQAWDVLARAFELNGAD 298
>gi|408787239|ref|ZP_11198970.1| hypothetical protein C241_14282 [Rhizobium lupini HPC(L)]
gi|408486870|gb|EKJ95193.1| hypothetical protein C241_14282 [Rhizobium lupini HPC(L)]
Length = 298
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GAM AG P G + + A N PY+ E +F+ RK + A
Sbjct: 162 MEAGNRGAMDAGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 215
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ + F++ +++F
Sbjct: 216 ------KAVVVFPGGFGTLDELFEALTLIQTKRMA---PIP-LILFGEKFWRSVVNF-EF 264
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
D+GT+A +++ +L ++ +A ++++Y+
Sbjct: 265 LADFGTIAPEDM-NLLHFAETADDAWKIISDYYE 297
>gi|451940120|ref|YP_007460758.1| hypothetical protein BAnh1_00770 [Bartonella australis Aust/NH1]
gi|451899507|gb|AGF73970.1| hypothetical protein BAnh1_00770 [Bartonella australis Aust/NH1]
Length = 279
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 30/184 (16%)
Query: 17 EIARLLDC----------TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
E ARL C +G GPG+M+A +GA G P G V +
Sbjct: 114 EFARLCSCYSATTEYSEFVVITGGGPGIMEAGNRGATDVGAPTIGLNVVLPHEQVPNIYV 173
Query: 67 HPYLPLE-TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
P L +YL R + H L+ A+ PGG GTLDE+FE+L L+Q
Sbjct: 174 TPNLCFNFSYLGIR----KMHFLMRAK---------ALAIFPGGFGTLDELFEVLTLMQT 220
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
ERI VP L+ + F+K +++F E GT++ + +L + +EA +
Sbjct: 221 ERIKR---VPILMFG-EQFWKNVINFEYLAEQ-GTISPLD-TTLMTFVHTAAEAFEVIRS 274
Query: 186 FYDL 189
FY+L
Sbjct: 275 FYEL 278
>gi|157866726|ref|XP_001681918.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68125369|emb|CAJ03228.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 332
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R D +G GPG M+A GA G +G + +P++
Sbjct: 171 RFHDLVVTTGGGPGFMEAANHGAESVP---GAVTMGMGISLPFENGLNPHVTKGLAFEFH 227
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK ++ SC A+V PGG GTLDEMFE+L L Q ++I S LPV V+
Sbjct: 228 YFFTRKFWMMY------SC--RAIVIAPGGFGTLDEMFELLTLKQTKKIPS-LPV---VL 275
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F++ ++++ ++G ++++E+ SL DS EA+ ++ +FY
Sbjct: 276 LGKEFWQTVVNWQA-LANYGVISQEEIDSLL-FTDSAEEAVEHIKDFY 321
>gi|261328084|emb|CBH11061.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 328
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG M+A KGA G +G + + Y+ T +F
Sbjct: 175 DLVVTTGGGPGFMEAANKGASSVP---GALTMGMGISLPFEAGLNRYVTAGLAFTFHYFF 231
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK ++ SC A+V PGG GT+DE+FE+L L Q +I E P+ V+
Sbjct: 232 TRKFWMMY------SCR--AIVIAPGGFGTMDEVFELLTLRQTRKI-PEFPI---VLFCT 279
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
F+K ++++ E +GT++K+EV SL DS EA++++ F+
Sbjct: 280 KFWKTVVNWEALAE-FGTISKEEVDSLC-FTDSVDEAVAFIRNFF 322
>gi|392946359|ref|ZP_10312001.1| TIGR00730 family protein [Frankia sp. QA3]
gi|392289653|gb|EIV95677.1| TIGR00730 family protein [Frankia sp. QA3]
Length = 284
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P Y Q LG +A +G GPG M+AV +GA +AG G VG
Sbjct: 105 PDDPVYAQGRRLGAALAEA-GFAVITGGGPGAMEAVNRGAQEAG----GLSVG------- 152
Query: 63 ASNFHPYLPLETYL--------TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L + R+F RK + A A V LPGG+GTLD
Sbjct: 153 ---LGIELPYEQRLNDWVDLGVSFRYFFVRKTMFVKYA--------EAFVILPGGLGTLD 201
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
E+FE L L+Q ++ + PV V+ ++ L+++L + K+ + I D
Sbjct: 202 ELFEALTLVQTGKV-TRFPV---VLIGSRYWSGLVEWLRSTVVPAGLIKESDLHILSITD 257
Query: 175 SNSEALSYLAE 185
EA+ + E
Sbjct: 258 DVEEAVRIIVE 268
>gi|260753769|ref|YP_003226662.1| hypothetical protein Za10_1540 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553132|gb|ACV76078.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 292
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GP +M+A +GA G P GF G TA N PY+ + +F+ RK
Sbjct: 138 SGGGPSIMEAANRGAHDVGAPSIGF--GIVLPFETAPN--PYITPDLSFQFHYFALRKTH 193
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L+ A A PGG GTLDE+FE+L LI R+ + VP L D F+ K
Sbjct: 194 LMLRA--------RAFAIFPGGFGTLDEVFELLTLIHTHRLEA---VPILFYGRD-FWNK 241
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+++F E+ A+D ++ D+ E + + +F+
Sbjct: 242 IINFDALVEEGMISAED--LRFFQFVDTAEEGWAVICDFW 279
>gi|148258939|ref|YP_001243524.1| hypothetical protein BBta_7791 [Bradyrhizobium sp. BTAi1]
gi|146411112|gb|ABQ39618.1| hypothetical protein BBta_7791 [Bradyrhizobium sp. BTAi1]
Length = 261
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPGLM+A +GA A P G+ + + + P E ++F+
Sbjct: 104 DNVIATGGGPGLMEAANRGACDADAPSIGYNITLVHEQQPNAYSTP----ELTFRFQYFA 159
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK L A+R + A+V PGG GTLDEMFEIL L Q +I +P L+ ++
Sbjct: 160 IRKMHL---AMRAN-----ALVIFPGGFGTLDEMFEILTLKQTAKISQ---IPILLFDH- 207
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
S+++ LL+ L G +A + SL+ D EA + L E
Sbjct: 208 SYWRSLLN-LDVLVSEGMIAPQDT-SLFMFADDAEEAWALLKE 248
>gi|385209227|ref|ZP_10036095.1| putative Rossmann fold nucleotide-binding protein [Burkholderia sp.
Ch1-1]
gi|385181565|gb|EIF30841.1| putative Rossmann fold nucleotide-binding protein [Burkholderia sp.
Ch1-1]
Length = 339
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA + P G + + +PY+ E +F+ RK
Sbjct: 181 TGGGPGIMEAANRGAYELQAPSIGLNISLPREQ----EPNPYVTPELCFRFHYFAIRKLH 236
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L++ A A V PGG GT DE+FE+L L+Q +I LPV V+ +SF+++
Sbjct: 237 LLERA--------QAAVFFPGGFGTCDELFEVLTLLQTNKI-RRLPV---VLVGESFWRR 284
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++F + G +A + A+L++ C++ ++ S + ++
Sbjct: 285 AINFDFLISE-GMIAPQD-AALFRFCETAADIWSSIVRWH 322
>gi|88859608|ref|ZP_01134248.1| hypothetical protein PTD2_21532 [Pseudoalteromonas tunicata D2]
gi|88818625|gb|EAR28440.1| hypothetical protein PTD2_21532 [Pseudoalteromonas tunicata D2]
Length = 214
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
P+Y + L +A+ + SG GPG+M+A +GA QAG G + E + +N
Sbjct: 47 PYYQHTVTLAQMLAKN-NFAIISGGGPGIMEAANRGAHQAGGISVGLNI--ELPKEQMAN 103
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
+ LP+E R+F RK + ++ V +PGG GTLDE FE L L+Q
Sbjct: 104 PYQTLPIE----FRYFFTRKVMFVKHSL--------GYVCMPGGFGTLDETFEALTLLQT 151
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
R+ S++PV ++ SF++ L+ +L + + + +L+ I D E + L +
Sbjct: 152 GRV-SKMPV---ILFGKSFWQGLVTWLSEQLIANDLIEPIDLTLFTITDDIDEVVEILKQ 207
>gi|338708416|ref|YP_004662617.1| hypothetical protein Zymop_1437 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336295220|gb|AEI38327.1| conserved hypothetical protein [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 291
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 19/170 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GP +M+A +GA P GF G TA N PY+ E +F+ RK
Sbjct: 138 SGGGPSIMEAANRGAADVDAPSIGF--GIVLPFETAPN--PYITPEFSFQFHYFALRKTH 193
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L+ A A PGG GTLDE+FE+L LI +RI PVP L +F++K
Sbjct: 194 LMLRA--------QAFAIFPGGFGTLDEVFELLTLIHTKRIE---PVPILFYG-RAFWEK 241
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
+++F E+ G ++K ++ ++ ++ E + F+ + RVH
Sbjct: 242 IVNFEALAEE-GMISKKDL-DFFQFVETAEEGWEIIRNFWK-NDQTGRVH 288
>gi|441516515|ref|ZP_20998263.1| hypothetical protein GOHSU_04_00930 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441456568|dbj|GAC56224.1| hypothetical protein GOHSU_04_00930 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 264
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 21/172 (12%)
Query: 12 FELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+++G ++ R L +S G GPG M+A +GA +AG G +G + +P
Sbjct: 102 YQMGVDLGRALVEAGYSVITGGGPGAMEATNRGAFEAG----GESIGLNIELPFEQHMNP 157
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
YL + + R+F RK + A A + LPGGVGTLDE+FE + L+Q ++
Sbjct: 158 YLTVG--MNFRYFFVRKTMFVKYA--------QAFICLPGGVGTLDELFEAVTLVQTGKV 207
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
+ P+ V+ F+ LLD++ + G++ E L + D+ EA+
Sbjct: 208 -TRFPI---VLVGREFWGPLLDWMRESLLAGSMISPEDMGLISLVDTVEEAV 255
>gi|424888909|ref|ZP_18312512.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393174458|gb|EJC74502.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2012]
Length = 288
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IVNFDALAE-FGTIAPDDV-KLISFVDTAEAAWKIIQDFYE 285
>gi|302524328|ref|ZP_07276670.1| lysine decarboxylase [Streptomyces sp. AA4]
gi|302433223|gb|EFL05039.1| lysine decarboxylase [Streptomyces sp. AA4]
Length = 261
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 22/141 (15%)
Query: 4 DHPHYLQSFELGGEI-ARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP Y ELG +I A L D +G GPG M+AV +GA +AG GF VG
Sbjct: 90 DHPEY----ELGRKIGAALADAGFAVMTGGGPGAMEAVNRGANEAG----GFSVGLGIEL 141
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+P++ L + R+F ARK + + A + LPGG GTLDE+FE L
Sbjct: 142 PFEQGLNPWVDLG--VNFRYFFARKTMFVKYS--------QAFICLPGGFGTLDELFEAL 191
Query: 121 ALIQLERIGSELPVPFLVMNY 141
L+Q +++ ++ PV Y
Sbjct: 192 TLVQTKKV-TKFPVVLFGTEY 211
>gi|363581466|ref|ZP_09314276.1| hypothetical protein FbacHQ_08263 [Flavobacteriaceae bacterium
HQM9]
Length = 229
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP Y + ++ I + +G GPG+M+A KGA +AG G + ++
Sbjct: 53 EHPFYQLATDIAANIVKH-GYGVITGGGPGIMEAANKGAFEAGGTSVGLNIDLPFEQFD- 110
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + L +F RK + + V +PGG GTLDE+FE + LI
Sbjct: 111 ---NPYVDRDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITLI 159
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALS 181
Q ++ PV ++ F+ L +++ + + +G ++ ++ L + D+ + +
Sbjct: 160 QTNKV-DNFPV---ILVCTEFWGGLFEWIKNTLLDSFGNISPGDL-DLVHLVDTPEQVIE 214
Query: 182 YLAEFYDLSSI 192
L +FYD +++
Sbjct: 215 ILDKFYDKNNL 225
>gi|85819004|gb|EAQ40163.1| possible lysine decarboxylase [Dokdonia donghaensis MED134]
Length = 229
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDH +Y + E+ +IA +G GPG+M+A +GA AG G VG
Sbjct: 52 PDHKYYKLAVEVAEKIADN-GYGVITGGGPGIMEAGNRGAHLAG----GTSVGLNIELPF 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 107 EQHDNPYIDSDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITL 158
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +I + P+ ++ F+ L+D++ + + + ++ ++ L + D++ E +
Sbjct: 159 IQTHKI-QKFPI---ILVGTEFWGGLMDWVKETLLDSFNNISAGDM-DLIHLVDTSDEVI 213
Query: 181 SYLAEFYD 188
L FYD
Sbjct: 214 EVLNNFYD 221
>gi|424898034|ref|ZP_18321608.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2297]
gi|393182261|gb|EJC82300.1| putative Rossmann fold nucleotide-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2297]
Length = 288
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IVNFDALAE-FGTIAPDDV-KLISFVDTAEAAWKIIQDFYE 285
>gi|389805694|ref|ZP_10202841.1| hypothetical protein UUA_00595 [Rhodanobacter thiooxydans LCS2]
gi|388446935|gb|EIM02949.1| hypothetical protein UUA_00595 [Rhodanobacter thiooxydans LCS2]
Length = 284
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +AG G + + S P L + +F+
Sbjct: 132 DFVVVTGGGPGIMEAANRGAHEAGARSIGLNITLPREQLPNSWITPELAFRFH----YFA 187
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+VA PGG GTLDE+FE+L L+Q ++ LP+ V+ +
Sbjct: 188 VRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTGKM-PRLPI---VLVGN 235
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+F+++ D E A D A L+ + ++ +A++ + FY
Sbjct: 236 AFWRRACDLEFLLEQGMINAGD--AELFSVVENAEQAVATMHAFY 278
>gi|229493850|ref|ZP_04387623.1| lysine decarboxylase family protein [Rhodococcus erythropolis
SK121]
gi|453073345|ref|ZP_21976285.1| hypothetical protein G418_30459 [Rhodococcus qingshengii BKS 20-40]
gi|226186774|dbj|BAH34878.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229319237|gb|EEN85085.1| lysine decarboxylase family protein [Rhodococcus erythropolis
SK121]
gi|452756109|gb|EME14526.1| hypothetical protein G418_30459 [Rhodococcus qingshengii BKS 20-40]
Length = 267
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ELG +A +G GPG+M+A +G +AG G+ +G
Sbjct: 88 DHPEYQSGRELGTALAEA-GYAVITGGGPGVMEAANRGCSEAG----GYSIGLGIELPFE 142
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ L + R+F ARK + + A + LPGG GTLDE+FE L L+
Sbjct: 143 QGLNEWVDLG--INFRYFFARKTMFVKYS--------QAFICLPGGFGTLDELFEALTLV 192
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q ++ + P+ Y + L+D++ G E G +++ +V +L + DS EA+
Sbjct: 193 QTHKV-TRFPIVLFGTEY---WSGLVDWIRGTLERDGKISEGDV-NLLHVTDSVEEAVRI 247
Query: 183 L 183
+
Sbjct: 248 V 248
>gi|334565102|ref|ZP_08518093.1| hypothetical protein CbovD2_11054 [Corynebacterium bovis DSM 20582]
Length = 281
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y Q ELG I +G GPGLM+A +G +AG G VG
Sbjct: 81 DHPYYRQGVELGRRIHEA-GYAVITGGGPGLMEAPNRGCQEAG----GLSVGLGIELPHE 135
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ L L R+F RK + + A + LPGG GTLDE+FE L ++
Sbjct: 136 QRLNDWVGLG--LNFRYFFVRKTMFLKYS--------QAFICLPGGFGTLDELFEALVMV 185
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSEALS 181
Q +I S P+ V+ F+ L+D++ ED A+D L + DS EA+
Sbjct: 186 QTGKI-SRFPI---VLIGTEFWGGLVDWIRTRLIEDGMISAED--PDLLVVTDSVEEAVE 239
Query: 182 YLAEFY 187
+ A +
Sbjct: 240 HCARAH 245
>gi|116073776|ref|ZP_01471038.1| hypothetical protein RS9916_35037 [Synechococcus sp. RS9916]
gi|116069081|gb|EAU74833.1| hypothetical protein RS9916_35037 [Synechococcus sp. RS9916]
Length = 218
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 12 FELGGEIARLLDCTTWS----------GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
+E E A L+ C S G GPG+M+A +GA AG GF + +
Sbjct: 43 YEAAREFAHLVSCAQRSEQGCNLVIATGGGPGIMEAANRGAFDAGFKSIGFNISLPHEQR 102
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+P++ E +F+ RK + AV V PGG GTLDE+FE+L
Sbjct: 103 P----NPFVTPELCFRFNYFALRKFHFVMRAV--------GSVFFPGGFGTLDELFEVLT 150
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L Q G + P+P ++ D +++++++F D G + D + L + D+ SEA
Sbjct: 151 LRQ---TGIKGPIPVVLFGRD-YWQEVINF-NALADSGLIGDDHL-DLIQFADTPSEA 202
>gi|390942687|ref|YP_006406448.1| hypothetical protein Belba_1054 [Belliella baltica DSM 15883]
gi|390416115|gb|AFL83693.1| TIGR00730 family protein [Belliella baltica DSM 15883]
Length = 243
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVGGFKVGKEAGEWT 62
+H +Y + E+ ++ R +G GPG+M+A KGA + GK VG V
Sbjct: 68 EHRYYKMAEEIAAKLVRH-GYGVITGGGPGIMEAGNKGAHSENGKSVGVNIV------LP 120
Query: 63 ASNFHP-YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
F+ Y+ + +T +F RK A V LPGG GTLDE+FE L
Sbjct: 121 FEQFNNIYIDPDKLITFNYFFVRKVMFTKYA--------QGFVVLPGGFGTLDELFEALT 172
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
LIQ +IG P+ V+ S++ L+D+L +E L+ + + SEA+
Sbjct: 173 LIQTNKIG-RFPI---VLVGKSYWSGLVDWLKATMLENKNINEEDLELFSVVEDASEAVK 228
Query: 182 YLAEFY 187
+ EFY
Sbjct: 229 VIDEFY 234
>gi|399116302|emb|CCG19107.1| conserved hypothetical protein [Taylorella asinigenitalis 14/45]
Length = 222
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 21/179 (11%)
Query: 12 FELGGEIARLLDC---TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+ L +I+R L T SG GPG+M+A +GA + V G +G + +P
Sbjct: 49 YALTTDISRKLASAGFTIISGGGPGIMEAANRGAHE----VNGHSIGLNIKLPHETTNNP 104
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y Y ++F +RK + A + +PGG GT+DE+FE L L+Q
Sbjct: 105 YQSQSIYF--KYFVSRKTTFF--------MNSWAYIIMPGGFGTMDELFEALTLVQ---T 151
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
G P +++ + F+K LLDF+ + + + L + D E L + E+Y
Sbjct: 152 GKANKAPIILVGSE-FWKGLLDFIKNGQLANGYISPKDLDLISVTDDADEVLKIVTEYY 209
>gi|344204518|ref|YP_004789661.1| hypothetical protein [Muricauda ruestringensis DSM 13258]
gi|343956440|gb|AEM72239.1| Conserved hypothetical protein CHP00730 [Muricauda ruestringensis
DSM 13258]
Length = 230
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
HP+Y + ++ +IA +G GPG+M+A KGA AG G VG
Sbjct: 56 HPYYDLAVKISKKIAEA-GYGVITGGGPGIMEAGNKGANLAG----GTSVGLNIELPFEQ 110
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+ +PY+ + L +F RK + + V +PGG GTLDE FE L LIQ
Sbjct: 111 HDNPYIDDDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDEFFEALTLIQ 162
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSEALSY 182
+I + P +++ + F+K L+D++ + E AKD L K+ D+ E +
Sbjct: 163 THKIHT---FPIILVGTE-FWKGLMDWIKNTLVEAGNISAKD--LDLIKLVDTEDEVVEI 216
Query: 183 LAEFY 187
+ FY
Sbjct: 217 IDAFY 221
>gi|334132160|ref|ZP_08505921.1| hypothetical protein METUNv1_02994 [Methyloversatilis universalis
FAM5]
gi|333442806|gb|EGK70772.1| hypothetical protein METUNv1_02994 [Methyloversatilis universalis
FAM5]
Length = 242
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 43/201 (21%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDHP+Y +L IAR L + SG GPG+M+A KGA P G +
Sbjct: 59 PDHPYY----DLTERIARQLSDAGFSVISGGGPGIMEAANKGAFHGKSPSVGLNI----- 109
Query: 60 EWTASNFHPYLPLETYLTC--------RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVG 111
LP+E + F ARK+ + A A V +PGG G
Sbjct: 110 ---------QLPMEQHANVYQDISHSFEHFFARKYMFVRFA--------AAYVVMPGGFG 152
Query: 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLW 170
T+DE+ E L LIQ R +PV ++ + F+ L+D F + G ++ ++ L
Sbjct: 153 TVDELMEALTLIQ-TRKSRSIPV---ILVHSPFWAGLIDWFRNTLVNEGMISPADM-DLV 207
Query: 171 KICDSNSEALSYLAEFYDLSS 191
+I D ++ + + Y+ S
Sbjct: 208 QIIDDPAQIVDAIFRHYENRS 228
>gi|386332867|ref|YP_006029036.1| 3-isopropylmalate dehydrogenase [Ralstonia solanacearum Po82]
gi|334195315|gb|AEG68500.1| 3-isopropylmalate dehydrogenase [Ralstonia solanacearum Po82]
Length = 329
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 147 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 198
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 199 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 248
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ + +I D EA
Sbjct: 249 TLVQ---TGKSRSVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKEA 303
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 304 LDAVYEFYE 312
>gi|384564596|ref|ZP_10011700.1| TIGR00730 family protein [Saccharomonospora glauca K62]
gi|384520450|gb|EIE97645.1| TIGR00730 family protein [Saccharomonospora glauca K62]
Length = 257
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ++G +A +G GPG+M+AV +GA +AG G +G
Sbjct: 86 DHPEYQLGRQIGAALASAGFAAI-TGGGPGVMEAVNRGASEAG----GLSIGLGIELPFE 140
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L + R+F ARK + A A + LPGG GTLDE+FE L L+
Sbjct: 141 QGLNPWVDLG--VNFRYFFARKTMFVKYA--------QAFICLPGGFGTLDELFEALTLV 190
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ ++ PV V+ S++ L D++ + + +L + D +A+ +
Sbjct: 191 QTKKV-TKFPV---VLFGSSYWGGLYDWIRNTMLAEGKINERDLALLHVTDDIDDAIGVV 246
Query: 184 AEFY 187
E Y
Sbjct: 247 QEAY 250
>gi|383765522|ref|YP_005444503.1| hypothetical protein PSMK_04470 [Phycisphaera mikurensis NBRC
102666]
gi|381385790|dbj|BAM02606.1| hypothetical protein PSMK_04470 [Phycisphaera mikurensis NBRC
102666]
Length = 245
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 22/197 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P + Q+ ++ D +G GPG+M A KGA +AG G VG
Sbjct: 53 DDPVFAQAVACARKVVER-DFAVITGGGPGIMTAGNKGAHEAG----GQSVGLNIKLPHE 107
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ +PY L R+F RK + A + PGG GTLDE+FE L LI
Sbjct: 108 QSGNPYQ--NVSLDFRYFFVRKVMFVKYA--------CGFIIFPGGFGTLDELFESLTLI 157
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALS 181
Q +I P P + + +D F+ LLD++ + E + T++ ++ L + D EA++
Sbjct: 158 QTMKI---RPFPVVCVGHD-FWDGLLDWIRETLDEKYRTISHADL-DLIHVTDDLDEAVA 212
Query: 182 YLAEFYDLSSIDKRVHE 198
+ +D KRV E
Sbjct: 213 QIQGCFDPGEYAKRVAE 229
>gi|83746522|ref|ZP_00943573.1| 3-isopropylmalate dehydrogenase [Ralstonia solanacearum UW551]
gi|83726853|gb|EAP73980.1| 3-isopropylmalate dehydrogenase [Ralstonia solanacearum UW551]
Length = 329
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 147 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 198
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 199 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 248
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ + +I D EA
Sbjct: 249 TLVQ---TGKSRSVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKEA 303
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 304 LDAVYEFYE 312
>gi|207743835|ref|YP_002260227.1| hypothetical protein 730 [Ralstonia solanacearum IPO1609]
gi|421897736|ref|ZP_16328103.1| conserved hypothetical protein 730 [Ralstonia solanacearum MolK2]
gi|206588942|emb|CAQ35904.1| conserved hypothetical protein 730 [Ralstonia solanacearum MolK2]
gi|206595235|emb|CAQ62162.1| conserved hypothetical protein 730 [Ralstonia solanacearum IPO1609]
Length = 318
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 136 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 187
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 188 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 237
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ + +I D EA
Sbjct: 238 TLVQ---TGKSRSVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKEA 292
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 293 LDAVYEFYE 301
>gi|41582345|gb|AAS07959.1| conserved hypothetical protein TIGR00730 [uncultured marine
bacterium 463]
Length = 221
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD Y+ + +L AR+L T +G GPG+M+A GA G+P + E
Sbjct: 51 PDAWEYVAAHDL----ARMLASEGITVVTGGGPGVMEAGNSGA--KGQPGASVGLNIELP 104
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+N PYL ++ L R+F RK LI A+ PGG GT+DE+FE+
Sbjct: 105 HEQLAN--PYLDID--LDFRYFFTRKFLLIRYAI--------GFAIFPGGFGTVDELFEL 152
Query: 120 LALIQLERIGSELPVPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q ++ + P+ + Y Y+ LL+ + G ++ D++ + +I DS E
Sbjct: 153 LTLVQTGKL-TRRPIVLVGREYWSGLYQWLLE---QVQSKGFISDDDL-DIVEIVDSAEE 207
Query: 179 ALSYLAEFY 187
A + L E+Y
Sbjct: 208 AAAILLEYY 216
>gi|359689883|ref|ZP_09259884.1| hypothetical protein LlicsVM_15897 [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748542|ref|ZP_13304834.1| TIGR00730 family protein [Leptospira licerasiae str. MMD4847]
gi|418757575|ref|ZP_13313762.1| TIGR00730 family protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384115352|gb|EIE01610.1| TIGR00730 family protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404275611|gb|EJZ42925.1| TIGR00730 family protein [Leptospira licerasiae str. MMD4847]
Length = 257
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 13 ELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPL 72
E+ + R+ CT G GPG+M+A +GA P G + ++ +PY+
Sbjct: 98 EISKDTRRMAVCT---GGGPGIMEAANRGAKDEDGPSLGLNIRLPFEQFV----NPYVDP 150
Query: 73 ETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 132
E + +F RK + ++ VVA PGG GT+DE+FE L LIQ R ++
Sbjct: 151 EISVEFHYFFMRKLWFLRLSM--------GVVAFPGGFGTVDELFETLTLIQTGRNNRKI 202
Query: 133 PVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
PV ++ F++++ L D+G + +++ L CD+ + L L +
Sbjct: 203 PV---ILYGTKFWREIFH-LESMIDYGLIEAEDL-ELITYCDTPEDVLETLKK 250
>gi|374367614|ref|ZP_09625675.1| hypothetical protein OR16_17387 [Cupriavidus basilensis OR16]
gi|373100917|gb|EHP41977.1| hypothetical protein OR16_17387 [Cupriavidus basilensis OR16]
Length = 239
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL SG GPG+M+A KGA AGK VG
Sbjct: 57 DSPYYQRTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 108
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 109 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 158
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +V+ F+K LLD F G +A+ ++ L KI D E
Sbjct: 159 TLVQ---TGKSRSVP-VVLFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMKIVDEPHEV 213
Query: 180 LSYLAEFYD 188
L + E+Y+
Sbjct: 214 LEAVYEYYE 222
>gi|15805498|ref|NP_294194.1| hypothetical protein DR_0471 [Deinococcus radiodurans R1]
gi|6458157|gb|AAF10050.1|AE001906_6 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 256
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M A +GA +AG G VG +PY L L +F ARK
Sbjct: 90 TGGGPGIMQAANQGAYEAG----GVSVGLNIVLPHEQRHNPYQTLS--LEFEYFHARKVM 143
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L A A VA PGG GTLDEM EIL L+Q ++ PVP + ++ ++
Sbjct: 144 LARYA--------HAFVAFPGGFGTLDEMMEILTLVQTRKM---RPVPIYFVG-EAHWRG 191
Query: 148 LLD-FLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
L++ F + G +A D++ L+K+ D S+ + + ++D + D
Sbjct: 192 LVEWFRTSLVENGAIAADDL-KLFKLVDDVSQIPADVRAYHDPGAGD 237
>gi|451948896|ref|YP_007469491.1| TIGR00730 family protein [Desulfocapsa sulfexigens DSM 10523]
gi|451908244|gb|AGF79838.1| TIGR00730 family protein [Desulfocapsa sulfexigens DSM 10523]
Length = 227
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP Y + ++ +AR +G GPGLM+A KGA +AG G VG
Sbjct: 61 EHPWYKLTEQIAAGLARE-GYGVITGGGPGLMEAANKGADEAG----GISVGLNIALPHE 115
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY + + ++F RK + ++ A + +PGG G+LDE+FE L LI
Sbjct: 116 QEPNPYANMS--IQFKYFFVRKVMFMKYSM--------AFICMPGGFGSLDELFESLTLI 165
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSY 182
Q +RI P P +++ SF+ L+D+L + GT++K ++ ++ I D E + +
Sbjct: 166 QTQRIE---PFPIILVG-SSFWGGLIDWLKEQFLSNGTISKTDLDLIY-IMDDPLEVVDF 220
Query: 183 L 183
+
Sbjct: 221 I 221
>gi|359399208|ref|ZP_09192213.1| hypothetical protein NSU_1899 [Novosphingobium pentaromativorans
US6-1]
gi|357599414|gb|EHJ61127.1| hypothetical protein NSU_1899 [Novosphingobium pentaromativorans
US6-1]
Length = 290
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ +F+ RK H
Sbjct: 144 SGGGPSIMEAANRGAADVGAESLGLNIVLPHEQ--APN--PYVTPRLSFQFHYFALRKMH 199
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GTLDE E+L LIQ G P+P L+ + F++
Sbjct: 200 FLLRA---------RAVAVFPGGFGTLDEFLELLTLIQ---TGKMKPIPILLYGRE-FWE 246
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++++F E+ GT+ ++ L+ C++ + + + EFYDL
Sbjct: 247 RIINFEALAEE-GTINASDL-DLFHWCETGEDGWARIREFYDL 287
>gi|449133300|ref|ZP_21768946.1| decarboxylase family protein [Rhodopirellula europaea 6C]
gi|448887921|gb|EMB18266.1| decarboxylase family protein [Rhodopirellula europaea 6C]
Length = 357
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 34/211 (16%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
PD P Y + +LG R + W +GAG G+M+A KGA + + E
Sbjct: 92 APDRPDYQAAVDLG----RRMAAHGWMVITGAGGGIMEAGHKGAGRDASMGLNIMLPFEQ 147
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
G P L +T ++F RK L +C + +V LPGG GTLDE
Sbjct: 148 GANEYIENDPKL-----VTLKYFFTRKLMFLKEC---------SGIVCLPGGFGTLDEGL 193
Query: 118 EILALIQLERIGSELPVPFLVMNYD--SFYKKLLDFLGD---CEDWGTVAKDEVASLWKI 172
E+L L+Q G + +P + +++ S++K L F+ C G ++ ++VA L+KI
Sbjct: 194 EVLTLLQ---TGKQTMMPLIFLDHPGGSYWKDLGKFIDKQLMCN--GMISPEDVA-LYKI 247
Query: 173 CDSNSEALSYLAEFYDLSSIDKRV-HEVNLK 202
+S EA+ L FYD+ + V H++ L+
Sbjct: 248 TNSVDEAVEELLTFYDVYHSQRYVGHQLVLR 278
>gi|217968975|ref|YP_002354209.1| hypothetical protein Tmz1t_0540 [Thauera sp. MZ1T]
gi|217506302|gb|ACK53313.1| conserved hypothetical protein [Thauera sp. MZ1T]
Length = 299
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 16/124 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA +AG G + E A N PY+ E +F+ RK
Sbjct: 143 TGGGPGIMEAGNRGAFEAGGRSMGMSIFLPFEE--APN--PYITPELCFQFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ AV A+V+ PGG+GTLDE+FE+L L Q +I P +++ D F+++
Sbjct: 199 FLMRAV--------ALVSFPGGLGTLDELFEVLTLTQTRKIRRR---PIVLIGRD-FWQR 246
Query: 148 LLDF 151
L+DF
Sbjct: 247 LIDF 250
>gi|410031470|ref|ZP_11281300.1| hypothetical protein MaAK2_19809 [Marinilabilia sp. AK2]
Length = 244
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 24/187 (12%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAGEWT 62
HPHY+ + E+ ++ R +G GPG+M+A KGA + GK VG K+ EA
Sbjct: 69 HPHYIMAEEISAKLVRH-GYGVITGGGPGIMEAANKGANSENGKSVGLCIKLPFEA---- 123
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ Y+ + ++ +F RK + V LPGG GTLDE+FE L L
Sbjct: 124 --KGNIYIDPDKLISFDYFFVRKVMFTKYS--------QGFVVLPGGFGTLDELFEALTL 173
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +IG P+ V+ F+ LLD++ + + +++ L+ + D +EA+
Sbjct: 174 IQTIKIG-RYPI---VLVGKEFWGGLLDWIKSTLLQQHAYINAEDL-DLFYVVDDATEAV 228
Query: 181 SYLAEFY 187
+ EFY
Sbjct: 229 KVIDEFY 235
>gi|114800137|ref|YP_761069.1| hypothetical protein HNE_2374 [Hyphomonas neptunium ATCC 15444]
gi|114740311|gb|ABI78436.1| conserved hypothetical protein TIGR00730 [Hyphomonas neptunium ATCC
15444]
Length = 250
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA AG GF + + A N PY+ + +F+
Sbjct: 97 DNVIATGGGPGIMEAANRGARDAGAVTIGFNI--QLPHEQAPN--PYITSQLSFQFHYFA 152
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A+R A+V PGG GT+DE+FE+L L Q + G +PV V+
Sbjct: 153 MRK---MHLAMRA-----RALVIFPGGFGTMDELFELLTLSQTGK-GHHMPV---VLYDR 200
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
F+ ++++F D G ++ D++ L++ D EA L
Sbjct: 201 DFWTRIINFEA-LADAGVISPDDL-KLFEFADDPEEAWESL 239
>gi|87309150|ref|ZP_01091287.1| hypothetical protein DSM3645_05430 [Blastopirellula marina DSM
3645]
gi|87288141|gb|EAQ80038.1| hypothetical protein DSM3645_05430 [Blastopirellula marina DSM
3645]
Length = 284
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +A P G + + +PY+ E +F+
Sbjct: 131 DYVIVTGGGPGVMEAANRGAFEAEAPTIGLNITLPDEQHP----NPYVTPELCFLFHYFA 186
Query: 83 ARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141
RK H L+ A+V PGG GTLDE+F+ L L Q +R+ E+P+ ++
Sbjct: 187 MRKMHFLVRA---------KALVVFPGGYGTLDELFDALTLRQTQRM-QEIPI---ILYG 233
Query: 142 DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++K++++F D G + +D+ L DS ++A +A ++
Sbjct: 234 SDYWKQVVNFQF-LADEGVI-RDDHLDLVSFADSPAQAWDIIAHYH 277
>gi|296138888|ref|YP_003646131.1| hypothetical protein [Tsukamurella paurometabola DSM 20162]
gi|296027022|gb|ADG77792.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length = 264
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 29/186 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG- 59
PD P Y ELG + R +G GPG M+A +GA A G VG G ++ E G
Sbjct: 84 PDSPEYATGRELGAGLVRA-GYAVITGGGPGAMEAANRGAKDADGLSVGLGIELPFEQGL 142
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W ++ + R+F RK + A A V LPGG GTLDE+FE
Sbjct: 143 NDW----------VDLGINFRYFFVRKTMFVKYA--------QAFVCLPGGFGTLDELFE 184
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNS 177
L L+Q ++ + P+ V+ +++ L+D++ G + G V+ + A L + DS +
Sbjct: 185 ALTLVQTHKV-TRFPI---VLLGSAYWGGLVDWIRGTLTEQGMVSPGD-ADLITVTDSVA 239
Query: 178 EALSYL 183
EA+ +
Sbjct: 240 EAIDII 245
>gi|393723653|ref|ZP_10343580.1| hypothetical protein SPAM2_08378 [Sphingomonas sp. PAMC 26605]
Length = 307
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA +AG G + + A N PY+ + +F+ RK H
Sbjct: 162 SGGGPSIMEAANRGAAEAGYESVGLNIVLPHEQ--APN--PYVTPALSMQFHYFALRKMH 217
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ A PGG GT DE+FE+L LIQ +I P+P L+ F++
Sbjct: 218 FLLHA---------RALAAFPGGFGTFDELFELLTLIQTGKIA---PIPVLLYG-RKFWE 264
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++++F E+ AKD ++ ++ E + + EFY
Sbjct: 265 RVVNFEALVEEGVVSAKD--LGIFTFVETAEEGWAVVKEFY 303
>gi|325105754|ref|YP_004275408.1| hypothetical protein [Pedobacter saltans DSM 12145]
gi|324974602|gb|ADY53586.1| Conserved hypothetical protein CHP00730 [Pedobacter saltans DSM
12145]
Length = 248
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 10 QSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
Q +++ E++R L D +G GPG+M+A +GA K G +G N
Sbjct: 60 QYYKMAREVSRQLAERDFAIMTGGGPGIMEAANRGA----KDANGLSLGCNIVLPHEQNH 115
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PY+ + ++T +F RK L + A V PGG GTLDE FE + LIQ
Sbjct: 116 NPYM--DRFVTLGYFFVRKELLRKYSF--------AFVICPGGFGTLDEFFETVTLIQTG 165
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+I P +VM + F++ + + + + T++++++ L DS EA+ ++ F
Sbjct: 166 KIER---FPIVVMGRE-FHRHVEEHINLMAEQKTISEEDL-HLILFTDSIDEAVQHITTF 220
>gi|121602626|ref|YP_989570.1| hypothetical protein BARBAKC583_1322 [Bartonella bacilliformis
KC583]
gi|421761369|ref|ZP_16198172.1| hypothetical protein BbINS_06252 [Bartonella bacilliformis INS]
gi|120614803|gb|ABM45404.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
gi|411173153|gb|EKS43201.1| hypothetical protein BbINS_06252 [Bartonella bacilliformis INS]
Length = 272
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 34/194 (17%)
Query: 10 QSFELGGEIARLLDCTTWS------------GAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
Q ++ E ARL C+ +S G GPG+M+A +GA+ P G V
Sbjct: 100 QYYDEAREFARL--CSRYSATTGYREFVIVTGGGPGVMEAGNRGAVDVDAPTIGLNVVLP 157
Query: 58 AGEWTASNFHPYLPLE-TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
+ P+L YLT R + H LI A+ PGG GTLDE+
Sbjct: 158 HEQTPNIYVSPHLCFNFHYLTMR----KTHFLIRAK---------ALAVFPGGFGTLDEL 204
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
FE L L+Q R+ VP L+ F+K L++F + G ++ ++ L D+
Sbjct: 205 FEALTLMQTRRMQK---VPILMFG-KKFWKNLINF-DYLSEQGVISPTDI-DLLTFVDTA 258
Query: 177 SEALSYLAEFYDLS 190
+EA + FY L+
Sbjct: 259 AEAFEEIRSFYQLA 272
>gi|387824878|ref|YP_005824349.1| hypothetical protein FN3523_1295 [Francisella cf. novicida 3523]
gi|332184344|gb|AEE26598.1| hypothetical protein FN3523_1295 [Francisella cf. novicida 3523]
Length = 237
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 35/179 (19%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 82 TGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ------RPNRYQDIFLIYRYFFTRKAM 135
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ Y K
Sbjct: 136 FIKHSM--------SYIVMPGGFGTLDELFDITTLIQ---TGKKVKMPIIL------YGK 178
Query: 148 LLDFLGDCEDW--------GTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHE 198
DF G +W G V+K+EV +L + DS E + +AE Y + + + HE
Sbjct: 179 --DFWGGLMEWIKTTLVTKGVVSKEEV-NLLTLVDSIDETIEIIAEHY-MHTYSSKAHE 233
>gi|283778839|ref|YP_003369594.1| hypothetical protein Psta_1051 [Pirellula staleyi DSM 6068]
gi|283437292|gb|ADB15734.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length = 719
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA G G + + + P L + R+F+
Sbjct: 564 DYVVVTGGGPGIMEAANRGAFDVGAKSIGLNITLPHEQTPNAYITPQLCFQ----FRYFA 619
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+V PGG GTLDE+FE+L L Q +R+ E+PV ++
Sbjct: 620 LRKMHFLMRA--------KALVVFPGGFGTLDELFEVLTLRQTQRM-QEIPV---ILYGR 667
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191
++ ++DF D G +A DE +L + +S +EA + F L +
Sbjct: 668 DYWSNVIDF-QYLADEGVIA-DEHLNLIQFAESPNEAWDIITRFNKLRA 714
>gi|409435834|ref|ZP_11263042.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
gi|408752592|emb|CCM74189.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
Length = 288
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APNV--YVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ ++P L++ + F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-EKMP---LILFGEKFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IVNFEALAE-FGTIAPDDV-DLISFVDTADAAWKIIQDFYE 285
>gi|401400995|ref|XP_003880907.1| hypothetical protein NCLIV_039490 [Neospora caninum Liverpool]
gi|325115319|emb|CBZ50874.1| hypothetical protein NCLIV_039490 [Neospora caninum Liverpool]
Length = 361
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 13 ELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQA--GKPVG-GFKVGKEAGEWTASNFH 67
E G + +L+ C +G GPGLM+A KGA + + +G G + E G +
Sbjct: 179 ESGSQSQQLVYCPVAICTGGGPGLMEAANKGASEVPGARTIGMGISLPFENG------LN 232
Query: 68 PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLER 127
Y+ E ++ ARK +++ A+ V+A PGG GTLDE+ E++AL Q +
Sbjct: 233 QYVTKELGFEFQYLFARKFWMVNTAL--------GVIAAPGGFGTLDELMEVIALKQTNK 284
Query: 128 IGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+ ++P+ L Y + +++F E +GT+ K + L+ + D A Y+ F
Sbjct: 285 LKRDIPIVLLGKTY---WTSIINFDKMVE-FGTINKKDCDQLF-LTDDEDVAFEYIRSF 338
>gi|119478464|ref|ZP_01618449.1| lysine decarboxylase family protein [marine gamma proteobacterium
HTCC2143]
gi|119448550|gb|EAW29797.1| lysine decarboxylase family protein [marine gamma proteobacterium
HTCC2143]
Length = 226
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 26/185 (14%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG---EWTA 63
HY Q E G I +G GPG+M+AV +GA GK G VG E A
Sbjct: 54 HYSQQAETLGRILSASGLAVITGGGPGIMEAVNRGAF-GGK---GMSVGLNIDLPREQVA 109
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+N+ + L R+F RK + AV V PGG GT+DE+FE L L+
Sbjct: 110 NNYQ-----DISLDFRYFFVRKFLFVKHAV--------GFVIFPGGYGTMDELFEALTLV 156
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSY 182
Q ++ P P +++ S++ L+D+L G + +D++ L+ + D+ EA
Sbjct: 157 QTGKVD---PFPIVLIGV-SYWSGLIDWLQQTMLSEGCITQDDM-ELFHLVDTPEEAADI 211
Query: 183 LAEFY 187
+ ++
Sbjct: 212 VLRYH 216
>gi|296119447|ref|ZP_06838005.1| methionyl-tRNA formyltransferase [Corynebacterium ammoniagenes DSM
20306]
gi|295967330|gb|EFG80597.1| methionyl-tRNA formyltransferase [Corynebacterium ammoniagenes DSM
20306]
Length = 245
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
P Y Q+ +L ++ D +G GPG+M+A +GA +AG G VG
Sbjct: 68 PEYGQAVDLAAKLVDQ-DYAVVTGGGPGIMEAANRGAYEAG----GLSVGLGIELPFEQG 122
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
+ Y+ L + R+F ARK + + A V LPGG+GT+DE+FE+L ++Q
Sbjct: 123 LNKYVDLG--INFRYFFARKTMFLKYS--------QAFVCLPGGMGTMDELFEMLCMVQT 172
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++ + P+ + Y + L+D++ + + L+ + DS EA+ ++
Sbjct: 173 GKV-TNYPIVLIGTEY---WSGLVDWMANTLVADGYINPQDMDLFLLTDSVDEAVEHIVA 228
Query: 186 FYDLSSIDKRVHEVN 200
+ D+RV +N
Sbjct: 229 AHK-EMTDERVRRLN 242
>gi|404423662|ref|ZP_11005295.1| hypothetical protein MFORT_24297 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403653461|gb|EJZ08440.1| hypothetical protein MFORT_24297 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 245
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P P Y ELG + R +G GPG M+AV +GA ++G G+ VG
Sbjct: 79 PHSPEYRLGEELGIALVRA-GYAVITGGGPGSMEAVNRGASESG----GYSVG------- 126
Query: 63 ASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L R+F RK + A A V LPGG GTLD
Sbjct: 127 ---LGIELPFEQRLNHWVDLGINFRYFFVRKTMFVKYA--------QAFVCLPGGFGTLD 175
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
E+FE L L+Q ++ +E P+ L ++Y + L+D++ + G + +L D
Sbjct: 176 ELFEALTLVQTHKV-TEFPIILLGVDY---WSGLIDWIRNTMLRGGKISESDLALLHCTD 231
Query: 175 SNSEALSYL 183
S +EA+ +
Sbjct: 232 SVAEAVELI 240
>gi|302877442|ref|YP_003846006.1| hypothetical protein Galf_0197 [Gallionella capsiferriformans ES-2]
gi|302580231|gb|ADL54242.1| Conserved hypothetical protein CHP00730 [Gallionella
capsiferriformans ES-2]
Length = 238
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 25/194 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD P+Y +L EIARLL + SG GPG+M+A KGA P G +
Sbjct: 55 PDQPYY----KLAEEIARLLSDAGFSVISGGGPGIMEAANKGAFYGKSPSVGLNIQLPHE 110
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ SN +PY + + + F ARK + A A V +PGG GTLDE+ E
Sbjct: 111 Q---SN-NPYQNISQ--SFQHFFARKVMFVKFA--------NAYVVMPGGFGTLDELMEA 156
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q G +P +++ F+ ++++ V E L ++ D E
Sbjct: 157 LTLVQ---TGKTRRIPIILVG-SKFWGGMIEWFKTALIEEKVIHPEDMELIQLIDEPQEV 212
Query: 180 LSYLAEFYDLSSID 193
+ + + Y+ + +
Sbjct: 213 VRAIFKHYETAGFE 226
>gi|346311749|ref|ZP_08853750.1| hypothetical protein HMPREF9452_01619 [Collinsella tanakaei YIT
12063]
gi|345900049|gb|EGX69879.1| hypothetical protein HMPREF9452_01619 [Collinsella tanakaei YIT
12063]
Length = 273
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D Y + + ++ R C +G GPG+M+A +GA +AG G VG
Sbjct: 107 DDKMYAAARDAATQVVRA-GCAVITGGGPGIMEAANRGAAEAG----GVSVGLGIELPFE 161
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ L ++ R+F RK + + + + PGG GTLDEMFE+L L+
Sbjct: 162 EGLNPWVNLG--MSFRYFFVRKTMFVKYS--------SGAMVFPGGFGTLDEMFELLTLV 211
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
Q ++ E PV + +Y ++ L D++ G D G + + + + KI D EA++
Sbjct: 212 QTHKV-KETPVALVGEDY---WRGLFDWIEGTVRDAGMIGELD-HRMVKITDDVDEAVA 265
>gi|300774848|ref|ZP_07084711.1| methionyl-tRNA formyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300506663|gb|EFK37798.1| methionyl-tRNA formyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 250
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 19/194 (9%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ P++ +Y + ++ +I +L +G GPG+M+A KGA A G +G
Sbjct: 72 LKPENKYYEMAVDIAEKITKLGFGII-TGGGPGIMEAGNKGAFNAK----GKSIGLNIDL 126
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+F+PY+ + +F RK + + V +PGG GTLDE+ E +
Sbjct: 127 PFEQHFNPYINKSYSMNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELTEAM 178
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
LIQ +IG + P+ V+ F+ LLD F G +A+D++ L+++ DS EA
Sbjct: 179 TLIQTNKIG-KFPI---VLVGSEFWGGLLDWFKATLLKEGMIAEDDL-DLYRVVDSADEA 233
Query: 180 LSYLAEFYDLSSID 193
++++ FYD S++
Sbjct: 234 VAHIKAFYDKYSVN 247
>gi|188997002|ref|YP_001931253.1| hypothetical protein SYO3AOP1_1082 [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932069|gb|ACD66699.1| conserved hypothetical protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 225
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 28 SGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK 85
+G GPG+M+A +GA +A G +G K+ KE P L L +F ARK
Sbjct: 72 TGGGPGIMEAANRGAFEADGNSIGLNIKLPKEQ--------KPNKYLTEILNFNYFFARK 123
Query: 86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-DSF 144
L+ A TA V PGG GTLDE+ E L LIQ +++ PF V+ Y + +
Sbjct: 124 VMLVKYA--------TAFVLFPGGFGTLDEITETLTLIQTKKLK-----PFPVILYGNEY 170
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ + +L D E L+K D E + Y+ ++Y
Sbjct: 171 WNGFVQWLNDVVVKDGYIDKEDTELFKQMDDIDEIVDYIDQWY 213
>gi|395768659|ref|ZP_10449174.1| hypothetical protein Saci8_02706 [Streptomyces acidiscabies 84-104]
Length = 253
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
PD P Y LG L+D +G GPG M+A KGA +AG G VG
Sbjct: 86 PDSPEYEAGVRLG---HALVDAGWAVITGGGPGAMEAANKGACEAG----GISVGLGIEL 138
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 139 PFEQGLNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEAL 188
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +++ + P+ V+ ++ L+D++ + A ++ L+ + D EA+
Sbjct: 189 TLVQTQKV-TRFPI---VLFGTEYWGGLIDWIRNTLVAEGKASEKDLLLFHVTDDVDEAV 244
Query: 181 SYLAE 185
+ +++
Sbjct: 245 ALVSK 249
>gi|352081697|ref|ZP_08952539.1| Conserved hypothetical protein CHP00730 [Rhodanobacter sp. 2APBS1]
gi|351682603|gb|EHA65699.1| Conserved hypothetical protein CHP00730 [Rhodanobacter sp. 2APBS1]
Length = 284
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +AG G + + S P L + +F+
Sbjct: 132 DFVVVTGGGPGIMEAANRGAYEAGARSIGLNITLPHEQQPNSWITPELAFRFH----YFA 187
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A A+VA PGG GTLDE+FE+L L+Q ++ LP+ V+
Sbjct: 188 VRKMHFMMRA--------KALVAFPGGFGTLDELFEVLTLVQTGKM-PRLPI---VLVGS 235
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+F+ + D E +D A L + ++ +A++ + FYD
Sbjct: 236 TFWHRACDLAFLIEQGMLDPRD--AELLSVVENAEQAVAAMHAFYD 279
>gi|399044430|ref|ZP_10738078.1| putative Rossmann fold nucleotide-binding protein [Rhizobium sp.
CF122]
gi|398057209|gb|EJL49183.1| putative Rossmann fold nucleotide-binding protein [Rhizobium sp.
CF122]
Length = 288
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APNV--YVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ ++P L++ + F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-EKMP---LILFGEKFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L D+ A + +FY+
Sbjct: 247 IVNFEALAE-FGTIAPDDV-DLISFVDTADAAWKIIEDFYE 285
>gi|399067023|ref|ZP_10748703.1| putative Rossmann fold nucleotide-binding protein [Novosphingobium
sp. AP12]
gi|398027438|gb|EJL20989.1| putative Rossmann fold nucleotide-binding protein [Novosphingobium
sp. AP12]
Length = 291
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + P L + + +F+ RK H
Sbjct: 145 SGGGPSIMEAANRGAADVGAESLGLNIVLPHEQAPNRFVTPRLSFQFH----YFALRKMH 200
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ G P+P L+ + F++
Sbjct: 201 FLLRA---------RAVAVFPGGFGTFDEFFELLTLIQ---TGKMKPIPILLYGRE-FWE 247
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++DF E+ GT+ ++ L++ C++ E ++++FY L
Sbjct: 248 RVIDFEALAEE-GTINPADL-DLFRWCETAEEGWEHISKFYGL 288
>gi|336449928|ref|ZP_08620385.1| TIGR00730 family protein [Idiomarina sp. A28L]
gi|336283085|gb|EGN76292.1| TIGR00730 family protein [Idiomarina sp. A28L]
Length = 257
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 24/180 (13%)
Query: 6 PHYLQ----SFELGGEIAR--LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+Y Q SF++G I L +G GPG+M+A ++GA AG P G +
Sbjct: 79 PYYQQARALSFQIGKYIESNGLTQTRLITGGGPGIMEASSRGAHDAGHPSIGLNIALPHE 138
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +P++ + + ++F+ RK + A A++ PGG GTLDE+FE
Sbjct: 139 Q----RLNPFIAAKHSINFQYFALRKMHFLKRA--------KALIVFPGGFGTLDELFET 186
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ ++ +PV N F+ L++ E A+D +L+ + DS EA
Sbjct: 187 LTLIQTGKM-PRIPVFLYGKN---FWNGLINLELLAEHNLIDAED--LALYHLVDSVDEA 240
>gi|149372763|ref|ZP_01891784.1| hypothetical protein SCB49_12409 [unidentified eubacterium SCB49]
gi|149354460|gb|EDM43025.1| hypothetical protein SCB49_12409 [unidentified eubacterium SCB49]
Length = 229
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 26/191 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y +L IA+ + + +G GPG+M+A KGA AG G VG
Sbjct: 52 PDHKYY----QLAENIAKKITEHGYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNIT 103
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ + + +F RK + + V +PGG+GTLDE FE
Sbjct: 104 LPFEQHDNPYIDSDKSIDFDYFFVRKVMFVKYS--------QGFVVMPGGMGTLDEFFEA 155
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNS 177
LIQ +I ++ P+ ++ +F+ L+D++ E ++ ++ +L I D+
Sbjct: 156 FTLIQTHKI-AKFPI---ILVSTAFWSGLIDWIKTTVLEANNNISPGDL-NLIHIVDTED 210
Query: 178 EALSYLAEFYD 188
E L L FY+
Sbjct: 211 EVLDILNSFYN 221
>gi|406948285|gb|EKD79037.1| hypothetical protein ACD_41C00187G0001 [uncultured bacterium]
Length = 248
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 12 FELGGEIARLLDC---TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
++ G ++ R+L TT +G GPG+M+AV KGA AG P G + + E + +
Sbjct: 81 YKEGEKLGRMLASEGFTTITGGGPGVMEAVNKGAHDAGGPSLGLNI-QLPKEQRVNKY-- 137
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
+ + FF RK + + A V PGG GTLDE FE++ L+Q ++
Sbjct: 138 ---VNHGIGFHFFFTRKVMMTSPS--------QAFVVFPGGYGTLDEFFEVITLMQTNKM 186
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGD--CEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
VP ++M + ++ L FL E ++ +++A L+ I DS EA+ + +
Sbjct: 187 PR---VPLILMGKE-YWDSLDRFLRQEALEHHASIEPEDLA-LYHIVDSADEAMRIIRK 240
>gi|167627685|ref|YP_001678185.1| hypothetical protein Fphi_1459 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597686|gb|ABZ87684.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 237
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 22/198 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ D +Y + EL ++ +G GPG+M+A KGA Q G + +
Sbjct: 56 ISEDDKYYKDTVELAKSLSNH-GFAVITGGGPGIMEAGNKGAQQGSCSSVGLNITLPHEQ 114
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
P + +L R+F RK I ++ + + +PGG GTLDE+F+I
Sbjct: 115 ------KPNSYQDVFLIYRYFFTRKAMFIKHSM--------SYIVMPGGFGTLDELFDIT 160
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
LIQ G ++ +P ++ D F+ L++++ G V+K+EV +L + DS E
Sbjct: 161 TLIQ---TGKKVKMPIILYGKD-FWGGLMEWIKTTLVQKGVVSKEEV-NLLTLVDSIDEV 215
Query: 180 LSYLAEFYDLSSIDKRVH 197
L +AE Y +++ + H
Sbjct: 216 LEIVAEHY-MNTYSSKAH 232
>gi|402832449|ref|ZP_10881095.1| TIGR00730 family protein [Capnocytophaga sp. CM59]
gi|402277239|gb|EJU26323.1| TIGR00730 family protein [Capnocytophaga sp. CM59]
Length = 228
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD +Y + E+ I + +G GPG+M+A KGA Q G VG
Sbjct: 51 PDSKYYNLATEIAERIVGM-GFGVITGGGPGIMEAANKGATQGE----GASVGINIELPF 105
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + L +F ARK + + A V PGG GT+DE+FE + L
Sbjct: 106 EQHDNPYIDRDKNLHFNYFFARKVMFVRYS--------QAFVVFPGGFGTMDELFEAITL 157
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +I P P +++ F+ L+ ++ + + +G +A ++ +++I D+ E
Sbjct: 158 IQTTKIE---PFPIILVG-SEFWSGLVAWIKEVLLDKFGNIAAKDM-DIFRIVDTADEVE 212
Query: 181 SYLAEFY 187
+ +FY
Sbjct: 213 DIIEKFY 219
>gi|116071360|ref|ZP_01468629.1| hypothetical protein BL107_16980 [Synechococcus sp. BL107]
gi|116066765|gb|EAU72522.1| hypothetical protein BL107_16980 [Synechococcus sp. BL107]
Length = 297
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 19 ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP--YLPLETYL 76
AR +G GPG+M+A +GA +AG G + + HP Y+ E
Sbjct: 137 ARCSSHVIVTGGGPGIMEAANRGAFEAGCRSIGLNISLPFEQ------HPNSYITPELCF 190
Query: 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
+FS RK + +V V PGG GTLDE+FE+L L Q +G++ P+P
Sbjct: 191 QFNYFSIRKFHFVMRSV--------GAVLFPGGYGTLDELFELLTLRQ---VGTKSPMPI 239
Query: 137 LVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL----AEFYD 188
++ + F+++L+DF E G ++ +++ L+ DS EA ++ +EF++
Sbjct: 240 VLFGRE-FWERLIDFDFLAES-GLISLNDL-KLFHFADSAEEAWMHIQAGTSEFHN 292
>gi|237756259|ref|ZP_04584818.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691578|gb|EEP60627.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 225
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA +AG G + + P L L +F ARK
Sbjct: 72 TGGGPGIMEAANRGAFEAGGNSIGLNIKLPREQ------KPNKYLTETLNFNYFFARKVM 125
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-DSFYK 146
L+ A TA V PGG GTLDE+ E L LIQ +++ PF V+ Y + ++
Sbjct: 126 LVKYA--------TAFVLFPGGFGTLDELTETLTLIQTKKLK-----PFPVILYGNEYWN 172
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ +L D E L+K D+ E + Y+ ++Y
Sbjct: 173 GFVQWLNDVVVKDGYIDKEDTELFKQIDNIDEIVDYIDQWY 213
>gi|407784582|ref|ZP_11131731.1| decarboxylase [Celeribacter baekdonensis B30]
gi|407204284|gb|EKE74265.1| decarboxylase [Celeribacter baekdonensis B30]
Length = 286
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA K GG +G + Y+ E +F+ RK
Sbjct: 134 TGGGPGVMEAGNRGA----KDAGGVSIGLNVVLPHEQAPNEYVTPELCFNFHYFAIRKMH 189
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ +F++K
Sbjct: 190 FLMRA--------KAIAVFPGGFGTLDEMFESLTLIQTGRMSR---VPFLLFGR-AFWEK 237
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ E GT+A+ ++ L+K ++ EA++ +
Sbjct: 238 IINWEALAEA-GTIARSDL-DLFKFVETAEEAVAAI 271
>gi|193215575|ref|YP_001996774.1| hypothetical protein Ctha_1870 [Chloroherpeton thalassium ATCC
35110]
gi|193089052|gb|ACF14327.1| conserved hypothetical protein [Chloroherpeton thalassium ATCC
35110]
Length = 242
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 20/180 (11%)
Query: 12 FELGGEIARLLDCT---TWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+++ E+A+LL +G GPG+M A KGA +AG GF + + + +
Sbjct: 70 YKMAEEMAQLLVAQGLGVITGGGPGIMQAANKGAKKAGGASIGFNIFLPHEQ----DSNK 125
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ + +T +F RK + + A + LPGG GTLDE+ E + LIQ ++I
Sbjct: 126 YIDRDKLITFNYFFVRKVMFVKYS--------QAFIVLPGGYGTLDELGEAVTLIQTKKI 177
Query: 129 GSELPVPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+E PV + +Y D F K + + + E+ + ++ ++ + D+ SEA+ + FY
Sbjct: 178 -AEFPVILIGKSYWDGFLKWIRETM--LEEHHYIKSSDLDYVF-LVDTPSEAMEIIKRFY 233
>gi|84503472|ref|ZP_01001527.1| decarboxylase family protein [Oceanicola batsensis HTCC2597]
gi|84388150|gb|EAQ01103.1| decarboxylase family protein [Oceanicola batsensis HTCC2597]
Length = 287
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 34/169 (20%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV----GKEAGEWTAS----NFHPYLPLET 74
D +G GPG+M+A +GA AG G + + EW NFH
Sbjct: 123 DWVICTGGGPGVMEAGNRGADDAGGHSIGLSIVLPHEQAPNEWVTPDLCFNFH------- 175
Query: 75 YLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPV 134
+F+ RK + A A+ PGG GTLDEMFE L LIQ R+ V
Sbjct: 176 -----YFAIRKMHFLMRA--------RAICVFPGGFGTLDEMFESLTLIQTGRMER---V 219
Query: 135 PFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
PFL+ D F+++++D+ E GT+A ++ L++I ++ EA+ +
Sbjct: 220 PFLLFGRD-FWQRIIDWEALAEA-GTIAPQDL-ELFRIVETAEEAIEAI 265
>gi|209884345|ref|YP_002288202.1| 3-isopropylmalate dehydrogenase [Oligotropha carboxidovorans OM5]
gi|209872541|gb|ACI92337.1| 3-isopropylmalate dehydrogenase [Oligotropha carboxidovorans OM5]
Length = 276
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 13 ELGGEIA---RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
E GG A R D +G GPG+M+A +GA G P GF + + +PY
Sbjct: 105 ERGGAFAPRHRWRDNVIATGGGPGIMEAANRGASDIGAPSIGFNITLPHEQVP----NPY 160
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ E +F+ RK + A+R + A+ PGG GT+DE+FE+L L Q ++
Sbjct: 161 ITPELSFRFHYFAMRK---MHLAMRAN-----ALAIFPGGYGTMDELFELLTLQQTQKA- 211
Query: 130 SELPVPFLVMNYDSFYKKLLDFLGDCED 157
P +V+ +S+++K+++F E+
Sbjct: 212 ---PHAPIVLFGESYWRKIVNFEALAEE 236
>gi|421588136|ref|ZP_16033456.1| hypothetical protein RCCGEPOP_05626 [Rhizobium sp. Pop5]
gi|403707218|gb|EJZ22270.1| hypothetical protein RCCGEPOP_05626 [Rhizobium sp. Pop5]
Length = 288
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAADEGAPSIGLNIVLPHEQ--APNV--YVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ LP L++ ++F++
Sbjct: 199 FMVRA--------KAIAVFPGGFGTLDEFFECLTLIQTGRM-ERLP---LILFGEAFWRS 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F E +GT+A D+V L ++ A + +FY+
Sbjct: 247 IINFEALAE-FGTIAPDDV-KLISFVETAEAAWKIVQDFYE 285
>gi|295094431|emb|CBK83522.1| conserved hypothetical protein, DprA/Smf-related, family 2
[Coprococcus sp. ART55/1]
Length = 188
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D + ++ LG EIA+ + GLM AV +G + + G T
Sbjct: 14 DRSYIEETEYLGREIAKRGHTLVYGAGANGLMGAVARGVYEENGTIIGV---------TP 64
Query: 64 SNFHP----YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
S F+ + + +T RK + D D A + PGG+GTL+E FEI
Sbjct: 65 SFFNVDGILFENVSELITTETMRERKQ------IMEDKAD--AFIVTPGGIGTLEEFFEI 116
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG--TVAKDEVASLWKICDSNS 177
L L QL R G + ++ N + FY LL L + D G T A +E+ + + D++
Sbjct: 117 LTLKQLGRHGKAI----VIFNQNGFYDHLLSMLKETSDKGFMTPATNEI---YTVMDNSD 169
Query: 178 EALSYLAEF 186
E L YL +
Sbjct: 170 EILDYLESY 178
>gi|284033386|ref|YP_003383317.1| hypothetical protein Kfla_5508 [Kribbella flavida DSM 17836]
gi|283812679|gb|ADB34518.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length = 288
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 31/189 (16%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVG-GFKVGKEAG- 59
PD P Y + E+G ++ +G GPG+M+A KGA +AG VG G ++ E+G
Sbjct: 83 PDDPMYAAAEEVGRKLVGA-GYAVITGGGPGVMEAANKGASEAGGVSVGLGIELPFESGL 141
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
EW ++ + R+F RK + A V +PGG GTLDE+FE
Sbjct: 142 NEW----------VDIGMNFRYFFTRKTMFVKYA--------QGFVVMPGGFGTLDELFE 183
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSN 176
L L Q ++ S PV V+ S++ L+D+L + D A D ++ + D
Sbjct: 184 ALTLAQTRKVTS-FPV---VLFGTSYWSGLVDWLRETMLADGKISAAD--LEMFTLTDDA 237
Query: 177 SEALSYLAE 185
EA+SY+ +
Sbjct: 238 DEAVSYIVK 246
>gi|384099322|ref|ZP_10000408.1| hypothetical protein W5A_11571 [Imtechella halotolerans K1]
gi|383832670|gb|EID72140.1| hypothetical protein W5A_11571 [Imtechella halotolerans K1]
Length = 229
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y +L IA+ + + +G GPG+M+A KGA G G VG
Sbjct: 52 PDHEYY----KLAERIAKKIVEAGYGVITGGGPGIMEAGNKGAHLGG----GTSVGLNIE 103
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ + L +F RK + + V +PGG GTLDE+FE
Sbjct: 104 LPFEQHDNPYIDHDKNLNFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEA 155
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNS 177
+ LIQ +I P +++ D F+ L D++ E + V+ ++ L KI D+
Sbjct: 156 ITLIQTNKIAK---FPIILVGKD-FWGGLFDWIKATLLEKYHNVSPGDL-DLIKIVDTEE 210
Query: 178 EALSYLAEFY 187
E + L FY
Sbjct: 211 EVIDVLDSFY 220
>gi|417306399|ref|ZP_12093308.1| decarboxylase family protein [Rhodopirellula baltica WH47]
gi|421613900|ref|ZP_16054969.1| decarboxylase family protein [Rhodopirellula baltica SH28]
gi|440714591|ref|ZP_20895170.1| decarboxylase family protein [Rhodopirellula baltica SWK14]
gi|327537296|gb|EGF24031.1| decarboxylase family protein [Rhodopirellula baltica WH47]
gi|408495107|gb|EKJ99696.1| decarboxylase family protein [Rhodopirellula baltica SH28]
gi|436440787|gb|ELP34091.1| decarboxylase family protein [Rhodopirellula baltica SWK14]
Length = 357
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 33/197 (16%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
PD P Y + +LG R + W +GAG G+M+A KGA + + E
Sbjct: 92 APDRPDYQSAVDLG----RRMAAHGWMIITGAGGGIMEAGHKGAGRDASMGLNIMLPFEQ 147
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
G P L +T ++F RK L +C+ +V LPGG GTLDE
Sbjct: 148 GANEYIENDPKL-----VTLKYFFTRKLMFLKECS---------GIVCLPGGFGTLDEGL 193
Query: 118 EILALIQLERIGSELPVPFLVMNYD--SFYKKLLDFLGD---CEDWGTVAKDEVASLWKI 172
E+L L+Q G + +P + +++ S++K L F+ C G ++ ++VA L+KI
Sbjct: 194 EVLTLLQ---TGKQTMMPLIFLDHPGGSYWKDLGKFIDKQLMCN--GMISPEDVA-LYKI 247
Query: 173 CDSNSEALSYLAEFYDL 189
+S EA+ L FYD+
Sbjct: 248 TNSVDEAVEELLTFYDV 264
>gi|257068303|ref|YP_003154558.1| hypothetical protein Bfae_11220 [Brachybacterium faecium DSM 4810]
gi|256559121|gb|ACU84968.1| conserved hypothetical protein, DprA/Smf-related, family 2
[Brachybacterium faecium DSM 4810]
Length = 266
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVG-GFKVGKEA 58
+G D P+Y + E+ + + +G GPG+M+A +GA +AG VG G +V E
Sbjct: 76 LGEDSPYYGCAIEVAKGLVDM-GYAVITGGGPGIMEAGNRGAQEAGGVSVGLGIEVPHEQ 134
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G + Y+ L + R+F ARK + + + V +PGG+GT DE+FE
Sbjct: 135 G------MNEYVDLG--VDFRYFFARKTMFVKYS--------SGFVVMPGGLGTFDELFE 178
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q +I PV V+ +++ LLD+L G +A L ++ D+ E
Sbjct: 179 ALCLMQTHKI-DLFPV---VLVGREYWQGLLDWLRTAVVDGGMANPLDIDLMRVVDTAEE 234
Query: 179 ALSYLAEF 186
AL L E+
Sbjct: 235 ALEVLREY 242
>gi|237749336|ref|ZP_04579816.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380698|gb|EEO30789.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 245
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
PD+P+Y++ EL RL D SG GPG+M A +GA + G + E +
Sbjct: 62 PDNPYYIKCMELA---RRLSDAGFAVISGGGPGIMAAANRGAYEGKSLSVGLNI--ELPQ 116
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
A N + L R F ARK A A V PGG GTLDEM E+L
Sbjct: 117 EQAPNRWQNVSL----NYRHFFARKVAFAKYA--------DAFVLFPGGFGTLDEMSEVL 164
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ G +P +++ F++ + +L D + E L ++ D + +
Sbjct: 165 TLIQ---TGKSRRIPVILVG-SKFWEGFMKWLNDTMLAEEMIHKEDIELMQVIDDVDKVI 220
Query: 181 SYLAEFYDLSSI 192
+ FY+ +I
Sbjct: 221 GAIFTFYEKRAI 232
>gi|329894657|ref|ZP_08270462.1| hypothetical protein IMCC3088_848 [gamma proteobacterium IMCC3088]
gi|328922913|gb|EGG30242.1| hypothetical protein IMCC3088_848 [gamma proteobacterium IMCC3088]
Length = 227
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
Y+ ++ LG +A +G GPG+M+A +GA++AG G VG
Sbjct: 56 EYVSAYALGKTLAER-GIGVITGGGPGVMEAANRGALEAG----GLSVGLNITLPKEQQP 110
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PYL + L R+F RK LI A+ VA PGG GT DE+FE+L L+Q
Sbjct: 111 NPYLSMG--LEFRYFFTRKFLLIRYAL--------GFVAFPGGFGTTDELFELLTLMQTG 160
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGD 154
++ P +++ + F+ LL F+ D
Sbjct: 161 KLDKR---PIILVGTE-FFDPLLQFVRD 184
>gi|167948481|ref|ZP_02535555.1| hypothetical protein Epers_18881 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 242
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 24/142 (16%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHPHY L EIARL + +S G GPG+M+A KGA + P G + +
Sbjct: 59 DHPHY----GLAEEIARLCSDSGFSVVSGGGPGIMEAANKGAYEGKSPSIGLNIQLPKEQ 114
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY + L R F +RK + A +A V LPGG GTLDE+ EIL
Sbjct: 115 ----SGNPYQ--DISLQFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELAEIL 160
Query: 121 ALIQLERIGSELPVPFLVMNYD 142
L+Q G +P +++ +
Sbjct: 161 TLVQ---TGKTREIPIILVGWS 179
>gi|319763537|ref|YP_004127474.1| hypothetical protein Alide_2856 [Alicycliphilus denitrificans BC]
gi|317118098|gb|ADV00587.1| Conserved hypothetical protein CHP00730 [Alicycliphilus
denitrificans BC]
Length = 288
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA AG G + A N PY+ E +F+
Sbjct: 132 DFVVITGGGPGIMEAANRGAFDAGARSIGLNI--TLPHEQAPN--PYMCPELAFRFHYFA 187
Query: 83 ARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141
RK H L+ +VA PGG GTLDE+FE+L LIQ G +P +++
Sbjct: 188 LRKMHFLLHA---------KGLVAFPGGYGTLDELFEVLTLIQ---TGKMQRIPVVLVGR 235
Query: 142 DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
D F+ + +DF D G V+ ++ L+ D E + L FY
Sbjct: 236 D-FWSRAVDF-DLLLDEGYVSPSDL-DLFTCVDKAEEIMGALERFY 278
>gi|297537594|ref|YP_003673363.1| hypothetical protein M301_0400 [Methylotenera versatilis 301]
gi|297256941|gb|ADI28786.1| conserved hypothetical protein [Methylotenera versatilis 301]
Length = 242
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 30/202 (14%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP+Y +L +IARLL + SG GPG+M+A KGA P G + + E
Sbjct: 60 DHPYY----KLTEDIARLLSDAGFSVISGGGPGIMEAANKGAFAGKSPSIGLNI-ELPHE 114
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
T +++ + + F RK + A +A V +PGG GTLDE+ E +
Sbjct: 115 QTGNSYQ-----DISQNFKHFFMRKVMFVKYA--------SAYVVMPGGFGTLDEVMEAI 161
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q G L +P +++ ++F++ L+D++ + E L ++ D + +
Sbjct: 162 TLVQ---TGKSLKMPIILVG-EAFWRGLVDWIKTTLVDEKMISAEDLDLIQVIDEPKDVV 217
Query: 181 SYLAEFYD-----LSSIDKRVH 197
+ + Y+ LS+ ++RV
Sbjct: 218 EAIFKHYETRGFKLSADEERVQ 239
>gi|32476292|ref|NP_869286.1| hypothetical protein RB10175 [Rhodopirellula baltica SH 1]
gi|32446837|emb|CAD78743.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 375
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 33/197 (16%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
PD P Y + +LG R + W +GAG G+M+A KGA + + E
Sbjct: 110 APDRPDYQSAVDLG----RRMAAHGWMIITGAGGGIMEAGHKGAGRDASMGLNIMLPFEQ 165
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
G P L +T ++F RK L +C+ +V LPGG GTLDE
Sbjct: 166 GANEYIENDPKL-----VTLKYFFTRKLMFLKECS---------GIVCLPGGFGTLDEGL 211
Query: 118 EILALIQLERIGSELPVPFLVMNYD--SFYKKLLDFLGD---CEDWGTVAKDEVASLWKI 172
E+L L+Q G + +P + +++ S++K L F+ C G ++ ++VA L+KI
Sbjct: 212 EVLTLLQ---TGKQTMMPLIFLDHPGGSYWKDLGKFIDKQLMCN--GMISPEDVA-LYKI 265
Query: 173 CDSNSEALSYLAEFYDL 189
+S EA+ L FYD+
Sbjct: 266 TNSVDEAVEELLTFYDV 282
>gi|343473640|emb|CCD14524.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 324
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 33/185 (17%)
Query: 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGA------MQAGKPVG-GFKVGKEAGEWTA 63
SFE E L TT G GPG M+A KGA M G + F+VG
Sbjct: 162 SFEESTESFHDLIVTT--GGGPGFMEAANKGAASVPDVMTMGMGISLPFEVG-------- 211
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ Y+ +F RK ++ SC AVV PGG GT+DE+FE+L L
Sbjct: 212 --LNQYVTPGLAFQFHYFFTRKFWMMY------SCR--AVVIAPGGFGTMDEVFELLTLR 261
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++I V F V F+K ++++ D+GT++K+EV SL DS EAL+++
Sbjct: 262 QTQKIHKFPIVLFCV----KFWKTVVNWEALV-DYGTISKEEVDSLC-FTDSVDEALAFI 315
Query: 184 AEFYD 188
F++
Sbjct: 316 RNFFE 320
>gi|337755117|ref|YP_004647628.1| hypothetical protein F7308_1101 [Francisella sp. TX077308]
gi|336446722|gb|AEI36028.1| hypothetical protein F7308_1101 [Francisella sp. TX077308]
Length = 237
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 82 TGGGPGIMEAGNKGAQQGSCSSVGLNITLPHEQ------KPNSYQDVFLIYRYFFTRKAM 135
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ D F+
Sbjct: 136 FIKHSM--------SYIVMPGGFGTLDELFDITTLIQ---TGKKVKMPIILYGKD-FWGG 183
Query: 148 LLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
L++++ G V+K+EV +L + DS E L +AE Y
Sbjct: 184 LMEWIKTTLVQKGVVSKEEV-NLLTLVDSIDEVLEVVAEHY 223
>gi|33596489|ref|NP_884132.1| hypothetical protein BPP1868 [Bordetella parapertussis 12822]
gi|33566258|emb|CAE37169.1| putative exported protein [Bordetella parapertussis]
Length = 190
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA +AG G VG ++ + Y + L+ +F +RK
Sbjct: 33 AGGGPGIMEAANKGAFEAG----GTSVGLNISLPHEAHNNEYQTIS--LSFEYFYSRKAT 86
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A VA+PGG GTLDE+FE L LIQ ++ P P +++ + F+
Sbjct: 87 FF--------MHSMAYVAMPGGFGTLDELFEALTLIQTGKVP---PAPIVLVGSE-FWHG 134
Query: 148 LLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKS 203
L+D+LG+ G +A ++ +L+ I D ++ + + EF+D H +L +
Sbjct: 135 LVDWLGEQLLANGMIAAHDL-NLFIIEDDPAKVVRKVVEFHDKQGRTDSQHAPSLPA 190
>gi|340359556|ref|ZP_08682038.1| methionyl-tRNA formyltransferase [Actinomyces sp. oral taxon 448
str. F0400]
gi|339884399|gb|EGQ74187.1| methionyl-tRNA formyltransferase [Actinomyces sp. oral taxon 448
str. F0400]
Length = 259
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P Y + ++G +AR +G GPG+M+A KGA ++G G VG
Sbjct: 79 PDDPFYTMAEQVGAGLARR-GYGVITGGGPGMMEAANKGAHRSG----GVSVGLGIELPR 133
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE + L
Sbjct: 134 EQEMNEYVDLG--INFRYFFARKTMFLKYS--------DGFVVMPGGMGTLDELFEAVTL 183
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
+Q ++ S P+ + +Y + L ++ G G ++ +V L + DS EA+
Sbjct: 184 VQTGKV-SSFPIALVGSDY---WGGLTHWIRGTLARAGAISPQDV-DLLHVVDSAEEAVD 238
Query: 182 YLAE 185
Y+ +
Sbjct: 239 YVVD 242
>gi|402772573|ref|YP_006592110.1| decarboxylase [Methylocystis sp. SC2]
gi|401774593|emb|CCJ07459.1| Decarboxylase family protein [Methylocystis sp. SC2]
Length = 312
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 7 HYLQSFELGGEIARLLDCTTW------SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + E GG + + W +G GPG+M+A +GA +AG G + +
Sbjct: 135 YYQIAREFGGLVGAARESGDWPRLAIVTGGGPGIMEAANRGAFEAGAETVGLNITLPHEQ 194
Query: 61 WTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
S P L L R+F+ RK H ++ A+VA PGG GT DE+FE
Sbjct: 195 LPNSYVTPSL----CLRFRYFALRKLHFMLRA---------RALVAFPGGFGTFDELFET 241
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKL-LDFLGD 154
L L+Q G P+P +++ + + + +DFL D
Sbjct: 242 LTLVQ---TGKVKPIPIILVGENYWRRAFDVDFLVD 274
>gi|319955266|ref|YP_004166533.1| hypothetical protein [Cellulophaga algicola DSM 14237]
gi|319423926|gb|ADV51035.1| Conserved hypothetical protein CHP00730 [Cellulophaga algicola DSM
14237]
Length = 228
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 21/180 (11%)
Query: 12 FELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
++L E+A+ + + +G GPG+M+A +GA AG G VG + +P
Sbjct: 57 YQLAIEVAKSIAEAGYGVITGGGPGIMEAGNRGANLAG----GISVGLNIDLPFEQHDNP 112
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ + L +F RK + + V +PGG GTLDE+FE + LIQ +I
Sbjct: 113 YIDSDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITLIQTNKI 164
Query: 129 GSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ P+ ++ F+ L+D++ G GT++ ++ L KI D+ E + + FY
Sbjct: 165 -EKFPI---ILVGTEFWTGLMDWIKGTMLTMGTISAKDL-DLIKIVDTKEEVVDIIDSFY 219
>gi|309790794|ref|ZP_07685339.1| hypothetical protein OSCT_1290 [Oscillochloris trichoides DG-6]
gi|308227165|gb|EFO80848.1| hypothetical protein OSCT_1290 [Oscillochloris trichoides DG6]
Length = 246
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y + E +A +G GPG+M+A +GA +A GF +G
Sbjct: 63 DEPAYYAAVETAKRLAEA-GFAIITGGGPGIMEAANRGAREAN----GFSIGCTIELPFE 117
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ + Y+ LE + R+F RK + A +A V PGG GTLDE+FE L LI
Sbjct: 118 AGANAYVDLE--IRFRYFFVRKTMFVKYA--------SAFVIFPGGFGTLDELFEALTLI 167
Query: 124 QLERIGSELPVPFLVMNYDSFY 145
Q RI + F V+ YDS Y
Sbjct: 168 QTSRIHN-----FPVILYDSAY 184
>gi|169628433|ref|YP_001702082.1| hypothetical protein MAB_1340 [Mycobacterium abscessus ATCC 19977]
gi|418419581|ref|ZP_12992764.1| hypothetical protein MBOL_13090 [Mycobacterium abscessus subsp.
bolletii BD]
gi|419711532|ref|ZP_14238995.1| hypothetical protein OUW_18406 [Mycobacterium abscessus M93]
gi|419714804|ref|ZP_14242215.1| hypothetical protein S7W_10129 [Mycobacterium abscessus M94]
gi|420863304|ref|ZP_15326697.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 4S-0303]
gi|420867701|ref|ZP_15331086.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0726-RA]
gi|420872133|ref|ZP_15335513.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0726-RB]
gi|420908908|ref|ZP_15372222.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0125-R]
gi|420915294|ref|ZP_15378599.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0125-S]
gi|420919683|ref|ZP_15382981.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0728-S]
gi|420926177|ref|ZP_15389463.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 6G-1108]
gi|420965647|ref|ZP_15428861.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0810-R]
gi|420976526|ref|ZP_15439708.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 6G-0212]
gi|420981905|ref|ZP_15445075.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0728-R]
gi|420986731|ref|ZP_15449892.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 4S-0206]
gi|421006429|ref|ZP_15469544.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0119-R]
gi|421011771|ref|ZP_15474865.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0122-R]
gi|421016690|ref|ZP_15479758.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0122-S]
gi|421022506|ref|ZP_15485554.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 3A-0731]
gi|421027991|ref|ZP_15491028.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0930-R]
gi|421033046|ref|ZP_15496068.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0930-S]
gi|421038041|ref|ZP_15501052.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0116-R]
gi|421042488|ref|ZP_15505493.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0116-S]
gi|169240400|emb|CAM61428.1| Conserved hypothetical protein [Mycobacterium abscessus]
gi|364001211|gb|EHM22407.1| hypothetical protein MBOL_13090 [Mycobacterium abscessus subsp.
bolletii BD]
gi|382938854|gb|EIC63183.1| hypothetical protein OUW_18406 [Mycobacterium abscessus M93]
gi|382945193|gb|EIC69493.1| hypothetical protein S7W_10129 [Mycobacterium abscessus M94]
gi|392073104|gb|EIT98944.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0726-RA]
gi|392073824|gb|EIT99662.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 4S-0303]
gi|392076322|gb|EIU02155.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0726-RB]
gi|392122522|gb|EIU48285.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0125-R]
gi|392122978|gb|EIU48740.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0125-S]
gi|392133688|gb|EIU59430.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0728-S]
gi|392140084|gb|EIU65815.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 6G-1108]
gi|392170785|gb|EIU96462.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 6G-0212]
gi|392173923|gb|EIU99589.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
6G-0728-R]
gi|392188148|gb|EIV13787.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 4S-0206]
gi|392202181|gb|EIV27778.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0119-R]
gi|392210346|gb|EIV35915.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0122-R]
gi|392215203|gb|EIV40751.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 3A-0731]
gi|392216160|gb|EIV41705.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0122-S]
gi|392226255|gb|EIV51769.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0116-R]
gi|392229587|gb|EIV55097.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0930-S]
gi|392231897|gb|EIV57401.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0930-R]
gi|392241554|gb|EIV67042.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
4S-0116-S]
gi|392257635|gb|EIV83084.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus
3A-0810-R]
Length = 250
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 21/182 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P Y +LG + +G GPG M+A +GA ++G G+ VG
Sbjct: 77 PDSPEYRLGRDLGTALVNA-GYAVITGGGPGAMEAANRGASESG----GYSVGLGIELPF 131
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ ++ L + R+F RK + A A V LPGG GTLDE+FE L L
Sbjct: 132 EQGLNEWVDLG--INFRYFFVRKTMFVKYA--------QAFVCLPGGFGTLDELFEALTL 181
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
+Q ++ + P+ L Y + LLD++ G G V + ++A L I DS EA+
Sbjct: 182 VQTRKV-TRFPIILLGTEY---WSGLLDWIRGTMLPAGKVGEQDIA-LLSITDSVDEAVD 236
Query: 182 YL 183
+
Sbjct: 237 II 238
>gi|300690851|ref|YP_003751846.1| hypothetical protein RPSI07_1191 [Ralstonia solanacearum PSI07]
gi|299077911|emb|CBJ50550.1| conserved hypothetical protein; putative exported protein
[Ralstonia solanacearum PSI07]
gi|344167307|emb|CCA79517.1| conserved hypothetical protein [blood disease bacterium R229]
Length = 320
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 138 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 189
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 190 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 239
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
LIQ G VP +VM F+K LLD F G +A+ ++ + +I D +A
Sbjct: 240 TLIQ---TGKSRNVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKDA 294
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 295 LDAVYEFYE 303
>gi|71409685|ref|XP_807174.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70871118|gb|EAN85323.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 330
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 23/170 (13%)
Query: 21 LLDCTTWSGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLT 77
LD +G GPG M+A +GA ++ + +G G + E G + Y+
Sbjct: 174 FLDLVITTGGGPGFMEAANRGAASVEGVETMGMGISLPFEKG------LNRYISHGLAFE 227
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F RK ++ SC A+ PGG GTLDEMFE+L L Q ++I +LP+
Sbjct: 228 FHYFFTRKFWMMY------SC--RAIFIAPGGFGTLDEMFELLTLRQTKKI-PDLPI--- 275
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
V+ SF++ ++++ E +GTV+K+E+ SL D+ EAL ++ F+
Sbjct: 276 VLLGSSFWRTVINWEALVE-FGTVSKEEIDSLC-FADTVQEALEFIMGFF 323
>gi|407777075|ref|ZP_11124346.1| hypothetical protein NA2_03867 [Nitratireductor pacificus pht-3B]
gi|407301240|gb|EKF20361.1| hypothetical protein NA2_03867 [Nitratireductor pacificus pht-3B]
Length = 205
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKE 57
G D H+ LG +A + G+M AV +GAM AG V G F + KE
Sbjct: 19 GRDENHFAAGLTLGRSLAGAGLRLVYGAGTKGIMGAVARGAMDAGGAVTGIIPKFLIRKE 78
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A E + L+ + RKH + D R+D A VALPGG+GTL+E+
Sbjct: 79 ATEVELTR------LDELVVTDDMHQRKHLMFD---RSD-----AFVALPGGIGTLEEIV 124
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
EI+ QL R E P+ F N F+ LL + D G V
Sbjct: 125 EIMTWAQLAR--HEKPIVF--ANISGFWNPLLTLIQHMRDEGFV 164
>gi|337741970|ref|YP_004633698.1| hypothetical protein OCA5_c27640 [Oligotropha carboxidovorans OM5]
gi|386030986|ref|YP_005951761.1| hypothetical protein OCA4_c27630 [Oligotropha carboxidovorans OM4]
gi|336096054|gb|AEI03880.1| hypothetical protein OCA4_c27630 [Oligotropha carboxidovorans OM4]
gi|336099634|gb|AEI07457.1| hypothetical protein OCA5_c27640 [Oligotropha carboxidovorans OM5]
Length = 295
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 13 ELGGEIA---RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
E GG A R D +G GPG+M+A +GA G P GF + + +PY
Sbjct: 124 ERGGAFAPRHRWRDNVIATGGGPGIMEAANRGASDIGAPSIGFNITLPHEQVP----NPY 179
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ E +F+ RK + A+R + A+ PGG GT+DE+FE+L L Q ++
Sbjct: 180 ITPELSFRFHYFAMRK---MHLAMRAN-----ALAIFPGGYGTMDELFELLTLQQTQKA- 230
Query: 130 SELPVPFLVMNYDSFYKKLLDFLGDCED 157
P +V+ +S+++K+++F E+
Sbjct: 231 ---PHAPIVLFGESYWRKIVNFEALAEE 255
>gi|86143127|ref|ZP_01061549.1| hypothetical protein MED217_10792 [Leeuwenhoekiella blandensis
MED217]
gi|85830572|gb|EAQ49031.1| hypothetical protein MED217_10792 [Leeuwenhoekiella blandensis
MED217]
Length = 205
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD +Y S + +I +G GPG+M+A KGA AG G VG
Sbjct: 28 PDEEYYKLSVAIAEKIVEN-GYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNIDLPF 82
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + + +F RK + + V LPGG GTLDE+FE + L
Sbjct: 83 EQHDNPYIDSDKSIDFDYFFVRKVMFVKYS--------QGFVVLPGGFGTLDELFESITL 134
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +I + P+ + Y ++ L D++ + E + T++ ++ L + D+ E L
Sbjct: 135 IQTHKI-DKFPIILVGTEY---WQGLFDWIKNTLLEKFNTISPGDI-DLLHLVDTEDEVL 189
Query: 181 SYLAEFYD 188
L FY+
Sbjct: 190 EVLNNFYN 197
>gi|413965134|ref|ZP_11404360.1| hypothetical protein BURK_034664 [Burkholderia sp. SJ98]
gi|413927808|gb|EKS67097.1| hypothetical protein BURK_034664 [Burkholderia sp. SJ98]
Length = 249
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG----K 56
+ P+ P+Y + E+ + + SG GPG+M+A KGA P G + +
Sbjct: 59 LKPESPYYQLTIEIAQKFSDA-GFAVISGGGPGIMEAANKGAHAGKSPSVGLNIELPHEQ 117
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
+W + L R F RK + + AVV +PGG GTLDE+
Sbjct: 118 SGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVVVMPGGFGTLDEL 159
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
E+L LIQ ++ VP +++ + F+ LLD+ + V ++ L ++ D
Sbjct: 160 AEVLTLIQTKK---SRHVPIVLVGAE-FWAGLLDWFKNTLLTNGVISEKDLDLMQVIDDP 215
Query: 177 SEALSYLAEFYD 188
+ L + FY+
Sbjct: 216 DQVLEAVLRFYE 227
>gi|119715437|ref|YP_922402.1| hypothetical protein Noca_1201 [Nocardioides sp. JS614]
gi|119536098|gb|ABL80715.1| conserved hypothetical protein 730 [Nocardioides sp. JS614]
Length = 243
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 23/182 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y E+G ++ + +G GPG+M+A KGA +AG G VG
Sbjct: 75 DHPAYAVGEEVGRKLVQA-GFAVITGGGPGVMEAANKGASEAG----GISVGLGIEVPWE 129
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ + ++ + + R+F RK + + +ALPGG+GTLDE+FE + L+
Sbjct: 130 AELNGWV--DVGINFRYFFVRKTMFVKYS--------QGYIALPGGLGTLDELFEAMTLV 179
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALS 181
Q ++I S P+ L + + + LLD++GD D G + + ++ SL + D EA++
Sbjct: 180 QTQKITS-FPIVLLGV---AEWAGLLDWMGDSMLAD-GRIKQADLDSL-LVTDDIDEAIA 233
Query: 182 YL 183
++
Sbjct: 234 WI 235
>gi|421746989|ref|ZP_16184742.1| hypothetical protein B551_09831 [Cupriavidus necator HPC(L)]
gi|409774427|gb|EKN56050.1| hypothetical protein B551_09831 [Cupriavidus necator HPC(L)]
Length = 239
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y Q+ + IARL SG GPG+M+A KGA AGK VG
Sbjct: 57 DSPYYQQTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSA---SVGLNIEL 108
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 109 PHEQQGNPYQ--DIAMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 158
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ L +I D E
Sbjct: 159 TLVQ---TGKSRAVP-VVMVGSRFWKGLLDWFRFTLLPMGLIAEHDL-DLMQIVDEPHEV 213
Query: 180 LSYLAEFYD 188
L + ++Y+
Sbjct: 214 LEAVYDYYE 222
>gi|144900110|emb|CAM76974.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 297
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 7 HYLQSFELGGEIAR------LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y +S L G + + D +G GPG+M+A +GA + VGG +G
Sbjct: 125 YYEESRRLAGIVTNTCIGEHICDFVVKTGGGPGIMEAANRGAHE----VGGKSIGLNIVL 180
Query: 61 WTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+PY+ + +F+ RK H +I A+V PGG GTLDE+FE
Sbjct: 181 PMEQAPNPYVTPDLCFRFHYFAIRKMHFMIRV---------KALVVFPGGFGTLDELFEA 231
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ +I P+P +VM +++++++F + D+ L ++ EA
Sbjct: 232 LTLIQTGKIE---PIP-VVMFGREYWERVINFDAMAMEGMIGPHDK--DLLTFVETAEEA 285
Query: 180 LSYLAEFYDL 189
+A+FY L
Sbjct: 286 WHIIADFYRL 295
>gi|223041111|ref|ZP_03611366.1| conserved hypothetical protein [Campylobacter rectus RM3267]
gi|222877605|gb|EEF12731.1| conserved hypothetical protein [Campylobacter rectus RM3267]
Length = 209
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 72/156 (46%), Gaps = 36/156 (23%)
Query: 28 SGAGPGLMDAVTKGAMQAGK-PVGGFKVGKEAGEWTASNFHPYLPLET----YLTCRF-- 80
SG GPG+M+A KGA ++GK P G + LP E Y T F
Sbjct: 67 SGGGPGVMEAANKGAYESGKSPSIGLNI--------------VLPFEQVTNRYATSNFVF 112
Query: 81 --FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 138
SARK LI+ + A + PGG GTLDE+FEIL L Q IG++ FL+
Sbjct: 113 SNLSARKFALIERS--------RAFLVFPGGFGTLDELFEILVLAQ---IGAKKAKIFLI 161
Query: 139 MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
+ F+ KL DF+ +E SL+ I D
Sbjct: 162 GS--EFWGKLDDFIKTTLIHEKAVSEEDLSLYTISD 195
>gi|146302429|ref|YP_001197020.1| hypothetical protein Fjoh_4702 [Flavobacterium johnsoniae UW101]
gi|146156847|gb|ABQ07701.1| conserved hypothetical protein 730 [Flavobacterium johnsoniae
UW101]
Length = 193
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
G + + Q+ LG ++ + GA GLM AV GA+ AG V G +
Sbjct: 13 GTEKIYEEQAIALGKTLSEQNIELVYGGANVGLMGAVADGALNAGGKVIGV-----LPNF 67
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
S +L L + RK + ND CD V+ALPGG GTL+E+FE+L
Sbjct: 68 LRSKEIAHLGLTELILVESMHERKTKM------NDLCD--GVIALPGGFGTLEELFEMLT 119
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
QL P ++N D FY L++ L + G + KD AS+ + D+ + L+
Sbjct: 120 WAQL----GLHKKPIAILNIDGFYDALIELLKVMVEKGLL-KDVNASMVLVSDNIEDLLN 174
Query: 182 YLAEF 186
+ +
Sbjct: 175 KMRNY 179
>gi|84515765|ref|ZP_01003126.1| decarboxylase family protein [Loktanella vestfoldensis SKA53]
gi|84510207|gb|EAQ06663.1| decarboxylase family protein [Loktanella vestfoldensis SKA53]
Length = 304
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 20/157 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA AG G + + A N Y+ E +F+ RK H
Sbjct: 151 TGGGPGVMEAGNRGAQDAGGRSIGLNIVLPHEQ--APNI--YVTPELCFNFHYFAIRKMH 206
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A A+ PGG GTLDE FE L LIQ R+G VPFL+ +F++
Sbjct: 207 FLMRAA---------AICVFPGGFGTLDETFEALTLIQTGRMGR---VPFLLFGR-AFWE 253
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
K++++ E GT++ D++ L++ ++ EAL +
Sbjct: 254 KIINWDALAEA-GTISADDL-DLFRFVETAQEALEAM 288
>gi|56478730|ref|YP_160319.1| hypothetical protein ebA5802 [Aromatoleum aromaticum EbN1]
gi|56314773|emb|CAI09418.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 299
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G + E A N P++ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAHDAGGRSMGMSIFLPFEE--APN--PWITPELCFQFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ AV AVV+ PGG GTLDE+FE+L L Q +I P +++ D F+++
Sbjct: 199 FLMRAV--------AVVSFPGGFGTLDELFEVLTLTQTRKIRRR---PIILIGRD-FWER 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
L+DF E G ++ ++V L++ ++ EA + Y+
Sbjct: 247 LIDFDVMIEH-GVISPEDV-ELFRYVETADEAWDAIKAAYN 285
>gi|389579688|ref|ZP_10169715.1| TIGR00730 family protein [Desulfobacter postgatei 2ac9]
gi|389401323|gb|EIM63545.1| TIGR00730 family protein [Desulfobacter postgatei 2ac9]
Length = 221
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA++ G K+ E SN + + L +F RK
Sbjct: 77 TGGGPGIMEAANMGALEQNGESVGLKITLPFEE--KSNAY----MTRSLDFNYFFIRKVM 130
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A + +PGG+GT+DEMFE L L+Q RI +P ++MN + F+
Sbjct: 131 FVKYA--------QAYIIMPGGLGTMDEMFETLTLVQTRRIRK---MPVILMNKE-FWAG 178
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
L+D++ + + L+ + D+ +AL + FY+ S
Sbjct: 179 LVDWIKKSLAATGLISAKDMELFSLVDTPEQALKIVNNFYNRS 221
>gi|380302027|ref|ZP_09851720.1| hypothetical protein BsquM_08111 [Brachybacterium squillarum M-6-3]
Length = 244
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
DHP Y + E+ + + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 78 DHPDYACAEEIARGVVDM-GYAVITGGGPGIMEAGNRGAQEAGGTSVGLGIELPHEQG-- 134
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ L + R+F ARK + + + V +PGG GT DE+FE +
Sbjct: 135 ----MNRYVDLG--VDFRYFFARKTMFVKYS--------SGFVVMPGGFGTFDELFEAVC 180
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I PV + +Y ++ LLD++ D G + + +V L ++ DS EAL
Sbjct: 181 LMQTHKI-RMFPVVLVGRDY---WQGLLDWISTAVLDRGMIGEGDVEQL-RVVDSAEEAL 235
Query: 181 SYLAE 185
+ L E
Sbjct: 236 AVLRE 240
>gi|33592381|ref|NP_880025.1| hypothetical protein BP1253 [Bordetella pertussis Tohama I]
gi|384203683|ref|YP_005589422.1| hypothetical protein BPTD_1243 [Bordetella pertussis CS]
gi|408415187|ref|YP_006625894.1| hypothetical protein BN118_1218 [Bordetella pertussis 18323]
gi|33572026|emb|CAE41549.1| putative exported protein [Bordetella pertussis Tohama I]
gi|332381797|gb|AEE66644.1| hypothetical protein BPTD_1243 [Bordetella pertussis CS]
gi|401777357|emb|CCJ62643.1| putative exported protein [Bordetella pertussis 18323]
Length = 209
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA +AG G VG ++ + Y + L+ +F +RK
Sbjct: 52 AGGGPGIMEAANKGAFEAG----GTSVGLNISLPHEAHNNEYQTIS--LSFEYFYSRKAT 105
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A VA+PGG GTLDE+FE L LIQ ++ P P +++ + F+
Sbjct: 106 FF--------MHSMAYVAMPGGFGTLDELFEALTLIQTGKVP---PAPIVLVGSE-FWHG 153
Query: 148 LLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
L+D+LG+ G +A ++ +L+ I D ++ + + EF+D
Sbjct: 154 LVDWLGEQLLANGMIAAHDL-NLFIIEDDPAKVVRKVVEFHD 194
>gi|397677287|ref|YP_006518825.1| hypothetical protein ZZ6_1438 [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395397976|gb|AFN57303.1| Conserved hypothetical protein CHP00730 [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 292
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GP +M+A +GA G P GF G TA N PY+ + +F+ RK
Sbjct: 138 SGGGPSIMEAANRGAHDVGAPSIGF--GIVLPFETAPN--PYITPDLSFQFHYFALRKTH 193
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
L+ A A PGG GTLDE+FE+L LI R+ + VP L + F+ K
Sbjct: 194 LMLRA--------RAFAIFPGGFGTLDEVFELLTLIHTHRLEA---VPILFYGRE-FWNK 241
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+++F E+ A+D ++ D+ E + + +F+
Sbjct: 242 IINFDALVEEGMISAED--LRFFQFVDTAEEGWAVICDFW 279
>gi|386842322|ref|YP_006247380.1| hypothetical protein SHJG_6240 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102623|gb|AEY91507.1| hypothetical protein SHJG_6240 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451795615|gb|AGF65664.1| hypothetical protein SHJGH_6001 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 252
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Query: 12 FELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+E G + R L W +G GPG M+A KGA +AG G VG +P
Sbjct: 90 YEAGVRLGRGLVQAGWAVITGGGPGAMEAANKGACEAG----GVSVGLGIELPFEQGLNP 145
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ + L R+F RK + A V LPGG+GTLDE+FE L L+Q +++
Sbjct: 146 YV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALTLVQTQKV 195
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++ P+ V+ ++ L+++L + A ++ L+ + D EA+S +++
Sbjct: 196 -TQFPI---VLFGSEYWGGLVEWLKNTLVAQGKASEKDLLLFHVTDDVDEAVSLVSK 248
>gi|430742821|ref|YP_007201950.1| hypothetical protein Sinac_1893 [Singulisphaera acidiphila DSM
18658]
gi|430014541|gb|AGA26255.1| TIGR00730 family protein [Singulisphaera acidiphila DSM 18658]
Length = 309
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 23/190 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
G ++P Y ++ LG A+L++ +G GPGLM+A +GA +AG G VG
Sbjct: 106 FGENNPFYAEARGLG---AKLVEAGFAVITGGGPGLMEAANRGAFEAG----GISVGCNI 158
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+ + Y L + R+F RK + A V PGG GTLDE+FE
Sbjct: 159 ELPFEQSENRYTTLS--IDFRYFFVRKTMFVKYA--------NGFVIFPGGFGTLDELFE 208
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q +I S P+ V+ +++ LLD++ + E +L + DS E
Sbjct: 209 ALTLVQTRKI-SRFPI---VLFGSAYWNGLLDWIKGTQLAHGAISPEDMNLLIVTDSIDE 264
Query: 179 ALSYLAEFYD 188
A + + Y+
Sbjct: 265 ARDVIVDCYN 274
>gi|187929515|ref|YP_001900002.1| hypothetical protein Rpic_2436 [Ralstonia pickettii 12J]
gi|404396630|ref|ZP_10988424.1| TIGR00730 family protein [Ralstonia sp. 5_2_56FAA]
gi|187726405|gb|ACD27570.1| conserved hypothetical protein [Ralstonia pickettii 12J]
gi|348610573|gb|EGY60261.1| TIGR00730 family protein [Ralstonia sp. 5_2_56FAA]
Length = 317
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 43/197 (21%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL + SG GPG+M+A KGA AG+
Sbjct: 135 DSPYYERTIE----IARLFSDAGFAVISGGGPGIMEAANKGA--------------HAGK 176
Query: 61 WTASNFHPYLPLETY--------LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
+ + LP E + R F RK + + A + +PGG GT
Sbjct: 177 SASVGLNIELPHEQQGNRYQDISMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGT 228
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWK 171
LDE+ E+L L+Q G VP +VM F+K LLD F G +A+ ++ + +
Sbjct: 229 LDELAEVLTLVQ---TGKSRSVP-VVMFGSHFWKGLLDWFRFTLLPMGLIAEHDL-DIMR 283
Query: 172 ICDSNSEALSYLAEFYD 188
I D +AL + EFY+
Sbjct: 284 IVDEPKDALDAVYEFYE 300
>gi|374309424|ref|YP_005055854.1| hypothetical protein [Granulicella mallensis MP5ACTX8]
gi|358751434|gb|AEU34824.1| Conserved hypothetical protein CHP00730 [Granulicella mallensis
MP5ACTX8]
Length = 333
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A +GA +AG G + + +PY+ L +F RK+
Sbjct: 152 SGGGPGIMEAANRGAWEAGGKTIGLNIKLPFEQMP----NPYITPALNLNFHYFFMRKYW 207
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A A+V PGG GTLDEMFE+L L Q ++ ++ V V+ S++K
Sbjct: 208 FAYLA--------KALVVFPGGFGTLDEMFELLTLAQTHKLAKKITV---VIYGSSYWKN 256
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
+++ E KD L++ D+ EA L + ++ +D
Sbjct: 257 VINLELLAEKGAIGLKD--MDLFEFADTPEEAFHILRDGLTMNHLD 300
>gi|395783642|ref|ZP_10463491.1| TIGR00730 family protein [Bartonella melophagi K-2C]
gi|395425764|gb|EJF91924.1| TIGR00730 family protein [Bartonella melophagi K-2C]
Length = 280
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE-TYLTCRFFSARKH 86
+G GPG+M+A +GA G P G V +W + P+L YLT R + H
Sbjct: 136 TGGGPGVMEAGNRGADDVGAPTIGLNVFLPHEQWPNTYVTPHLCFNFHYLTIR----KMH 191
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
LI A+ PGG GTLDE+FE L L+Q R+ VP L+ + F+
Sbjct: 192 FLIRAK---------ALAIFPGGFGTLDELFEALTLMQTGRMKK---VPILIFGKE-FWN 238
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++F G ++ ++ L+ ++ +A + FY L
Sbjct: 239 NVINF-DYLSTQGMISPSDI-DLFTFVNTAEQAFEVIRSFYKL 279
>gi|325068245|ref|ZP_08126918.1| hypothetical protein AoriK_10501 [Actinomyces oris K20]
Length = 251
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 25/184 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGE 60
P+ P Y + E+G +AR +G GPG+M+A +G +AG VG G ++ E G
Sbjct: 76 PEDPTYRMAMEVGAGLARA-GYAVITGGGPGMMEAANRGCHEAGGTSVGLGIELPHEQG- 133
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE L
Sbjct: 134 -----MNEYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGMGTLDELFEAL 178
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEA 179
L+Q ++I S P+ V+ ++ LL++L + G ++ + L + D EA
Sbjct: 179 TLVQTQKI-SSFPI---VLVDSGYWGGLLEWLRTTMIERGMISASD-PDLLHVVDDAEEA 233
Query: 180 LSYL 183
+ Y+
Sbjct: 234 VDYV 237
>gi|344171962|emb|CCA84588.1| conserved hypothetical protein; putative exported protein
[Ralstonia syzygii R24]
Length = 320
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 138 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 189
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 190 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 239
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
LIQ G VP +VM F+K LLD F G +A+ ++ + +I D +A
Sbjct: 240 TLIQ---TGKSRNVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKDA 294
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 295 LDAVYEFYE 303
>gi|302553945|ref|ZP_07306287.1| lysine decarboxylase [Streptomyces viridochromogenes DSM 40736]
gi|302471563|gb|EFL34656.1| lysine decarboxylase [Streptomyces viridochromogenes DSM 40736]
Length = 252
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA++A G VG G ++ E G
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGALEASGISVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ + P+ V+ ++ L+D+L D A ++ L+ + D EA++
Sbjct: 189 LVQTQKV-TRFPI---VLFGSEYWGGLVDWLRDTVIAQHKAAEKDLLLFHVTDDVDEAVA 244
Query: 182 YLAE 185
+++
Sbjct: 245 LVSK 248
>gi|255322030|ref|ZP_05363180.1| conserved hypothetical protein [Campylobacter showae RM3277]
gi|255301134|gb|EET80401.1| conserved hypothetical protein [Campylobacter showae RM3277]
Length = 184
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Query: 28 SGAGPGLMDAVTKGAMQAGK-PVGGFKVGKEAGEWTASNFHPYLPLET----YLTCRF-- 80
SG GPG+M+A KGA ++GK P G + LP E Y T F
Sbjct: 42 SGGGPGVMEAANKGAYESGKSPSVGLNI--------------VLPFEQVTNKYATTSFIF 87
Query: 81 --FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 138
SARK LI+ + +A + PGG GTLDE+FEIL L Q IG++ FL+
Sbjct: 88 SNLSARKFALIERS--------SAFLVFPGGFGTLDELFEILVLAQ---IGAKKAKIFLI 136
Query: 139 MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
F+ KL DF+ E SL+ I D
Sbjct: 137 GR--EFWSKLDDFIKTTLIREKAVSKEDLSLYTISD 170
>gi|320352524|ref|YP_004193863.1| hypothetical protein Despr_0390 [Desulfobulbus propionicus DSM
2032]
gi|320121026|gb|ADW16572.1| Conserved hypothetical protein CHP00730 [Desulfobulbus propionicus
DSM 2032]
Length = 223
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 19/152 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
G + P+Y+ + E G + + + +G GPG+M+A ++G +AG G +
Sbjct: 41 FGENSPYYIAARETAGLLVQQ-NLAVITGGGPGIMEAASRGCFEAGGTSVGLNI------ 93
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
HP LT R+F RK + A+ A V PGG GT+DE FE L
Sbjct: 94 ILPREQHPNHFQNRSLTFRYFFIRKLMFVRYAM--------AYVIFPGGFGTMDEFFESL 145
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
LIQ ++I P+ V+ S+++ LLD++
Sbjct: 146 TLIQTKKI-RRFPI---VLFGTSYWQGLLDWI 173
>gi|300703484|ref|YP_003745086.1| hypothetical protein RCFBP_11161 [Ralstonia solanacearum CFBP2957]
gi|299071147|emb|CBJ42460.1| conserved protein of unknown function [Ralstonia solanacearum
CFBP2957]
Length = 329
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 147 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 198
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 199 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 248
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ + +I D +A
Sbjct: 249 TLVQ---TGKSRSVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKDA 303
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 304 LDAVYEFYE 312
>gi|17546950|ref|NP_520352.1| hypothetical protein RSc2231 [Ralstonia solanacearum GMI1000]
gi|17429251|emb|CAD15938.1| conserved hypothetical protein 730 [Ralstonia solanacearum GMI1000]
Length = 317
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 135 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 186
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 187 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 236
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ + +I D +A
Sbjct: 237 TLVQ---TGKSRSVP-VVMFGSHFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKDA 291
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 292 LDAVYEFYE 300
>gi|409358119|ref|ZP_11236482.1| hypothetical protein Dali7_09674 [Dietzia alimentaria 72]
Length = 266
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKE--A 58
P P Y Q+ ELG + +G GPG M+A KGA +A G VG G ++ E
Sbjct: 78 PGDPAYEQAVELGRALTEAGYAVV-TGGGPGQMEAANKGAWEANGLSVGLGIELPMEQSV 136
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
W H R+F RK + A V PGG GTLDE FE
Sbjct: 137 NRWVELGLH----------FRYFFVRKTMFVKYT--------QAFVCTPGGFGTLDEFFE 178
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNS 177
+ L+Q ++I + P+ L ++ F+ L++++ G + G ++ ++ L + DS
Sbjct: 179 AITLVQTDKI-TRFPIVLLGVD---FWSPLVEWIRGTLAEQGMISASDL-DLMMVTDSVP 233
Query: 178 EALSYLAEFYDLSSIDKRVHEVNLKSTH 205
EA+ Y+ ++ +++ E H
Sbjct: 234 EAVEYIRRAHNRAAVTTEQREDQFGVEH 261
>gi|33602216|ref|NP_889776.1| hypothetical protein BB3240 [Bordetella bronchiseptica RB50]
gi|410419700|ref|YP_006900149.1| hypothetical protein BN115_1911 [Bordetella bronchiseptica MO149]
gi|412338366|ref|YP_006967121.1| hypothetical protein BN112_1042 [Bordetella bronchiseptica 253]
gi|427814160|ref|ZP_18981224.1| putative exported protein [Bordetella bronchiseptica 1289]
gi|427821369|ref|ZP_18988432.1| putative exported protein [Bordetella bronchiseptica D445]
gi|427823440|ref|ZP_18990502.1| putative exported protein [Bordetella bronchiseptica Bbr77]
gi|33576654|emb|CAE33732.1| putative exported protein [Bordetella bronchiseptica RB50]
gi|408446995|emb|CCJ58667.1| putative exported protein [Bordetella bronchiseptica MO149]
gi|408768200|emb|CCJ52960.1| putative exported protein [Bordetella bronchiseptica 253]
gi|410565160|emb|CCN22712.1| putative exported protein [Bordetella bronchiseptica 1289]
gi|410572369|emb|CCN20644.1| putative exported protein [Bordetella bronchiseptica D445]
gi|410588705|emb|CCN03765.1| putative exported protein [Bordetella bronchiseptica Bbr77]
Length = 190
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA +AG G VG ++ + Y + L+ +F +RK
Sbjct: 33 AGGGPGIMEAANKGAFEAG----GTSVGLNISLPHEAHNNEYQTIS--LSFEYFYSRKAT 86
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A VA+PGG GTLDE+FE L LIQ ++ P P +++ + F+
Sbjct: 87 FF--------MHSMAYVAMPGGFGTLDELFEALTLIQTGKVP---PAPIVLVGSE-FWHG 134
Query: 148 LLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
L+D+LG+ G +A ++ +L+ I D ++ + + EF+D
Sbjct: 135 LVDWLGEQLLANGMIAAHDL-NLFIIEDDPAKVVRKVVEFHD 175
>gi|374301541|ref|YP_005053180.1| hypothetical protein [Desulfovibrio africanus str. Walvis Bay]
gi|332554477|gb|EGJ51521.1| Conserved hypothetical protein CHP00730 [Desulfovibrio africanus
str. Walvis Bay]
Length = 309
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
+ +G GPG+M+A +GA + G + + A N PY+ + +F+
Sbjct: 147 NLVVMTGGGPGIMEAANRGAYEVDAQTIGLNIVLPFEQ--APN--PYITPDLSFQFHYFA 202
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK L+ A +VA PGG GT+DE+FE L LIQ G P+P L+ +
Sbjct: 203 IRKMHLLMRA--------KGLVAFPGGFGTMDELFETLTLIQ---TGKVEPIPVLLFGRE 251
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
F+ K+++F E A+D L++ ++ EA + LA+
Sbjct: 252 -FWNKVINFEALVEAGTIAARD--LKLFQYVETAEEAWTILAK 291
>gi|72160900|ref|YP_288557.1| hypothetical protein Tfu_0496 [Thermobifida fusca YX]
gi|71914632|gb|AAZ54534.1| Conserved hypothetical protein 730 [Thermobifida fusca YX]
Length = 269
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+ P+Y ELG EI R L T +G GPGLM+A KGA VGG +G
Sbjct: 78 PETPYY----ELGEEIGRKLVEAGYTVITGGGPGLMEAANKGAAD----VGGTSIGLGIE 129
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ + Y+ L + R+F RK + + A V LPGG GTLDE+FE
Sbjct: 130 LPFEQSLNDYVNLG--VVFRYFFVRKTMFVKYS--------QAFVVLPGGFGTLDELFEA 179
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
L L+Q +I + PV ++ F+ L++++ D
Sbjct: 180 LTLVQTGKI-TRFPV---ILVGTDFWGGLVEWIND 210
>gi|297571811|ref|YP_003697585.1| hypothetical protein Arch_1261 [Arcanobacterium haemolyticum DSM
20595]
gi|296932158|gb|ADH92966.1| conserved hypothetical protein [Arcanobacterium haemolyticum DSM
20595]
Length = 253
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
M P++PHY + ELG +A + +G GPG+M+A KGA AG G + E
Sbjct: 75 MKPENPHYAMAVELGKRLADA-NFAVITGGGPGVMEAANKGAQDAGGKSVGLSI-----E 128
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
H ++ + R+F RK + ++ V PGG GT+DE+FE L
Sbjct: 129 LPFEEGHNAF-IDLGVNFRYFFVRKVMCVKYSL--------GFVVFPGGFGTMDELFEAL 179
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+ ++ S PV V+ ++ L+ +L + SL+ + D+ EA+
Sbjct: 180 TLVSTRKV-SGFPV---VLVGSEYWGGLISWLEQTVLAEGMISPSDTSLFTVVDTAEEAM 235
Query: 181 SYLAE 185
+A+
Sbjct: 236 DAIAK 240
>gi|220905294|ref|YP_002480606.1| hypothetical protein Ddes_2032 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869593|gb|ACL49928.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 222
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 10 QSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
Q ++ +IA+LL + +G GPG+M+A KGA +AG G+ G
Sbjct: 57 QEYKDAEKIAKLLVDAGFGIITGGGPGVMEAANKGASEAG--------GESVG------L 102
Query: 67 HPYLP--------LETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
H +LP ++T R+F RK + A+ A V +PGG+GT+DE+ E
Sbjct: 103 HIHLPHEQGCNQYVKTRCNFRYFFIRKFMFVKYAM--------AYVVMPGGMGTIDELSE 154
Query: 119 ILALIQLERIGSELPVPFLVMNYD-SFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSN 176
L Q R PF ++ YD SF+ ++++L + G + + E+ L +CD+
Sbjct: 155 AFVLAQTGRTR-----PFPIVLYDSSFWSGMVEWLRKNMAGRGFINEKEIDRLITVCDTP 209
Query: 177 SEALSYLAEFYDL 189
E +++L + L
Sbjct: 210 EEVVNHLRKIVIL 222
>gi|299066167|emb|CBJ37350.1| conserved hypothetical protein; putative exported protein
[Ralstonia solanacearum CMR15]
Length = 321
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 139 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 190
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 191 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 240
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ + +I D +A
Sbjct: 241 TLVQ---TGKSRSVP-VVMFGSHFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKDA 295
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 296 LDAVYEFYE 304
>gi|227548429|ref|ZP_03978478.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079473|gb|EEI17436.1| possible Rossmann fold nucleotide-binding protein [Corynebacterium
lipophiloflavum DSM 44291]
Length = 275
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+G Y Q+ E+G + +G GPGLM+ +GA +AG G VG
Sbjct: 96 LGEGTAEYEQAREVGQALVEA-GYAVITGGGPGLMEGPNRGAHEAG----GLSVGLGIEL 150
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ ++ L L R+F ARK + + A + LPGG GTLDE+FE+L
Sbjct: 151 PFEQGLNDWVDLG--LNFRYFFARKTMFLKYS--------QAFITLPGGYGTLDEVFEVL 200
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
++Q ++ + P ++M D F+ L+D++ + + + L+ + DS EA+
Sbjct: 201 CMVQTGKVTN---FPIVLMGVD-FWSGLVDWIRGQQLARGLISEGDDQLFLVTDSVDEAV 256
Query: 181 SYLAEFYDLSSIDKRVHEVN 200
+Y+ E + + + D+R+ V
Sbjct: 257 AYIVEAHKVMT-DQRLKGVE 275
>gi|421891275|ref|ZP_16322086.1| conserved hypothetical protein [Ralstonia solanacearum K60-1]
gi|378963384|emb|CCF98834.1| conserved hypothetical protein [Ralstonia solanacearum K60-1]
Length = 329
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ + IARL + SG GPG+M+A KGA GK VG
Sbjct: 147 DSPYYQRTID----IARLFSDAGFAVISGGGPGIMEAANKGA-HGGKSA---SVGLNIEL 198
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 199 PHEQQGNPYQDIS--MRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEVL 248
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM F+K LLD F G +A+ ++ + +I D +A
Sbjct: 249 TLVQ---TGKSRSVP-VVMFGSRFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKDA 303
Query: 180 LSYLAEFYD 188
L + EFY+
Sbjct: 304 LDAVYEFYE 312
>gi|295690916|ref|YP_003594609.1| hypothetical protein Cseg_3564 [Caulobacter segnis ATCC 21756]
gi|295432819|gb|ADG11991.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756]
Length = 262
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 16/129 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +AG P GF + + +PY + +F+
Sbjct: 108 DNVIATGGGPGVMEAANRGAYEAGAPSIGFNITLPREQTP----NPYCTPDLTFRFHYFA 163
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK L A+R + A+V PGG GT DE+FEIL L Q ++ P+P ++ + +
Sbjct: 164 MRKMHL---AMRAN-----ALVVFPGGFGTFDELFEILTLRQTDKAP---PIPIVLFD-E 211
Query: 143 SFYKKLLDF 151
++++ +++F
Sbjct: 212 AYWRSIINF 220
>gi|404449442|ref|ZP_11014432.1| hypothetical protein A33Q_08927 [Indibacter alkaliphilus LW1]
gi|403765130|gb|EJZ26015.1| hypothetical protein A33Q_08927 [Indibacter alkaliphilus LW1]
Length = 244
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 24/188 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGEW 61
DHPHY + EL ++ R +G GPG+M+A KGA + G+ VG K+ EA
Sbjct: 68 DHPHYKVAEELSAKLVRH-GYGVITGGGPGIMEAANKGAASENGRSVGLCIKLPFEA--- 123
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ + + +F RK + V LPGG GTLDE+FE +
Sbjct: 124 ---KGNIYIDPDKMIMFDYFFVRKVMFTKYS--------QGFVVLPGGFGTLDELFEAMT 172
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEA 179
LIQ +IG P+ V+ ++ L+D++ E + + +++ L+ + D +EA
Sbjct: 173 LIQTIKIG-RFPI---VLVGKEYWSGLMDWIKSTLLEQYNYINAEDL-DLFILVDDATEA 227
Query: 180 LSYLAEFY 187
+ + +FY
Sbjct: 228 VKVIDDFY 235
>gi|348590444|ref|YP_004874906.1| hypothetical protein TASI_1129 [Taylorella asinigenitalis MCE3]
gi|347974348|gb|AEP36883.1| hypothetical protein TASI_1129 [Taylorella asinigenitalis MCE3]
Length = 222
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 21/179 (11%)
Query: 12 FELGGEIARLLDC---TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+ L +I+R L T SG GPG+M+A +GA + V G +G + +P
Sbjct: 49 YALTTDISRKLASAGFTIISGGGPGIMEAANRGAHE----VNGHSIGLNIKLPHETTNNP 104
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y Y ++F +RK + A + +PGG GT+DE+FE L L+Q
Sbjct: 105 YQSQSIYF--KYFVSRKTTFF--------MNSWAYIIMPGGFGTMDELFEALTLVQ---T 151
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
G P +++ + F+ LLDF+ + + + L + D E L + E+Y
Sbjct: 152 GKANKAPIILVGSE-FWSGLLDFIKNGQLANGYISPKDLDLISVTDDADEVLKIVTEYY 209
>gi|317485387|ref|ZP_07944266.1| hypothetical protein HMPREF0179_01619 [Bilophila wadsworthia 3_1_6]
gi|316923346|gb|EFV44553.1| hypothetical protein HMPREF0179_01619 [Bilophila wadsworthia 3_1_6]
Length = 200
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 26/185 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P++P Y + G IA+LL + + +G GPGLM+A KGA +AG G VG
Sbjct: 32 PENPLYAE----GETIAKLLVESGYGVITGGGPGLMEAGNKGATEAG----GTSVGLHIQ 83
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ Y+ + + R+F RK + A+ A V +PGG+GT+DE+ E
Sbjct: 84 LPHEQECNKYVKIRS--DYRYFFLRKLMFVKYAL--------AYVVMPGGMGTIDELSEA 133
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
L Q +RI P+P +++ +F+ LD++ G + EV L +CD+ +
Sbjct: 134 FVLAQTKRI---RPLP-IILYQSTFWNGFLDWVRSTMVSGGYIRASEVDDLVTVCDTPEQ 189
Query: 179 ALSYL 183
+ +
Sbjct: 190 VVQQI 194
>gi|294669761|ref|ZP_06734827.1| hypothetical protein NEIELOOT_01661 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308327|gb|EFE49570.1| hypothetical protein NEIELOOT_01661 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 243
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+HP YL L IAR L SG GPG+M+A KGA P G + +
Sbjct: 60 NHPDYL----LAELIARRLSDAGFAVISGGGPGIMEAANKGAFAGRSPAVGLNIVLPHEQ 115
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY L + + F RK + AV A V +PGG GTLDE+FE L
Sbjct: 116 QS----NPYQDLS--VKFQHFFPRKVMFVKHAV--------AYVVMPGGFGTLDELFESL 161
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +I P P +++ D F++ + D++ D K + L++ D+ E
Sbjct: 162 TLVQTGKIP---PRPIILVGRD-FWQGMTDWIADRLLTRGFIKPDDLDLFETADTADEVT 217
Query: 181 SYLAEFYD 188
+ Y+
Sbjct: 218 DIIFRHYE 225
>gi|206889729|ref|YP_002247984.1| hypothetical protein THEYE_A0133 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206741667|gb|ACI20724.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 222
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 33/187 (17%)
Query: 7 HYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAGEW 61
+Y ++F+ +ARLL +S G GPG+M+A KGA + GK +G ++ E
Sbjct: 48 YYQEAFK----VARLLSQAGFSIITGGGPGIMEAANKGAKIGRGKSIGLNIEIPHEQ--- 100
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
P L+ L R+F RK I ++ V PGG GTLDE+FE L
Sbjct: 101 -----RPNKYLDISLNFRYFFVRKLMFIKYSI--------GFVIFPGGFGTLDELFEALT 147
Query: 122 LIQLERIGSELPVPFLVMNYDS-FYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q +I + F V+ Y S ++K LLD F ++ G ++ D+ ++I D+
Sbjct: 148 LVQTGKI-----ISFPVVLYGSEYWKGLLDWFKNSPKNLGAISLDDF-KYFEIIDNPEAV 201
Query: 180 LSYLAEF 186
YL +
Sbjct: 202 CGYLRNY 208
>gi|163788862|ref|ZP_02183307.1| hypothetical protein FBALC1_11512 [Flavobacteriales bacterium
ALC-1]
gi|159876099|gb|EDP70158.1| hypothetical protein FBALC1_11512 [Flavobacteriales bacterium
ALC-1]
Length = 228
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDH +Y + E+ +I +G GPG+M+A KGA AG G VG
Sbjct: 52 PDHKYYKLAEEVASKIVEH-GYGVITGGGPGIMEAGNKGAHIAG----GTSVGLNIELPF 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 107 EQHDNPYIDNDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITL 158
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALS 181
IQ +I P+ ++ F+ L D++ D G ++ ++ L + DS E +
Sbjct: 159 IQTHKI-ETFPI---ILVGKEFWGGLFDWVKTTLLDAGNISPKDL-DLIHLVDSGDEVID 213
Query: 182 YLAEFY 187
L +FY
Sbjct: 214 ILNDFY 219
>gi|345886304|ref|ZP_08837562.1| hypothetical protein HMPREF0178_00336 [Bilophila sp. 4_1_30]
gi|345038622|gb|EGW43023.1| hypothetical protein HMPREF0178_00336 [Bilophila sp. 4_1_30]
Length = 216
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 26/185 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P++P Y + G IA+LL + + +G GPGLM+A KGA +AG G VG
Sbjct: 48 PENPLYAE----GETIAKLLVESGYGVITGGGPGLMEAGNKGATEAG----GTSVGLHIQ 99
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ Y+ + + R+F RK + A+ A V +PGG+GT+DE+ E
Sbjct: 100 LPHEQECNKYVKIRS--DYRYFFLRKLMFVKYAL--------AYVVMPGGMGTIDELSEA 149
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
L Q +RI P+P +++ +F+ LD++ G + EV L +CD+ +
Sbjct: 150 FVLAQTKRI---RPLP-IILYQSTFWNGFLDWVRSTMVSGGYIRASEVDDLITVCDTPEQ 205
Query: 179 ALSYL 183
+ +
Sbjct: 206 VVQQI 210
>gi|336314921|ref|ZP_08569835.1| TIGR00730 family protein [Rheinheimera sp. A13L]
gi|335880748|gb|EGM78633.1| TIGR00730 family protein [Rheinheimera sp. A13L]
Length = 292
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A KGA + GG +G +PY+ E +F+ RK
Sbjct: 149 SGGGPGIMEAANKGAYE----TGGQSIGLNIVLPHEQKPNPYITPEFCFRFHYFAIRKMH 204
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD-SFYK 146
+ A A+VA PGG GTLDE+FE L L+Q G VP V+ YD +F+
Sbjct: 205 FLQRA--------RALVAFPGGFGTLDELFETLTLLQ---TGKANTVP--VILYDKNFWS 251
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+L++F E+ A+D L + D+ +A + Y L
Sbjct: 252 RLINFDLLVEEGLIKAED--MQLIQFVDTPEQAWQAICHCYQL 292
>gi|392384279|ref|YP_005033475.1| 3-isopropylmalate dehydrogenase [Azospirillum brasilense Sp245]
gi|356880994|emb|CCD01964.1| 3-isopropylmalate dehydrogenase [Azospirillum brasilense Sp245]
Length = 286
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPGLM+A +GA +AG P GF + + +PY E +F+
Sbjct: 119 DNVIATGGGPGLMEAANRGAQEAGAPSIGFNISLP----QEPHPNPYSTPELTFRFHYFA 174
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A+R + + PGG GT DE FEIL L + S LP+ F+ +Y
Sbjct: 175 IRK---MHLAMRAN-----GLAIFPGGFGTFDEAFEILNLRNTNK-ASRLPIVFVGRDY- 224
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
+ ++++F D G ++ ++ L+ I D+ EA
Sbjct: 225 --WNEVVNFRA-LADHGMISAGDL-ELFDIADTAEEA 257
>gi|352094042|ref|ZP_08955213.1| Conserved hypothetical protein CHP00730 [Synechococcus sp. WH 8016]
gi|351680382|gb|EHA63514.1| Conserved hypothetical protein CHP00730 [Synechococcus sp. WH 8016]
Length = 301
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G + + N +PY+ E +F+ RK
Sbjct: 153 TGGGPGIMEAANRGAFDAGCRSIGLNIELPHEQ----NPNPYITPELCFKFNYFALRKFH 208
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ AV V PGG GTLDE+FE+L L Q +G++ +P ++ D ++ +
Sbjct: 209 FVMRAV--------GAVLFPGGYGTLDELFEVLTLRQ---VGTQHAMPIILFGKD-YWTR 256
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
L+DF D G + D+ L + D+ +EA L
Sbjct: 257 LIDF-EYMADSGLI-DDQDLDLIQFADTATEAWDLL 290
>gi|226228267|ref|YP_002762373.1| hypothetical protein GAU_2861 [Gemmatimonas aurantiaca T-27]
gi|226091458|dbj|BAH39903.1| hypothetical protein GAU_2861 [Gemmatimonas aurantiaca T-27]
Length = 250
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
GPD P Y + E ARLL +S GAGPG+M+A KGA + GK G VG
Sbjct: 71 GPDDPQY----QAARETARLLAEQGFSIITGAGPGIMEAANKGARE-GK---GHSVGCNI 122
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+PY+ +T + R+F RK I + A + PGG GTLDE+FE
Sbjct: 123 ELPFEQGANPYV--DTLVNFRYFFVRKTMFIKYS--------NAFIIFPGGFGTLDELFE 172
Query: 119 ILALIQLERIGSELPVPFLVMNY 141
L L+Q +I + P+ +Y
Sbjct: 173 ALTLVQTGKI-YQFPIILFGRHY 194
>gi|94971110|ref|YP_593158.1| hypothetical protein Acid345_4084 [Candidatus Koribacter versatilis
Ellin345]
gi|94553160|gb|ABF43084.1| conserved hypothetical protein 730 [Candidatus Koribacter
versatilis Ellin345]
Length = 275
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
H +Y E+G E+A+ +G GPG+M+A +GA +AG G + + A
Sbjct: 101 HKYYDLGCEVGRELAKA-GFAVLTGGGPGMMEAANRGAKEAGGASLGLNIILPFEQ--AP 157
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
N PY+ + + +F RK L+ SC A + LPGG GTLDE+FE LIQ
Sbjct: 158 N--PYV--DQTIEFHYFFVRKVCLVKY-----SC---AFICLPGGFGTLDELFEAATLIQ 205
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
+IG P P +++ + F+ + DF G + ++ +I DS EA+ +
Sbjct: 206 CGKIG---PFPLILIG-EEFWSGVRDFTAHLLGEGAIGMEDTG-FARITDSPKEAVELV 259
>gi|134301638|ref|YP_001121606.1| hypothetical protein FTW_0578 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751404|ref|ZP_16188451.1| hypothetical protein B345_02799 [Francisella tularensis subsp.
tularensis AS_713]
gi|421753256|ref|ZP_16190255.1| hypothetical protein B344_02760 [Francisella tularensis subsp.
tularensis 831]
gi|421756986|ref|ZP_16193875.1| hypothetical protein B342_02794 [Francisella tularensis subsp.
tularensis 80700103]
gi|421758847|ref|ZP_16195687.1| hypothetical protein B341_02804 [Francisella tularensis subsp.
tularensis 70102010]
gi|424674166|ref|ZP_18111090.1| hypothetical protein B229_02765 [Francisella tularensis subsp.
tularensis 70001275]
gi|134049415|gb|ABO46486.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409087675|gb|EKM87764.1| hypothetical protein B344_02760 [Francisella tularensis subsp.
tularensis 831]
gi|409087862|gb|EKM87949.1| hypothetical protein B345_02799 [Francisella tularensis subsp.
tularensis AS_713]
gi|409091686|gb|EKM91677.1| hypothetical protein B341_02804 [Francisella tularensis subsp.
tularensis 70102010]
gi|409092993|gb|EKM92953.1| hypothetical protein B342_02794 [Francisella tularensis subsp.
tularensis 80700103]
gi|417435226|gb|EKT90143.1| hypothetical protein B229_02765 [Francisella tularensis subsp.
tularensis 70001275]
Length = 237
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 82 TGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ------RPNQYQDIFLIYRYFFTRKAM 135
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ D F+
Sbjct: 136 FIKHSM--------SYIVMPGGFGTLDELFDITTLIQ---TGKKVKMPIILYGKD-FWGG 183
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
L++++ V +E +L + DS E + +AE Y +S+ + H
Sbjct: 184 LMEWIKTTLVGKGVISEEEVNLLTLVDSIDETIEIIAEHY-MSTYSSKAH 232
>gi|381164494|ref|ZP_09873724.1| TIGR00730 family protein [Saccharomonospora azurea NA-128]
gi|418463130|ref|ZP_13034154.1| hypothetical protein SZMC14600_19284 [Saccharomonospora azurea SZMC
14600]
gi|359734378|gb|EHK83355.1| hypothetical protein SZMC14600_19284 [Saccharomonospora azurea SZMC
14600]
gi|379256399|gb|EHY90325.1| TIGR00730 family protein [Saccharomonospora azurea NA-128]
Length = 260
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP Y +LG +I L + +G GPG M+AV +GA +AG G VG
Sbjct: 89 DHPEY----QLGRQIGAALAGAGFAAITGGGPGAMEAVNRGASEAG----GLSVGLGIEL 140
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+P++ L + R+F ARK + + A + LPGG GTLDE+FE L
Sbjct: 141 PFEQGLNPWVDLG--VNFRYFFARKTMFVKYS--------QAFICLPGGFGTLDELFEAL 190
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +++ ++ PV V+ S++ L D++ D + +L + D +A+
Sbjct: 191 TLVQTKKV-TKFPV---VLFGTSYWGGLYDWVRDTVLAEGKINERDMTLLHVTDDIDDAV 246
Query: 181 SYLAEFY 187
+ E Y
Sbjct: 247 GVVQEAY 253
>gi|331694880|ref|YP_004331119.1| hypothetical protein Psed_1015 [Pseudonocardia dioxanivorans
CB1190]
gi|326949569|gb|AEA23266.1| Conserved hypothetical protein CHP00730 [Pseudonocardia
dioxanivorans CB1190]
Length = 254
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 19/149 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y Q +LG +A+ +G GPG M+A +G +AG GF VG
Sbjct: 83 DHPEYQQGRDLGAALAQN-GFAVITGGGPGSMEAANRGCSEAG----GFSVGLGIELPFE 137
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ L + R+F ARK + + A V LPGG GTLDE+FE L L+
Sbjct: 138 HGLNDWVDLG--INFRYFFARKTMFVKYS--------QAFVCLPGGFGTLDELFEALTLV 187
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL 152
Q +++ ++ PV L +Y ++ L D++
Sbjct: 188 QTKKV-TKFPVVLLGKDY---WQGLYDWI 212
>gi|365869327|ref|ZP_09408874.1| hypothetical protein MMAS_12750 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|414580581|ref|ZP_11437721.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-1215]
gi|418249027|ref|ZP_12875349.1| hypothetical protein MAB47J26_10077 [Mycobacterium abscessus 47J26]
gi|420876548|ref|ZP_15339920.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0304]
gi|420881908|ref|ZP_15345272.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0421]
gi|420888148|ref|ZP_15351502.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0422]
gi|420893671|ref|ZP_15357013.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0708]
gi|420898209|ref|ZP_15361545.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0817]
gi|420903960|ref|ZP_15367281.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-1212]
gi|420930491|ref|ZP_15393767.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-151-0930]
gi|420938357|ref|ZP_15401626.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-152-0914]
gi|420940741|ref|ZP_15404004.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-153-0915]
gi|420946094|ref|ZP_15409347.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-154-0310]
gi|420951008|ref|ZP_15414254.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0626]
gi|420955179|ref|ZP_15418418.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0107]
gi|420960580|ref|ZP_15423809.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-1231]
gi|420970734|ref|ZP_15433932.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0921]
gi|420991148|ref|ZP_15454300.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0307]
gi|420996983|ref|ZP_15460123.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0912-R]
gi|421001415|ref|ZP_15464546.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0912-S]
gi|421048186|ref|ZP_15511182.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|353450682|gb|EHB99076.1| hypothetical protein MAB47J26_10077 [Mycobacterium abscessus 47J26]
gi|363998784|gb|EHM19990.1| hypothetical protein MMAS_12750 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392090225|gb|EIU16038.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0304]
gi|392090963|gb|EIU16774.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0421]
gi|392092708|gb|EIU18513.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0422]
gi|392102261|gb|EIU28048.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0708]
gi|392107450|gb|EIU33232.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0817]
gi|392109218|gb|EIU34996.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-1212]
gi|392115733|gb|EIU41501.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-1215]
gi|392139509|gb|EIU65241.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-151-0930]
gi|392143872|gb|EIU69597.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-152-0914]
gi|392156217|gb|EIU81922.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-153-0915]
gi|392159302|gb|EIU84998.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
1S-154-0310]
gi|392160785|gb|EIU86476.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0626]
gi|392172939|gb|EIU98609.1| methionyl-tRNA formyltransferase [Mycobacterium abscessus 5S-0921]
gi|392189227|gb|EIV14861.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0912-R]
gi|392190159|gb|EIV15791.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0307]
gi|392201005|gb|EIV26608.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0912-S]
gi|392242351|gb|EIV67838.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense CCUG
48898]
gi|392254975|gb|EIV80438.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-1231]
gi|392255707|gb|EIV81168.1| methionyl-tRNA formyltransferase [Mycobacterium massiliense
2B-0107]
Length = 250
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 21/182 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P Y +LG + +G GPG M+A +GA ++G G+ VG
Sbjct: 77 PDSPEYRLGRDLGTALVNA-GYAVITGGGPGAMEAANRGASESG----GYSVGLGIELPF 131
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ ++ L + R+F RK + A A V LPGG GTLDE+FE L L
Sbjct: 132 EQGLNEWVDLG--INFRYFFVRKTMFVKYA--------QAFVCLPGGFGTLDELFEALTL 181
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
+Q ++ + P+ L Y + LLD++ G G V + ++A L + DS EA+
Sbjct: 182 VQTRKV-TRFPIILLGTEY---WSGLLDWIRGTMLPAGKVGEQDIA-LLSVTDSVDEAVD 236
Query: 182 YL 183
+
Sbjct: 237 II 238
>gi|384197146|ref|YP_005582890.1| hypothetical protein HMPREF9228_1051 [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110879|gb|AEF27895.1| TIGR00730 family protein [Bifidobacterium breve ACS-071-V-Sch8b]
Length = 300
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 139 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPFEQGLNQW-- 195
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK + + + V+ PGG GTLDEMFE+L L+
Sbjct: 196 --------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTLDEMFELLTLV 239
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +P ++ D +++ L D+L G + G ++K + L + D EA+
Sbjct: 240 QTHKVAN---IPVVLYGKD-YWQGLFDWLDGPVAERGMISKID-PKLVTVTDDADEAV 292
>gi|291456566|ref|ZP_06595956.1| methionyl-tRNA formyltransferase [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|417943254|ref|ZP_12586506.1| Methionyl-tRNA formyltransferase [Bifidobacterium breve CECT 7263]
gi|291381843|gb|EFE89361.1| methionyl-tRNA formyltransferase [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|339479023|gb|ABE95484.1| Lysine decarboxylase family [Bifidobacterium breve UCC2003]
gi|376165791|gb|EHS84731.1| Methionyl-tRNA formyltransferase [Bifidobacterium breve CECT 7263]
Length = 300
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 139 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPFEQGLNQW-- 195
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK + + + V+ PGG GTLDEMFE+L L+
Sbjct: 196 --------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTLDEMFELLTLV 239
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +P ++ D +++ L D+L G + G ++K + L + D EA+
Sbjct: 240 QTHKVAN---IPVVLYGKD-YWQGLFDWLDGPVAERGMISKID-PKLVTVTDDADEAV 292
>gi|160871728|ref|ZP_02061860.1| decarboxylase family protein [Rickettsiella grylli]
gi|159120527|gb|EDP45865.1| decarboxylase family protein [Rickettsiella grylli]
Length = 291
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA + V +G + +PY+ + +F+ RK H
Sbjct: 147 TGGGPGIMEAANRGA----QDVNAKSIGLNIVLPHEQSPNPYISPDLCFQFHYFAIRKMH 202
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
LI A+V PGG GTLDE+FE L L+Q ++I P+P L+ ++
Sbjct: 203 FLIRA---------RALVCFPGGYGTLDELFEALTLLQTKKIK---PIPLLLFG-KKYWS 249
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
KL++F + G + +++ ++ ++ +A +A+FY+L+
Sbjct: 250 KLINFNFLVSE-GMIDVNDL-KFFRYVETAEQAWKIIAQFYNLT 291
>gi|309781709|ref|ZP_07676442.1| decarboxylase [Ralstonia sp. 5_7_47FAA]
gi|308919350|gb|EFP65014.1| decarboxylase [Ralstonia sp. 5_7_47FAA]
Length = 248
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 29/190 (15%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVG-GFKVGKEAG 59
D P+Y ++ E IARL SG GPG+M+A KGA AGK G + +
Sbjct: 66 DSPYYERTIE----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSASVGLNI-ELPH 119
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E + + + + R F RK + + A + +PGG GTLDE+ E+
Sbjct: 120 EQQGNRYQ-----DISMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGTLDELAEV 166
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q G VP +VM F+K LLD F G +A+ ++ + +I D +
Sbjct: 167 LTLVQ---TGKSRSVP-VVMFGSHFWKGLLDWFRFTLLPMGLIAEHDL-DIMRIVDEPKD 221
Query: 179 ALSYLAEFYD 188
AL + EFY+
Sbjct: 222 ALDAVYEFYE 231
>gi|343084934|ref|YP_004774229.1| hypothetical protein [Cyclobacterium marinum DSM 745]
gi|342353468|gb|AEL25998.1| Conserved hypothetical protein CHP00730 [Cyclobacterium marinum DSM
745]
Length = 240
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVGGFKVGKEAGEWT 62
DHP+Y + + ++ R +G GPG+M+A KGA + GK VG
Sbjct: 64 DHPNYKSAEAIAAKLVRH-GYGVITGGGPGIMEAGNKGAHSENGKSVG------------ 110
Query: 63 ASNFHPYLPLETY----------LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
+ LP E + +T +F RK + V LPGG GT
Sbjct: 111 ---LNIVLPFEQFNNVYIDPDKLITFDYFFVRKVMFTKYS--------QGFVVLPGGFGT 159
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLW 170
+DE+FE L LIQ ++IG P+ V+ +++ L++++ E + ++K+++ L+
Sbjct: 160 MDELFEALTLIQTKKIG-RFPI---VLVGRVYWEGLIEWIKSTMLESFENISKEDL-DLF 214
Query: 171 KICDSNSEALSYLAEFYD 188
+ D+ EA++ + EFY+
Sbjct: 215 VLVDTADEAVNAIDEFYN 232
>gi|407424623|gb|EKF39063.1| hypothetical protein MOQ_000716 [Trypanosoma cruzi marinkellei]
Length = 327
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 23/170 (13%)
Query: 21 LLDCTTWSGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLT 77
LD +G GPG M+A +GA ++ + +G G + E G + Y+
Sbjct: 174 FLDLVITTGGGPGFMEAANRGAASVEGVETMGMGISLPFEKG------LNRYISRGLAFE 227
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F RK ++ SC A+ PGG GTLDEMFE+L L Q ++I +LP+
Sbjct: 228 FHYFFTRKFWMMY------SC--RAIFIAPGGFGTLDEMFELLTLRQTKKI-PDLPI--- 275
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
V+ SF+K ++++ E +GTV+K E+ SL D+ EA+ ++ F+
Sbjct: 276 VLLGSSFWKTVINWEALVE-FGTVSKGEIDSLC-FADTVQEAIEFITGFF 323
>gi|312131285|ref|YP_003998625.1| hypothetical protein Lbys_2610 [Leadbetterella byssophila DSM
17132]
gi|311907831|gb|ADQ18272.1| Conserved hypothetical protein CHP00730 [Leadbetterella byssophila
DSM 17132]
Length = 236
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+H +Y ++ EL I+ L T +G GPG+M+A +GA AG P + E
Sbjct: 55 NHIYYKKARELSARIS-TLGFTIMTGGGPGIMEAANRGAKDAGGPSVACNI--ELPHEQH 111
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+N PYL + ++ +FF RK LI + A V PGG GTLDE FE L LI
Sbjct: 112 AN--PYL--DKFVNFKFFFVRKTLLIKYSY--------AFVICPGGFGTLDEFFEALTLI 159
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q E+I + PV V+ ++ ++ + D T++ + L+ + DS EA+ ++
Sbjct: 160 QTEKI-EQFPV---VVFGSEYHDHMIKHIKSMVDQKTISLKD-PDLFIVTDSIDEAVEFI 214
Query: 184 AEFYD 188
+ D
Sbjct: 215 RQKTD 219
>gi|359420620|ref|ZP_09212553.1| hypothetical protein GOARA_061_00610 [Gordonia araii NBRC 100433]
gi|358243403|dbj|GAB10622.1| hypothetical protein GOARA_061_00610 [Gordonia araii NBRC 100433]
Length = 257
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 25/148 (16%)
Query: 10 QSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEWTAS 64
+++ELG ++ R + + +G GPG M++V +GA QAG + +G G ++ E G
Sbjct: 89 EAYELGVDLGRAIGEAGYAVITGGGPGSMESVNRGARQAGARSIGLGIELPFEQG----- 143
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+P++ + + R+F ARK I A A V LPGG GTLDE+FE L L+Q
Sbjct: 144 -LNPFIDIG--VNFRYFFARKTMFIKYA--------QAFVCLPGGFGTLDELFEALTLVQ 192
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFL 152
++ ++ P+ ++ F+ L+D++
Sbjct: 193 THKV-TQFPI---ILVGSEFWGGLVDWI 216
>gi|225874006|ref|YP_002755465.1| hypothetical protein ACP_2427 [Acidobacterium capsulatum ATCC
51196]
gi|225793332|gb|ACO33422.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
51196]
Length = 307
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 17/156 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A +GA +AG G + + P L E + +F RK+
Sbjct: 139 SGGGPGIMEAANRGAYEAGGKTIGLNIRLPFEQEPNRYITPALNFEFH----YFFMRKYW 194
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A A+V PGG GTLDEMFEIL L Q ++ ++ + V+ S++K+
Sbjct: 195 FAYLA--------KALVVFPGGFGTLDEMFEILTLSQTNKLAKKIGI---VVYGSSYWKQ 243
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
+++ + A D L++ D+ EA + L
Sbjct: 244 VINLDALVQKGAISAADR--ELFQFADTPEEAFALL 277
>gi|254509766|ref|ZP_05121833.1| conserved hypothetical protein TIGR00730 [Rhodobacteraceae
bacterium KLH11]
gi|221533477|gb|EEE36465.1| conserved hypothetical protein TIGR00730 [Rhodobacteraceae
bacterium KLH11]
Length = 280
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G + + A N Y+ E +F+ RK
Sbjct: 128 TGGGPGVMEAGNRGAQDAGGCSIGLNIVLPHEQ--APNL--YVTPELSFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GT+DE+FE L LIQ R+ PVPFL+ +F++K
Sbjct: 184 FLMRA--------RAITIFPGGFGTMDELFESLTLIQTGRME---PVPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++ DE L++ D+ EA+ +
Sbjct: 232 VINWEA-LADAGTIS-DEDLGLFRFVDTAQEAVDII 265
>gi|56707892|ref|YP_169788.1| hypothetical protein FTT_0781c [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670363|ref|YP_666920.1| hypothetical protein FTF0781c [Francisella tularensis subsp.
tularensis FSC198]
gi|187931758|ref|YP_001891743.1| hypothetical protein FTM_1057 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254370383|ref|ZP_04986388.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874703|ref|ZP_05247413.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717137|ref|YP_005305473.1| hypothetical protein FTU_0821 [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725741|ref|YP_005317927.1| hypothetical protein FTV_0737 [Francisella tularensis subsp.
tularensis TI0902]
gi|385794542|ref|YP_005830948.1| hypothetical protein NE061598_04495 [Francisella tularensis subsp.
tularensis NE061598]
gi|421755417|ref|ZP_16192362.1| hypothetical protein B343_04472 [Francisella tularensis subsp.
tularensis 80700075]
gi|54112569|gb|AAV28918.1| NT02FT0336 [synthetic construct]
gi|56604384|emb|CAG45414.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320696|emb|CAL08797.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568626|gb|EDN34280.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|187712667|gb|ACD30964.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254840702|gb|EET19138.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159077|gb|ADA78468.1| hypothetical protein NE061598_04495 [Francisella tularensis subsp.
tularensis NE061598]
gi|377827190|gb|AFB80438.1| hypothetical protein FTV_0737 [Francisella tularensis subsp.
tularensis TI0902]
gi|377828814|gb|AFB78893.1| hypothetical protein FTU_0821 [Francisella tularensis subsp.
tularensis TIGB03]
gi|409088134|gb|EKM88213.1| hypothetical protein B343_04472 [Francisella tularensis subsp.
tularensis 80700075]
Length = 237
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 82 TGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ------RPNQYQDIFLIYRYFFTRKAM 135
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ D F+
Sbjct: 136 FIKHSM--------SYIVMPGGFGTLDELFDITTLIQ---TGKKVKIPIILYGKD-FWGG 183
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
L++++ V +E +L + DS E + +AE Y +++ + H
Sbjct: 184 LMEWIKTTLVGKGVISEEEVNLLTLVDSIDETIEIIAEHY-MNTYSSKAH 232
>gi|387887155|ref|YP_006317454.1| hypothetical protein OOM_1599 [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871971|gb|AFJ43978.1| hypothetical protein OOM_1599 [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 237
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 22/198 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ D +Y + EL ++ +G GPG+M+A KGA Q G + +
Sbjct: 56 ISEDDKYYKDTVELAKSLSNH-GFAVITGGGPGIMEAGNKGAQQGSCSSIGLNIALPHEQ 114
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
P + +L R+F RK I ++ + + +PGG GTLDE+F+I
Sbjct: 115 ------KPNSYQDVFLIYRYFFTRKAMFIKHSM--------SYIVMPGGFGTLDELFDIT 160
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
LIQ G ++ +P ++ D F+ L++++ G V+K++V +L + DS E
Sbjct: 161 TLIQ---TGKKVKMPIILYGKD-FWGGLMEWIKTTLVQKGVVSKEDV-NLLTLVDSIDEV 215
Query: 180 LSYLAEFYDLSSIDKRVH 197
L +AE Y +++ + H
Sbjct: 216 LEIVAEHY-MNTYSSKAH 232
>gi|365827864|ref|ZP_09369704.1| hypothetical protein HMPREF0975_01487 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365264674|gb|EHM94471.1| hypothetical protein HMPREF0975_01487 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 251
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
+ P Y + E+G +AR +G GPG+M+A +G +AG VG G ++ E G
Sbjct: 77 EDPAYRAAVEVGAGLARA-GYAVITGGGPGMMEAANRGCHEAGGTSVGLGIELPHEQG-- 133
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE L
Sbjct: 134 ----MNDYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGMGTLDELFEALT 179
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++I S P+ + Y + LL+++ D GT++ + L + D EA+
Sbjct: 180 LVQTQKI-SSFPIALVDSGY---WGGLLEWVRTTMIDRGTISSTD-PDLLHVVDGAEEAV 234
Query: 181 SYL 183
Y+
Sbjct: 235 DYV 237
>gi|33866479|ref|NP_898038.1| hypothetical protein SYNW1947 [Synechococcus sp. WH 8102]
gi|33633257|emb|CAE08462.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 298
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G + + +PY+ + +FS RK
Sbjct: 151 TGGGPGIMEAANRGAFDAGCRSIGLNITLPFEQHP----NPYITPDLCFKFNYFSLRKFH 206
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ +V + PGG GTLDE+FE+L L Q +G++ +P ++ + F+ K
Sbjct: 207 FVMRSV--------GAILFPGGFGTLDELFELLTLRQ---VGTKGRMPIVLFGTE-FWTK 254
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
L+DF E G ++ D++A L + D+ EA Y+
Sbjct: 255 LVDFDYLAES-GLISNDDLA-LIRFSDTAEEAWEYI 288
>gi|312194602|ref|YP_004014663.1| hypothetical protein FraEuI1c_0715 [Frankia sp. EuI1c]
gi|311225938|gb|ADP78793.1| Conserved hypothetical protein CHP00730 [Frankia sp. EuI1c]
Length = 331
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 80/190 (42%), Gaps = 35/190 (18%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y LG + +G GPG M+A +GA +AG G VG
Sbjct: 156 DHPDYEVGRRLGAALVEA-GFAVITGGGPGAMEAANRGAQEAG----GLSVG-------- 202
Query: 64 SNFHPYLPLETYL--------TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
LP E L + R+F RK + A A V LPGG+GTLDE
Sbjct: 203 --LGIELPFEQKLNDWVDLGVSFRYFFVRKTMFVKYA--------EAFVILPGGLGTLDE 252
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L L+Q ++ PV L +Y ++ LLD+L KD L+ + D
Sbjct: 253 LFEALTLVQTGKV-RRFPVVLLGTDY---WRGLLDWLRGTVVGTARMKDTDLDLFSLTDD 308
Query: 176 NSEALSYLAE 185
EA+ + +
Sbjct: 309 VDEAVRLVVD 318
>gi|268604498|ref|ZP_06138665.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268687380|ref|ZP_06154242.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268588629|gb|EEZ53305.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268627664|gb|EEZ60064.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 210
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + G +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHTDYAFGCRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIALPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + ASL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGMISEGAASLFSISDDEDEIIAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|317970451|ref|ZP_07971841.1| Rossmann fold nucleotide-binding protein [Synechococcus sp. CB0205]
Length = 346
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 44/200 (22%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+ P Y + EL E AR +GAG G+M+A +GA G +
Sbjct: 80 PEEPAYALAEELAREAARR-GFEVMTGAGGGVMEAANRGA----------------GCES 122
Query: 63 ASNFHPYLPLETY------------LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGV 110
+ + LP E + L R+F RK + + A+V +PGG
Sbjct: 123 SIGLNVDLPFEQHANRYVNACDGRLLHFRYFFTRKLFFLR--------ESDALVVMPGGF 174
Query: 111 GTLDEMFEILALIQLERIGSELPVPFLVM--NYDSFYKKLLDFL-GDCEDWGTVAKDEVA 167
GT DE+FE L LIQ G P+P +++ DSF+ L + G +D ++ ++
Sbjct: 175 GTFDELFESLTLIQ---TGRTPPIPLVLLAPENDSFWSDWLKTIDGTLQDRALISSEDT- 230
Query: 168 SLWKICDSNSEALSYLAEFY 187
SL+K S +EAL ++ FY
Sbjct: 231 SLFKQARSAAEALEQISRFY 250
>gi|238024947|ref|YP_002909179.1| decarboxylase family protein [Burkholderia glumae BGR1]
gi|237879612|gb|ACR31944.1| decarboxylase family protein [Burkholderia glumae BGR1]
Length = 255
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 27/199 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D HY +L +IAR L + SG GPG+M+A +GA P G + + E
Sbjct: 62 DSAHY----QLATQIARKLSDAGFAVISGGGPGIMEAANQGAHAGKAPSVGLNI-ELPHE 116
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +++ + L R F RK + + AVV +PGG GTLDE+ E+L
Sbjct: 117 QSGNHYQ-----DISLRFRHFFTRKVTFVKNS--------DAVVVMPGGFGTLDELSEVL 163
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEA 179
LIQ ++ S L VP +++ + F++ LL + D G + D++ +L ++ D +
Sbjct: 164 TLIQTKK--SRL-VPIILVGSE-FWQGLLQWFRDQLIPMGLINPDDM-NLMQVIDDPDQV 218
Query: 180 LSYLAEFYDLSSIDKRVHE 198
L + FY+ + D E
Sbjct: 219 LEAVLAFYEDTGEDGSAQE 237
>gi|241663634|ref|YP_002981994.1| hypothetical protein Rpic12D_2043 [Ralstonia pickettii 12D]
gi|240865661|gb|ACS63322.1| conserved hypothetical protein [Ralstonia pickettii 12D]
Length = 317
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 43/197 (21%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y ++ E IARL + SG GPG+M+A KGA AG+
Sbjct: 135 DSPYYERTIE----IARLFSDAGFAVISGGGPGIMEAANKGA--------------HAGK 176
Query: 61 WTASNFHPYLPLETY--------LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
+ + LP E + R F RK + + A + +PGG GT
Sbjct: 177 SASVGLNIELPHEQQGNRYQDISMRFRHFFTRKVTFVK--------NSDAFIVMPGGFGT 228
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWK 171
LDE+ E+L L+Q G VP ++M F+K LLD F G +A+ ++ + +
Sbjct: 229 LDELAEVLTLVQ---TGKSRSVP-VIMFGSHFWKGLLDWFRFTLLPMGLIAEHDL-DIMR 283
Query: 172 ICDSNSEALSYLAEFYD 188
I D +AL + EFY+
Sbjct: 284 IVDEPKDALDAVYEFYE 300
>gi|315656375|ref|ZP_07909264.1| methionyl-tRNA formyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492934|gb|EFU82536.1| methionyl-tRNA formyltransferase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 269
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 27/178 (15%)
Query: 12 FELGGEIARLLDCTTWS---GAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAGEWTASNF 66
++LG EI ++ +S G GPGLM+AV+KGA G +G G ++ E G
Sbjct: 105 YQLGEEIGKVFAEAGFSIITGGGPGLMEAVSKGAHTHDGSTIGLGIELPHEQG------I 158
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+ Y+ L + R+F RK + A A VALPGG GTLDE+FE + L Q
Sbjct: 159 NQYVDLG--VEFRYFFVRKTMFVKYA--------QAFVALPGGFGTLDELFECVTLRQTS 208
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYL 183
+I P +++ +D F+ LL ++ G V+ DEV + ++ ++ +EAL+ +
Sbjct: 209 KIQQ---YPIVLVGHD-FWDGLLGWVRQHLVAEGMVSPDEV-EIIQVVETAAEALAAI 261
>gi|407853546|gb|EKG06488.1| hypothetical protein TCSYLVIO_002403 [Trypanosoma cruzi]
Length = 376
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 23/170 (13%)
Query: 21 LLDCTTWSGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLT 77
LD +G GPG M+A +GA ++ + +G G + E G + Y+
Sbjct: 220 FLDLVITTGGGPGFMEAANRGAASVEGVETMGMGISLPFEKG------LNRYISHGLAFE 273
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
+F RK ++ SC A+ PGG GTLDEMFE+L L Q ++I +LP+
Sbjct: 274 FHYFFTRKFWMMY------SC--RAIFIAPGGFGTLDEMFELLTLRQTKKI-PDLPI--- 321
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
V+ SF++ ++++ E +GTV+K+E+ SL D+ EA+ ++ F+
Sbjct: 322 VLLGSSFWRTVINWEALVE-FGTVSKEEIDSLC-FADTVQEAIEFIMGFF 369
>gi|395491785|ref|ZP_10423364.1| hypothetical protein SPAM26_08132 [Sphingomonas sp. PAMC 26617]
Length = 323
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ + +F+ RK H
Sbjct: 178 SGGGPSIMEAANRGAADVGHESIGLNIVLPHEQ--APN--PYVTPSLSMQFHYFALRKMH 233
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ A PGG GT DE+FE+L LIQ +I P+P L+ + F+
Sbjct: 234 FLLHA---------RALAAFPGGFGTFDELFELLTLIQTGKIA---PIPVLLYGRE-FWN 280
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++++F E+ AKD S++ ++ E + +FY
Sbjct: 281 RVVNFDALVEEGVVSAKD--LSIFTFVETAQEGWDVVQDFY 319
>gi|103486112|ref|YP_615673.1| hypothetical protein Sala_0619 [Sphingopyxis alaskensis RB2256]
gi|98976189|gb|ABF52340.1| conserved hypothetical protein 730 [Sphingopyxis alaskensis RB2256]
Length = 291
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G+ G + + P L + + +F+ RK H
Sbjct: 143 SGGGPSIMEAANRGAADEGRESIGLNIVLPHEQAPNRFVTPSLSFQFH----YFALRKMH 198
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DEMFE+L LIQ +I P+P +V+ F++
Sbjct: 199 FLLRA---------RAVCVFPGGFGTFDEMFELLTLIQTGKIK---PIP-IVLFGKEFWQ 245
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++++F E+ A+D L++ ++ EA + +FY
Sbjct: 246 RVVNFEALVEEGVVSARD--LGLFQFVETADEAWKIIQDFY 284
>gi|307721276|ref|YP_003892416.1| hypothetical protein Saut_1357 [Sulfurimonas autotrophica DSM
16294]
gi|306979369|gb|ADN09404.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
16294]
Length = 302
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 23 DC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRF 80
DC T +G GPG+M+A +GA G G + ++ +PY+ + R+
Sbjct: 145 DCRVTIMTGGGPGIMEAANRGAYDVGAKSIGLNIKLPHEQYP----NPYITPDLCFLFRY 200
Query: 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140
F+ RK ++ A A+V PGG GT DE+FE L LIQ R ++PV V+
Sbjct: 201 FAIRKLHFLNRA--------KALVIYPGGFGTFDELFETLTLIQT-RKTQKIPV---VLI 248
Query: 141 YDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
S++ K +DF +D G +A ++ ++ D+ EA ++
Sbjct: 249 GKSYWDKAIDF-EFLKDEGVIAPQDL-NITIFADNADEAWKHI 289
>gi|404254782|ref|ZP_10958750.1| hypothetical protein SPAM266_16221 [Sphingomonas sp. PAMC 26621]
Length = 323
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ + +F+ RK H
Sbjct: 178 SGGGPSIMEAANRGAADVGHESIGLNIVLPHEQ--APN--PYVTPSLSMQFHYFALRKMH 233
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ A PGG GT DE+FE+L LIQ +I P+P L+ + F+
Sbjct: 234 FLLHA---------RALAAFPGGFGTFDELFELLTLIQTGKIA---PIPVLLYGRE-FWN 280
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++++F E+ AKD S++ ++ E + +FY
Sbjct: 281 RVVNFDALVEEGVVSAKD--LSIFTFVETAQEGWDVVQDFY 319
>gi|269926660|ref|YP_003323283.1| hypothetical protein Tter_1555 [Thermobaculum terrenum ATCC
BAA-798]
gi|269790320|gb|ACZ42461.1| conserved hypothetical protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 273
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 12 FELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+++ ++AR L +S G GPG+M+A +GA + G P G + + T +P
Sbjct: 89 YQMARDVARRLSSEGFSIITGGGPGIMEAANRGAQEGGSPSIGLNIELPFEQGT----NP 144
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ + + +F RK + + A V PGG GTLDE+FE L LIQ +I
Sbjct: 145 YIDIS--INFHYFFVRKMMFVKYS--------EAFVVFPGGFGTLDELFEALTLIQTGKI 194
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+ P +++N +++ L+++L + E L +I D+ + + + E
Sbjct: 195 QN---FPLVLVN-SRYWQGLIEWLKEPMLAEGKISPEDLDLIRIADTAEDVVQIINE 247
>gi|374587893|ref|ZP_09660983.1| Conserved hypothetical protein CHP00730 [Leptonema illini DSM
21528]
gi|373872581|gb|EHQ04577.1| Conserved hypothetical protein CHP00730 [Leptonema illini DSM
21528]
Length = 269
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
R+L CT G GPG+M+A +GA AG G + + P+L + +
Sbjct: 118 RVLVCT---GGGPGIMEASNRGAKDAGGDSIGLNIELPREQLPNPYISPHLNFDFH---- 170
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK+ + A +++ PGG GTLDE+FE L L+Q + + +++PV ++
Sbjct: 171 YFFTRKYWFLYYA--------RLLISFPGGFGTLDELFETLTLMQTKNLKNDVPV---LL 219
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
F+ +++DF E G +A ++ L+ I D EA+ ++
Sbjct: 220 YGREFWNRVVDFEYLVES-GLIAAGDL-KLFTIVDGVDEAMEHI 261
>gi|62258040|gb|AAX77762.1| unknown protein [synthetic construct]
Length = 272
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 108 TGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ------RPNQYQDIFLIYRYFFTRKAM 161
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ D F+
Sbjct: 162 FIKHSM--------SYIVMPGGFGTLDELFDITTLIQ---TGKKVKIPIILYGKD-FWGG 209
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
L++++ V +E +L + DS E + +AE Y +++ + H
Sbjct: 210 LMEWIKTTLVGKGVISEEEVNLLTLVDSIDETIEIIAEHY-MNTYSSKAH 258
>gi|83941895|ref|ZP_00954357.1| decarboxylase family protein [Sulfitobacter sp. EE-36]
gi|83847715|gb|EAP85590.1| decarboxylase family protein [Sulfitobacter sp. EE-36]
Length = 283
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 24/188 (12%)
Query: 9 LQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
L+S E G+ D +G GPG+M+A +GA+ AG G +G +
Sbjct: 115 LKSMESDGQ-----DNVIVTGGGPGVMEAGNRGAVDAG----GQSIGLNIVLPFEQAPNE 165
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ E +F+ RK + A A+ PGG GTLDEMFE L LIQ R+
Sbjct: 166 YVTPELCFNFHYFAIRKMHFLMRA--------RAICVFPGGFGTLDEMFETLTLIQTGRM 217
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
VPFL+ +F++K++++ D GT++ D+ L++ ++ EA+ L E +D
Sbjct: 218 SR---VPFLLFGR-AFWEKIINWDA-LADAGTIS-DQDLDLFQFVETADEAMK-LIENWD 270
Query: 189 LSSIDKRV 196
+ + V
Sbjct: 271 TAPAREEV 278
>gi|119900053|ref|YP_935266.1| hypothetical protein azo3764 [Azoarcus sp. BH72]
gi|119672466|emb|CAL96380.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 298
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 18/152 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA +AG G + E A N PY+ E +F+ RK
Sbjct: 142 TGGGPGIMEAGNRGAFEAGGRSMGMNIYLPFEE--APN--PYITPELCFQFHYFAIRKMH 197
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ AV A+V+ PGG GTLDE+FE L L Q +I P ++ +F+++
Sbjct: 198 FLMRAV--------ALVSFPGGFGTLDELFEALTLTQTRKIRRR---PIILFG-RAFWER 245
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+DF ED G ++ +V L++ ++ EA
Sbjct: 246 LIDFNVLIED-GLISPGDV-ELFQYVETAEEA 275
>gi|118497814|ref|YP_898864.1| hypothetical protein FTN_1229 [Francisella novicida U112]
gi|194323786|ref|ZP_03057562.1| conserved hypothetical protein [Francisella novicida FTE]
gi|208779877|ref|ZP_03247221.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254373170|ref|ZP_04988659.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374624|ref|ZP_04990105.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|385793201|ref|YP_005826177.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|118423720|gb|ABK90110.1| conserved protein of unknown function [Francisella novicida U112]
gi|151570897|gb|EDN36551.1| conserved hypothetical protein [Francisella novicida GA99-3549]
gi|151572343|gb|EDN37997.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|194322150|gb|EDX19632.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|208744332|gb|EDZ90632.1| conserved hypothetical protein [Francisella novicida FTG]
gi|332678526|gb|AEE87655.1| hypothetical protein FNFX1_1269 [Francisella cf. novicida Fx1]
Length = 237
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 35/178 (19%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 82 TGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ------RPNQYQDIFLIYRYFFTRKAM 135
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ Y K
Sbjct: 136 FIKHSM--------SYIVMPGGFGTLDELFDITTLIQ---TGKKVKMPIIL------YGK 178
Query: 148 LLDFLGDCEDW--------GTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
DF G +W G ++K+EV +L + DS E + +AE Y +++ + H
Sbjct: 179 --DFWGGLMEWIKTTLVGKGVISKEEV-NLLTLVDSIDETIEIIAEHY-MNTYSSKAH 232
>gi|456063478|ref|YP_007502448.1| hypothetical protein D521_1145 [beta proteobacterium CB]
gi|455440775|gb|AGG33713.1| hypothetical protein D521_1145 [beta proteobacterium CB]
Length = 285
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA +AG GF + + +PYL +F+ RK
Sbjct: 141 TGGGPGIMEAANRGAFEAGDRTIGFNISLPREQHP----NPYLTPGLSFRFHYFAIRKMH 196
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A ++VA PGG G+ DE+FE+L L+Q +++ P+ ++ SF+++
Sbjct: 197 FMLRA--------RSIVAYPGGFGSFDELFEVLTLMQTKKV-ERFPI---ILVGKSFWQE 244
Query: 148 LLDFLGDCEDWGTVAKDEV-ASLWKICDSNSEALSYLAEFYDLS 190
+++F E G + D+V L ++ EA + + ++Y L+
Sbjct: 245 VINFKQMLEH-GVI--DQVDMQLIHFVETAEEAWAIIRDWYQLA 285
>gi|83310308|ref|YP_420572.1| Rossmann fold nucleotide-binding protein [Magnetospirillum
magneticum AMB-1]
gi|82945149|dbj|BAE50013.1| Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magneticum AMB-1]
Length = 314
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +GG +G + Y+ + +F+
Sbjct: 164 DFVVKTGGGPGIMEAANRGA----DDIGGKSIGLNIVLPMEQEPNSYITPDLCFRFHYFA 219
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + + A+V PGG GTLDE+FE LIQ +I P+P L+ +
Sbjct: 220 IRKMHFLTRS--------KALVVFPGGFGTLDELFEAATLIQTGKIE---PIPILLFGRE 268
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++++++ + G VA ++ S++ ++ EA +Y+A+FY L
Sbjct: 269 -YWERVINIDAMINE-GMVAPED-KSIFTFVETAEEAWNYIADFYRL 312
>gi|83855372|ref|ZP_00948902.1| decarboxylase family protein [Sulfitobacter sp. NAS-14.1]
gi|83843215|gb|EAP82382.1| decarboxylase family protein [Sulfitobacter sp. NAS-14.1]
Length = 283
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 24/188 (12%)
Query: 9 LQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
L+S E G+ D +G GPG+M+A +GA+ AG G +G +
Sbjct: 115 LKSMESDGQ-----DNVIVTGGGPGVMEAGNRGAVDAG----GQSIGLNIVLPFEQAPNE 165
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ E +F+ RK + A A+ PGG GTLDEMFE L LIQ R+
Sbjct: 166 YVTPELCFNFHYFAIRKMHFLMRA--------RAICVFPGGFGTLDEMFETLTLIQTGRM 217
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
VPFL+ +F++K++++ D GT++ D+ L++ ++ EA+ L E +D
Sbjct: 218 SR---VPFLLFGR-AFWEKIINWDA-LADAGTIS-DQDLDLFQFVETADEAMR-LIENWD 270
Query: 189 LSSIDKRV 196
+ + V
Sbjct: 271 TAPAREEV 278
>gi|119899890|ref|YP_935103.1| hypothetical protein azo3601 [Azoarcus sp. BH72]
gi|119672303|emb|CAL96217.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 240
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y+ L +IAR L + SG GPG+M+A KGA P G +
Sbjct: 57 PDHMYYM----LTEQIARQLSDAGFSVISGGGPGIMEAANKGAFFGKSPSVGLNIQLPME 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY + T + F ARK + A A V +PGG GTLDE+ E
Sbjct: 113 QQA----NPYQDISQ--TFQHFFARKFMFVKFA--------AAYVVMPGGFGTLDELLEA 158
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
+ LIQ G +P +++ + F++ LLD+ D + + L ++ D +
Sbjct: 159 MTLIQ---TGKSRRIP-VILVHGPFWQGLLDWFRDRLVAERMIHPDDLDLVQVIDKPEDV 214
Query: 180 LSYLAEFYD 188
+ + + Y+
Sbjct: 215 VEAIFKHYE 223
>gi|186473236|ref|YP_001860578.1| hypothetical protein Bphy_4418 [Burkholderia phymatum STM815]
gi|184195568|gb|ACC73532.1| conserved hypothetical protein [Burkholderia phymatum STM815]
Length = 247
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L IAR L SG GPG+M+A KGA P G +
Sbjct: 59 LKPNSPYY----KLATTIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 114
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 115 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 156
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F+K LL F G + D++ +L ++
Sbjct: 157 DELAEVLTLIQTKKSRH---VPIILVGAE-FWKGLLAWFESQLVPMGLINPDDM-NLMQV 211
Query: 173 CDSNSEALSYLAEFYD 188
D + L + FY+
Sbjct: 212 IDDPDQVLEAVLAFYE 227
>gi|424842163|ref|ZP_18266788.1| TIGR00730 family protein [Saprospira grandis DSM 2844]
gi|395320361|gb|EJF53282.1| TIGR00730 family protein [Saprospira grandis DSM 2844]
Length = 237
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 32/193 (16%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK--E 57
PD+P+Y +L EIA+L+ +G GPG+M+A GA QAG P G + E
Sbjct: 57 PDNPYY----KLATEIAKLMVDEGYGIITGGGPGIMEAANLGAKQAGGPSVGLNIDLPFE 112
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
G + Y+ + ++F RK + A A+V LPGG GT+DE+F
Sbjct: 113 QGH------NDYIDNDKIFNFKYFFIRKVMFVKYA--------QALVVLPGGFGTMDELF 158
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC---EDWGTVAKDEVASLWKICD 174
E+L L+Q ++ PVP +++ + F+ L D++ + ++ KD L I D
Sbjct: 159 EVLTLVQTQKSS---PVPIILVGSE-FWTGLKDWIKNVMLEQEHNVSPKD--LDLMPITD 212
Query: 175 SNSEALSYLAEFY 187
E + + EFY
Sbjct: 213 DPQEVVRIINEFY 225
>gi|302558587|ref|ZP_07310929.1| lysine decarboxylase [Streptomyces griseoflavus Tu4000]
gi|302476205|gb|EFL39298.1| lysine decarboxylase [Streptomyces griseoflavus Tu4000]
Length = 252
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA++A G VG G ++ E G
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGALEAQGMSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ + P+ +Y + L+D+L A D+ L+ + D EA++
Sbjct: 189 LVQTQKV-TRFPIVLFGTDY---WGGLVDWLRHTVIAEGKAADKDLLLFHVTDDVDEAVA 244
Query: 182 YLAE 185
+++
Sbjct: 245 LVSK 248
>gi|114763587|ref|ZP_01442992.1| decarboxylase family protein [Pelagibaca bermudensis HTCC2601]
gi|114543867|gb|EAU46879.1| decarboxylase family protein [Roseovarius sp. HTCC2601]
Length = 280
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA +AG G +G + Y+ + +F+ RK
Sbjct: 128 TGGGPGVMEAGNLGAQEAG----GVSIGLNIVLPHEQAPNEYVTPDLCFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ +F++K
Sbjct: 184 FLMRA--------RAICVFPGGFGTLDEMFEALTLIQTGRMER---VPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
++++ ED GT++ +++ L++ +S EA + + E
Sbjct: 232 IINWEA-LEDAGTISPEDL-DLFRFVESADEAAAIIEE 267
>gi|86139442|ref|ZP_01058011.1| decarboxylase family protein [Roseobacter sp. MED193]
gi|85823945|gb|EAQ44151.1| decarboxylase family protein [Roseobacter sp. MED193]
Length = 282
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 20/153 (13%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GAM AG G VG + Y+ E +F+ RK H
Sbjct: 128 TGGGPGVMEAGNRGAMDAG----GKSVGLSIVLPHEQAPNGYVTPELSFNFHYFAIRKMH 183
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A A+ PGG GTLDE+FE L LIQ R+ VPF++ +F++
Sbjct: 184 FLMRAA---------AITVFPGGFGTLDELFESLTLIQTGRMER---VPFILFGR-AFWE 230
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
K++++ D GT++ D+ L+K ++ EA
Sbjct: 231 KIINWEA-LADAGTIS-DQDLELFKFVETAEEA 261
>gi|291278988|ref|YP_003495823.1| hypothetical protein DEFDS_0585 [Deferribacter desulfuricans SSM1]
gi|290753690|dbj|BAI80067.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 226
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
H Y ++ ELG +A T +G GPG+M+A +GA +AG G +G
Sbjct: 60 HRDYRKARELGNLLADE-GITVITGGGPGIMEAANRGAAEAG----GRSIGINIELPFEQ 114
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+PY +T +F RK L+ A +A V PGG GT+DE FE L LIQ
Sbjct: 115 KPNPYA--NKVITFNYFFVRKVMLVKYA--------SAFVIFPGGFGTMDEFFEALTLIQ 164
Query: 125 LERIGSELPVPFLVMN 140
+I LP P ++++
Sbjct: 165 TRKI---LPFPLILVD 177
>gi|254876793|ref|ZP_05249503.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842814|gb|EET21228.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 237
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 22/198 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ D +Y + EL ++ +G GPG+M+A KGA Q G + +
Sbjct: 56 ISEDDKYYKDTVELAKSLSNH-GFAVITGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ 114
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
P + +L R+F RK I ++ + + +PGG GTLDE+F+I
Sbjct: 115 ------KPNSYQDVFLIYRYFFTRKAMFIKHSM--------SYIVMPGGFGTLDELFDIT 160
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
LIQ G ++ +P ++ D F+ L+ ++ G V+K+EV +L + DS E
Sbjct: 161 TLIQ---TGKKVKMPIILYGKD-FWGGLMAWIKTTLVQKGVVSKEEV-NLLTLVDSIDEV 215
Query: 180 LSYLAEFYDLSSIDKRVH 197
L +AE Y +++ + H
Sbjct: 216 LEIVAEHY-MNTYSSKAH 232
>gi|406899789|gb|EKD42968.1| hypothetical protein ACD_72C00517G0002 [uncultured bacterium]
Length = 457
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P + HY +++ E+ LL TT +G GPG+M+A +GA +A G VG
Sbjct: 74 PSNTHY---YKVAQELGFLLGKNGFTTITGGGPGIMEAANRGAFEA----NGNTVGINIQ 126
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+PY ++ + +F +RK L A A V PGG GTLDE FE+
Sbjct: 127 LPFEQRINPY--VKESVGFFYFFSRKVMLTSPA--------NAFVFFPGGFGTLDEFFEV 176
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSE 178
+ ++L G VP +++ D F+ L+ FL + + + W I D+ +
Sbjct: 177 VDYMEL---GHMQNVPVVLVGKD-FWGPLVKFLRKNSSGIAHSVPESIIDQWHIVDTADD 232
Query: 179 ALSYLAEFYDLSS 191
A Y+ + DL++
Sbjct: 233 AFKYIKDAPDLAN 245
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 27/185 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P +Y ++E+G +A+ TT +G GPG+M+A KGA +AG G + E E
Sbjct: 295 PGSSYYNAAYEVGKMLAQN-GFTTITGGGPGVMEAANKGAFEAGGESVGINMRTEKSER- 352
Query: 63 ASNFHPYLPLETYLTCR--FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ YLT FF LI A A + PGG GTL ++FE+L
Sbjct: 353 ---------VNNYLTTSTGFFFPFVRKLIITA------PSKAFIFFPGGFGTLHQLFELL 397
Query: 121 ALIQLERIGSELP-VPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSE 178
L + ++ +P +P +++ D F++ LLD+ +D+ T+ + L + DS E
Sbjct: 398 TLQETKK----MPLIPTILVGRD-FWQPLLDYFHILYQDFKTIGMSD-RDLVIVVDSADE 451
Query: 179 ALSYL 183
L Y+
Sbjct: 452 ILKYI 456
>gi|163744980|ref|ZP_02152340.1| hypothetical protein OIHEL45_05315 [Oceanibulbus indolifex HEL-45]
gi|161381798|gb|EDQ06207.1| hypothetical protein OIHEL45_05315 [Oceanibulbus indolifex HEL-45]
Length = 287
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 23/174 (13%)
Query: 10 QSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
+S E GG ++ +G GPG+M+A +GA+ AG G +G + Y
Sbjct: 115 KSMETGG-----VENVIVTGGGPGVMEAGNRGALDAG----GHSIGLNIVLPFEQAPNEY 165
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ E +F+ RK + A A+ PGG GT+DE+FE L LIQ R+
Sbjct: 166 VTPELCFNFHYFAIRKMHFLMRA--------RAICVFPGGFGTMDELFEALTLIQTGRMN 217
Query: 130 SELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
VPFL+ + F++K++++ D GT++ +++ L++ +S EA+ +
Sbjct: 218 R---VPFLLFGRE-FWEKIINWDA-LADAGTISAEDL-DLFRFVESADEAMEVI 265
>gi|419967342|ref|ZP_14483246.1| hypothetical protein WSS_A34477 [Rhodococcus opacus M213]
gi|414567292|gb|EKT78081.1| hypothetical protein WSS_A34477 [Rhodococcus opacus M213]
Length = 265
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
HP Y LG +A +G GPG+M+A +GA ++G G+ +G
Sbjct: 87 HPEYEAGRALGARLAEA-GYAVMTGGGPGVMEAANRGASESG----GYSIG--------- 132
Query: 65 NFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
LP E L R+F ARK + + A + LPGG GTLDE+
Sbjct: 133 -LGIELPFEEGLNEWVDLGINFRYFFARKTMFVKYS--------QAFICLPGGFGTLDEL 183
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDS 175
FE L L+Q ++ + P+ V+ ++ L+D+L G + G +++ +V SL + D
Sbjct: 184 FEALTLVQTRKV-TRFPI---VLFGTEYWSGLVDWLRGTLQRSGKISEGDV-SLLHVTDD 238
Query: 176 NSEALSYL 183
EA+ +
Sbjct: 239 VEEAVQIV 246
>gi|443624437|ref|ZP_21108908.1| putative Lysine decarboxylase [Streptomyces viridochromogenes
Tue57]
gi|443342051|gb|ELS56222.1| putative Lysine decarboxylase [Streptomyces viridochromogenes
Tue57]
Length = 225
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y LG + +G GPG M+A KGA +AG G VG
Sbjct: 59 DSPEYDAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGACEAG----GISVGLGIELPFE 113
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L L+
Sbjct: 114 QGLNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALTLV 163
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ + P+ V+ +++ L+D+L + A ++ L+ + D EA++ +
Sbjct: 164 QTQKV-TRFPI---VLFGSAYWGGLVDWLRNTLVAQGKASEKDLLLFHVTDDVDEAVALV 219
Query: 184 AE 185
++
Sbjct: 220 SK 221
>gi|297192263|ref|ZP_06909661.1| lysine decarboxylase [Streptomyces pristinaespiralis ATCC 25486]
gi|197719756|gb|EDY63664.1| lysine decarboxylase [Streptomyces pristinaespiralis ATCC 25486]
Length = 249
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 23/182 (12%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTA 63
P Y ELG +A+ +G GPG+M+A KGA +A G VG G ++ E G
Sbjct: 85 PEYEVGVELGRALAKA-GFAVITGGGPGVMEAANKGASEAKGISVGLGIELPFEQG---- 139
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ + + R+F RK + A V LPGG+GTLDE+FE L L+
Sbjct: 140 --INPHV--DIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELFEALTLV 187
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++ + P+ +Y + L+D+L D A ++ L+ + D EA++ +
Sbjct: 188 QTRKV-TRFPIVLFGTDY---WSGLVDWLRDTVIAQGKASEKDLLLFHVTDDVEEAVAMV 243
Query: 184 AE 185
++
Sbjct: 244 SK 245
>gi|424783353|ref|ZP_18210192.1| hypothetical protein CSUNSWCD_903 [Campylobacter showae CSUNSWCD]
gi|421958761|gb|EKU10375.1| hypothetical protein CSUNSWCD_903 [Campylobacter showae CSUNSWCD]
Length = 198
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 72/156 (46%), Gaps = 36/156 (23%)
Query: 28 SGAGPGLMDAVTKGAMQAGK-PVGGFKVGKEAGEWTASNFHPYLPLET----YLTCRF-- 80
SG GPG+M+A KGA ++GK P G V LP E Y T F
Sbjct: 56 SGGGPGVMEAANKGAYESGKSPSIGLNV--------------VLPFEQVTNKYATSNFVF 101
Query: 81 --FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLV 138
SARK LI+ + +A + PGG GTLDE+FEIL L Q IG++ FL+
Sbjct: 102 SNLSARKFALIERS--------SAFLVFPGGFGTLDELFEILVLAQ---IGAKKAKIFLI 150
Query: 139 MNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
+ F+ KL DF+ +E L+ I D
Sbjct: 151 GS--EFWSKLDDFIKTTLIREKAVSEEDLLLYTISD 184
>gi|260429890|ref|ZP_05783865.1| decarboxylase family protein [Citreicella sp. SE45]
gi|260418813|gb|EEX12068.1| decarboxylase family protein [Citreicella sp. SE45]
Length = 326
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 21/145 (14%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA++AG G + + +PY+ + R+F+ RK H
Sbjct: 165 TGGGPGIMEAANRGAVEAGARTVGLNITLPHEQLP----NPYVTPDLCFRFRYFALRKLH 220
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+V PGG GT DE+FE L LIQ +I PVP +++ D + +
Sbjct: 221 FLLRA---------RALVVFPGGFGTFDELFETLTLIQTRKIQ---PVPVILVGRDYWAR 268
Query: 147 KL-LDFLGDCEDWGTVAKDEVASLW 170
DFL + G + ++ A W
Sbjct: 269 AFDADFL---VEEGVIDPEDRALFW 290
>gi|227545999|ref|ZP_03976048.1| possible Rossmann fold nucleotide-binding protein [Bifidobacterium
longum subsp. longum ATCC 55813]
gi|227213633|gb|EEI81482.1| possible Rossmann fold nucleotide-binding protein [Bifidobacterium
longum subsp. infantis ATCC 55813]
Length = 313
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 151 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW-- 207
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK I + + V+ PGG GTLDEMFE+L L+
Sbjct: 208 --------VNLGMSFRYFFVRKTMFIKYS--------SGVIVCPGGFGTLDEMFELLTLV 251
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 252 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISTID-PKLVTVTDDADEAV 304
>gi|156097973|ref|XP_001615019.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148803893|gb|EDL45292.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 368
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 25/160 (15%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWTASNFHPYLPLETYLTCRFFSA 83
+G GPG M+A KG+ +A GF V K A ++ N +F
Sbjct: 216 TGGGPGFMEAANKGSREANGRSLGFMVSLPFEKGANQYVDQNLS--------FKFHYFFT 267
Query: 84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
RK L+ ++ A + LPGG GTLDE+ EIL L Q ++ +P+ ++
Sbjct: 268 RKFWLVYLSL--------AFIILPGGFGTLDELMEILTLKQCKKFKRNVPI---ILFGKD 316
Query: 144 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
F+ +L+F D+G ++++++ S++ + D EA +Y+
Sbjct: 317 FWSSILNF-KKLADYGLISQEDLDSIF-LTDCIEEAYNYV 354
>gi|395764936|ref|ZP_10445556.1| TIGR00730 family protein [Bartonella sp. DB5-6]
gi|395413753|gb|EJF80215.1| TIGR00730 family protein [Bartonella sp. DB5-6]
Length = 287
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 33/194 (17%)
Query: 7 HYLQSFELGGEIARLLDC----------TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK 56
HY ++ E ARL C +G GPG+M+A +GA G P G V
Sbjct: 115 HY---YDEAREFARLCSCYSATTQYREFVVITGGGPGVMEAGNRGAADVGAPTVGLNVVL 171
Query: 57 EAGEWTASNFHPYLPLE-TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+ S P+L YL R + H L+ A+ PGG GTLDE
Sbjct: 172 PHEQMPNSYVTPHLCFNFHYLGMR----KMHFLMRAK---------ALAIFPGGFGTLDE 218
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L L+Q R+ VP L+ + F+ +++F GT++ D++ +L ++
Sbjct: 219 LFETLTLMQTGRMKQ---VPILMFGKE-FWNNVINF-DYLSAQGTISPDDL-TLMTFVNT 272
Query: 176 NSEALSYLAEFYDL 189
+EA + FY L
Sbjct: 273 AAEAFEEIRSFYKL 286
>gi|23336270|ref|ZP_00121494.1| COG1611: Predicted Rossmann fold nucleotide-binding protein
[Bifidobacterium longum DJO10A]
gi|189439545|ref|YP_001954626.1| DNA uptake protein [Bifidobacterium longum DJO10A]
gi|239621945|ref|ZP_04664976.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|312132954|ref|YP_004000293.1| DNA uptake protein [Bifidobacterium longum subsp. longum BBMN68]
gi|322688894|ref|YP_004208628.1| hypothetical protein BLIF_0707 [Bifidobacterium longum subsp.
infantis 157F]
gi|384201754|ref|YP_005587501.1| hypothetical protein BLNIAS_01771 [Bifidobacterium longum subsp.
longum KACC 91563]
gi|419849770|ref|ZP_14372797.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum 35B]
gi|419853113|ref|ZP_14375951.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum
2-2B]
gi|189427980|gb|ACD98128.1| Putative DNA uptake protein [Bifidobacterium longum DJO10A]
gi|239515136|gb|EEQ55003.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291517061|emb|CBK70677.1| conserved hypothetical protein, DprA/Smf-related, family 2
[Bifidobacterium longum subsp. longum F8]
gi|311773935|gb|ADQ03423.1| Putative DNA uptake protein [Bifidobacterium longum subsp. longum
BBMN68]
gi|320460230|dbj|BAJ70850.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
gi|338754761|gb|AEI97750.1| hypothetical protein BLNIAS_01771 [Bifidobacterium longum subsp.
longum KACC 91563]
gi|386408891|gb|EIJ23778.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum
2-2B]
gi|386411123|gb|EIJ25879.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum 35B]
Length = 313
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 151 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW-- 207
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK I + + V+ PGG GTLDEMFE+L L+
Sbjct: 208 --------VNLGMSFRYFFVRKTMFIKYS--------SGVIVCPGGFGTLDEMFELLTLV 251
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 252 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISTID-PKLVTVTDDADEAV 304
>gi|254438396|ref|ZP_05051890.1| conserved hypothetical protein TIGR00730, putative [Octadecabacter
antarcticus 307]
gi|198253842|gb|EDY78156.1| conserved hypothetical protein TIGR00730, putative [Octadecabacter
antarcticus 307]
Length = 296
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G +G + Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGALDAG----GRSIGLNIVLPHEQAPNEYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ VPFL+ +F++
Sbjct: 199 FLMRA--------KAITVFPGGFGTLDETFEALTLIQTGRMER---VPFLLFGR-AFWES 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ E GT+++D++A L+K ++ EA+ L
Sbjct: 247 IINWDALSES-GTISQDDLA-LFKFVETAEEAVDAL 280
>gi|23465514|ref|NP_696117.1| hypothetical protein BL0941 [Bifidobacterium longum NCC2705]
gi|23326173|gb|AAN24753.1| hypothetical protein BL0941 [Bifidobacterium longum NCC2705]
Length = 313
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 151 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW-- 207
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK I + + V+ PGG GTLDEMFE+L L+
Sbjct: 208 --------VNLGMSFRYFFVRKTMFIKYS--------SGVIVCPGGFGTLDEMFELLTLV 251
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 252 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISTID-PKLVTVTDDADEAV 304
>gi|21223509|ref|NP_629288.1| hypothetical protein SCO5140 [Streptomyces coelicolor A3(2)]
gi|289769280|ref|ZP_06528658.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|9714425|emb|CAC01341.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289699479|gb|EFD66908.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 252
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA++A G VG G ++ E G
Sbjct: 86 DSPEYDAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGALEAKGTSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +++ + P+ V+ ++ L+D+L G G A+ ++ L+ + D EA+
Sbjct: 189 LVQTQKV-TRFPI---VLFGSEYWGGLVDWLRGTLVAQGKAAEKDLM-LFHVTDDVDEAV 243
Query: 181 SYLAE 185
+ +++
Sbjct: 244 ALVSK 248
>gi|320108502|ref|YP_004184092.1| hypothetical protein AciPR4_3344 [Terriglobus saanensis SP1PR4]
gi|319927023|gb|ADV84098.1| Conserved hypothetical protein CHP00730 [Terriglobus saanensis
SP1PR4]
Length = 309
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A +GA +AG G + + +PY+ +F RK
Sbjct: 130 SGGGPGIMEAANRGAYEAGGKTIGLNIKLPFEQRP----NPYITPALNFEFHYFFMRKFW 185
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A A+V PGG GTLDEMFE+L L Q ++ ++ ++ Y S Y K
Sbjct: 186 FAYLA--------KALVVFPGGFGTLDEMFELLTLAQTHKLAKKM----TIVIYGSEYWK 233
Query: 148 LLDFLGDCEDWGTVA-KDEVASLWKICDSNSEALSYLAE 185
+ L D G +A KD+ L++ D+ +A L E
Sbjct: 234 SVINLDALADKGAIAVKDK--ELFRFADTPEDAFRMLRE 270
>gi|94310209|ref|YP_583419.1| hypothetical protein Rmet_1265 [Cupriavidus metallidurans CH34]
gi|93354061|gb|ABF08150.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
Length = 288
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 26/188 (13%)
Query: 7 HYLQSFELGGEI-ARL-----LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
HY Q+ G I AR D +G GPG+M+A +GA + G G +
Sbjct: 110 HYEQARRFSGLISARFQQQNRRDFVVVTGGGPGIMEAANRGAFEVGARSIGLNI--TLPH 167
Query: 61 WTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
A N PY+ + +F+ RK H L+ +VA PGG TLDE+FE+
Sbjct: 168 EQAPN--PYMCPDLAFRFHYFALRKMHFLLHA---------KGLVAFPGGYRTLDELFEV 216
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ ++ +PV V+ +F+ +++DF D G V+ ++ L+ D E
Sbjct: 217 LTLIQTGKM-QRIPV---VLVGRAFWHRVVDF-DLLLDEGYVSPSDL-DLFTCVDKAEEI 270
Query: 180 LSYLAEFY 187
+S L FY
Sbjct: 271 VSALERFY 278
>gi|86742520|ref|YP_482920.1| hypothetical protein Francci3_3841 [Frankia sp. CcI3]
gi|86569382|gb|ABD13191.1| conserved hypothetical protein 730 [Frankia sp. CcI3]
Length = 258
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 19/183 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P Y Q LG +A +G GPG M+AV +GA +AG G VG
Sbjct: 81 PDSPFYGQGRLLGAALAEA-GFAVITGGGPGAMEAVNRGAQEAG----GLSVGLGIELPY 135
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ ++ L ++ R+F RK + A A V LPGG GTLDE+FE L L
Sbjct: 136 EQRLNDWVDLG--VSFRYFFVRKTMFVKYA--------EAFVILPGGFGTLDELFEALTL 185
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q ++ + PV V+ ++ L+D++ + ++ + I D EA+
Sbjct: 186 VQTGKV-TRFPV---VLIGSEYWSGLVDWMRTTLLPAGLVQERDLQILSITDDIHEAVRI 241
Query: 183 LAE 185
+ E
Sbjct: 242 ILE 244
>gi|389695887|ref|ZP_10183529.1| putative Rossmann fold nucleotide-binding protein [Microvirga sp.
WSM3557]
gi|388584693|gb|EIM24988.1| putative Rossmann fold nucleotide-binding protein [Microvirga sp.
WSM3557]
Length = 262
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 28/135 (20%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWTASNFHPYLPLETYLTC 78
D +G GPG+M+A +GA AG P GF + +E ++ + LT
Sbjct: 102 DNVIATGGGPGIMEAANRGAFDAGAPSIGFNITLPHEQEPNAYSTPD----------LTF 151
Query: 79 RF--FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
RF F+ RK + A+R + A+V PGG GTLDE+FE+L L Q G P+P
Sbjct: 152 RFHYFAMRK---MHLAMRAN-----ALVVFPGGFGTLDELFELLTLRQ---TGKAPPLPI 200
Query: 137 LVMNYDSFYKKLLDF 151
++ ++D +++ ++ F
Sbjct: 201 VLFDHD-YWQSVIKF 214
>gi|381151814|ref|ZP_09863683.1| putative Rossmann fold nucleotide-binding protein [Methylomicrobium
album BG8]
gi|380883786|gb|EIC29663.1| putative Rossmann fold nucleotide-binding protein [Methylomicrobium
album BG8]
Length = 315
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 24/170 (14%)
Query: 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSA 83
C +G GPGLM+A +GA +G G + ++ +PY+ E +F+
Sbjct: 162 CVVMTGGGPGLMEAANRGAYDSGALTVGLNINLPYEQFP----NPYITPELCFRFHYFAM 217
Query: 84 RK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK H L+ A+V PGG GT DE+FE L L+Q +I + PV V+ +
Sbjct: 218 RKLHFLLRA---------KALVVFPGGYGTFDELFETLTLMQTRKI-KQAPV---VLVGE 264
Query: 143 SFYKKL--LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
SF+K+ +DFL CE G + ++ W ++ E + ++Y+++
Sbjct: 265 SFWKEAFNVDFL-ICE--GVIDPEDRELFW-YAETAEEIWQSILDWYNVN 310
>gi|322690869|ref|YP_004220439.1| hypothetical protein BLLJ_0679 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320455725|dbj|BAJ66347.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 313
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 151 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW-- 207
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK I + + V+ PGG GTLDEMFE+L L+
Sbjct: 208 --------VNLGMSFRYFFVRKTMFIKYS--------SGVIVCPGGFGTLDEMFELLTLV 251
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 252 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISTID-PKLVTVTDDADEAV 304
>gi|345868398|ref|ZP_08820386.1| putative lysine decarboxylase family protein [Bizionia
argentinensis JUB59]
gi|344047158|gb|EGV42794.1| putative lysine decarboxylase family protein [Bizionia
argentinensis JUB59]
Length = 229
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 20/192 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDH +Y + E+ +I +G GPG+M+A KGA AG G VG
Sbjct: 52 PDHKNYKLAEEIASKIVEH-GYGVITGGGPGIMEAGNKGAHIAG----GTSVGLNIDLPF 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 107 EQHDNPYIDSDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITL 158
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +I + P+ ++ F+ L+D++ + + ++ +++ L + D+ E +
Sbjct: 159 IQTNKI-EKFPI---ILVGTEFWSGLIDWIRTTLLDGFENISANDL-DLIHLVDTADEVI 213
Query: 181 SYLAEFYDLSSI 192
L FY S++
Sbjct: 214 PILDSFYKNSNL 225
>gi|319407939|emb|CBI81593.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 280
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE-TYLTCRFFSARKH 86
+G GPG+M+A +GA G P G V +W P+L YLT R + H
Sbjct: 136 TGGGPGVMEAGNRGADDVGAPTVGLNVFLPHEQWPNIYVTPHLCFNFHYLTIR----KMH 191
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
LI A+ PGG GTLDE+FE L L+Q R+ +P L+ + F+
Sbjct: 192 FLIRAK---------ALAIFPGGFGTLDELFEALTLMQTGRMKK---IPILIFGKE-FWN 238
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++F G ++ +V L+ ++ +A + FY L
Sbjct: 239 NVINF-DYLSTQGMISPSDV-DLFTFVNTAEQAFEVIRSFYKL 279
>gi|317482285|ref|ZP_07941306.1| hypothetical protein HMPREF0177_00699 [Bifidobacterium sp.
12_1_47BFAA]
gi|419847035|ref|ZP_14370237.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum
1-6B]
gi|419854798|ref|ZP_14377574.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum 44B]
gi|316916301|gb|EFV37702.1| hypothetical protein HMPREF0177_00699 [Bifidobacterium sp.
12_1_47BFAA]
gi|386412344|gb|EIJ27016.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum
1-6B]
gi|386417075|gb|EIJ31566.1| TIGR00730 family protein [Bifidobacterium longum subsp. longum 44B]
Length = 313
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 151 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW-- 207
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK I + + V+ PGG GTLDEMFE+L L+
Sbjct: 208 --------VNLGMSFRYFFVRKTMFIKYS--------SGVIVCPGGFGTLDEMFELLTLV 251
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 252 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISTID-PKLVTVTDDADEAV 304
>gi|376295089|ref|YP_005166319.1| hypothetical protein DND132_0298 [Desulfovibrio desulfuricans
ND132]
gi|323457650|gb|EGB13515.1| Conserved hypothetical protein CHP00730 [Desulfovibrio
desulfuricans ND132]
Length = 219
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVGGFKVGKEAGEW 61
P P Y ++ +L +++ + +G GPGLM+A KGA + G+ +G
Sbjct: 52 PGEPLYQKTEQLSKALSQA-GFSVITGGGPGLMEAGNKGAFENDGESIG----------- 99
Query: 62 TASNFHPYLPLET----YLTC----RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
H +LP+E +L R+F RK I A+ A VALPGG GTL
Sbjct: 100 ----LHIHLPMEQKSNQFLNIKSEFRYFFIRKLMFIKYAL--------AYVALPGGYGTL 147
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKIC 173
DE+ E L LIQ RI P P ++ + F+ L+D+ + K E L+ +
Sbjct: 148 DELSEALVLIQTHRIK---PFPIVLFGTE-FWAGLIDWFKNQMVPNGFCKAEDLDLFIVT 203
Query: 174 DSNSEALSYL 183
D E + Y+
Sbjct: 204 DDVDEVVGYI 213
>gi|315655712|ref|ZP_07908610.1| methionyl-tRNA formyltransferase [Mobiluncus curtisii ATCC 51333]
gi|315489776|gb|EFU79403.1| methionyl-tRNA formyltransferase [Mobiluncus curtisii ATCC 51333]
Length = 269
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 27/178 (15%)
Query: 12 FELGGEIARLLDCTTWS---GAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAGEWTASNF 66
++LG EI ++ +S G GPGLM+AV+KGA G +G G ++ E G
Sbjct: 105 YQLGEEIGKVFAEAGFSIITGGGPGLMEAVSKGAHTHDGSTIGLGIELPHEQG------I 158
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+ Y+ L + R+F RK + A A VALPGG GTLDE+FE + L Q
Sbjct: 159 NQYVDLG--VDFRYFFVRKTMFVKYA--------QAFVALPGGFGTLDELFECVTLRQTS 208
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYL 183
+I P +++ +D F+ LL ++ G V+ DEV + ++ ++ +EAL+ +
Sbjct: 209 KIQQ---YPIVLVGHD-FWDGLLGWVRQHLVAEGMVSPDEV-DIIQVVETAAEALAAI 261
>gi|271969619|ref|YP_003343815.1| Rossmann fold nucleotide-binding protein-like protein
[Streptosporangium roseum DSM 43021]
gi|270512794|gb|ACZ91072.1| Rossmann fold nucleotide-binding protein-like protein
[Streptosporangium roseum DSM 43021]
Length = 267
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 6 PHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P +E+G +I R L + +G GPG M+A KGA +AG G VG
Sbjct: 79 PEDTPEYEMGVQIGRKLSEAGYAVITGGGPGCMEAANKGAREAG----GVSVGLGIELPF 134
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ + Y+ L + R+F RK + SC VALPGG GT+DE+FE L L
Sbjct: 135 EQHMNEYVDLG--IEFRYFFVRKTMFVKY-----SC---GFVALPGGFGTMDELFEALTL 184
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALS 181
+Q ++ S P ++M + F+ LLD++ + G ++ +V L + D EA+
Sbjct: 185 VQTRKVTS---FPVVLMGTE-FWGGLLDWIKNTLVSSGKISLADV-DLVHVTDDVDEAVR 239
Query: 182 YLAE 185
+A+
Sbjct: 240 IIAD 243
>gi|223937581|ref|ZP_03629484.1| conserved hypothetical protein [bacterium Ellin514]
gi|223893744|gb|EEF60202.1| conserved hypothetical protein [bacterium Ellin514]
Length = 227
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVGGFKVGKEAGEWTA 63
+P+Y + L +A+ + +G GPG+M A +GA +A GK +G + E
Sbjct: 50 NPYYQATVTLARGLAKH-NLAVITGGGPGIMAAANRGASRAHGKSIG---LNIELPLEQK 105
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
N + +P+ + +F ARK + ++ V +PGG GTLDE FE+L L+
Sbjct: 106 GNLYTNIPINFH----YFFARKVCFVKYSL--------GFVFMPGGFGTLDEFFEVLTLV 153
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q RI P L++ +++ L+ ++ D G + L+++ D EA+ +
Sbjct: 154 QTRRI-PRFP---LILFGKTYWTGLIKWMRATLDAGKFISEGDMELFRVTDDPQEAIDVI 209
Query: 184 AEFYD 188
++ +
Sbjct: 210 LDYKN 214
>gi|298345292|ref|YP_003717979.1| Rossmann fold nucleotide-binding protein [Mobiluncus curtisii ATCC
43063]
gi|304390849|ref|ZP_07372801.1| methionyl-tRNA formyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|298235353|gb|ADI66485.1| Rossmann fold nucleotide-binding protein [Mobiluncus curtisii ATCC
43063]
gi|304325732|gb|EFL92978.1| methionyl-tRNA formyltransferase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 239
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 27/178 (15%)
Query: 12 FELGGEIARLLDCTTWS---GAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAGEWTASNF 66
++LG EI ++ +S G GPGLM+AV+KGA G +G G ++ E G
Sbjct: 75 YQLGEEIGKVFAEAGFSIITGGGPGLMEAVSKGAHTHDGSTIGLGIELPHEQG------I 128
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+ Y+ L + R+F RK + A A VALPGG GTLDE+FE + L Q
Sbjct: 129 NQYVDLG--VEFRYFFVRKTMFVKYA--------QAFVALPGGFGTLDELFECVTLRQTS 178
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYL 183
+I P +++ +D F+ LL ++ G V+ DEV + ++ ++ +EAL+ +
Sbjct: 179 KIQQ---YPIVLVGHD-FWDGLLGWVRQHLVAEGMVSPDEV-DIIQVVETAAEALAAI 231
>gi|116075084|ref|ZP_01472344.1| putative dape gene and orf2 [Synechococcus sp. RS9916]
gi|116067281|gb|EAU73035.1| putative dape gene and orf2 [Synechococcus sp. RS9916]
Length = 310
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 24/155 (15%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-HGLIDCAV 93
M+A +GA AG G + K GE +PY+ E +F+ RK H ++ A
Sbjct: 164 MEAANRGAFDAGGRSIGLSI-KLPGE---PEPNPYITPELCFQFNYFALRKFHFVMRSA- 218
Query: 94 RNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF-- 151
A V PGG GTLDE+FE+L L Q I S +PV ++ F+ +L+DF
Sbjct: 219 --------AAVLFPGGFGTLDELFEVLTLRQTA-IKSPMPV---ILYGKEFWSRLIDFDY 266
Query: 152 LGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
L DC + +DE L++ D+ EA S++ F
Sbjct: 267 LADC----GLIRDEHLDLFQFADTPEEAWSWIQAF 297
>gi|453364705|dbj|GAC79671.1| hypothetical protein GM1_011_01000 [Gordonia malaquae NBRC 108250]
Length = 270
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 12 FELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+ LG ++ R L + +G GPG M+A KGA +AG G + + + +P
Sbjct: 107 YNLGVDVGRRLGEAGFAVITGGGPGAMEATNKGAFEAGAQSIGLNIELPFEQ----HINP 162
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ L + R+F RK + + A V LPGG+GTLDE+FE L L+Q ++
Sbjct: 163 YVTLA--INFRYFFVRKTMFVKYS--------QAFVCLPGGIGTLDELFEALTLVQTRKV 212
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L P +++ D F+ L+D++ + E L + D+ EA+
Sbjct: 213 ---LRFPIVLVGRD-FWGPLVDWMKNTLVADGKISPEDLDLITLVDTPEEAVQ 261
>gi|418471684|ref|ZP_13041484.1| hypothetical protein SMCF_4453 [Streptomyces coelicoflavus ZG0656]
gi|371547707|gb|EHN76067.1| hypothetical protein SMCF_4453 [Streptomyces coelicoflavus ZG0656]
Length = 252
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA++A G VG G ++ E G
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGALEAKGVSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q +++ + P+ V+ ++ L+D+L G G A+ ++ L+ + D EA+
Sbjct: 189 LVQTQKV-TRFPI---VLFGSEYWGGLVDWLRGTLVAQGKAAEKDLL-LFHVTDDVDEAV 243
Query: 181 SYLAE 185
+ +++
Sbjct: 244 ALVSK 248
>gi|254477397|ref|ZP_05090783.1| decarboxylase family protein [Ruegeria sp. R11]
gi|214031640|gb|EEB72475.1| decarboxylase family protein [Ruegeria sp. R11]
Length = 282
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G +G + Y+ + +F+ RK
Sbjct: 128 TGGGPGVMEAGNRGAIDAG----GASIGLNIVLPHEQAPNEYVTPDLCFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ +F++K
Sbjct: 184 FLMRA--------RAITIFPGGFGTLDEMFESLTLIQTGRMER---VPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDK 194
++++ D GT++ DE L++ ++ EAL + + + DK
Sbjct: 232 IINWDA-LADAGTIS-DEDLDLFRFVETAEEALHIIDNWEPAPARDK 276
>gi|126738617|ref|ZP_01754322.1| decarboxylase family protein [Roseobacter sp. SK209-2-6]
gi|126720416|gb|EBA17122.1| decarboxylase family protein [Roseobacter sp. SK209-2-6]
Length = 281
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 20/159 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA AG G VG + Y+ E +F+ RK H
Sbjct: 128 TGGGPGVMEAGNRGAEDAG----GRSVGLSIVLPHEQAPNGYVTPELSFNFHYFAIRKMH 183
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A A+ PGG GTLDE+FE L LIQ R+ VPF++ + F++
Sbjct: 184 FLMRAA---------AITVFPGGFGTLDELFETLTLIQTGRMER---VPFILFGRE-FWE 230
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
K++++ D GT+++ ++ L+K ++ EA + E
Sbjct: 231 KIINWEA-LADAGTISEQDL-DLFKFVETAEEAAQIINE 267
>gi|400756281|ref|YP_006564649.1| hypothetical protein PGA2_c34460 [Phaeobacter gallaeciensis 2.10]
gi|398655434|gb|AFO89404.1| hypothetical protein PGA2_c34460 [Phaeobacter gallaeciensis 2.10]
Length = 282
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G VG + Y+ + +F+ RK
Sbjct: 128 TGGGPGVMEAGNRGAIDAG----GASVGLNIVLPHEQAPNEYVTPDLCFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ +F++K
Sbjct: 184 FLMRA--------RAITVFPGGFGTLDEMFETLTLIQTGRMER---VPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++++++ L++ ++ EA+ +
Sbjct: 232 IINWEA-LADAGTISEEDL-DLFRFVETAEEAIHII 265
>gi|399994738|ref|YP_006574978.1| hypothetical protein PGA1_c36280 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398659293|gb|AFO93259.1| hypothetical protein PGA1_c36280 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 282
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G VG + Y+ + +F+ RK
Sbjct: 128 TGGGPGVMEAGNRGAIDAG----GASVGLNIVLPHEQAPNEYVTPDLCFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ +F++K
Sbjct: 184 FLMRA--------RAITVFPGGFGTLDEMFETLTLIQTGRMER---VPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++++++ L++ ++ EA+ +
Sbjct: 232 IINWEA-LADAGTISEEDL-DLFRFVETAEEAIHVI 265
>gi|54026714|ref|YP_120956.1| hypothetical protein nfa47400 [Nocardia farcinica IFM 10152]
gi|54018222|dbj|BAD59592.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 277
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 35/157 (22%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y + +G +AR +G GPG M+A +GA +AG G+ +G
Sbjct: 98 DHPEYEAGYAIGAALARA-GFAVITGGGPGAMEAANRGASEAG----GYSIG-------- 144
Query: 64 SNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
LP E L R+F RK + + A V LPGG GTLDE
Sbjct: 145 --LGIELPFEQSLNDWVDLGINFRYFFVRKTMFVKYS--------EAFVCLPGGFGTLDE 194
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
+FE L L+Q +I + P+ ++ S++ L+D++
Sbjct: 195 LFEALTLVQTGKI-TRFPI---ILFGSSYWAGLVDWM 227
>gi|149278420|ref|ZP_01884557.1| hypothetical protein PBAL39_19854 [Pedobacter sp. BAL39]
gi|149230790|gb|EDM36172.1| hypothetical protein PBAL39_19854 [Pedobacter sp. BAL39]
Length = 244
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP+Y + E+ E+A+ +G GPG+M+A +GA + G G +G
Sbjct: 58 DHPYYELAREISKELAQH-GFAIMTGGGPGIMEAANRGAKEGG----GLSIGCNIVLPFE 112
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ +PYL + ++ +F RK L + A V LPGG GTLDE FE + L+
Sbjct: 113 QHENPYL--DKFVNIEYFFVRKELLRKYSF--------AFVVLPGGFGTLDEFFETVTLV 162
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ P+ V+ F+ +++ + + T++ ++ L DS E + ++
Sbjct: 163 QTKKV-ERFPI---VVVGKEFHHAIIEHIRVMAENQTISSVDL-DLILFTDSVEEVVEHI 217
Query: 184 AEFYDLSSIDK 194
++ ++ K
Sbjct: 218 NKYAAEKNLPK 228
>gi|325287679|ref|YP_004263469.1| hypothetical protein Celly_2781 [Cellulophaga lytica DSM 7489]
gi|324323133|gb|ADY30598.1| Conserved hypothetical protein CHP00730 [Cellulophaga lytica DSM
7489]
Length = 228
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 21/182 (11%)
Query: 10 QSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+ +EL ++A+ + + +G GPG+M+A KGA AG G VG +
Sbjct: 55 KYYELAVDVAKSIAEAGYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNIELPFEQHD 110
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PY+ + + +F RK + + V +PGG GTLDE+FE + LIQ
Sbjct: 111 NPYIDHDKSINFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITLIQTN 162
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSYLAE 185
+IG + P+ ++ SF+ L+D++ + G ++ ++ L KI D+ E + +
Sbjct: 163 KIG-KFPI---ILVGTSFWTGLIDWVKETMLGEGNISASDL-DLIKIVDTADEVVEIIDA 217
Query: 186 FY 187
FY
Sbjct: 218 FY 219
>gi|237709158|ref|ZP_04539639.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|345514250|ref|ZP_08793763.1| hypothetical protein BSEG_03448 [Bacteroides dorei 5_1_36/D4]
gi|423230572|ref|ZP_17216976.1| TIGR00730 family protein [Bacteroides dorei CL02T00C15]
gi|423240793|ref|ZP_17221907.1| TIGR00730 family protein [Bacteroides dorei CL03T12C01]
gi|423244281|ref|ZP_17225356.1| TIGR00730 family protein [Bacteroides dorei CL02T12C06]
gi|229437230|gb|EEO47307.1| hypothetical protein BSEG_03448 [Bacteroides dorei 5_1_36/D4]
gi|229456854|gb|EEO62575.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|392630716|gb|EIY24702.1| TIGR00730 family protein [Bacteroides dorei CL02T00C15]
gi|392642462|gb|EIY36228.1| TIGR00730 family protein [Bacteroides dorei CL02T12C06]
gi|392643755|gb|EIY37504.1| TIGR00730 family protein [Bacteroides dorei CL03T12C01]
Length = 195
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 12 FELGGEIARLL---DCTTWSGAG-PGLMDAVTKGAMQAGKPVGG----FKVGKEAGEWTA 63
F++ E+ RLL +GAG GLM A + ++AG V G F V E G W
Sbjct: 22 FDVAEELGRLLAEKKINLINGAGCIGLMAATSDATLEAGGTVTGVIPHFMV--EQG-WHH 78
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ + ET RK + D + V+ALPGG GTL+E+ EI+
Sbjct: 79 TGLTRLIETET------MHERKRMMADLS--------DGVIALPGGCGTLEELLEIITWK 124
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
QL G L P +++N + FY LL+ L D + K+ VA +WK+ + EA++ L
Sbjct: 125 QL---GLYLN-PIIILNINGFYDSLLEMLQRAVDENFMRKEHVA-IWKVASTAEEAINLL 179
>gi|441513162|ref|ZP_20994994.1| hypothetical protein GOAMI_15_01450 [Gordonia amicalis NBRC 100051]
gi|441452143|dbj|GAC52955.1| hypothetical protein GOAMI_15_01450 [Gordonia amicalis NBRC 100051]
Length = 274
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 25/158 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ P+ P Y LG + R L + +G GPG+M A +GA +AG G +
Sbjct: 90 LAPESPEY----ALGVRVGRALGEAGYAVITGGGPGVMRAANQGAHEAGAQSIGLNIELP 145
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ + +P++ L + R+F RK + A A V LPGG+GTLDE+F
Sbjct: 146 FEQ----DLNPWVDLG--MNFRYFFVRKTMFVKYA--------QAFVCLPGGMGTLDELF 191
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E L L+Q +++ + P +++ D F+ LLD++ D
Sbjct: 192 EALTLVQTKKV---VRFPIVLVGRD-FWGGLLDWMRDV 225
>gi|71905806|ref|YP_283393.1| hypothetical protein Daro_0164 [Dechloromonas aromatica RCB]
gi|71845427|gb|AAZ44923.1| Conserved hypothetical protein 730 [Dechloromonas aromatica RCB]
Length = 242
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 25/189 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+ P+Y+ L + ARLL + SG GPG+M+A KGA P G +
Sbjct: 59 PESPYYM----LTEQTARLLSDSGFSVISGGGPGIMEAANKGAFFGKSPSVGLNIQLPHE 114
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY + T R F ARK+ + A +A V +PGG GTLDE+ E
Sbjct: 115 QKN----NPYQDISQ--TFRHFFARKYMFVRFA--------SAYVVMPGGFGTLDELMEA 160
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ + G ++P L++ +F+ ++ + D + E +L ++ D +
Sbjct: 161 LTLIQTGK-GRKIP---LILVGSAFWGGMIAWFKDRLVAEGMVDPEDMNLIQLIDEPEKV 216
Query: 180 LSYLAEFYD 188
+ + + Y+
Sbjct: 217 VEAIFKHYE 225
>gi|221053626|ref|XP_002258187.1| lysine decarboxylase [Plasmodium knowlesi strain H]
gi|193808020|emb|CAQ38724.1| lysine decarboxylase, putative [Plasmodium knowlesi strain H]
Length = 354
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 25/160 (15%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWTASNFHPYLPLETYLTCRFFSA 83
+G GPG M+A KG+ A GF + K A ++ N +F
Sbjct: 202 TGGGPGFMEAANKGSRDANGRSLGFMISLPFEKGANKYVDENLS--------FKFHYFFT 253
Query: 84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
RK LI ++ A + LPGG GTLDEM EIL L Q ++ +P+ ++
Sbjct: 254 RKFWLIYLSL--------AFIILPGGFGTLDEMMEILTLRQCKKFKRNVPI---ILFGKD 302
Query: 144 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
F+ +L+F E +G ++++++ S++ I D EA +Y+
Sbjct: 303 FWSSILNFKKLAE-YGLISQEDLDSIF-ITDCIEEAYNYV 340
>gi|213692572|ref|YP_002323158.1| hypothetical protein Blon_1704 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213524033|gb|ACJ52780.1| conserved hypothetical protein 730 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 279
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 117 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGVNQW-- 173
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK + + + V+ PGG GTLDEMFE+L L+
Sbjct: 174 --------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTLDEMFELLTLV 217
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 218 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISTID-PKLVTVTDDADEAV 270
>gi|406672534|ref|ZP_11079759.1| TIGR00730 family protein [Bergeyella zoohelcum CCUG 30536]
gi|405587078|gb|EKB60806.1| TIGR00730 family protein [Bergeyella zoohelcum CCUG 30536]
Length = 252
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 16/158 (10%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A KGA QAG G +G +F+PY+ + +F RK I +
Sbjct: 107 MEAGNKGAKQAG----GKSIGLNIELPFEQHFNPYIDKHYSMDFNYFFVRKVMFIKYS-- 160
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
V +PGG GTLDE+ E L LIQ +I + P+ ++ F+ LLD+ D
Sbjct: 161 ------QGFVVMPGGFGTLDELSEALTLIQTFKI-ARFPI---ILVGSEFWCGLLDWFKD 210
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSI 192
+ +E L+++ D+ EA++++ FYD SI
Sbjct: 211 TLLQQKMISEEDLHLFRVVDTAEEAVAHIKAFYDKYSI 248
>gi|326774166|ref|ZP_08233448.1| methionyl-tRNA formyltransferase [Actinomyces viscosus C505]
gi|326636305|gb|EGE37209.1| methionyl-tRNA formyltransferase [Actinomyces viscosus C505]
Length = 251
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 23/152 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGE 60
P+ P Y + E+G +AR +G GPG+M+A +G +AG VG G ++ E G
Sbjct: 76 PEDPTYRVAMEVGAGLARA-GYAVITGGGPGMMEAANRGCHEAGGTSVGLGIELPHEQG- 133
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE L
Sbjct: 134 -----MNEYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGMGTLDELFEAL 178
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++I S P+ V+ ++ LL++L
Sbjct: 179 TLVQTQKI-SSFPI---VLVDSGYWSGLLEWL 206
>gi|123966454|ref|YP_001011535.1| dehydrogenase [Prochlorococcus marinus str. MIT 9515]
gi|123200820|gb|ABM72428.1| predicted dehydrogenase [Prochlorococcus marinus str. MIT 9515]
Length = 294
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G + + S P L + +F+ RK
Sbjct: 150 TGGGPGIMEAANRGAFDAGCKSIGLNISLPNEQHPNSFITPGLCFK----FNYFAMRKFH 205
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ +R++ A V PGG GTLDE+FE+L L Q G + +P ++ D ++ K
Sbjct: 206 FV---MRSE-----AAVFFPGGFGTLDELFELLTLRQ---TGMKKNIPIILFGRD-YWNK 253
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++F C D G + + + S++K DS EA + + +F +
Sbjct: 254 VINFEYLC-DMGLIEEKHL-SIFKYADSAHEAWALIKKFNN 292
>gi|432335921|ref|ZP_19587471.1| hypothetical protein Rwratislav_13633 [Rhodococcus wratislaviensis
IFP 2016]
gi|430777153|gb|ELB92526.1| hypothetical protein Rwratislav_13633 [Rhodococcus wratislaviensis
IFP 2016]
Length = 265
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 3 PD-HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
PD HP Y LG +A +G GPG+M+A +GA ++G G+ +G
Sbjct: 84 PDGHPEYEAGRALGARLAEA-GYAVMTGGGPGVMEAANRGASESG----GYSIGLGIELP 138
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ L + R+F ARK + + A + LPGG GTLDE+FE L
Sbjct: 139 FEEGLNEWVDLG--INFRYFFARKTMFVKYS--------QAFICLPGGFGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ + P+ Y + L+D+L G + G +++ +V +L + D EA+
Sbjct: 189 LVQTRKV-TRFPIVLFGTEY---WSGLVDWLRGTLQRSGKISEGDV-NLLHVTDDVEEAV 243
Query: 181 SYL 183
+
Sbjct: 244 QIV 246
>gi|339505827|ref|YP_004693247.1| hypothetical protein RLO149_c043920 [Roseobacter litoralis Och 149]
gi|338759820|gb|AEI96284.1| hypothetical protein RLO149_c043920 [Roseobacter litoralis Och 149]
Length = 278
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GAM AG G + + S Y+ E +F+ RK
Sbjct: 126 TGGGPGVMEAGNRGAMDAGGRSIGLNIVLPHEQAPNS----YVTPELCFNFHYFAIRKMH 181
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A +A+ PGG GTLDE+FE L LIQ R+ PVP L+ F+
Sbjct: 182 FLMRA--------SAICVFPGGFGTLDELFEALTLIQTGRMQ---PVPVLLFGR-KFWDS 229
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
++++ D GT++ +++ L+ +S +EA+ + + D
Sbjct: 230 IINW-DALADAGTISAEDL-ELFSFVESATEAMEVIDRWQD 268
>gi|400292661|ref|ZP_10794588.1| TIGR00730 family protein [Actinomyces naeslundii str. Howell 279]
gi|399902246|gb|EJN85074.1| TIGR00730 family protein [Actinomyces naeslundii str. Howell 279]
Length = 274
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 21/182 (11%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P Y + E+G +AR +G GPG+M+A +G +AG G VG
Sbjct: 99 PDDPTYQMAVEVGVGLARA-GYAVITGGGPGMMEAANRGCHEAG----GISVGLGIELPH 153
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE L L
Sbjct: 154 EQGMNDYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGLGTLDELFEALTL 203
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALS 181
+Q +I S P+ + Y + LL+++ + G ++ + L + D EA+
Sbjct: 204 VQTRKI-SSFPIALVDSGY---WGGLLEWVRTAMVERGMISATD-PDLLHVVDGAEEAVD 258
Query: 182 YL 183
Y+
Sbjct: 259 YV 260
>gi|269928660|ref|YP_003320981.1| hypothetical protein Sthe_2745 [Sphaerobacter thermophilus DSM
20745]
gi|269788017|gb|ACZ40159.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
20745]
Length = 280
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G VG +PY+ L + R+F RK
Sbjct: 115 TGGGPGIMEAANRGAHDAG----GLSVGCNIELPFEQGMNPYVNLA--INFRYFFVRKTM 168
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A V PGG GTLDE+FE L LIQ E+I S PV +Y ++
Sbjct: 169 FVKYA--------EAFVIFPGGFGTLDELFEALTLIQTEKI-SYFPVILFGRDY---WQG 216
Query: 148 LLDFLG 153
L+D+L
Sbjct: 217 LIDWLA 222
>gi|148553795|ref|YP_001261377.1| hypothetical protein Swit_0872 [Sphingomonas wittichii RW1]
gi|148498985|gb|ABQ67239.1| conserved hypothetical protein 730 [Sphingomonas wittichii RW1]
Length = 302
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + + P+L + + +F+ RK H
Sbjct: 142 SGGGPSIMEAANRGAHDVGAESIGLNIVLPFEQTPNAYVTPHLSFQFH----YFALRKMH 197
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV A PGG GT DE+FE+L L+Q G +P + D F++
Sbjct: 198 FLLRA---------RAVAAFPGGFGTFDELFELLTLVQ---TGKMAQLPIFLFGQD-FWR 244
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHEVNLKSTHG 206
++LDF E+ G + ++++ +L++ ++ EA L +Y R + + ++ G
Sbjct: 245 RVLDFDALVEE-GVIGENDL-NLFRFVETAEEAWEKLNLYYATRERSYRHRDPSTQAAAG 302
>gi|49474895|ref|YP_032936.1| hypothetical protein BH00730 [Bartonella henselae str. Houston-1]
gi|49237700|emb|CAF26889.1| hypothetical protein BH00730 [Bartonella henselae str. Houston-1]
Length = 287
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 33/194 (17%)
Query: 7 HYLQSFELGGEIARLLDC----------TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGK 56
HY ++ E ARL C +G GPG+M+A ++GA+ G P G V
Sbjct: 115 HY---YDEAREFARLCSCYSATTEYREFVVVTGGGPGIMEAGSRGAVDVGAPTVGLNVVL 171
Query: 57 EAGEWTASNFHPYLPLE-TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+ S P+L YL R + H L+ A+ PGG GTLDE
Sbjct: 172 PHEQEPNSYVTPHLCFNFHYLGIR----KMHFLMRAK---------ALAIFPGGFGTLDE 218
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L LIQ R+ VP L+ + F+ +++F GT++ +V L K D+
Sbjct: 219 LFETLTLIQTGRMKR---VPILLFGKE-FWDNVINF-DYLSAQGTISPSDV-DLVKFVDA 272
Query: 176 NSEALSYLAEFYDL 189
++A + FY L
Sbjct: 273 AAQAFEEIRCFYKL 286
>gi|194337404|ref|YP_002019198.1| hypothetical protein Ppha_2390 [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309881|gb|ACF44581.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 245
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 17/161 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M A KGA AG GF + + Y+ + ++ ++F RK
Sbjct: 93 TGGGPGVMAAANKGAQGAGGVSIGFNIKLP----NQQQPNKYIDHDKLVSFQYFFVRKVM 148
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-DSFYK 146
+ A A +ALPGG GTLDE+ E + LIQ + PV + +Y + FY+
Sbjct: 149 FMKYA--------QAFIALPGGFGTLDEVMEAITLIQTGK-SERFPVILVGRSYWEGFYR 199
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ + + C D G + D++ ++ + DS E ++ + FY
Sbjct: 200 WIEESM--CRDKGYIHADDLGFIY-LEDSPDEVIAIIKRFY 237
>gi|384199772|ref|YP_005585515.1| hypothetical protein [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|320458724|dbj|BAJ69345.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 313
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 151 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGVNQW-- 207
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK + + + V+ PGG GTLDEMFE+L L+
Sbjct: 208 --------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTLDEMFELLTLV 251
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 252 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISTID-PKLVTVTDDADEAV 304
>gi|455646266|gb|EMF25294.1| hypothetical protein H114_27248 [Streptomyces gancidicus BKS 13-15]
Length = 252
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA++A G VG G ++ E G
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGALEADGVSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ ++ P+ V+ ++ L+D+L A ++ L+ + D EA++
Sbjct: 189 LVQTQKV-TQFPI---VLFGTEYWGGLVDWLRSTVIAQGKAAEKDLLLFHVTDDVDEAVA 244
Query: 182 YLAE 185
+++
Sbjct: 245 LVSK 248
>gi|398835990|ref|ZP_10593340.1| TIGR00730 family protein [Herbaspirillum sp. YR522]
gi|398214312|gb|EJN00894.1| TIGR00730 family protein [Herbaspirillum sp. YR522]
Length = 248
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 35/193 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVG---- 55
PD PHY L +IAR L + SG GPG+M+A +GA P G +
Sbjct: 62 PDDPHY----ALCIDIARRLSDAGYAVISGGGPGIMEAANRGAFDGASPSVGLNIELPHE 117
Query: 56 KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
+ W + L+ R F ARK + A A V LPGG GTLDE
Sbjct: 118 QHGNAWQ----------DISLSFRHFFARKVAFVKYA--------DAYVVLPGGFGTLDE 159
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICD 174
+ E L L+Q G +P +++ F+ L+D++ D G ++ ++ +L ++ D
Sbjct: 160 LTEALTLMQ---TGKSRLMPVILVG-SQFWAGLIDWIKTRLVDDGMISPKDL-NLLQVID 214
Query: 175 SNSEALSYLAEFY 187
+E ++ + +F+
Sbjct: 215 DPAEIVTAIRKFH 227
>gi|385854458|ref|YP_005900971.1| hypothetical protein NMBM01240355_0288 [Neisseria meningitidis
M01-240355]
gi|416181481|ref|ZP_11611675.1| hypothetical protein TIGR00730 [Neisseria meningitidis M13399]
gi|433464266|ref|ZP_20421760.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM422]
gi|433487471|ref|ZP_20444650.1| putative lysine decarboxylase family protein [Neisseria
meningitidis M13255]
gi|433489645|ref|ZP_20446784.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM418]
gi|325135087|gb|EGC57715.1| hypothetical protein TIGR00730 [Neisseria meningitidis M13399]
gi|325203399|gb|ADY98852.1| conserved hypothetical protein TIGR00730 [Neisseria meningitidis
M01-240355]
gi|432206076|gb|ELK62091.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM422]
gi|432226236|gb|ELK81969.1| putative lysine decarboxylase family protein [Neisseria
meningitidis M13255]
gi|432230641|gb|ELK86316.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM418]
Length = 210
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
+H Y +F L RL D SG GPG+M+A KGA AGK V VG
Sbjct: 42 NHADYAFAFRLA---RRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIVLP 94
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY + L F+ RK + A V +PGG GTLDE+FEIL
Sbjct: 95 HEQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILT 144
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q G P P +V+ +F+ L +++ + + ASL+ I D E ++
Sbjct: 145 LVQ---TGKVPPRP-IVLVGKAFWSGLAEWINAQLLARGLISEGAASLFAISDDEDEIVA 200
Query: 182 YLAE 185
YL+E
Sbjct: 201 YLSE 204
>gi|308177953|ref|YP_003917359.1| hypothetical protein AARI_21680 [Arthrobacter arilaitensis Re117]
gi|307745416|emb|CBT76388.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
Length = 261
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 25/181 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAM-QAGKPVG-GFKVGKEAGE 60
P+ P+Y + +G +A TT +G GPG M+A KGA + G VG G ++ E G
Sbjct: 83 PNSPYYAMAQRVGSRLAEE-GITTITGGGPGAMEAANKGAADKDGISVGLGIELPFETGL 141
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ N L R+F RK + + + LPGG GTLDE+FE L
Sbjct: 142 NASVN--------KGLNFRYFFVRKTMFVKYS--------QGFIVLPGGFGTLDELFEAL 185
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
L+Q ++I S P+ V+ F+ L+D++ + GT++ ++ +L+ I D EA
Sbjct: 186 TLVQTKKITS-FPI---VLVGSEFWGGLVDWMTNTLLAEGTISAGDL-NLFTITDDPDEA 240
Query: 180 L 180
+
Sbjct: 241 V 241
>gi|256828277|ref|YP_003157005.1| hypothetical protein Dbac_0464 [Desulfomicrobium baculatum DSM
4028]
gi|256577453|gb|ACU88589.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM
4028]
Length = 299
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 21/176 (11%)
Query: 7 HYLQSFELGGEIARLLDC---TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+Y ++ +LG I+ +D +G G G+M A +GA VG +G
Sbjct: 126 YYEEARKLGRLISENVDTCKHVVITGGGFGIMGAANRGAHD----VGAKSIGMNIVLPFE 181
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ E +F+ RK L+ A A+VA PGG GT+DE+FE L LI
Sbjct: 182 QEPNPYITPELSFQFHYFAIRKMHLLMRA--------KALVAFPGGFGTMDELFEALTLI 233
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
Q ++ P+P L+ F+ K+++F E+ GT+ +++ +L++ + EA
Sbjct: 234 QTRKVK---PIPVLLFG-RRFWHKVVNFEALVEE-GTINAEDL-NLFQYVSTAEEA 283
>gi|148658137|ref|YP_001278342.1| hypothetical protein RoseRS_4048 [Roseiflexus sp. RS-1]
gi|148570247|gb|ABQ92392.1| conserved hypothetical protein 730 [Roseiflexus sp. RS-1]
Length = 266
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 25/158 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+G D P Y + + +AR L + +G GPG+M+A +GA +AG G +
Sbjct: 73 VGVDDPMYQAAVD----VARALGEAGFAIITGGGPGIMEAGNRGAREAGARSVGLNIELP 128
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ + +PY+ +T +T R+F RK L+ A A V PGG GTLDE+F
Sbjct: 129 FEQ----HLNPYV--DTSVTFRYFFVRKMMLVKYA--------QAFVIFPGGFGTLDELF 174
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E L L+Q ++ + P ++ N +++ LL+++ +
Sbjct: 175 EALTLVQTGKVRN---FPIILFN-STYWNGLLNWMRET 208
>gi|296453944|ref|YP_003661087.1| hypothetical protein BLJ_0791 [Bifidobacterium longum subsp. longum
JDM301]
gi|296183375|gb|ADH00257.1| hypothetical protein BLJ_0791 [Bifidobacterium longum subsp. longum
JDM301]
Length = 313
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 29/178 (16%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EWTA 63
Y + +G +IA+ + +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 151 YKAARRMGSQIAKR-NIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW-- 207
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ R+F RK + + + V+ PGG GTLDEMFE+L L+
Sbjct: 208 --------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTLDEMFELLTLV 251
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ + +PV V+ +++ L D+L G + G ++ + L + D EA+
Sbjct: 252 QTHKV-ANIPV---VLYGKEYWQGLFDWLNGPVAEHGMISAID-PKLVTVTDDADEAV 304
>gi|453050524|gb|EME98060.1| hypothetical protein H340_23428 [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 249
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG M+A KGAM+AG G VG +PY+ L + R+F RK
Sbjct: 106 TGGGPGAMEAANKGAMEAG----GVSVGLGIELPFEQGINPYVNLG--VDFRYFFVRKTM 159
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A + V LPGG+GTLDE+FE L L+Q +++ + P+ V+ ++
Sbjct: 160 FVKYA--------SGFVVLPGGLGTLDELFEALTLVQTKKV-TRFPI---VLFGSEYWSG 207
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L+ ++ D G L+ + D EA++ + +
Sbjct: 208 LVRWIEDTLVAGGKVGAHDLQLFHVTDDVEEAIALVTK 245
>gi|406897913|gb|EKD41705.1| hypothetical protein ACD_73C00569G0002 [uncultured bacterium]
Length = 231
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 31/196 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVG-GFKVGKEAGEWT 62
D PHY + ++G ++ + +G GPGLM+A KGA QAGK + G + + E
Sbjct: 61 DSPHYKMTEKVGRAVSDA-GFSVITGGGPGLMEAANKGA-QAGKSLSIGLNI-EIPMEQV 117
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
A+++ L+ L ++F RK + A +A + PGG GTLDE FE L L
Sbjct: 118 ANSY-----LDLSLDFKYFFVRKVMFVKYA--------SAFIITPGGFGTLDEAFEALTL 164
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q + +PV ++ S++K ++D++ KD+V S I ++ + ++
Sbjct: 165 VQTNKT-ERMPV---ILMGKSYWKGMIDWV----------KDQVISFGYIDKADLKLVTL 210
Query: 183 LAEFYDLSSIDKRVHE 198
+ ++ SI K+ H
Sbjct: 211 TDDVDEVVSIIKKHHR 226
>gi|77166290|ref|YP_344815.1| hypothetical protein Noc_2839 [Nitrosococcus oceani ATCC 19707]
gi|254435396|ref|ZP_05048903.1| Possible lysine decarboxylase family [Nitrosococcus oceani AFC27]
gi|76884604|gb|ABA59285.1| Conserved hypothetical protein 730 [Nitrosococcus oceani ATCC
19707]
gi|207088507|gb|EDZ65779.1| Possible lysine decarboxylase family [Nitrosococcus oceani AFC27]
Length = 271
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 14 LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
L E R + CT G GPG+M+A +GA +A G + E+ S Y+ E
Sbjct: 106 LSDEERRFVVCT---GGGPGIMEAANRGASEAKGMNIGLTISIPIEEFDNS----YITRE 158
Query: 74 TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP 133
+F RK A A++ PGG GTLDE+FE+L L+Q +I LP
Sbjct: 159 LSFHFHYFFMRKFWFAYLA--------KAIIVFPGGFGTLDELFELLTLMQTGKIRKHLP 210
Query: 134 VPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
+ ++ +++ ++++F + + ++ L++ DS EA ++L + +I+
Sbjct: 211 I---ILFGKAYWNEVINFDALVR-YSNIDPQDLDLLYQ-TDSVDEAYAFLIDHLTRYAIE 265
Query: 194 KR 195
+R
Sbjct: 266 ER 267
>gi|120436412|ref|YP_862098.1| hypothetical protein GFO_2066 [Gramella forsetii KT0803]
gi|117578562|emb|CAL67031.1| conserved hypothetical protein [Gramella forsetii KT0803]
Length = 229
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA AG G VG + +PY+ + L +F RK
Sbjct: 76 TGGGPGIMEAGNKGAHLAG----GTSVGLNIDLPFEQHDNPYIDNDKSLDFDYFFVRKVM 131
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + V +PGG GTLDE+FE + LIQ +I + P+ ++ F+
Sbjct: 132 FVKYS--------QGFVVMPGGFGTLDELFEAITLIQTHKI-DKFPI---ILVGSEFWGG 179
Query: 148 LLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
L D++ + + +++ ++ L ++ D+ E + L +FYD
Sbjct: 180 LADWIKKTLLDSFNNISEADI-DLVQVVDTEDEVIEILDQFYD 221
>gi|296314836|ref|ZP_06864777.1| methionyl-tRNA formyltransferase [Neisseria polysaccharea ATCC
43768]
gi|296838336|gb|EFH22274.1| methionyl-tRNA formyltransferase [Neisseria polysaccharea ATCC
43768]
Length = 210
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHTDYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIALPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAAFFSYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + ASL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPVVLVG-KAFWSGLAEWISAQLLARGLISEGAASLFAISDDEDEIVAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|116671346|ref|YP_832279.1| hypothetical protein Arth_2800 [Arthrobacter sp. FB24]
gi|116611455|gb|ABK04179.1| conserved hypothetical protein 730 [Arthrobacter sp. FB24]
Length = 275
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Query: 12 FELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG--EWTAS 64
+ELG E+ R L +G GPG M+A KGA+Q G VG G ++ E G +W
Sbjct: 92 YELGVEVGRKLAEAGVAVITGGGPGSMEAANKGAVQGNGVSVGLGIELPFEQGLNQW--- 148
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
++ + R+F ARK + A + LPGG+GTLDE+FE + L+Q
Sbjct: 149 -------VDLGINFRYFFARKTMFVKYA--------QGFIVLPGGLGTLDELFEAMVLVQ 193
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
++ S P+ V+ +F+ ++D++ G + G +++ ++ SL ++ D + A+
Sbjct: 194 TRKVTS-FPI---VLLGTAFWGPMIDWIRGTLVEDGMISEKDL-SLIQVVDEPAHAV 245
>gi|427409885|ref|ZP_18900087.1| TIGR00730 family protein [Sphingobium yanoikuyae ATCC 51230]
gi|425712018|gb|EKU75033.1| TIGR00730 family protein [Sphingobium yanoikuyae ATCC 51230]
Length = 292
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA+ G+ G + + A N ++ E +F+ RK H
Sbjct: 142 SGGGPSIMEAANRGAVDVGQTTIGMNIVLPHEQ--APNL--FVTPELSFQFHYFALRKMH 197
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GT DEMFE+L LIQ G P+P L+ D F+
Sbjct: 198 FLLRA---------RALAVFPGGFGTFDEMFELLTLIQ---TGKMKPIPILLFGKD-FWN 244
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
K++DF D G ++ +++ +L ++ +A + + +FY
Sbjct: 245 KVVDFEA-LADEGVISHNDL-NLLTWVETAEDAWAAVQDFY 283
>gi|381199086|ref|ZP_09906238.1| putative nucleotide-binding protein [Sphingobium yanoikuyae
XLDN2-5]
Length = 292
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA+ G+ G + + A N ++ E +F+ RK H
Sbjct: 142 SGGGPSIMEAANRGAVDVGQTTIGMNIVLPHEQ--APNL--FVTPELSFQFHYFALRKMH 197
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GT DEMFE+L LIQ G P+P L+ D F+
Sbjct: 198 FLLRA---------RALAVFPGGFGTFDEMFELLTLIQ---TGKMKPIPILLFGKD-FWN 244
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
K++DF D G ++ +++ +L ++ +A + + +FY
Sbjct: 245 KVVDFEA-LADEGVISHNDL-NLLTWVETAEDAWAAVQDFY 283
>gi|343926930|ref|ZP_08766423.1| hypothetical protein GOALK_072_01520 [Gordonia alkanivorans NBRC
16433]
gi|343763290|dbj|GAA13349.1| hypothetical protein GOALK_072_01520 [Gordonia alkanivorans NBRC
16433]
Length = 274
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD P Y LG + R L + +G GPG M A +GA +AG G +
Sbjct: 90 LKPDSPEY----ALGVRVGRALGEAGYAVITGGGPGAMQAANQGAHEAGAQSIGLNIELP 145
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +P++ L + R+F RK + A A V LPGG+GTLDE+F
Sbjct: 146 FEQ----GLNPWVDLG--MNFRYFFVRKTMFVKYA--------QAFVCLPGGMGTLDELF 191
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E L L+Q +++ + P +++ D F+ LLD++ D
Sbjct: 192 EALTLVQTKKV---VRFPIVLVGSD-FWGGLLDWMRDV 225
>gi|430001993|emb|CCF17773.1| Putative lysine decarboxylase family protein, conserved protein
[Rhizobium sp.]
Length = 283
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA +AG P GF V + A N Y+ + L +F+ RK L+ A
Sbjct: 147 MEAGNRGASEAGAPTVGFNVVLPHEQ--APN--RYVTPDLSLNFHYFAIRKMHLMMRA-- 200
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
A+ PGG GTLDEMFE L LIQ R+ +PF++ + F+ +++++
Sbjct: 201 ------KAIAIFPGGFGTLDEMFEGLTLIQTGRMER---IPFILFGKE-FWHRIVNWQA- 249
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
D+GT+A +++ L ++ EA + +FY+
Sbjct: 250 LADFGTIAPEDI-DLISFVETADEAWKIIGDFYE 282
>gi|346993025|ref|ZP_08861097.1| decarboxylase family protein [Ruegeria sp. TW15]
Length = 280
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G+ +G + Y+ + +F+ RK
Sbjct: 128 TGGGPGVMEAGNRGALDAG----GYSIGLNIVLPHEQAPNLYVTPDLSFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GT+DE+FE L LIQ R+ VPFL+ + F+++
Sbjct: 184 FLMRA--------RAITIFPGGFGTMDELFESLTLIQTGRMER---VPFLLFGRE-FWER 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++ DE L++ D+ EA+ +
Sbjct: 232 VINWEA-LADAGTIS-DEDLDLFRFVDTAQEAVEII 265
>gi|269955777|ref|YP_003325566.1| hypothetical protein Xcel_0977 [Xylanimonas cellulosilytica DSM
15894]
gi|269304458|gb|ACZ30008.1| conserved hypothetical protein [Xylanimonas cellulosilytica DSM
15894]
Length = 268
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 25/183 (13%)
Query: 4 DHPHYLQSFELGGEIARLLD--CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
DH Y + ++G E L+D +G GPG+M+A +GA +AG G +G
Sbjct: 84 DHRDYADAVQVGRE---LVDEGYAVITGGGPGIMEAANRGASEAG----GLSIGLGIELP 136
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ L + R+F ARK + A + +PGG GT DE+FE L
Sbjct: 137 FEQGMNEYVNLG--VNFRYFFARKTMFVKYA--------QGFIVMPGGFGTFDELFEALT 186
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ + PV + Y ++ LLD+L G D G V+ + L + D +EA+
Sbjct: 187 LVQTHKV-TGFPVALVGSEY---WQGLLDWLRGPVLDRGMVSAAD-PDLLHLTDDPAEAV 241
Query: 181 SYL 183
++
Sbjct: 242 KFV 244
>gi|384103768|ref|ZP_10004733.1| hypothetical protein W59_20403 [Rhodococcus imtechensis RKJ300]
gi|383838732|gb|EID78101.1| hypothetical protein W59_20403 [Rhodococcus imtechensis RKJ300]
Length = 265
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
HP Y LG +A +G GPG+M+A +GA ++G G+ +G
Sbjct: 87 HPEYEAGRALGARLAEA-GYAVMTGGGPGVMEAANRGASESG----GYSIG--------- 132
Query: 65 NFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
LP E L R+F ARK + + A + LPGG GTLDE+
Sbjct: 133 -LGIELPFEEGLNEWVDLGINFRYFFARKTMFVKYS--------QAFICLPGGFGTLDEL 183
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDS 175
FE L L+Q ++ + P+ V+ ++ L+D+L G + G +++ +V +L + D
Sbjct: 184 FEALTLVQTRKV-TRFPI---VLFGTEYWSGLVDWLRGTLQRSGKISEGDV-NLLHVTDD 238
Query: 176 NSEALSYL 183
EA+ +
Sbjct: 239 VEEAVQIV 246
>gi|297621107|ref|YP_003709244.1| hypothetical protein wcw_0872 [Waddlia chondrophila WSU 86-1044]
gi|297376408|gb|ADI38238.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
gi|337292368|emb|CCB90398.1| uncharacterized protein AF_1126 [Waddlia chondrophila 2032/99]
Length = 226
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTAS 64
+P+Y + ++ +IA +G GPG+M+A KGA + +G VG +
Sbjct: 52 NPYYNMAIDVAQKIAER-GFAVITGGGPGIMEAANKGA----QSIGSMSVGIGIDVPYEN 106
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+ + ++ L R+F RK I A A V LPGG+GTLDE FE + LIQ
Sbjct: 107 DTNRFIDPRYRLKFRYFFIRKVMFIRYA--------KACVFLPGGLGTLDEFFETVTLIQ 158
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFL 152
++I P P +M + ++ L+D+L
Sbjct: 159 TQKIK---PFPIYLMGTE-YWSGLIDWL 182
>gi|167644079|ref|YP_001681742.1| hypothetical protein Caul_0106 [Caulobacter sp. K31]
gi|167346509|gb|ABZ69244.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 273
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 19/142 (13%)
Query: 13 ELGGEI---ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
E GG I + D +G GPG+M+A +GA +AG P GF + + +PY
Sbjct: 92 ERGGAIHAAGEVRDNVIATGGGPGVMEAANRGAWEAGAPSVGFNITLPHEQQP----NPY 147
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ +F+ RK + A+R + A+V PGG GT DE+FEIL L Q ++
Sbjct: 148 ATPDLSFRFHYFAMRK---MHLAMRAN-----ALVVFPGGFGTFDELFEILTLRQTDK-A 198
Query: 130 SELPVPFLVMNYDSFYKKLLDF 151
+P+ V+ +++++ ++ F
Sbjct: 199 PRIPI---VLFDEAYWRSVIHF 217
>gi|323136016|ref|ZP_08071099.1| hypothetical protein CHP00730 [Methylocystis sp. ATCC 49242]
gi|322399107|gb|EFY01626.1| hypothetical protein CHP00730 [Methylocystis sp. ATCC 49242]
Length = 321
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 26/157 (16%)
Query: 7 HYLQSFELGGEIARLLDC------TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+Y + E G + DC +G GPG M+A +GA G P G + +
Sbjct: 144 YYDVAREFGALVGAACDCGAGRRIAIVTGGGPGAMEAANRGAFDVGAPSVGLNIALPREQ 203
Query: 61 WTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ +F+ RK H L+ A+VA PGG GT DE+FE
Sbjct: 204 FP----NPYVTPGLCFRFHYFAMRKLHFLLRA---------RALVAFPGGYGTFDELFET 250
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKL--LDFLGD 154
L L+Q +I P+P +++ ++F+++ +DFL D
Sbjct: 251 LTLVQTRKIA---PLPVVLVG-EAFWRRAFDVDFLVD 283
>gi|343477346|emb|CCD11795.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 324
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 88/185 (47%), Gaps = 33/185 (17%)
Query: 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGA------MQAGKPVG-GFKVGKEAGEWTA 63
SFE E L TT G GPG M+A KGA M G + F+VG
Sbjct: 162 SFEESTESFHDLIVTT--GGGPGFMEAANKGAASVPDVMTMGMGISLPFEVG-------- 211
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ Y+ +F RK ++ SC AVV PGG GT+DE+FE+L L
Sbjct: 212 --LNQYVTPGLAFQFHYFFTRKFWMMY------SCR--AVVIAPGGFGTMDEVFELLTLR 261
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++I V F V F++ ++++ D+GT++K+EV SL DS EAL ++
Sbjct: 262 QTQKIHKFPIVLFCV----KFWRTVVNWEALV-DYGTISKEEVDSLC-FTDSVDEALLFI 315
Query: 184 AEFYD 188
F++
Sbjct: 316 RNFFE 320
>gi|385331063|ref|YP_005885014.1| hypothetical protein HP15_1322 [Marinobacter adhaerens HP15]
gi|311694213|gb|ADP97086.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
Length = 297
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSA 83
T +G GPG+M+A +GA G G + ++ +PY+ + +F+
Sbjct: 141 VTMVTGGGPGIMEAANRGAFDVGAKSVGLNITLPHEQFP----NPYITPDLCFRFHYFAM 196
Query: 84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
RK + A A+VA PGG GTLDE+FE L L+Q I P+P +++ +S
Sbjct: 197 RKLHFLKRA--------KALVAFPGGYGTLDELFETLTLVQTRTIA---PLPIVLVG-ES 244
Query: 144 FYKKL--LDFL 152
F+++ +DFL
Sbjct: 245 FWRQAVNIDFL 255
>gi|440225377|ref|YP_007332468.1| decarboxylase family protein [Rhizobium tropici CIAT 899]
gi|440036888|gb|AGB69922.1| decarboxylase family protein [Rhizobium tropici CIAT 899]
Length = 290
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA + G P G + + A N Y+ E +F+ RK + A
Sbjct: 150 MEAGNRGAAEEGAPSIGLNIVLPHEQ--APN--AYVTPELSFNFHYFAIRKMHFMVRA-- 203
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
A+ PGG GTLDE+FE L LIQ R+ LP L++ + F++ +++F
Sbjct: 204 ------KAIAVFPGGFGTLDELFECLTLIQTGRM-ERLP---LILFGEKFWRNIINFEAL 253
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
E +GT+A D+V +L D+ EA +A+FY+
Sbjct: 254 AE-FGTIAPDDV-NLISFVDTADEAWKIVADFYE 285
>gi|307726558|ref|YP_003909771.1| hypothetical protein BC1003_4548 [Burkholderia sp. CCGE1003]
gi|407710076|ref|YP_006793940.1| hypothetical protein BUPH_06567 [Burkholderia phenoliruptrix
BR3459a]
gi|307587083|gb|ADN60480.1| Conserved hypothetical protein CHP00730 [Burkholderia sp. CCGE1003]
gi|407238759|gb|AFT88957.1| hypothetical protein BUPH_06567 [Burkholderia phenoliruptrix
BR3459a]
Length = 247
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 59 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 114
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 115 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 156
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F++ LL F G + ++ L ++
Sbjct: 157 DELAEVLTLIQTKK---SRHVPIILVGAE-FWEGLLAWFKNSLTPMGLINPTDI-DLMQV 211
Query: 173 CDSNSEALSYLAEFYD 188
D + L + +FY+
Sbjct: 212 IDDPDQVLEAVLKFYE 227
>gi|253995783|ref|YP_003047847.1| hypothetical protein Mmol_0410 [Methylotenera mobilis JLW8]
gi|253982462|gb|ACT47320.1| conserved hypothetical protein [Methylotenera mobilis JLW8]
Length = 242
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 38/207 (18%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD P+Y EL +IAR L SG GPG+M+A KGA P G +
Sbjct: 59 PDSPYY----ELTVDIARRLSDAGFAVISGGGPGIMEAANKGAFAGKSPSIGLNIELPHE 114
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ N +PY + + F RK + A +A V +PGG GTLDE+ E
Sbjct: 115 Q----NANPYQDISQ--NFKHFFMRKVMFVKYA--------SAYVVMPGGFGTLDELMEA 160
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS----LWKICDS 175
+ L+Q G L +P +++ + F++ L+D++ V +D +++ L ++ D
Sbjct: 161 ITLVQ---TGKTLRIP-IILVCEPFWRGLVDWVKTT----LVNEDMISTSDLDLIQMIDD 212
Query: 176 NSEALSYLAEFYD-----LSSIDKRVH 197
E + + + Y+ LS+ ++R+
Sbjct: 213 PEEIVQAIFKHYETRGFKLSAEEERIQ 239
>gi|403715650|ref|ZP_10941334.1| hypothetical protein KILIM_030_00600 [Kineosphaera limosa NBRC
100340]
gi|403210579|dbj|GAB96017.1| hypothetical protein KILIM_030_00600 [Kineosphaera limosa NBRC
100340]
Length = 296
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 29/205 (14%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG 59
GPD P+Y ++G + + +G GPG M+A KGA +AG VG G ++ E G
Sbjct: 75 GPDDPNYALGEQVGAALVKA-GYAVITGGGPGSMEAANKGAAEAGGTSVGLGIELPFEQG 133
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ Y+ + + R+F RK + A + LPGG GT DE+FE
Sbjct: 134 ------LNEYVHIG--VNFRYFFIRKTMFVKYA--------QGFIVLPGGFGTFDELFEA 177
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSE 178
+ L+Q ++ + P+ + +Y + L+D+L D GT++ ++ L + D
Sbjct: 178 MTLVQTRKV-TRFPIVLIGSDY---WAGLIDWLRTTVLDRGTISPHDL-DLLHVTDDVDH 232
Query: 179 ALSYL----AEFYDLSSIDKRVHEV 199
A+ + +E D ++ +R EV
Sbjct: 233 AVQLIKDAGSELADQAAAQERAEEV 257
>gi|417858753|ref|ZP_12503810.1| hypothetical protein Agau_C101591 [Agrobacterium tumefaciens F2]
gi|338824757|gb|EGP58724.1| hypothetical protein Agau_C101591 [Agrobacterium tumefaciens F2]
Length = 288
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA G P G + + A N PY+ E +F+ RK + A
Sbjct: 152 MEAGNRGAADVGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 205
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ + F++ +++F
Sbjct: 206 ------KAVVIFPGGFGTLDELFEALTLIQTKRME---PIP-LILFGEKFWRSVINF-EF 254
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
D+GT+A +++ SL ++ +A ++E Y+
Sbjct: 255 LADFGTIAPEDM-SLLHFAETADDAWRVISEHYE 287
>gi|78188278|ref|YP_378616.1| hypothetical protein Cag_0297 [Chlorobium chlorochromatii CaD3]
gi|78170477|gb|ABB27573.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 240
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+ Y + ELG +AR +G GPG+M+A KGA +AG GF + +
Sbjct: 64 PESKEYQLAEELGELLARE-GFAVITGGGPGIMEAGNKGAQKAGGVSIGFNIKLPEQQ-- 120
Query: 63 ASNFHP--YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
HP Y+ E L +F RK + A A +ALPGG GTLDE+ E +
Sbjct: 121 ----HPNHYIDQEKLLHFDYFFVRKMMFLKYA--------QAFIALPGGFGTLDEVSEAI 168
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSE 178
ALIQ G P +++ SF++ D++ E+ G + ++ ++ + D E
Sbjct: 169 ALIQ---TGKSERFPIILVG-KSFWQGFYDWIRQTLLEEKGYINTFDLDFIY-LEDDPKE 223
Query: 179 ALSYLAEFY 187
++ + FY
Sbjct: 224 VVAIITRFY 232
>gi|423315996|ref|ZP_17293901.1| TIGR00730 family protein [Bergeyella zoohelcum ATCC 43767]
gi|405585001|gb|EKB58841.1| TIGR00730 family protein [Bergeyella zoohelcum ATCC 43767]
Length = 252
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 16/158 (10%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A KGA QAG G +G +F+PY+ + +F RK + +
Sbjct: 107 MEAGNKGAKQAG----GKSIGLNIELPFEQHFNPYIDKHYSMDFNYFFVRKVMFVKYS-- 160
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
V +PGG GTLDE+ E L LIQ +I + P+ ++ F+ LLD+ D
Sbjct: 161 ------QGFVVMPGGFGTLDELSEALTLIQTFKI-ARFPI---ILVGSEFWCGLLDWFKD 210
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSI 192
+ +E L+++ D+ EA++++ FYD SI
Sbjct: 211 TLLQQKMISEEDLHLFRVVDTAEEAVAHIKAFYDKYSI 248
>gi|110677598|ref|YP_680605.1| hypothetical protein RD1_0190 [Roseobacter denitrificans OCh 114]
gi|109453714|gb|ABG29919.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 278
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 18/164 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G + + S Y+ E +F+ RK
Sbjct: 126 TGGGPGVMEAGNRGALDAGGRSIGLNIVLPHEQAPNS----YVTPELCFNFHYFAIRKMH 181
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A +A+ PGG GTLDE+FE L LIQ R+ PVP L+ F+
Sbjct: 182 FLMRA--------SAICVFPGGFGTLDELFEALTLIQTGRMQ---PVPVLLFGR-KFWDS 229
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191
++++ D GT++ +++ L+ +S +EA+ + + D+ +
Sbjct: 230 IINW-DALADAGTISAEDL-ELFSFVESAAEAMEIIDRWQDMPT 271
>gi|332188559|ref|ZP_08390278.1| putative lysine decarboxylase family protein [Sphingomonas sp. S17]
gi|332011403|gb|EGI53489.1| putative lysine decarboxylase family protein [Sphingomonas sp. S17]
Length = 295
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ L +F+ RK H
Sbjct: 143 SGGGPSIMEAANRGAHDVGAESVGLNIVLPHEQ--APN--PYVTPSLSLQFHYFALRKMH 198
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ A PGG GT DE+FE+L LIQ +I P+P L+ +F++
Sbjct: 199 FLLHA---------RALAAFPGGFGTFDELFELLTLIQTGKIQ---PIPVLLFG-RAFWE 245
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
++++F E+ G V++ ++ ++ ++ EA + FY+
Sbjct: 246 RVVNFEALVEE-GVVSERDLG-IFTYVETAEEAWDVVRNFYE 285
>gi|379335229|gb|AFD03216.1| hypothetical protein [uncultured bacterium W4-21b]
Length = 345
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 23/187 (12%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK-VGKEAGEWTAS 64
P Y + + EIAR D +GA G+M+A GA GG K G
Sbjct: 94 PEYRMAKKFSREIARK-DFMVITGAASGIMEAANAGA-------GGTKSFGVNIRLPFEQ 145
Query: 65 NFHPYLPL-ETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ E +T ++F RK + + A+ PGG GT DE FE+L LI
Sbjct: 146 EPNPYISDDEKLITFKYFFTRKLIFVK--------ESDAIALFPGGFGTQDEAFEVLTLI 197
Query: 124 QLERIGSELPVPFLVMNY--DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
Q G P+P +++ +++ L FL G ++ L+KI DS EA++
Sbjct: 198 Q---TGKSEPLPIVMLEQPGRPYWRPWLRFLKQQVLGGGYISEDDFHLFKITDSIEEAVT 254
Query: 182 YLAEFYD 188
+ FY+
Sbjct: 255 EITHFYE 261
>gi|383640684|ref|ZP_09953090.1| hypothetical protein SeloA3_02604 [Sphingomonas elodea ATCC 31461]
Length = 291
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ + +F+ RK H
Sbjct: 142 SGGGPSIMEAANRGAQDVGAETIGLNIVLPHEQ--APN--PYVTPGLSMQFHYFALRKMH 197
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ AV PGG GT DE FE+L LIQ ++ P+P L + F+
Sbjct: 198 FLLHA---------RAVAVFPGGFGTFDESFELLTLIQTGKVD---PIPVLFYGKE-FWN 244
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++++F C D G ++ ++ +L++ C++ E + +F+
Sbjct: 245 RVVNFEALC-DEGVISPRDL-NLFRFCETAEEGWEIVQDFW 283
>gi|170691110|ref|ZP_02882276.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
gi|323529236|ref|YP_004231388.1| hypothetical protein BC1001_4946 [Burkholderia sp. CCGE1001]
gi|170144359|gb|EDT12521.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
gi|323386238|gb|ADX58328.1| Conserved hypothetical protein CHP00730 [Burkholderia sp. CCGE1001]
Length = 218
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 30 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 85
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 86 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 127
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F++ LL F G + ++ L ++
Sbjct: 128 DELAEVLTLIQTKK---SRHVPIILVGAE-FWEGLLAWFKNSLTPMGLINPTDI-DLMQV 182
Query: 173 CDSNSEALSYLAEFYD 188
D + L + +FY+
Sbjct: 183 IDDPDQVLEAVLKFYE 198
>gi|443671990|ref|ZP_21137086.1| putative uncharacterized protein [Rhodococcus sp. AW25M09]
gi|443415353|emb|CCQ15424.1| putative uncharacterized protein [Rhodococcus sp. AW25M09]
Length = 262
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 27/153 (17%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG-- 59
DHP Y ++ +LG +A+ +G GPG M+ +GA +A G +G G ++ E G
Sbjct: 97 DHPEYARARQLGAALAQE-GFAVITGGGPGAMEGANRGACEADGYSIGLGIELPFEQGLN 155
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
EW ++ + R+F RK + + A V LPGG GTLDE+FE
Sbjct: 156 EW----------VDLGVNFRYFFVRKTMFVKYS--------QAFVCLPGGFGTLDELFEA 197
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ P +++ D F+ LLD++
Sbjct: 198 LTLVQTAKV---TKFPIVLLGKD-FWSGLLDWI 226
>gi|403725736|ref|ZP_10946748.1| hypothetical protein GORHZ_123_00230 [Gordonia rhizosphera NBRC
16068]
gi|403204858|dbj|GAB91079.1| hypothetical protein GORHZ_123_00230 [Gordonia rhizosphera NBRC
16068]
Length = 274
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 37/185 (20%)
Query: 10 QSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWT 62
+ FELG + L + +G GPG M+A +GA ++G G + + EW
Sbjct: 106 EEFELGIRLGWALGEAGYAVITGGGPGAMEAANRGAWESGTKSIGLNIELPFEQHLNEWV 165
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ H R+F RK + A A V LPGG GTLDEMFE L L
Sbjct: 166 DTGMH----------FRYFFVRKTMFVKYA--------QAFVCLPGGFGTLDEMFEALTL 207
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS----LWKICDSNSE 178
+Q +++ P+ + N+ + L+D++ D +AK +++ L + D SE
Sbjct: 208 VQTKKV-VRFPIVLIGRNH---WSGLIDWMRDV----LLAKRMISADDLDLLHVVDEPSE 259
Query: 179 ALSYL 183
A+ +
Sbjct: 260 AVEII 264
>gi|389582512|dbj|GAB65250.1| lysine decarboxylase, partial [Plasmodium cynomolgi strain B]
Length = 343
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 25/160 (15%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWTASNFHPYLPLETYLTCRFFSA 83
+G GPG M+A KG+ +A GF + K A ++ N +F
Sbjct: 191 TGGGPGFMEAANKGSREANGRSLGFMISLPFEKGANQYVDQNLS--------FKFHYFFT 242
Query: 84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
RK L+ ++ A + LPGG GTLDE+ EIL L Q ++ +P+ ++
Sbjct: 243 RKFWLVYLSL--------AFIILPGGFGTLDELMEILTLKQCKKFKRNVPI---ILFGKE 291
Query: 144 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
F+ +L+F ++G ++++++ S++ + D EA +Y+
Sbjct: 292 FWSSILNF-KKLAEYGLISQEDLDSIF-LTDCIEEAYNYV 329
>gi|295700820|ref|YP_003608713.1| hypothetical protein [Burkholderia sp. CCGE1002]
gi|295440033|gb|ADG19202.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
Length = 247
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 59 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 114
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 115 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 156
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F++ LL F G + ++ L ++
Sbjct: 157 DELAEVLTLIQTKK---SRHVPIILVGAE-FWEGLLAWFKSSLIPMGLINPTDI-DLMQV 211
Query: 173 CDSNSEALSYLAEFYD 188
D+ + L + +FY+
Sbjct: 212 IDNPDQVLEAVLKFYE 227
>gi|354615037|ref|ZP_09032850.1| Conserved hypothetical protein CHP00730 [Saccharomonospora
paurometabolica YIM 90007]
gi|353220604|gb|EHB85029.1| Conserved hypothetical protein CHP00730 [Saccharomonospora
paurometabolica YIM 90007]
Length = 289
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y E+G +A +G GPG M+AV +GA +AG G +G
Sbjct: 118 DDPEYQTGREIGAALANAGFAAI-TGGGPGAMEAVNRGASEAG----GLSIGLGIELPHE 172
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ L + R+F ARK I + A + LPGG GTLDE+FE L L+
Sbjct: 173 QGINAWVDLG--VNFRYFFARKTMFIKYS--------QAFICLPGGFGTLDELFEALTLV 222
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q +++ ++ PV V+ +++K L +++ D + A+L + D +A+ +
Sbjct: 223 QTKKV-TKFPV---VLFGSTYWKGLYEWVRDTVLAEGKVSEREAALLHVTDDIDDAVGVV 278
Query: 184 AEFY 187
E Y
Sbjct: 279 MEAY 282
>gi|345875805|ref|ZP_08827594.1| methionyl-tRNA formyltransferase [Neisseria weaveri LMG 5135]
gi|417956896|ref|ZP_12599830.1| methionyl-tRNA formyltransferase [Neisseria weaveri ATCC 51223]
gi|343968503|gb|EGV36731.1| methionyl-tRNA formyltransferase [Neisseria weaveri LMG 5135]
gi|343969642|gb|EGV37852.1| methionyl-tRNA formyltransferase [Neisseria weaveri ATCC 51223]
Length = 243
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP YL + L +++ + SG GPG+M+A KGA P G + +
Sbjct: 60 DHPEYLFTESLSRKLSDA-GFSVISGGGPGIMEAANKGAFAGKSPAVGLNIVLPHEQ--- 115
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY L + + F RK + AV A V +PGG GTLDE+FE L L+
Sbjct: 116 -KANPYQDLS--VKFQHFFPRKVMFVKHAV--------AYVVMPGGFGTLDELFESLTLV 164
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q + P +++ +F++ LL+++ + + E L ++ D E + ++
Sbjct: 165 QTGKT----PKRPIILVGTAFWQGLLEWIKEQLLGNRLISPEDMDLIRLIDDEDEIIEHI 220
Query: 184 AEFYD 188
Y+
Sbjct: 221 FAHYE 225
>gi|340794829|ref|YP_004760292.1| hypothetical protein CVAR_1868 [Corynebacterium variabile DSM
44702]
gi|340534739|gb|AEK37219.1| hypothetical protein CVAR_1868 [Corynebacterium variabile DSM
44702]
Length = 238
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 35/159 (22%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGK-PVG-GFKVGKEA 58
DHP Y LG + RLL + +G GPGLM+A +G +AG VG G ++ E
Sbjct: 68 DHPWY----RLGVDTGRLLHEAGYAVITGGGPGLMEAANRGCSEAGGLSVGLGIELPHEQ 123
Query: 59 G--EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
G EW + L R+F RK + A A + LPGG GTLDE+
Sbjct: 124 GLNEW----------VNLGLNFRYFFVRKTMFVKYA--------QAFICLPGGFGTLDEL 165
Query: 117 FEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLD 150
FE L L+Q ++ SE P+ + +Y D ++LD
Sbjct: 166 FEALVLVQTGKV-SEFPIILVGTDYWGGLVDWIRSRMLD 203
>gi|163867373|ref|YP_001608567.1| hypothetical protein Btr_0076 [Bartonella tribocorum CIP 105476]
gi|161017014|emb|CAK00572.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 289
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA G P G + + +PY+ +F RK H
Sbjct: 145 TGGGPGIMEAGNRGACDVGAPTVGLNIILPHEQEP----NPYVSPHLCFNFHYFGMRKMH 200
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GTLDE+FE L LIQ R+ VP L+ + F+
Sbjct: 201 FLVRAK---------ALAIFPGGFGTLDELFETLTLIQTGRMKQ---VPILLFGKE-FWS 247
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++F GT++ ++ +L K ++ +EA + FY L
Sbjct: 248 NTINF-EYLASQGTISPADI-NLVKFVNTAAEAFEEIRSFYKL 288
>gi|409123886|ref|ZP_11223281.1| hypothetical protein GCBA3_10818 [Gillisia sp. CBA3202]
Length = 229
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA AG G VG + +PY+ + L +F RK
Sbjct: 76 TGGGPGIMEAGNKGAHLAG----GTSVGLNIELPFEQHDNPYIDQDKSLDFDYFFVRKVM 131
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----D 142
+ + V +PGG GTLDE+FE + LIQ +I + P+ + Y D
Sbjct: 132 FVKYS--------QGFVVMPGGFGTLDELFEAITLIQTNKI-DKFPIILVGTEYWGGLID 182
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
LLD + D G + L + D+ E ++ L +FYD
Sbjct: 183 WIKTTLLDSFKNISD-GDI------DLLHVVDTEDEVIAILDDFYD 221
>gi|227875867|ref|ZP_03993993.1| Rossmann fold nucleotide-binding protein [Mobiluncus mulieris ATCC
35243]
gi|269977502|ref|ZP_06184474.1| lysine decarboxylase family protein [Mobiluncus mulieris 28-1]
gi|306819148|ref|ZP_07452862.1| methionyl-tRNA formyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307700012|ref|ZP_07637061.1| TIGR00730 family protein [Mobiluncus mulieris FB024-16]
gi|227843615|gb|EEJ53798.1| Rossmann fold nucleotide-binding protein [Mobiluncus mulieris ATCC
35243]
gi|269934418|gb|EEZ90980.1| lysine decarboxylase family protein [Mobiluncus mulieris 28-1]
gi|304648124|gb|EFM45435.1| methionyl-tRNA formyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307614773|gb|EFN93993.1| TIGR00730 family protein [Mobiluncus mulieris FB024-16]
Length = 241
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 29/181 (16%)
Query: 12 FELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
++LG E+ + + +G GPGLM+A +KGA + G GF VG +
Sbjct: 77 YQLGEEVGKAFAEAGYAVITGGGPGLMEAASKGAHENG----GFSVGLGIELPHEQGMNQ 132
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ L + R+F RK + A A V LPGG GTLDE+FE + L+Q +I
Sbjct: 133 YVDLG--VEFRYFFVRKTMFVKYA--------QAFVVLPGGFGTLDELFEAITLVQTHKI 182
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKD----EVASLWKICDSNSEALSYLA 184
+ P+ + +Y + LL ++ D G VA+ E + ++ D+ +EA +
Sbjct: 183 -KQFPIVLVGKDY---WSGLLGWVRD----GLVAQGMVDLEETGIIQVVDTAAEAQRIVV 234
Query: 185 E 185
E
Sbjct: 235 E 235
>gi|300112965|ref|YP_003759540.1| hypothetical protein Nwat_0249 [Nitrosococcus watsonii C-113]
gi|299538902|gb|ADJ27219.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
Length = 271
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 14 LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
L E R + CT G GPG+M+A +GA +A G + E+ + Y+ E
Sbjct: 106 LSDEERRFVVCT---GGGPGIMEAANRGASEAKGMNIGLTISIPIEEFD----NLYITRE 158
Query: 74 TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP 133
+F RK A A++ PGG GTLDE+FE+L L+Q +I LP
Sbjct: 159 LSFHFHYFFMRKFWFAYLA--------KAIIVFPGGFGTLDELFELLTLMQTGKIRKHLP 210
Query: 134 VPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
+ ++ +++ ++++F + +D L+ DS +EA ++L + +I+
Sbjct: 211 I---ILFGKAYWNEVINFNALVQYSNIDPQD--LDLFYQTDSVNEAYAFLIDHLARYAIE 265
Query: 194 KR 195
+R
Sbjct: 266 ER 267
>gi|332293370|ref|YP_004431979.1| hypothetical protein Krodi_2736 [Krokinobacter sp. 4H-3-7-5]
gi|332171456|gb|AEE20711.1| Conserved hypothetical protein CHP00730 [Krokinobacter sp.
4H-3-7-5]
Length = 229
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD+ +Y + E+ +IA +G GPG+M+A +GA AG G VG
Sbjct: 52 PDNKYYKLATEVAEKIANN-GYGVITGGGPGIMEAGNRGAHLAG----GTSVGLNIELPF 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 107 EQHDNPYIDSDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITL 158
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEAL 180
IQ +I + P+ ++ F+ L+D++ + + ++ ++ L + D++ E +
Sbjct: 159 IQTHKI-QKFPI---ILVGTEFWGGLMDWVKTTLLDSFQNISAGDM-DLIHLVDTSDEVI 213
Query: 181 SYLAEFYD 188
L FYD
Sbjct: 214 EVLNNFYD 221
>gi|257054696|ref|YP_003132528.1| hypothetical protein Svir_06300 [Saccharomonospora viridis DSM
43017]
gi|256584568|gb|ACU95701.1| conserved hypothetical protein, DprA/Smf-related, family 2
[Saccharomonospora viridis DSM 43017]
Length = 260
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 35/192 (18%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y ++G +A + +G GPG M+AV +GA +AG G VG
Sbjct: 89 DHPEYELGRKIGAALAEI-GFAVITGGGPGTMEAVNRGASEAG----GLSVG-------- 135
Query: 64 SNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
LP E L R+F RK I + A + LPGG GTLDE
Sbjct: 136 --LGIELPFEQGLNRWVDLGVNFRYFFTRKTMFIKYS--------QAFICLPGGFGTLDE 185
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L L+Q +++ ++ PV V+ ++ L +++ D + L + D
Sbjct: 186 LFEALTLVQTKKV-TKFPV---VLFGSKYWGGLYEWVRDTMLAEGKINERDLRLLHVTDD 241
Query: 176 NSEALSYLAEFY 187
EA+ + E Y
Sbjct: 242 IDEAVGVVKEAY 253
>gi|240014960|ref|ZP_04721873.1| hypothetical protein NgonD_10035 [Neisseria gonorrhoeae DGI18]
gi|240017408|ref|ZP_04723948.1| hypothetical protein NgonFA_09653 [Neisseria gonorrhoeae FA6140]
gi|240122029|ref|ZP_04734991.1| hypothetical protein NgonPI_09745 [Neisseria gonorrhoeae PID24-1]
gi|268597646|ref|ZP_06131813.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268599897|ref|ZP_06134064.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268682953|ref|ZP_06149815.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|291042918|ref|ZP_06568659.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|268551434|gb|EEZ46453.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268584028|gb|EEZ48704.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268623237|gb|EEZ55637.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|291013352|gb|EFE05318.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 210
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHTDYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIALPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + ASL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGMISEGAASLFSISDDEDEIIAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|254494586|ref|ZP_05107757.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268595614|ref|ZP_06129781.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268602232|ref|ZP_06136399.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268685118|ref|ZP_06151980.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|385336551|ref|YP_005890498.1| hypothetical protein NGTW08_1678 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226513626|gb|EEH62971.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268549003|gb|EEZ44421.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268586363|gb|EEZ51039.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268625402|gb|EEZ57802.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|317165094|gb|ADV08635.1| hypothetical protein NGTW08_1678 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 210
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
DH Y + L RL D SG GPG+M+A KGA AGK V VG
Sbjct: 42 DHADYAFACRLA---RRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIALP 94
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY + L F+ RK + A V +PGG GTLDE+FEIL
Sbjct: 95 HEQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILT 144
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q G P P +++ +F+ L +++ + + ASL+ I D E ++
Sbjct: 145 LVQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGMISEGAASLFSISDDEDEIIA 200
Query: 182 YLAE 185
YL+E
Sbjct: 201 YLSE 204
>gi|404257626|ref|ZP_10960950.1| hypothetical protein GONAM_09_00040 [Gordonia namibiensis NBRC
108229]
gi|403403699|dbj|GAB99359.1| hypothetical protein GONAM_09_00040 [Gordonia namibiensis NBRC
108229]
Length = 274
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 25/158 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD P Y LG + R L + +G GPG M+A +GA +AG G +
Sbjct: 90 LKPDSPEY----ALGVRVGRALGEAGYAVITGGGPGAMEAANQGAHEAGAQSIGLNIELP 145
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +P++ L + R+F RK + A A V LPGG+GTLDE+F
Sbjct: 146 FEQ----GLNPWVDLG--MNFRYFFVRKTMFVKYA--------QAFVCLPGGMGTLDELF 191
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E L L+Q +++ + P +++ D F+ LLD++ D
Sbjct: 192 EALTLVQTKKV---VRFPIVLVGSD-FWGGLLDWMRDV 225
>gi|335033105|ref|ZP_08526477.1| hypothetical protein AGRO_0447 [Agrobacterium sp. ATCC 31749]
gi|333795781|gb|EGL67106.1| hypothetical protein AGRO_0447 [Agrobacterium sp. ATCC 31749]
Length = 298
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA G P G + + A N PY+ E +F+ RK + A
Sbjct: 162 MEAGNRGAADVGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 215
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ ++F++ +++F
Sbjct: 216 ------KAVVVFPGGFGTLDELFEALTLIQTKRMA---PIP-LILFGENFWRSVVNF-EF 264
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
++GT+A +++ L ++ +A ++E+Y+
Sbjct: 265 LANFGTIAPEDM-DLLHFAETADDAWKIISEYYE 297
>gi|405979633|ref|ZP_11037976.1| TIGR00730 family protein [Actinomyces turicensis ACS-279-V-Col4]
gi|404392049|gb|EJZ87110.1| TIGR00730 family protein [Actinomyces turicensis ACS-279-V-Col4]
Length = 242
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 25/180 (13%)
Query: 4 DHPHYLQSFELGGEIA-RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
+ PH+ ++E+G +A R + T G GPG M+A KGA AG G +G
Sbjct: 79 NDPHWAAAYEIGRMLAERGIGVIT--GGGPGAMEAANKGAWDAG----GTSIGLGIELPH 132
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+P++ + + R+F ARK + + + +PGG GT+DE+FE + L
Sbjct: 133 EQALNPWITVG--INFRYFFARKTMFVKYS--------QGFIVMPGGFGTMDELFEAMTL 182
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLL--DFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
+Q ++GS P+ + Y S + +G+ GT++ +++ L KI D +EA+
Sbjct: 183 VQTRKVGS-FPIVLVGTEYWSGLIAWIREKMIGE----GTISPEDI-DLVKIVDDPAEAV 236
>gi|212692520|ref|ZP_03300648.1| hypothetical protein BACDOR_02016 [Bacteroides dorei DSM 17855]
gi|265752687|ref|ZP_06088256.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212664931|gb|EEB25503.1| TIGR00730 family protein [Bacteroides dorei DSM 17855]
gi|263235873|gb|EEZ21368.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 195
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 12 FELGGEIARLL---DCTTWSGAG-PGLMDAVTKGAMQAGKPVGG----FKVGKEAGEWTA 63
F++ E+ RLL +GAG GLM A + ++AG V G F V E G W
Sbjct: 22 FDVAEELGRLLAEKKINLINGAGCIGLMAATSDATLEAGGTVTGVIPHFMV--EQG-WHH 78
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ + ET RK + D + V+ALPGG GTL+E+ EI+
Sbjct: 79 TGLTRLIETET------MHERKRMMADLS--------DGVIALPGGCGTLEELLEIITWK 124
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
QL G L P +++N + FY LL+ L D + K+ A++WK+ + EA++ L
Sbjct: 125 QL---GLYLN-PIIILNINGFYDSLLEMLQRAVDENFMRKEH-AAIWKVASTAEEAINLL 179
>gi|124505407|ref|XP_001351445.1| lysine decarboxylase-like protein, putative [Plasmodium falciparum
3D7]
gi|23498203|emb|CAD49174.1| lysine decarboxylase-like protein, putative [Plasmodium falciparum
3D7]
Length = 338
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 25/160 (15%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWTASNFHPYLPLETYLTCRFFSA 83
+G GPG M+A KG+ +A GF + K A ++ N +F
Sbjct: 182 TGGGPGFMEAANKGSKEANGRSLGFMISLPFEKGANQYVDRNLS--------FKFHYFFT 233
Query: 84 RKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
RK LI ++ A + LPGG GTLDE+ EIL L Q ++ +P+ V+
Sbjct: 234 RKFWLIYLSL--------AFIVLPGGFGTLDELMEILTLKQCKKFKRNVPI---VLIGKD 282
Query: 144 FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
F+ +L+F ++G +++D++ ++ I D EA +++
Sbjct: 283 FWSGILNF-KKLAEYGLISQDDLNGIF-ITDCIDEAYNHV 320
>gi|187921422|ref|YP_001890454.1| hypothetical protein Bphyt_6789 [Burkholderia phytofirmans PsJN]
gi|187719860|gb|ACD21083.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
Length = 218
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 30 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 85
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 86 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 127
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F++ LL F G + ++ L ++
Sbjct: 128 DELAEVLTLIQTKKSRH---VPIILVGAE-FWEGLLTWFKNSLTPMGLINPTDM-DLMQV 182
Query: 173 CDSNSEALSYLAEFYD 188
D + L + +FY+
Sbjct: 183 IDDPDQVLEAVLKFYE 198
>gi|395237116|ref|ZP_10415219.1| lysine decarboxylase family protein [Turicella otitidis ATCC 51513]
gi|423351023|ref|ZP_17328675.1| TIGR00730 family protein [Turicella otitidis ATCC 51513]
gi|394487662|emb|CCI83307.1| lysine decarboxylase family protein [Turicella otitidis ATCC 51513]
gi|404386957|gb|EJZ82088.1| TIGR00730 family protein [Turicella otitidis ATCC 51513]
Length = 267
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 25/179 (13%)
Query: 10 QSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEWTAS 64
+ +ELG R L + +G GPGLM+A +GA +AG K VG G ++ E
Sbjct: 91 EYYELGRAAGRRLAEEKYAVVTGGGPGLMEAANRGAYEAGGKSVGLGIELPHE------D 144
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
+PY+ L L R+F RK + + LPGG GTLDE+FE+L ++Q
Sbjct: 145 ELNPYVGLG--LNFRYFFVRKVMFLKYT--------QGFICLPGGFGTLDELFEVLCMVQ 194
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++ ++ P+ L Y + L+D++ + + + L+ + DS EA+ Y+
Sbjct: 195 TGKV-TDYPMVLLDKEY---WGGLVDWIRERLVKENMIDETDPDLFLVTDSVDEAMDYI 249
>gi|111225444|ref|YP_716238.1| lysine decarboxylase [Frankia alni ACN14a]
gi|111152976|emb|CAJ64724.1| Lysine decarboxylase family protein [Frankia alni ACN14a]
Length = 319
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y Q LG +A +G GPG M+AV +GA +AG G VG
Sbjct: 141 DDPIYAQGRRLGAALAEA-GFAVITGGGPGAMEAVNRGAQEAG----GLSVG-------- 187
Query: 64 SNFHPYLPLETYL--------TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDE 115
LP E L + R+F RK + A A V LPGGVGTLDE
Sbjct: 188 --LGIELPFEQRLNDWVDLGVSFRYFFVRKTMFVKYA--------EAFVILPGGVGTLDE 237
Query: 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDS 175
+FE L L+Q ++ + PV V+ ++ L+ +L + K+ + I D
Sbjct: 238 LFEALTLVQTGKV-TRFPV---VLIGSEYWSGLVGWLRSTVLPAGLIKESDLHILAITDD 293
Query: 176 NSEALSYL 183
EA+ +
Sbjct: 294 VDEAVRII 301
>gi|89256736|ref|YP_514098.1| hypothetical protein FTL_1443 [Francisella tularensis subsp.
holarctica LVS]
gi|115315138|ref|YP_763861.1| hypothetical protein FTH_1404 [Francisella tularensis subsp.
holarctica OSU18]
gi|156502896|ref|YP_001428961.1| hypothetical protein FTA_1530 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254368038|ref|ZP_04984058.1| hypothetical protein FTHG_01355 [Francisella tularensis subsp.
holarctica 257]
gi|290953986|ref|ZP_06558607.1| hypothetical protein FtulhU_06843 [Francisella tularensis subsp.
holarctica URFT1]
gi|422939061|ref|YP_007012208.1| hypothetical protein FTS_1415 [Francisella tularensis subsp.
holarctica FSC200]
gi|423051107|ref|YP_007009541.1| hypothetical protein F92_08035 [Francisella tularensis subsp.
holarctica F92]
gi|89144567|emb|CAJ79882.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115130037|gb|ABI83224.1| possible Rossmann fold nucleotide-binding protein [Francisella
tularensis subsp. holarctica OSU18]
gi|134253848|gb|EBA52942.1| hypothetical protein FTHG_01355 [Francisella tularensis subsp.
holarctica 257]
gi|156253499|gb|ABU62005.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407294212|gb|AFT93118.1| hypothetical protein FTS_1415 [Francisella tularensis subsp.
holarctica FSC200]
gi|421951829|gb|AFX71078.1| hypothetical protein F92_08035 [Francisella tularensis subsp.
holarctica F92]
Length = 237
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 35/178 (19%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 82 TGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ------RPNQYQDIFLIYRYFFTRKAM 135
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ Y K
Sbjct: 136 FIKHSM--------SYIIMPGGFGTLDELFDITTLIQ---TGKKVKMPIIL------YGK 178
Query: 148 LLDFLGDCEDW--------GTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
DF G +W G ++++EV +L + DS E + +AE Y +++ + H
Sbjct: 179 --DFWGGLMEWIKTTLVGKGAISEEEV-NLLTLVDSIDETIEIIAEHY-MNTYSSKAH 232
>gi|440697550|ref|ZP_20879954.1| TIGR00730 family protein [Streptomyces turgidiscabies Car8]
gi|440280128|gb|ELP67919.1| TIGR00730 family protein [Streptomyces turgidiscabies Car8]
Length = 252
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA +A G VG G ++ E G
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGACEAKGVSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ + P+ V+ ++ L+D+L + A ++ L+ + D EA++
Sbjct: 189 LVQTQKV-TRFPI---VLFGSEYWGGLVDWLTNTLIAQGKASEKDLMLFHVTDDVDEAVA 244
Query: 182 YLAE 185
+++
Sbjct: 245 LVSK 248
>gi|293604244|ref|ZP_06686652.1| methionyl-tRNA formyltransferase [Achromobacter piechaudii ATCC
43553]
gi|292817469|gb|EFF76542.1| methionyl-tRNA formyltransferase [Achromobacter piechaudii ATCC
43553]
Length = 226
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ PHY + + +A +G GPG+M+A KGA +AG G +G
Sbjct: 47 NSPHYETTVAISAALAGA-GFAVIAGGGPGIMEAANKGAFEAG----GTSIGLNISLPHE 101
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
++ + Y + L+ +F +RK A VA+PGG GTLDE+FE L LI
Sbjct: 102 AHNNEYQTIS--LSFEYFFSRKATFF--------MHSFAYVAMPGGFGTLDELFEALTLI 151
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++ P P +++ + ++ ++++LGD + L+ I D + + +
Sbjct: 152 QTGKVP---PAPIVLVGSE-YWSGMVEWLGDQVLGNGMIGAHDLELFIIEDDPVKVVRRV 207
Query: 184 AEFYD 188
EF+D
Sbjct: 208 VEFHD 212
>gi|194099604|ref|YP_002002735.1| hypothetical protein NGK_2110 [Neisseria gonorrhoeae NCCP11945]
gi|193934894|gb|ACF30718.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
Length = 210
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
DH Y + L RL D SG GPG+M+A KGA AGK V VG
Sbjct: 42 DHADYAFACRLA---RRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIALP 94
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY + L F+ RK + A V +PGG GTLDE+FEIL
Sbjct: 95 HEQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILT 144
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q G P P +++ +F+ L +++ + + ASL+ I D E ++
Sbjct: 145 LVQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGMISEGAASLFSISDDEDEIIA 200
Query: 182 YLAE 185
YL+E
Sbjct: 201 YLSE 204
>gi|15887723|ref|NP_353404.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|15155284|gb|AAK86189.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 306
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA G P G + + A N PY+ E +F+ RK + A
Sbjct: 170 MEAGNRGAADVGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 223
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ ++F++ +++F
Sbjct: 224 ------KAVVVFPGGFGTLDELFEALTLIQTKRMA---PIP-LILFGENFWRSVVNF-EF 272
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
++GT+A +++ L ++ +A ++E+Y+
Sbjct: 273 LANFGTIAPEDM-DLLHFAETADDAWKIISEYYE 305
>gi|240849746|ref|YP_002971134.1| hypothetical protein Bgr_00700 [Bartonella grahamii as4aup]
gi|240266869|gb|ACS50457.1| hypothetical protein Bgr_00700 [Bartonella grahamii as4aup]
Length = 287
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE-TYLTCRFFSARKH 86
+G GPG+M+A +GA G P G + + S P+L YL R + H
Sbjct: 143 TGGGPGIMEAGNRGACDVGAPTIGLNIILPHEQEPNSYVSPHLCFNFHYLGMR----KMH 198
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GTLDE+FE L L+Q R+ VP L+ + F+
Sbjct: 199 FLVRAK---------ALAIFPGGFGTLDELFETLTLVQTGRMKQ---VPILLFGKE-FWS 245
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++F E GT++ +V + K ++ +EA + FY+L
Sbjct: 246 NTINFEYLSEQ-GTISPTDV-NFVKFVNTAAEAFEEIRSFYEL 286
>gi|254369592|ref|ZP_04985603.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122546|gb|EDO66681.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 237
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 35/178 (19%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA Q G + + P + +L R+F RK
Sbjct: 82 TGGGPGIMEAGNKGAQQGSCSSIGLNITLPHEQ------RPNQYQDIFLIYRYFFTRKAM 135
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
I ++ + + +PGG GTLDE+F+I LIQ G ++ +P ++ Y K
Sbjct: 136 FIKHSM--------SYIIMPGGFGTLDELFDITTLIQ---TGKKVKMPIIL------YGK 178
Query: 148 LLDFLGDCEDW--------GTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVH 197
DF G +W G ++++EV +L + DS E + +AE Y +++ + H
Sbjct: 179 --DFWGGLMEWIKTTLVGKGAISEEEV-NLLTLVDSIDETIEIIAEHY-MNTYSSKAH 232
>gi|229817798|ref|ZP_04448080.1| hypothetical protein BIFANG_03070 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785587|gb|EEP21701.1| hypothetical protein BIFANG_03070 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 246
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 25/180 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAGEW 61
D P Y + ++G IAR +G GPG+M+A +GA + G VG G ++ E G
Sbjct: 80 DSPFYRDAEQMGELIARR-GIAVITGGGPGIMEAGNRGAALTGGTSVGLGIELPHEQG-- 136
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ L +T R+F RK + + + ++ PGG GTLDE FEIL
Sbjct: 137 ----INDYVNLG--MTFRYFFVRKTMFVKYS--------SGIIVCPGGFGTLDETFEILT 182
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ + PV V+ ++++ L D+L G ++ G ++ + L I D EA+
Sbjct: 183 LVQTHKVDKK-PV---VLFGSAYWQGLFDWLNGPVKENGMISGVD-PQLVTITDDPEEAV 237
>gi|157375563|ref|YP_001474163.1| lysine decarboxylase family protein [Shewanella sediminis HAW-EB3]
gi|157317937|gb|ABV37035.1| lysine decarboxylase family [Shewanella sediminis HAW-EB3]
Length = 249
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD+ +Y ++ +L +A+ T +G GPG+M+A KGA + G + +
Sbjct: 66 PDNIYYEKAEQLARRLAQE-GFATITGGGPGIMEAGNKGANENQAKSVGLNIDLPMEQSP 124
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L R+F ARK + ++ V +PGG GT DE FE L L
Sbjct: 125 ----NPYQNIS--LNYRYFFARKVMFVKHSM--------GYVCMPGGFGTFDEFFEALTL 170
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q +I P+P ++ D F++ LLD++ + E L + D E +S
Sbjct: 171 LQTNKI---YPIPIVLYGTD-FWQGLLDWMAAQPLKHGLISPEDLELLTVTDDIEEVISI 226
Query: 183 LAE 185
+ +
Sbjct: 227 MVQ 229
>gi|410473539|ref|YP_006896820.1| hypothetical protein BN117_2993 [Bordetella parapertussis Bpp5]
gi|408443649|emb|CCJ50326.1| putative exported protein [Bordetella parapertussis Bpp5]
Length = 190
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 20/162 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA +AG G VG ++ + Y + L+ +F +RK
Sbjct: 33 AGGGPGIMEAANKGAFEAG----GTSVGLNISLPHEAHNNEYQTIS--LSFEYFYSRKAT 86
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A VA+PGG GTLDE+FE L LIQ ++ P P +++ + F+
Sbjct: 87 FF--------MHSMAYVAMPGGFGTLDELFEALTLIQTGKVP---PAPIVLVGSE-FWHG 134
Query: 148 LLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
L+D+L + G +A ++ +L+ I D ++ + + EF+D
Sbjct: 135 LVDWLDEQLLANGMIAAHDL-NLFIIEDDPAKVVRKVVEFHD 175
>gi|390577025|ref|ZP_10257065.1| hypothetical protein WQE_51235 [Burkholderia terrae BS001]
gi|420247668|ref|ZP_14751063.1| TIGR00730 family protein [Burkholderia sp. BT03]
gi|389931003|gb|EIM93091.1| hypothetical protein WQE_51235 [Burkholderia terrae BS001]
gi|398070562|gb|EJL61856.1| TIGR00730 family protein [Burkholderia sp. BT03]
Length = 247
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 35/195 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 59 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 114
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 115 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 156
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F+K LL F G + ++ +L ++
Sbjct: 157 DELAEVLTLIQTKK---SRHVPIILVGAE-FWKGLLGWFESQLVPMGLINPGDM-NLMQV 211
Query: 173 CDSNSEALSYLAEFY 187
D + L + FY
Sbjct: 212 IDDPDQVLEAVLAFY 226
>gi|209517785|ref|ZP_03266620.1| conserved hypothetical protein [Burkholderia sp. H160]
gi|209501731|gb|EEA01752.1| conserved hypothetical protein [Burkholderia sp. H160]
Length = 218
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 30 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 85
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 86 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 127
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F++ LL F G + ++ L ++
Sbjct: 128 DELAEVLTLIQTKK---SRHVPIILVGAE-FWEGLLAWFRSSLIPMGLINPTDI-DLMQV 182
Query: 173 CDSNSEALSYLAEFYD 188
D + L + +FY+
Sbjct: 183 IDDPDQVLEAVLKFYE 198
>gi|386821660|ref|ZP_10108876.1| TIGR00730 family protein [Joostella marina DSM 19592]
gi|386426766|gb|EIJ40596.1| TIGR00730 family protein [Joostella marina DSM 19592]
Length = 229
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 38/196 (19%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P+H +Y +L IA+ + + +G GPG+M+A KGA AG G VG
Sbjct: 52 PEHKYY----QLAENIAKKIVEAGYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNIE 103
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ + L +F RK + + V +PGG GTLDE+FE
Sbjct: 104 LPFEQHDNPYIDSDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEA 155
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV----AKDEVAS----LWK 171
+ LIQ ++I P +++ DF G DW A + ++ L K
Sbjct: 156 ITLIQTKKIAM---FPIILVG--------TDFWGGLMDWVKTTLLNANNNISEKDLDLIK 204
Query: 172 ICDSNSEALSYLAEFY 187
+ D+ E + L FY
Sbjct: 205 LVDTEDEVIEVLDAFY 220
>gi|59802033|ref|YP_208745.1| hypothetical protein NGO1712 [Neisseria gonorrhoeae FA 1090]
gi|293398074|ref|ZP_06642279.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|59718928|gb|AAW90333.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|291611337|gb|EFF40407.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 210
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
DH Y + L RL D SG GPG+M+A KGA AGK V VG
Sbjct: 42 DHADYAFACRLA---RRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIALP 94
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY + L F+ RK + A V +PGG GTLDE+FEIL
Sbjct: 95 HEQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILT 144
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q G P P +++ +F+ L +++ + + ASL+ I D E ++
Sbjct: 145 LVQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGMISEGAASLFSISDDEDEIIA 200
Query: 182 YLAE 185
YL+E
Sbjct: 201 YLSE 204
>gi|383650923|ref|ZP_09961329.1| hypothetical protein SchaN1_36548 [Streptomyces chartreusis NRRL
12338]
Length = 252
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 27/186 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG 59
D P Y LG L+D +G GPG M+A KGA++A G VG G ++ E G
Sbjct: 86 DSPEYDAGVRLG---RGLVDAGFAVITGGGPGAMEAANKGAVEASGISVGLGIELPFEQG 142
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+PY+ + L R+F RK + A V LPGG+GTLDE+FE
Sbjct: 143 ------LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEA 186
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q +++ + P+ V+ ++ L+D+L A ++ L+ + D EA
Sbjct: 187 LTLVQTQKV-TRFPI---VLFGSEYWGGLVDWLRRTVIAQGKAAEKDLLLFHVTDDVDEA 242
Query: 180 LSYLAE 185
++ +++
Sbjct: 243 VALVSK 248
>gi|427428376|ref|ZP_18918417.1| Decarboxylase family protein [Caenispirillum salinarum AK4]
gi|425882109|gb|EKV30791.1| Decarboxylase family protein [Caenispirillum salinarum AK4]
Length = 309
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 10 QSFELGGEIARLLD----------CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
+S+++ E RL+ +G GPG+M+A +GA G +
Sbjct: 125 RSYDVAREFGRLVSEHSQQPEARRYVVVTGGGPGIMEAANRGAHDVDAESIGLSIVLPHE 184
Query: 60 EWTASNFHPYLPLETYLTCRFFSARK-HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+ P L + +F+ RK H LI A+ PGG GTLDE+FE
Sbjct: 185 QAPNRYITPKLSFNFH----YFAVRKMHFLIRA---------EALACFPGGFGTLDELFE 231
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L LIQ +I P+P ++ N +++++KL++F E GT++ +++ + K ++ E
Sbjct: 232 ALTLIQTGKIE---PMPVILFN-EAWWRKLVNFDHLVES-GTISPEDL-KIMKFVETAEE 285
Query: 179 ALSYLAEFY 187
++ +FY
Sbjct: 286 GWRFILDFY 294
>gi|330817513|ref|YP_004361218.1| hypothetical protein bgla_1g26430 [Burkholderia gladioli BSR3]
gi|327369906|gb|AEA61262.1| hypothetical protein bgla_1g26430 [Burkholderia gladioli BSR3]
Length = 215
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 23/161 (14%)
Query: 6 PHYLQSFE-LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAGE 60
P ++++ + LG +AR + G GLM AV +GA+ AG VG F + +EA +
Sbjct: 31 PAFMEASQALGRALARARLKLVYGGGTTGLMGAVARGALDAGGEVGAVIPRFLIDREANQ 90
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ + F +T RKH + + R+D A VALPGG+GT++E+ EI+
Sbjct: 91 ASLTMFEDLTITDT------MHERKHRMFE---RSD-----AFVALPGGIGTVEEIVEIM 136
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
QL R P +++N F+ LL L + G +
Sbjct: 137 TWSQLGRHRK----PIVLVNTKGFWNPLLALLDHLREAGFI 173
>gi|297562827|ref|YP_003681801.1| hypothetical protein Ndas_3898 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847275|gb|ADH69295.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 261
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +Y ++G ++A T +G GPG+M+AV KGA QAG G VG
Sbjct: 78 PGNRYYDIGVQMGAKLAEA-GYATITGGGPGMMEAVNKGAQQAG----GLSVGLGIELPF 132
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ + Y+ + +T R+F RK + + A V LPGG GTLDE+FE L
Sbjct: 133 EQSLNDYVDIG--VTFRYFFVRKTMFVKYS--------QAFVVLPGGFGTLDELFEAATL 182
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q ++ + P+ V+ F+ + D++ + K L ++ D E +
Sbjct: 183 VQTNKV-TRFPI---VLVGTEFWGGMRDWIRSSLLENQLIKSHDMELVQVTDDLDEVVDI 238
Query: 183 L 183
+
Sbjct: 239 I 239
>gi|297202182|ref|ZP_06919579.1| lysine decarboxylase [Streptomyces sviceus ATCC 29083]
gi|197713621|gb|EDY57655.1| lysine decarboxylase [Streptomyces sviceus ATCC 29083]
Length = 252
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA +A G VG G ++ E G
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGACEAKGTSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ + P+ V+ ++ L+D+L + A ++ L+ + D EA++
Sbjct: 189 LVQTQKV-TRFPI---VLFGSEYWGGLVDWLKNTLIAQGKASEKDLLLFHMTDDVDEAVA 244
Query: 182 YLAE 185
+++
Sbjct: 245 LVSK 248
>gi|209966157|ref|YP_002299072.1| hypothetical protein RC1_2892 [Rhodospirillum centenum SW]
gi|209959623|gb|ACJ00260.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 268
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +AG P GF + + + P L + +F+
Sbjct: 118 DNVIATGGGPGIMEAANRGAWEAGAPTIGFNITLPHEQEPNAYSTPDL----TFSFHYFA 173
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A+R + A+V PGG GT DE+FEIL L Q G P ++ + D
Sbjct: 174 MRK---MHLAMRAN-----ALVVFPGGFGTFDELFEILTLTQ---TGKARRTPIVLFDKD 222
Query: 143 SFYKKLLDF 151
++ +L++F
Sbjct: 223 -YWTRLINF 230
>gi|359149207|ref|ZP_09182271.1| hypothetical protein StrS4_22462 [Streptomyces sp. S4]
Length = 255
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
GP+ Y ELG + +G GPG M+A KGA +AG G +G E
Sbjct: 73 GPESFEYQTGVELGKALVEA-GFAVITGGGPGAMEAANKGAREAGGVSVG--LGIELPFE 129
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
N H ++ + R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 130 QGLNRH----VDIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELFEALT 177
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS----LWKICDSNS 177
L+Q ++ + P+ V+ ++ L+D+L D VA+ + A+ L+ + D
Sbjct: 178 LVQTRKV-TRFPI---VLFGREYWSGLVDWLRDT----VVAQGKCAAKDLLLFHVTDDVE 229
Query: 178 EALSYLAE 185
EA++ + +
Sbjct: 230 EAVALVTK 237
>gi|91777302|ref|YP_552510.1| hypothetical protein Bxe_B2835 [Burkholderia xenovorans LB400]
gi|91689962|gb|ABE33160.1| Conserved hypothetical protein 730 [Burkholderia xenovorans LB400]
Length = 247
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 59 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 114
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 115 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 156
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F++ LL F G + ++ L ++
Sbjct: 157 DELAEVLTLIQTKKSRH---VPIILVGAE-FWEGLLAWFRNSLTPMGLINPADM-DLMQV 211
Query: 173 CDSNSEALSYLAEFYD 188
D + L + +FY+
Sbjct: 212 IDDPDQVLEAVLKFYE 227
>gi|183220422|ref|YP_001838418.1| putative Rossmann fold nucleotide-binding protein [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910535|ref|YP_001962090.1| rossmann fold nucleotide-binding protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167775211|gb|ABZ93512.1| Rossmann fold nucleotide-binding protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167778844|gb|ABZ97142.1| Putative Rossmann fold nucleotide-binding protein [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 254
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA +AG + + N +PY+ E +F RK
Sbjct: 101 TGGGPGIMEAGNRGAKEAGSKSVALNIVLPHEQ----NPNPYVNPELTFEFHYFFMRKLW 156
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ +C ++A PGG GT DE+FE L L+Q G + P+P L+ F+ +
Sbjct: 157 FMK------TC--RGMIAFPGGFGTFDELFETLTLVQ---TGKKSPIPILLYG-KKFWSE 204
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+++F E + +E L+ DS EAL + E
Sbjct: 205 VINFKKLAE--MRLISEEDLHLFGYADSPIEALRFFQE 240
>gi|409390889|ref|ZP_11242601.1| hypothetical protein GORBP_065_01650 [Gordonia rubripertincta NBRC
101908]
gi|403199266|dbj|GAB85835.1| hypothetical protein GORBP_065_01650 [Gordonia rubripertincta NBRC
101908]
Length = 277
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PD P Y LG + R L + +G GPG M A +GA +AG G +
Sbjct: 93 LKPDSPEY----ALGVRVGRALGEAGYAVITGGGPGAMQAANQGAHEAGAQSIGLNIELP 148
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +P++ L + R+F RK + A A V LPGG+GTLDE+F
Sbjct: 149 FEQ----GLNPWVDLG--MNFRYFFVRKTMFVKYA--------QAFVCLPGGMGTLDELF 194
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E L L+Q +++ + P +++ D F+ LLD++ D
Sbjct: 195 EALTLVQTKKV---VRFPIVLVGSD-FWGGLLDWMRDV 228
>gi|421891436|ref|ZP_16322238.1| conserved hypothetical protein [Ralstonia solanacearum K60-1]
gi|378963233|emb|CCF98986.1| conserved hypothetical protein [Ralstonia solanacearum K60-1]
Length = 194
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 80/194 (41%), Gaps = 28/194 (14%)
Query: 6 PHYLQS-FELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK----VGKEAGE 60
P Y S LG E+A + G GLM V +QAG+PV G V KE G
Sbjct: 16 PEYKASAIALGNEMAGRGLTLVYGGGNVGLMGIVADAVLQAGRPVIGIIPESLVRKEVGH 75
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ H RK + D A A +A+PGG+GT +E+FE
Sbjct: 76 KDLTELH---------IVDSMHQRKQMMADRA--------DAFIAMPGGIGTYEELFETF 118
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
+QL G P ++N FY KLL F+ D G + + A L + D + AL
Sbjct: 119 TWLQLGYHGK----PIGLLNVAGFYDKLLAFIDHAVDEGFLMRHH-ADLLHVSD-DPGAL 172
Query: 181 SYLAEFYDLSSIDK 194
L E ++DK
Sbjct: 173 IDLLERAPREAVDK 186
>gi|268316294|ref|YP_003290013.1| hypothetical protein Rmar_0727 [Rhodothermus marinus DSM 4252]
gi|262333828|gb|ACY47625.1| conserved hypothetical protein [Rhodothermus marinus DSM 4252]
Length = 247
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA +AG G VG +PY+ + + FF RK
Sbjct: 95 TGGGPGIMEAANKGAKEAG----GVSVGLNIVIPHEQESNPYIDRDKLINFDFFFVRKVM 150
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A + LPGG GT+DE+FE L LIQ G P ++M D ++
Sbjct: 151 FVKYA--------QGFIVLPGGFGTMDELFEALTLIQ---TGKASRFPVILMGTD-YWSG 198
Query: 148 LLDFL 152
LLD+L
Sbjct: 199 LLDWL 203
>gi|385206451|ref|ZP_10033321.1| TIGR00730 family protein [Burkholderia sp. Ch1-1]
gi|385186342|gb|EIF35616.1| TIGR00730 family protein [Burkholderia sp. Ch1-1]
Length = 242
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-- 55
+ P+ P+Y +L +IAR L SG GPG+M+A KGA P G +
Sbjct: 54 LKPNSPYY----KLATQIARKLSDAGFAVISGGGPGIMEAANKGAHAGKAPSVGLNIELP 109
Query: 56 --KEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
+ +W + L R F RK + + AV+ +PGG GTL
Sbjct: 110 HEQSGNQWQ----------DISLRFRHFFTRKVTFVK--------NSDAVIVMPGGFGTL 151
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKI 172
DE+ E+L LIQ ++ VP +++ + F++ LL F G + ++ L ++
Sbjct: 152 DELAEVLTLIQTKKSRH---VPIILVGAE-FWEGLLAWFRNSLTPMGLINPADM-DLMQV 206
Query: 173 CDSNSEALSYLAEFYD 188
D + L + +FY+
Sbjct: 207 IDDPDQVLEAVLKFYE 222
>gi|283783331|ref|YP_003374085.1| hypothetical protein HMPREF0424_0868 [Gardnerella vaginalis 409-05]
gi|283442143|gb|ADB14609.1| conserved hypothetical protein TIGR00730 [Gardnerella vaginalis
409-05]
Length = 266
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 23/151 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
D P Y + +G E+A+ +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 102 DDPEYSLARTMGSELAKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQG-- 158
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ L + R+F RK + + + ++ PGG GT+DEMFE L
Sbjct: 159 ----LNKWINLG--MQFRYFFVRKTMFMKYS--------SGIIVCPGGFGTMDEMFEALT 204
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++ + +PV V+ S++ L+D+L
Sbjct: 205 LVQTHKV-ARVPV---VLFGTSYWNGLIDWL 231
>gi|329945955|ref|ZP_08293642.1| TIGR00730 family protein [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328528403|gb|EGF55381.1| TIGR00730 family protein [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 251
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGE 60
P+ P Y + E+G +AR +G GPG+M+A +G +AG VG G ++ E G
Sbjct: 76 PEDPTYQVAAEIGAGLARA-GYAVITGGGPGMMEAANRGCHEAGGTSVGLGIELPHEQG- 133
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE L
Sbjct: 134 -----MNDYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGMGTLDELFEAL 178
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++I S P+ + Y + LL+++ + L + D EA+
Sbjct: 179 TLVQTQKI-SSFPIALVDSGY---WGGLLEWVRTAMIERGMISPADPDLLHVVDDAGEAV 234
Query: 181 SYL 183
Y+
Sbjct: 235 DYV 237
>gi|149913270|ref|ZP_01901804.1| acetyl-CoA acetyltransferase [Roseobacter sp. AzwK-3b]
gi|149813676|gb|EDM73502.1| acetyl-CoA acetyltransferase [Roseobacter sp. AzwK-3b]
Length = 273
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 34/168 (20%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKV----GKEAGEWTAS----NFHPYLPLETYLTCR 79
+G GPG+M+A +GA+ AG G + + E+ NFH
Sbjct: 128 TGGGPGVMEAGNRGAVDAGGASIGLNIVLPHEQAPNEYVTPGLCFNFH------------ 175
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F RK + A A+ PGG GTLDEMFE L LIQ +R+ VPFL+
Sbjct: 176 YFGIRKMHFLMRA--------KAICVFPGGFGTLDEMFEALTLIQTDRMTK---VPFLLF 224
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+ F+++++++ D GT++ +++ L++ ++ +A+ + +Y
Sbjct: 225 G-EEFWRRIINWEA-LADAGTISPEDL-DLFRFVETAKDAVEIIDAWY 269
>gi|421740625|ref|ZP_16178871.1| TIGR00730 family protein [Streptomyces sp. SM8]
gi|406690971|gb|EKC94746.1| TIGR00730 family protein [Streptomyces sp. SM8]
Length = 263
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
GP+ Y ELG + +G GPG M+A KGA +AG G +G E
Sbjct: 81 GPESFEYQTGVELGKALVEA-GFAVITGGGPGAMEAANKGAREAGGVSVG--LGIELPFE 137
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
N H ++ + R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 138 QGLNRH----VDIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELFEALT 185
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVAS----LWKICDSNS 177
L+Q ++ + P+ V+ ++ L+D+L D VA+ + A+ L+ + D
Sbjct: 186 LVQTRKV-TRFPI---VLFGREYWSGLVDWLRDT----VVAQGKCAAKDLLLFHVTDDVE 237
Query: 178 EALSYLAE 185
EA++ + +
Sbjct: 238 EAVALVTK 245
>gi|409100057|ref|ZP_11220081.1| hypothetical protein PagrP_17198 [Pedobacter agri PB92]
Length = 235
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH-PYLPLETYLTCRFFSARKH 86
+G GPG+M+A KGA G G + E FH Y+ L +F RK
Sbjct: 82 TGGGPGIMEAGNKGAYSNGGKSVGLNI-----ELPFEQFHNKYIDHNKLLEFDYFFVRKV 136
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
+ + V LPGG GT+DE+FE L LIQ +I + P+ L +Y +
Sbjct: 137 MFMKYS--------QGFVVLPGGFGTMDELFEALTLIQTGKI-ARFPIVLLGKDY---WS 184
Query: 147 KLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
L++++ G +E +L+++ D+ EA ++ FYD
Sbjct: 185 GLIEWIKGTMLQKEHNIHEEDLNLFRLVDTAEEAAEHIFRFYD 227
>gi|395778962|ref|ZP_10459473.1| TIGR00730 family protein [Bartonella elizabethae Re6043vi]
gi|423714810|ref|ZP_17689034.1| TIGR00730 family protein [Bartonella elizabethae F9251]
gi|395417137|gb|EJF83489.1| TIGR00730 family protein [Bartonella elizabethae Re6043vi]
gi|395431029|gb|EJF97057.1| TIGR00730 family protein [Bartonella elizabethae F9251]
Length = 287
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE-TYLTCRFFSARKH 86
+G GPG+M+A +GA G P G + + S P+L YL R + H
Sbjct: 143 TGGGPGIMEAGNRGACDVGAPTVGLNIILPHEQEPNSYVSPHLCFNFHYLGMR----KMH 198
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GTLDE+FE L LIQ R+ VP L+ + F+
Sbjct: 199 FLVRAK---------ALAIFPGGFGTLDELFETLTLIQTGRMKQ---VPILLFGKE-FWS 245
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++F GT++ +V +L K ++ +EA + FY L
Sbjct: 246 NAVNF-EYLASQGTISPTDV-NLVKFVNTAAEAFKEIRSFYKL 286
>gi|383828870|ref|ZP_09983959.1| TIGR00730 family protein [Saccharomonospora xinjiangensis XJ-54]
gi|383461523|gb|EID53613.1| TIGR00730 family protein [Saccharomonospora xinjiangensis XJ-54]
Length = 260
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 25/152 (16%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP Y +LG +I L + +G GPG M+AV +GA +AG G +G
Sbjct: 89 DHPEY----QLGRQIGAALAGAGFAAITGGGPGSMEAVNRGASEAG----GLSIGLGIEL 140
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+P++ L + R+F ARK + A A + LPGG GTLDE+FE L
Sbjct: 141 PFEQGLNPWVDLG--VNFRYFFARKTMFVKYA--------QAFICLPGGFGTLDELFEAL 190
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q +++ ++ PV V+ S++ L D++
Sbjct: 191 TLVQTKKV-TKFPV---VLFGSSYWGGLYDWV 218
>gi|336173968|ref|YP_004581106.1| hypothetical protein [Lacinutrix sp. 5H-3-7-4]
gi|334728540|gb|AEH02678.1| Conserved hypothetical protein CHP00730 [Lacinutrix sp. 5H-3-7-4]
Length = 229
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y +L +A+ + + +G GPG+M+A KGA AG G VG
Sbjct: 52 PDHKYY----KLAENVAKRICEAGYGVITGGGPGIMEAGNKGAHLAG----GTSVGLNIE 103
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ + L +F RK + + V +PGG GTLDE+FE
Sbjct: 104 LPFEQHDNPYIDNDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEA 155
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNS 177
+ LIQ +I P +++ D F+ L+D++ + + + V+ ++ L + D+
Sbjct: 156 ITLIQTNKIEK---FPIILVGTD-FWSGLIDWVKETVLDKFTNVSPGDL-DLIHLVDTEE 210
Query: 178 EALSYLAEFY 187
E ++ L FY
Sbjct: 211 EVVTILDAFY 220
>gi|222110499|ref|YP_002552763.1| hypothetical protein Dtpsy_1298 [Acidovorax ebreus TPSY]
gi|221729943|gb|ACM32763.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
Length = 288
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA AG G + + S P L + +F+
Sbjct: 132 DFVVITGGGPGIMEAANRGAFDAGARSIGLNITLPHEQTPNSYMCPELAFRFH----YFA 187
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A +V PGG GTLDE+FE+L LIQ ++ +PV V+
Sbjct: 188 LRKMHFLMHA--------RGLVTFPGGFGTLDELFEVLTLIQTGKM-QRIPV---VLVGR 235
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
+F+ + +DF D G V+ ++ L+ D E + L FY
Sbjct: 236 TFWHRAVDF-DLLLDEGYVSPSDL-DLFTCVDKAEEIIGALERFY 278
>gi|406879041|gb|EKD27776.1| hypothetical protein ACD_79C00583G0002 [uncultured bacterium]
Length = 281
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG G+M A KGA +AG G VG + Y+ E +F RK
Sbjct: 126 SGGAGGIMCAANKGAKKAG----GKSVGLNISLPFEQEANKYITPELVFEFHYFFMRKFW 181
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A++ PGG GT+DE+ E L LIQ +++ +P+ V+ F+ +
Sbjct: 182 FVYLA--------KALIVFPGGFGTMDELMEALTLIQTKKLRKHIPI---VIFGKKFWNE 230
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+++F E WG ++ ++ L+ I D EA +YL
Sbjct: 231 VINFEKLVE-WGVISPQDL-DLFLITDDIDEAFNYLTR 266
>gi|325964010|ref|YP_004241916.1| hypothetical protein Asphe3_26620 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470097|gb|ADX73782.1| conserved hypothetical protein, DprA/Smf-related, family 1
TIGR00725/conserved hypothetical protein,
DprA/Smf-related, family 2 TIGR00730 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 260
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 29/183 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG- 59
P P+Y E+G ++A +G GPG M+A +G ++ G VG G ++ E G
Sbjct: 83 PGSPYYEMGVEVGRKLAEA-GVAVITGGGPGSMEAANRGTVEGNGVSVGLGIELPFEQGL 141
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W ++ + R+F ARK + A + LPGG+GTLDE+FE
Sbjct: 142 NQW----------VDLGINFRYFFARKTMFVKYA--------QGFIVLPGGLGTLDELFE 183
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNS 177
+ L+Q ++ S P +++ D F+ ++D++ G G V++ ++ L ++ D +
Sbjct: 184 AMVLVQTRKVTS---FPIVLLGVD-FWGPMIDWIRGTLVAEGMVSEKDL-DLIQLVDDPA 238
Query: 178 EAL 180
EA+
Sbjct: 239 EAV 241
>gi|74318470|ref|YP_316210.1| hypothetical protein Tbd_2452 [Thiobacillus denitrificans ATCC
25259]
gi|74057965|gb|AAZ98405.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 242
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 27/190 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH +Y L +IAR L + SG GPG+M+A KGA P G + +
Sbjct: 59 PDHAYYT----LTEDIARKLSDAGFSVISGGGPGIMEAANKGAYFGKSPSVGLNI-QLPH 113
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E +A+ + + T + F ARK + A A V +PGG GTLDE+ E
Sbjct: 114 EQSANAYQ-----DISQTFQHFFARKVMFVKFA--------AAYVVMPGGYGTLDELTEA 160
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSE 178
L L+Q +I +P +++ SF+ L +++G G V+ ++V L ++ D E
Sbjct: 161 LTLVQTGKIQR---IPIILVG-SSFWGGLAEWVGTRLVKEGMVSAEDV-ELMRVLDKPEE 215
Query: 179 ALSYLAEFYD 188
+ + Y+
Sbjct: 216 VVDAIFNHYE 225
>gi|372281623|ref|ZP_09517659.1| decarboxylase [Oceanicola sp. S124]
Length = 288
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 10 QSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPY 69
+S +LGG+ D +G GPG+M+A KGA +AG G +G + Y
Sbjct: 114 RSMDLGGK-----DYVVCTGGGPGVMEAGNKGAAEAG----GQSIGLSIVLPHEQVPNDY 164
Query: 70 LPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIG 129
+ E +F+ RK + A A+ PGG GTLDE FE L LIQ R+
Sbjct: 165 VTPELCFNFHYFAVRKMHFLMRA--------RAICVFPGGFGTLDETFEALTLIQTGRME 216
Query: 130 SELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
+ PFL +F++ +++F E GTV+ +++ L+K ++ EA+ +
Sbjct: 217 RQ---PFLFFGR-AFWEGVINFEALVE-AGTVSPEDM-ELFKFVETAEEAMEAI 264
>gi|221507824|gb|EEE33411.1| lysine decarboxylase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 397
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 28 SGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
+G GPG+M+A GA + G+ +G G + EAG +P++ +F R
Sbjct: 206 TGGGPGMMEAGNSGAASVAGGRSMGMGISLPFEAG------LNPFVDEGLAFEFHYFFTR 259
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K ++ A+ V+ PGGVGTLDE+ E+L L Q ++ ++P+ V+ F
Sbjct: 260 KFWMVYSAL--------GVIVAPGGVGTLDELMEVLTLKQSGKMKRDIPI---VLFGKQF 308
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+K ++ F ++G V++ + L+ D N EA YL +F
Sbjct: 309 WKDIICF-DKLVEYGVVSEKDRDQLFYTDDEN-EAFEYLKQF 348
>gi|374854989|dbj|BAL57858.1| hypothetical conserved protein [uncultured Bacteroidetes bacterium]
Length = 239
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 19/155 (12%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A KGA K +GG+ VG + +PY+ + +F RK + A
Sbjct: 92 MEAGNKGA----KELGGYSVGLNILLPFEQHPNPYVDENLLINFDYFFVRKVMFVKYA-- 145
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
A V LPGG GT+DE+FE L LIQ +I PV VM F++ L++++
Sbjct: 146 ------QAFVVLPGGFGTMDELFEALTLIQTRKI-ERFPV---VMVGRQFWQGLVEWIKQ 195
Query: 155 C--EDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
E+W ++ +++ L+ + D+ E + + FY
Sbjct: 196 VVLEEWNYISPEDLF-LFSVVDTPQEVVEVINNFY 229
>gi|333981855|ref|YP_004511065.1| hypothetical protein [Methylomonas methanica MC09]
gi|333805896|gb|AEF98565.1| Conserved hypothetical protein CHP00730 [Methylomonas methanica
MC09]
Length = 238
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 21/195 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+H +Y ++ EL E+ SG GPG+M+A +GA Q +P G + E
Sbjct: 61 EHFYYQKTVELA-ELLSKEGFAIISGGGPGVMEAANRGAHQQNQPSIGLNI--ELPMEQK 117
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+N + L L R+F RK + ++ V +PGG GTLDE FE L L+
Sbjct: 118 ANAYQSLSL----NFRYFFVRKVMFVRYSM--------GYVCMPGGFGTLDEFFEALTLM 165
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q + P+P ++ D F+ L+D++ ++ T++ +++ L + D E +
Sbjct: 166 QTHK---AYPLPLVLFGSD-FWGGLMDWMKHKMLEYRTISPEDM-ELITVTDDPEEVVKI 220
Query: 183 LAEFYDLSSIDKRVH 197
+A + + + H
Sbjct: 221 MAAHREWKNRQRHQH 235
>gi|291302945|ref|YP_003514223.1| hypothetical protein Snas_5499 [Stackebrandtia nassauensis DSM
44728]
gi|290572165|gb|ADD45130.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM
44728]
Length = 241
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 19/152 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P Y+ +LG +A+ + +G GPG+M+A +GA AG G +G
Sbjct: 65 PGSEEYVLGEQLGAALAKA-NFGVITGGGPGIMEAANRGARSAG----GVSIGLGIELPF 119
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ Y+ + L R+F ARK + + A LPGG GTLDE+FE L L
Sbjct: 120 EQKLNDYI--DIGLDFRYFFARKTMFVKYS--------QAFCVLPGGFGTLDELFEALTL 169
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
+Q +++ + PV + ++Y ++ L+D+L D
Sbjct: 170 VQTKKV-TRFPVVLMGVSY---WQGLIDWLRD 197
>gi|126732704|ref|ZP_01748500.1| decarboxylase family protein [Sagittula stellata E-37]
gi|126706834|gb|EBA05904.1| decarboxylase family protein [Sagittula stellata E-37]
Length = 280
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G G +G + Y+ + +F+ RK
Sbjct: 128 TGGGPGVMEAGNRGASDEG----GVSIGLNIVLPFEQAPNTYVTPDLAFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AV PGG GTLDE+FE L LIQ R+ PVPFL+ +F++K
Sbjct: 184 FLMRA--------RAVCVFPGGFGTLDELFEALTLIQTGRM---TPVPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++ +++ L++ ++ EA+ +
Sbjct: 232 IINWQA-LADAGTISAEDL-DLFRFVETAEEAVDII 265
>gi|237785235|ref|YP_002905940.1| hypothetical protein ckrop_0634 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758147|gb|ACR17397.1| hypothetical protein ckrop_0634 [Corynebacterium kroppenstedtii DSM
44385]
Length = 322
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 27/207 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D P+Y + E+G R L + +G GPGLM+A +G +AG G +G
Sbjct: 97 DSPYYKKGVEVG----RALHEAGYGVITGGGPGLMEAANRGCAEAG----GLSIGLGIEL 148
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
N + ++ L L R+F RK + + A V LPGG GT+DE+FE L
Sbjct: 149 PHEQNLNAWVNLG--LNFRYFFVRKTMFLKYS--------QAFVCLPGGFGTMDELFEAL 198
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ + P+ V+ F+ L++++ D + + L+ + D EA+
Sbjct: 199 VLVQTGKV-TRYPI---VLIGTEFWSGLVEWIRDRLISEKMVSPDDPDLFLVTDDVEEAV 254
Query: 181 SYLAEFYD--LSSIDKRVHEVNLKSTH 205
Y+ ++ + + +R+ E +L +
Sbjct: 255 GYITTKHEGFVEELGRRLEENSLSHSQ 281
>gi|237839445|ref|XP_002369020.1| lysine decarboxylase domain-containing protein [Toxoplasma gondii
ME49]
gi|211966684|gb|EEB01880.1| lysine decarboxylase domain-containing protein [Toxoplasma gondii
ME49]
Length = 397
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 28 SGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
+G GPG+M+A GA + G+ +G G + EAG +P++ +F R
Sbjct: 206 TGGGPGMMEAGNSGAASVAGGRSMGMGISLPFEAG------LNPFVDEGLAFEFHYFFTR 259
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K ++ A+ V+ PGGVGTLDE+ E+L L Q ++ ++P+ V+ F
Sbjct: 260 KFWMVYSAL--------GVIVAPGGVGTLDELMEVLTLKQSGKMKRDIPI---VLFGKQF 308
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+K ++ F ++G V++ + L+ D N EA YL +F
Sbjct: 309 WKDIICF-DKLVEYGVVSEKDRDQLFYTDDEN-EAFEYLKQF 348
>gi|156743600|ref|YP_001433729.1| hypothetical protein Rcas_3662 [Roseiflexus castenholzii DSM 13941]
gi|156234928|gb|ABU59711.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
Length = 263
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 21/128 (16%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D+P Y + ++AR L T +G GPG+M+A +GA +AG G + +
Sbjct: 71 DNPLY----QTAVDVARTLGEAGFTIITGGGPGIMEAGNRGAREAGARSVGLNIELPFEQ 126
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY+ +T +T R+F RK L+ A A V PGG GTLDE+FE L
Sbjct: 127 ----HLNPYV--DTSVTFRYFFVRKMMLVKYA--------QAFVIFPGGFGTLDELFEAL 172
Query: 121 ALIQLERI 128
L+Q ++
Sbjct: 173 TLVQTGKV 180
>gi|260428871|ref|ZP_05782848.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260419494|gb|EEX12747.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 280
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA +AG G +G + Y+ E +F+ RK
Sbjct: 128 TGGGPGVMEAGNRGAEEAG----GVSIGLNIVLPHEQAPNTYVTPELCFNFHYFAIRKMH 183
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDEMFE L LIQ R+ VPFL+ +F++K
Sbjct: 184 FLMRA--------RAICVFPGGFGTLDEMFEALTLIQTGRMER---VPFLLFGR-AFWEK 231
Query: 148 LLDFLGDCEDWGTVAKDEV 166
++++ ED GT++ +++
Sbjct: 232 IINWEA-LEDAGTISPEDL 249
>gi|384085836|ref|ZP_09997011.1| hypothetical protein AthiA1_10064 [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 239
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 21/189 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+GPD+P YL++ E+ +++ + SG GPG+M+A KGA G+ +G
Sbjct: 54 LGPDNPWYLKTQEIAEKLSNA-GFSVLSGGGPGIMEAANKGAFHGT----GYSIGLNIEL 108
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY + ++ F +RK + AV A V +PGG GTLDE+ E L
Sbjct: 109 PHEQHSNPYQ--DIAISFEHFYSRKVMFMKYAV--------AYVVMPGGFGTLDELAECL 158
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEA 179
L+Q G +P +++ D F+ L+ + + GT+ +++ L + D E
Sbjct: 159 TLVQ---TGKTRRMPIILVGSD-FWNGLIAWWQEAMLGLGTINPEDL-HLITVIDDPDEV 213
Query: 180 LSYLAEFYD 188
+S + Y+
Sbjct: 214 VSAIFNHYE 222
>gi|221483338|gb|EEE21657.1| lysine decarboxylase domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 397
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 28 SGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
+G GPG+M+A GA + G+ +G G + EAG +P++ +F R
Sbjct: 206 TGGGPGMMEAGNSGAASVAGGRSMGMGISLPFEAG------LNPFVDEGLAFEFHYFFTR 259
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K ++ A+ V+ PGGVGTLDE+ E+L L Q ++ ++P+ V+ F
Sbjct: 260 KFWMVYSAL--------GVIVAPGGVGTLDELMEVLTLKQSGKMKRDIPI---VLFGKQF 308
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+K ++ F ++G V++ + L+ D N EA YL +F
Sbjct: 309 WKDIICF-DKLVEYGVVSEKDRDQLFYTDDEN-EAFEYLKQF 348
>gi|399073953|ref|ZP_10750734.1| TIGR00730 family protein [Caulobacter sp. AP07]
gi|398040938|gb|EJL34024.1| TIGR00730 family protein [Caulobacter sp. AP07]
Length = 273
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA AG P GF + + +PY + +F+
Sbjct: 110 DNVIATGGGPGVMEAANRGAWDAGAPSVGFNITLPHEQQP----NPYATPDLSFRFHYFA 165
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + A+R + A+V PGG GT DE+FEIL L Q ++ +P+ V+ +
Sbjct: 166 MRK---MHLAMRAN-----ALVVFPGGFGTFDELFEILTLRQTDK-APRIPI---VLFDE 213
Query: 143 SFYKKLLDF 151
++++ +++F
Sbjct: 214 AYWRSVVNF 222
>gi|254485888|ref|ZP_05099093.1| conserved hypothetical protein TIGR00730 [Roseobacter sp. GAI101]
gi|214042757|gb|EEB83395.1| conserved hypothetical protein TIGR00730 [Roseobacter sp. GAI101]
Length = 280
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 9 LQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
L+S E GG D +G GPG+M+A +GA AG G +G +
Sbjct: 114 LKSMESGGH-----DNVIVTGGGPGVMEAGNRGAADAG----GESIGLNIVLPFEQAPNE 164
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ E +F RK + A AV PGG GTLDE FE L LIQ R+
Sbjct: 165 YVTPELCFNFHYFGIRKMHFLMRA--------RAVCVFPGGFGTLDETFEALTLIQTGRM 216
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
VPFL+ +F++K++++ D GT++ +++ L++ ++ +EA+ +
Sbjct: 217 SR---VPFLLFGR-AFWEKIINW-DALADAGTISAEDL-DLFQFVETAAEAVHLI 265
>gi|343522880|ref|ZP_08759846.1| TIGR00730 family protein [Actinomyces sp. oral taxon 175 str.
F0384]
gi|343402289|gb|EGV14795.1| TIGR00730 family protein [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 286
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 23/152 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGE 60
P+ Y + E+G +AR +G GPG+M+A +G +AG VG G ++ E G
Sbjct: 111 PEDTTYRVAMEVGAGLARA-GYAVITGGGPGMMEAANRGCHEAGGTSVGLGIELPHEQG- 168
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE L
Sbjct: 169 -----MNEYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGMGTLDELFEAL 213
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++I S P+ V+ ++ LLD+L
Sbjct: 214 TLVQTQKI-SSFPI---VLVDSGYWGGLLDWL 241
>gi|399018905|ref|ZP_10721061.1| TIGR00730 family protein [Herbaspirillum sp. CF444]
gi|398099217|gb|EJL89486.1| TIGR00730 family protein [Herbaspirillum sp. CF444]
Length = 248
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 43/197 (21%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
D PHY L +IAR L + SG GPG+M+A KGA P G +
Sbjct: 63 DDPHY----ALCVDIARRLSDAGFAVISGGGPGIMEAANKGAFDGASPSVGLNI------ 112
Query: 61 WTASNFHPYLPLETY--------LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
LP E + L+ R F ARK + A A V LPGG GT
Sbjct: 113 --------ELPHEQHGNGWQDISLSFRHFFARKVAFVKYA--------DAYVVLPGGFGT 156
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCEDWGTVAKDEVASLWK 171
LDE+ E L L+Q G +P +++ F+ L+D++ D G ++ ++ L +
Sbjct: 157 LDELTEALTLMQ---TGKSRLMPVILVG-SKFWGGLMDWIKTQLIDDGMISPKDL-DLMQ 211
Query: 172 ICDSNSEALSYLAEFYD 188
+ D +E + + +FY+
Sbjct: 212 VIDDPAEVVVAIQKFYE 228
>gi|325002593|ref|ZP_08123705.1| lysine decarboxylase [Pseudonocardia sp. P1]
Length = 256
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
Y Q ELG +A +G GPG M+A +GA +AG G VG
Sbjct: 88 EYEQGRELGARLAGA-GFAVITGGGPGAMEAANRGASEAG----GLSVGLGIELPFEQGL 142
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+P++ L + R+F ARK + + A V LPGG GTLDE+FE L L+Q +
Sbjct: 143 NPWVDLG--INFRYFFARKTMFVKYS--------QAFVCLPGGFGTLDELFEALVLVQTK 192
Query: 127 RIGSELPVPFLVMNY 141
++ ++ PV L +Y
Sbjct: 193 KV-TKFPVVLLGTDY 206
>gi|406908046|gb|EKD48675.1| hypothetical protein ACD_64C00186G0003 [uncultured bacterium]
Length = 218
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A GA +A G +G + Y P+ +T +F RK
Sbjct: 70 TGGGPGIMEAANCGAYEASDTKKGITLGIRVTNVDTDFTNKYAPI---ITVDYFFIRKWL 126
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143
L R C V PGG+GT+DE+FE+L L++LER+ S+LPV + Y S
Sbjct: 127 L----TRYACC----FVFFPGGIGTVDELFEVLNLMKLERM-SQLPVILVGKEYWS 173
>gi|224823576|ref|ZP_03696685.1| conserved hypothetical protein [Pseudogulbenkiania ferrooxidans
2002]
gi|347541479|ref|YP_004848905.1| putative lysine decarboxylase [Pseudogulbenkiania sp. NH8B]
gi|224604031|gb|EEG10205.1| conserved hypothetical protein [Pseudogulbenkiania ferrooxidans
2002]
gi|345644658|dbj|BAK78491.1| putative lysine decarboxylase [Pseudogulbenkiania sp. NH8B]
Length = 242
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 31/157 (19%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DH +Y +L EIAR L + SG GPG+M+A +KGA P +
Sbjct: 60 DHTYY----KLAEEIARRLSDSGFSVISGGGPGIMEAASKGAFYGRSPSVALNIVLP--- 112
Query: 61 WTASNFHPYLPLETY-LTCRF--FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
H P E L+ +F F RK + A+ A V +PGG GTLDEMF
Sbjct: 113 ------HEQKPNEYQDLSIKFNHFFPRKVMFVKHAI--------AYVVMPGGFGTLDEMF 158
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
E L LIQ G +P ++ + F+K LLD++ +
Sbjct: 159 EALTLIQ---TGKSRKIPIILCGTE-FWKGLLDWVKE 191
>gi|375099057|ref|ZP_09745320.1| TIGR00730 family protein [Saccharomonospora cyanea NA-134]
gi|374659789|gb|EHR59667.1| TIGR00730 family protein [Saccharomonospora cyanea NA-134]
Length = 261
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 27/188 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP Y +LG +I L + +G GPG M+AV +GA +AG G +G
Sbjct: 90 DHPEY----QLGRQIGAALAGAGFAAITGGGPGAMEAVNRGASEAG----GLSIGLGIEL 141
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+P++ L + R+F RK + A A + LPGG GTLDE+FE L
Sbjct: 142 PFEQGLNPWVDLG--VNFRYFFTRKTMFVKYA--------QAFICLPGGFGTLDELFEAL 191
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEA 179
L+Q +++ ++ PV V+ +++ L +++ D G + + ++A L + D +A
Sbjct: 192 TLVQTKKV-TKFPV---VLFGSAYWGGLYEWVRDTVLSEGKINERDMA-LLHVTDDIDDA 246
Query: 180 LSYLAEFY 187
+ + E Y
Sbjct: 247 IGVVQEAY 254
>gi|408529475|emb|CCK27649.1| lysine decarboxylase [Streptomyces davawensis JCM 4913]
Length = 252
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA +A G VG G ++ E G
Sbjct: 86 DSPEYDAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGACEAKGTSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ + P+ V+ ++ L+D+L A ++ L+ + D EA++
Sbjct: 189 LVQTQKV-TRFPI---VLFGTEYWGGLVDWLRKTVIAQGKASEKDLLLFHVTDEVEEAVA 244
Query: 182 YLAE 185
+++
Sbjct: 245 LVSK 248
>gi|298252730|ref|ZP_06976524.1| Rossmann fold nucleotide-binding protein [Gardnerella vaginalis
5-1]
gi|297533094|gb|EFH71978.1| Rossmann fold nucleotide-binding protein [Gardnerella vaginalis
5-1]
Length = 267
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 23/151 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
D P Y + +G E+A + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 103 DDPDYSLARTMGSELA-IRGFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQG-- 159
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ L + R+F RK + + + ++ PGG GT+DEMFE L
Sbjct: 160 ----LNKWINLG--MQFRYFFVRKTMFMKYS--------SGIIVCPGGFGTMDEMFEALT 205
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++ + +PV V+ S++ L+D+L
Sbjct: 206 LVQTHKV-ARVPV---VLFGTSYWNGLIDWL 232
>gi|254453438|ref|ZP_05066875.1| decarboxylase family protein [Octadecabacter arcticus 238]
gi|198267844|gb|EDY92114.1| decarboxylase family protein [Octadecabacter arcticus 238]
Length = 296
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G +G + Y+ E +F+ RK
Sbjct: 143 TGGGPGVMEAGNRGAVDAG----GRSIGLNIVLPHEQAPNKYVTPELSFNFHYFAIRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE FE L LIQ R+ +PFL+ +F++
Sbjct: 199 FLMRA--------KAITVFPGGFGTLDETFEALTLIQTGRMER---IPFLLFGR-AFWES 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++ D++ +L++ ++ EA+ L
Sbjct: 247 IINW-DALSDAGTISADDL-TLFRFVETAEEAVDAL 280
>gi|406987318|gb|EKE07705.1| hypothetical protein ACD_18C00003G0002 [uncultured bacterium]
Length = 415
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 30/192 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
M + P+Y +++LG +A T +G G G+M+A KGA + +GG +G
Sbjct: 246 MSKNSPYYESAYQLGRALAEN-KFATVTGGGTGIMEAANKGAFE----MGGDSIGINMKH 300
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
N++ Y+ + ++ F RK LI A A V PGG GTL ++FE+L
Sbjct: 301 GNRENYNAYV--KKAISFDFPFTRK--LIITA------PSKAFVFFPGGFGTLHQLFEVL 350
Query: 121 ALIQLERIGSELPVPFLVMNYD------SFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
L+Q +++ +P ++ ++ +F KK+ F+ E G DE L++I D
Sbjct: 351 TLMQTKKMER---IPVILFGHEFWGPLHTFIKKI--FVHKFETTG----DEDDELYQIVD 401
Query: 175 SNSEALSYLAEF 186
+ A+ + +F
Sbjct: 402 NVDSAIDLIKDF 413
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 21/193 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ P++ +Y + +LG +A+ T +G GPG+M+A KGA +A GG VG
Sbjct: 26 LKPENKYYKTAEKLGALLAKGGFTTL-TGGGPGVMEAANKGAFEA----GGDSVGINIQL 80
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY+ T +F RK LI + A V PGG GT+DE FE++
Sbjct: 81 PFEQRINPYVKSST--AFYYFFTRKVMLISPS--------NAFVLFPGGFGTMDEFFEVV 130
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEA 179
L++L G P +++ + F++ +LDFL + G++ + E+ + W + ++ EA
Sbjct: 131 DLMEL---GYMKHSPIILVGKE-FWQPILDFLKNNSVKVGSITEAEI-NHWHVVETAEEA 185
Query: 180 LSYLAEFYDLSSI 192
++ + D+ I
Sbjct: 186 YEFIKDVKDVQDI 198
>gi|302343373|ref|YP_003807902.1| hypothetical protein Deba_1943 [Desulfarculus baarsii DSM 2075]
gi|301639986|gb|ADK85308.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
Length = 220
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 25/190 (13%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
P P Y Q+ E+G RLL + +G G G+M+A KGA +AG G VG
Sbjct: 53 PGTPEYRQAEEMG----RLLVEAGFSVITGGGGGVMEAANKGASEAG----GHSVGLNIE 104
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+PY + L R+F RK + +V A V +PGG GTLDE+ E
Sbjct: 105 LPFEQKPNPYANVR--LDFRYFFVRKVMFVKHSV--------AYVVMPGGFGTLDELAEA 154
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L LIQ RI P P +M ++ L+ ++ + E L + DS +
Sbjct: 155 LTLIQTHRI---RPFPVFLMG-SQYWGGLVQWMDTVLKGHGMISPEDMDLLHVVDSPAAV 210
Query: 180 LSYLAEFYDL 189
+ +++ L
Sbjct: 211 IRQISQMVIL 220
>gi|320532975|ref|ZP_08033727.1| conserved hypothetical protein TIGR00730 [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320134805|gb|EFW27001.1| conserved hypothetical protein TIGR00730 [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 251
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 23/152 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGE 60
P+ P Y + E+G + R +G GPG+M+A +G +AG VG G ++ E G
Sbjct: 76 PEDPFYRVAMEVGAGLTRA-GYAVITGGGPGMMEAANRGCHEAGGTSVGLGIELPHEQG- 133
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ L + R+F ARK + + V +PGG+GTLDE+FE L
Sbjct: 134 -----MNEYVDLG--VNFRYFFARKTMFVKYS--------DGFVVMPGGMGTLDELFEAL 178
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++I S P+ V+ ++ LL++L
Sbjct: 179 TLVQTQKI-SSFPI---VLVDSGYWGGLLEWL 206
>gi|171058782|ref|YP_001791131.1| hypothetical protein Lcho_2099 [Leptothrix cholodnii SP-6]
gi|170776227|gb|ACB34366.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
Length = 303
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA + VGG +G +PY+ E +F+ RK
Sbjct: 146 TGGGPGIMEAGNRGAHE----VGGKSIGLNIVLPHEQEPNPYITPELCFQFHYFALRKMH 201
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ ++ A+V PGG GTLDE+FE L L+Q G P L+ + F+ +
Sbjct: 202 FVMRSI--------ALVCFPGGFGTLDELFETLTLVQ---TGKSRARPILLFGRE-FWSR 249
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
L++F E A D L+K ++ +A LAE Y
Sbjct: 250 LINFDLLIETGMIHAAD--VGLFKFVETAEDAWYCLAEHY 287
>gi|418407899|ref|ZP_12981216.1| hypothetical protein AT5A_11757 [Agrobacterium tumefaciens 5A]
gi|358005885|gb|EHJ98210.1| hypothetical protein AT5A_11757 [Agrobacterium tumefaciens 5A]
Length = 298
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA G P G + + A N PY+ E +F+ RK + A
Sbjct: 162 MEAGNRGAADVGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 215
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ + F++ +++F
Sbjct: 216 ------KAVVIFPGGFGTLDELFETLTLIQTKRMA---PIP-LILFGEKFWRSVVNF-EF 264
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
D+GT+A +++ L ++ +A + ++ +Y+
Sbjct: 265 LADFGTIAPEDM-ELLHFAETADDAWNIVSAYYE 297
>gi|374594817|ref|ZP_09667821.1| Conserved hypothetical protein CHP00730 [Gillisia limnaea DSM
15749]
gi|373869456|gb|EHQ01454.1| Conserved hypothetical protein CHP00730 [Gillisia limnaea DSM
15749]
Length = 229
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A KGA AG G VG + +PY+ + +F RK
Sbjct: 76 TGGGPGIMEAGNKGAHLAG----GTSVGLNIDLPFEQHDNPYIDSNKNVDFDYFFVRKVM 131
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + V +PGG GTLDE+FE + LIQ +I + P+ + Y +
Sbjct: 132 FVKYS--------QGFVVMPGGFGTLDELFEAITLIQTNKI-DKFPIILVGTEY---WSG 179
Query: 148 LLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
LL+++ + +D D L ++ D+ E + L +FYD
Sbjct: 180 LLEWIRNTLQDEFENISDGDIDLVQLVDTEDEVIEILDKFYD 221
>gi|404215950|ref|YP_006670145.1| putative Rossmann fold nucleotide-binding protein [Gordonia sp.
KTR9]
gi|403646749|gb|AFR49989.1| putative Rossmann fold nucleotide-binding protein [Gordonia sp.
KTR9]
Length = 263
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 25/156 (16%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD P Y LG + R L + +G GPG M+A +GA +AG G +
Sbjct: 97 PDSPEY----ALGVRVGRALGEAGYAVITGGGPGAMEAANRGAHEAGAESIGLNIELPFE 152
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +P++ L + R+F RK + A A V LPGG+GTLDE+FE
Sbjct: 153 Q----GLNPWVNLG--MNFRYFFVRKTMFVKYA--------QAFVCLPGGMGTLDELFEA 198
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
L L+Q +++ + P +++ D F+ LL ++ D
Sbjct: 199 LTLVQTKKV---VRFPIVLVGSD-FWGGLLAWMRDV 230
>gi|254388890|ref|ZP_05004121.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|197702608|gb|EDY48420.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
Length = 277
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 27/187 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
P P Y +GG L+D +G GPG M+A GA +A G VG G ++ E
Sbjct: 110 PGTPEYEAGVRIGGA---LVDAGFAVITGGGPGAMEAANLGAREARGVSVGLGIELPFEQ 166
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G +P++ + + R+F RK + A + V LPGG+GTLDE+FE
Sbjct: 167 G------LNPHV--DIGVNFRYFFVRKTMFVKYA--------SGFVVLPGGLGTLDELFE 210
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q ++ + P+ V+ +++ L+D+L D A + L+ + D E
Sbjct: 211 ALTLVQTGKV-TRFPI---VLFGSAYWSGLVDWLRDTVVGQGKASERDLLLFHVTDDVDE 266
Query: 179 ALSYLAE 185
A+S + +
Sbjct: 267 AVSLVTK 273
>gi|172040345|ref|YP_001800059.1| hypothetical protein cur_0665 [Corynebacterium urealyticum DSM
7109]
gi|448823327|ref|YP_007416492.1| hypothetical protein CU7111_0654 [Corynebacterium urealyticum DSM
7111]
gi|171851649|emb|CAQ04625.1| hypothetical protein cu0665 [Corynebacterium urealyticum DSM 7109]
gi|448276824|gb|AGE36248.1| hypothetical protein CU7111_0654 [Corynebacterium urealyticum DSM
7111]
Length = 292
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DH +Y ++G IAR T +G GPGLM+A +GA AG G +G
Sbjct: 95 DHEYYKLGQQIGELIARS-GYATITGGGPGLMEAANRGAADAG----GLSIGLGIELPHE 149
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ L + R+F RK + + A + LPGG GTLDE+FE L ++
Sbjct: 150 QRLNDWVQLG--MNFRYFFVRKTMFLKYS--------QAFICLPGGFGTLDELFEALVMV 199
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++I P+ ++ F+ L+D++ + + E L + D +A+ +
Sbjct: 200 QTQKI-QRFPI---ILVGTRFWGPLVDWIKEGLVEEKMISPEDVDLIHLTDDPEDAMDFC 255
Query: 184 AEFYD 188
+D
Sbjct: 256 HRAHD 260
>gi|189426094|ref|YP_001953271.1| hypothetical protein Glov_3045 [Geobacter lovleyi SZ]
gi|189422353|gb|ACD96751.1| conserved hypothetical protein [Geobacter lovleyi SZ]
Length = 342
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD P Y +RLL W +G GPG+M A +GA K+ E
Sbjct: 88 PDEPIYQTCIRF----SRLLAEQGWMTITGGGPGIMQAGNEGAGSENSFAVNIKLPFEQS 143
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +P L +T ++F RK + A AV PGG GTLDE E+
Sbjct: 144 ANPVMHNNPRL-----VTYKYFFNRKVAFVKEA--------DAVAVFPGGFGTLDEAMEV 190
Query: 120 LALIQLERIGSELPVPF-LVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L+Q G P P LV + D F+++ +F+ + + E S++ I E
Sbjct: 191 FTLVQ---TGKTSPKPLVLVDDEDGFWEQFFEFVKEQLLAKGLISGEDFSIFTITKDERE 247
Query: 179 ALSYLAEFY 187
A + + FY
Sbjct: 248 AAAVIETFY 256
>gi|390449094|ref|ZP_10234706.1| hypothetical protein A33O_05855 [Nitratireductor aquibiodomus RA22]
gi|389664884|gb|EIM76368.1| hypothetical protein A33O_05855 [Nitratireductor aquibiodomus RA22]
Length = 215
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKE 57
G D H+ LG +A + G+M AV +G M AG V G F + +E
Sbjct: 28 GRDERHFQAGLTLGRSLAEARLRLIYGAGTKGIMGAVARGTMDAGGTVTGIIPKFLIRRE 87
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A E + L+ + RKH + + R+D A VALPGG+GTL+E+
Sbjct: 88 ANEVDLAE------LDELIVTEDMHQRKHTMFE---RSD-----AFVALPGGIGTLEEIV 133
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTV 161
EI+ QL R E P F N F+ LL + + G V
Sbjct: 134 EIMTWAQLAR--HEKPTVF--ANIGGFWNPLLTLVDHMKQEGFV 173
>gi|336326016|ref|YP_004605982.1| hypothetical protein CRES_1464 [Corynebacterium resistens DSM
45100]
gi|336101998|gb|AEI09818.1| hypothetical protein CRES_1464 [Corynebacterium resistens DSM
45100]
Length = 286
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG--E 60
HP+Y +LG I + T +G GPGLM+A +GA ++G +G G ++ E G
Sbjct: 82 HPYYETGVKLGEAIHKA-GYATITGGGPGLMEAPNRGAQESGGMSIGLGIELPMEQGLNR 140
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
W ++ L R+F RK + + A + LPGG GTLDE+FE L
Sbjct: 141 W----------VDMGLNFRYFFVRKTMFLKYS--------QAFICLPGGFGTLDELFESL 182
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEA 179
++Q +I P+ ++ F+ L+D++ D G ++ ++V L+ + D EA
Sbjct: 183 VMVQTGKI-QRFPI---ILIGTEFWGGLVDWIRSRLVDEGMISPEDV-DLFHVTDDPLEA 237
Query: 180 LSYLAEFYD 188
+ E ++
Sbjct: 238 VRICVETHN 246
>gi|294814830|ref|ZP_06773473.1| Lysine decarboxylase family protein [Streptomyces clavuligerus ATCC
27064]
gi|326443208|ref|ZP_08217942.1| hypothetical protein SclaA2_19183 [Streptomyces clavuligerus ATCC
27064]
gi|294327429|gb|EFG09072.1| Lysine decarboxylase family protein [Streptomyces clavuligerus ATCC
27064]
Length = 249
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 27/187 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
P P Y +GG L+D +G GPG M+A GA +A G VG G ++ E
Sbjct: 82 PGTPEYEAGVRIGGA---LVDAGFAVITGGGPGAMEAANLGAREARGVSVGLGIELPFEQ 138
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G +P++ + + R+F RK + A + V LPGG+GTLDE+FE
Sbjct: 139 G------LNPHV--DIGVNFRYFFVRKTMFVKYA--------SGFVVLPGGLGTLDELFE 182
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q ++ + P+ V+ +++ L+D+L D A + L+ + D E
Sbjct: 183 ALTLVQTGKV-TRFPI---VLFGSAYWSGLVDWLRDTVVGQGKASERDLLLFHVTDDVDE 238
Query: 179 ALSYLAE 185
A+S + +
Sbjct: 239 AVSLVTK 245
>gi|86357055|ref|YP_468947.1| hypothetical protein RHE_CH01417 [Rhizobium etli CFN 42]
gi|86281157|gb|ABC90220.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 207
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 22/162 (13%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKE 57
G DH H LG EIA + G G+M AV G + G V G F + E
Sbjct: 20 GRDHSHMAAGRALGREIAEYGLRLVYGGGTKGIMGAVASGVLSGGGQVTGIIPEFLIDME 79
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A H L + ARKH + + R+D A VALPGG+GTL+E+
Sbjct: 80 A------TRHSLGQLNELIVTPDMHARKHTMFE---RSD-----AFVALPGGIGTLEEIV 125
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG 159
EI+ QL R E P+ F N + F+ +++ + + G
Sbjct: 126 EIMTWAQLGR--HEKPMVFA--NINGFWDPMMELMRHMTEEG 163
>gi|357391740|ref|YP_004906581.1| hypothetical protein KSE_48470 [Kitasatospora setae KM-6054]
gi|311898217|dbj|BAJ30625.1| hypothetical protein KSE_48470 [Kitasatospora setae KM-6054]
Length = 260
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 21/175 (12%)
Query: 12 FELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP 68
+E G +I R L + +G GPG M+A KGA +AG G VG +
Sbjct: 93 YEAGVQIGRALAEAGYAVITGGGPGAMEAANKGATEAG----GLSVGLGIELPFEQGLNE 148
Query: 69 YLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERI 128
Y+ L L R+F RK + A V LPGG+GTLDE+FE L L+Q +++
Sbjct: 149 YVDLG--LNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELFEALTLVQTKKV 198
Query: 129 GSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
+ PV V+ +++ L+++L A L+ + D SE L L
Sbjct: 199 -TRFPV---VLFGSAYWGGLVEWLKSTLVAQGKANPADLELFHVTDDVSEVLKVL 249
>gi|261378501|ref|ZP_05983074.1| methionyl-tRNA formyltransferase [Neisseria cinerea ATCC 14685]
gi|269145045|gb|EEZ71463.1| methionyl-tRNA formyltransferase [Neisseria cinerea ATCC 14685]
Length = 210
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 20 RLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT 77
RL D SG GPG+M+A KGA AGK V VG +PY + L
Sbjct: 55 RLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIALPHEQKPNPYQ--DIALR 108
Query: 78 CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
F+ RK + A V +PGG GTLDE+FEIL L+Q G P P +
Sbjct: 109 FSRFAERKAVFFSYS--------QAYVVMPGGFGTLDELFEILTLVQ---TGKVPPRP-V 156
Query: 138 VMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
V+ +F+ L +++ + + ASL+ I D E ++YL+E
Sbjct: 157 VLFGKAFWSGLAEWIKAQLLARGLISEGAASLFAISDDEDEIVAYLSE 204
>gi|84494668|ref|ZP_00993787.1| hypothetical protein JNB_07719 [Janibacter sp. HTCC2649]
gi|84384161|gb|EAQ00041.1| hypothetical protein JNB_07719 [Janibacter sp. HTCC2649]
Length = 276
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 41/191 (21%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
D P Y +G A L+D +G GPG M+A KGA +AG G +
Sbjct: 96 DDPTYDLGVRVG---ASLVDAGYAVITGGGPGAMEAANKGACEAGGTSVGLGI------- 145
Query: 62 TASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113
LP ET L R+F ARK + + + LPGG GTL
Sbjct: 146 -------ELPFETGLNQYVDLGVNFRYFFARKTMFVKYS--------QGFIVLPGGFGTL 190
Query: 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKI 172
DE+FE + L+Q ++ S P ++M ++++ LLD+L GT++ ++ SL +
Sbjct: 191 DELFEAITLVQTRKVTS---FPIILMGT-AYWQGLLDWLQSSALAAGTISAKDL-SLITL 245
Query: 173 CDSNSEALSYL 183
D EA++ +
Sbjct: 246 TDDVEEAVAAI 256
>gi|325291806|ref|YP_004277670.1| hypothetical protein AGROH133_03576 [Agrobacterium sp. H13-3]
gi|325059659|gb|ADY63350.1| hypothetical protein AGROH133_03576 [Agrobacterium sp. H13-3]
Length = 305
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA G P G + + A N PY+ E +F+ RK + A
Sbjct: 169 MEAGNRGAADVGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 222
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ + F++ +++F
Sbjct: 223 ------KAVVIFPGGFGTLDELFETLTLIQTKRMA---PIP-LILFGEKFWRSVVNF-EF 271
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
D+GT+A +++ L ++ +A + ++ +Y+
Sbjct: 272 LADFGTIAPEDM-ELLHFAETADDAWNIVSAYYE 304
>gi|83952611|ref|ZP_00961341.1| decarboxylase family protein [Roseovarius nubinhibens ISM]
gi|83835746|gb|EAP75045.1| decarboxylase family protein [Roseovarius nubinhibens ISM]
Length = 274
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 34/169 (20%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKV----GKEAGEWTAS----NFHPYLPLETYLTCR 79
+G GPG+M+A +GA AG G + + E+ NFH
Sbjct: 128 TGGGPGVMEAGNRGAADAGGNSIGLNIVLPFEQAPNEYVTPGLCFNFH------------ 175
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+ PGG GTLDE+FE L LIQ R+ PVPFL+
Sbjct: 176 YFAIRKMHFLMRA--------KAICVFPGGFGTLDELFEALTLIQTARM---TPVPFLLF 224
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+ F++ ++++ E GT++ +++ L++ ++ EA+ + +Y+
Sbjct: 225 G-EKFWRSIINWEALSEA-GTISAEDL-ELFRFVETADEAVGIIDGWYN 270
>gi|395804269|ref|ZP_10483510.1| hypothetical protein FF52_20405 [Flavobacterium sp. F52]
gi|395433913|gb|EJF99865.1| hypothetical protein FF52_20405 [Flavobacterium sp. F52]
Length = 217
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
G + + Q+ LG +A + GA GLM AV GA+ AG V G +
Sbjct: 37 GTEKIYEEQAIALGRTLAEQNIELVYGGANVGLMGAVADGALHAGGKVIGV-----LPNF 91
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
S +L L + RK + ND CD V+ALPGG GTL+E+FE+L
Sbjct: 92 LRSKEIAHLGLTELILVESMHERKTKM------NDLCD--GVIALPGGFGTLEELFEMLT 143
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
QL P ++N + FY L+ L + G + K+ + + D+ + L+
Sbjct: 144 WAQL----GLHKKPIAILNVNGFYDALITLLQTMTEKGLL-KEVNREMLLVSDNIDDLLN 198
Query: 182 YLAEFYDLSS---IDKR 195
+ + + IDKR
Sbjct: 199 QMKNYVAPTVGKWIDKR 215
>gi|395788201|ref|ZP_10467776.1| TIGR00730 family protein [Bartonella birtlesii LL-WM9]
gi|395409534|gb|EJF76122.1| TIGR00730 family protein [Bartonella birtlesii LL-WM9]
Length = 287
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 17 EIARLLDC----------TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
E ARL C +G GPG+M+A +GA G P G V + S
Sbjct: 122 EFARLCSCYSATTEYREFVVVTGGGPGIMEAGNRGATDVGAPTIGLNVVLPHEQMPNSYV 181
Query: 67 HPYLPLE-TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
P+L YL R + H L+ A+ PGG GTLDE+FE L L+Q
Sbjct: 182 TPHLCFNFHYLGMR----KMHFLMRA---------KALAVFPGGFGTLDELFETLTLMQT 228
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
R+ VP L+ + F+ +++F GT++ ++ +L ++ +EA +
Sbjct: 229 GRMKQ---VPILMFGKE-FWANVINF-DYLSAQGTISPADL-TLMTFVNTAAEAFEEIRS 282
Query: 186 FYDL 189
FY L
Sbjct: 283 FYKL 286
>gi|393719688|ref|ZP_10339615.1| hypothetical protein SechA1_08067 [Sphingomonas echinoides ATCC
14820]
Length = 312
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G G + + A N PY+ + +F+ RK H
Sbjct: 167 SGGGPSIMEAANRGAADCGHESIGLNIVLPHEQ--APN--PYVTPALSMQFHYFALRKMH 222
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ A PGG GT DE+FE+L LIQ +I P+P L+ + F+
Sbjct: 223 FLLHA---------RALAAFPGGFGTFDELFELLTLIQTGKIA---PIPVLLYGRE-FWN 269
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
++++F E+ AKD ++ ++ E + FY
Sbjct: 270 RVVNFDALVEEGVVSAKD--LKIFTFVETAQEGWDVVKAFY 308
>gi|291437442|ref|ZP_06576832.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340337|gb|EFE67293.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 257
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 22/160 (13%)
Query: 28 SGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK 85
+G GPG M+A KGA++A G VG G ++ E G +PY+ + L R+F RK
Sbjct: 114 TGGGPGAMEAANKGALEAEGVSVGLGIELPFEQG------LNPYV--DIGLNFRYFFVRK 165
Query: 86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145
+ A V LPGG+GTLDE+FE L L+Q +++ + P+ V+ ++
Sbjct: 166 MMFVKYA--------QGFVVLPGGLGTLDELFEALTLVQTQKV-TRFPI---VLFGTEYW 213
Query: 146 KKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L+D+L A ++ L+ + D EA++ +++
Sbjct: 214 GGLVDWLHHTVIAQGKAAEKDLLLFHVTDDVEEAVALVSK 253
>gi|225851123|ref|YP_002731357.1| hypothetical protein PERMA_1590 [Persephonella marina EX-H1]
gi|225645425|gb|ACO03611.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 221
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 10 QSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
+ +E E+A+ L +S G GPG+M+A +GA + G G VG
Sbjct: 51 KYYEAARELAKKLVSKGFSIITGGGPGIMEAGNRGAKEGG----GKSVGLNINLPLEQEP 106
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PY + + R+F ARK A TA V PGG GTLDE+ E L LIQ +
Sbjct: 107 NPYATVT--INFRYFFARKVMFNKYA--------TAYVLFPGGYGTLDELTETLVLIQTK 156
Query: 127 RIGSELPVPFLVMNYDS-FYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSYLA 184
++ PF V+ Y S ++ L++++ D D G + ++ +L++I D + + +
Sbjct: 157 KVK-----PFPVILYGSEYWNGLVEWIKDVVLDKGFIDSEDF-NLFQISDDLDQIVDIIV 210
Query: 185 EFY 187
FY
Sbjct: 211 SFY 213
>gi|302536704|ref|ZP_07289046.1| lysine decarboxylase [Streptomyces sp. C]
gi|302445599|gb|EFL17415.1| lysine decarboxylase [Streptomyces sp. C]
Length = 254
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y +G + +G GPG M+A KGA +A G VG G ++ E G
Sbjct: 88 DSPEYEAGVRIGSALVEA-GFAVITGGGPGAMEAANKGAREANGISVGLGIELPFEQG-- 144
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
N H ++ L R+F RK + + V LPGG+GTLDEMFE L
Sbjct: 145 --LNQH----VDLGLNFRYFFVRKTMFVKYS--------QGFVVLPGGLGTLDEMFEALT 190
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q ++I + P+ V+ ++ L+D+L + A ++ L+ + D EA++
Sbjct: 191 LVQTQKI-TRFPI---VLFGTEYWGGLIDWLRNTVIAQGKASEKDLYLFHVTDDVDEAIA 246
Query: 182 YLAE 185
+ +
Sbjct: 247 LVTK 250
>gi|405981337|ref|ZP_11039664.1| TIGR00730 family protein [Actinomyces neuii BVS029A5]
gi|404392261|gb|EJZ87321.1| TIGR00730 family protein [Actinomyces neuii BVS029A5]
Length = 241
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA-- 58
PD HY +E+G +A+ + T +G GPG+M+A KGA + G VG G ++ E
Sbjct: 76 PDSDHYKFGYEVGKLLAQK-NIATITGGGPGVMEAANKGAHEHDGASVGLGIELPHEQMM 134
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + R+F RK + A + + +PGG GTLDEMFE
Sbjct: 135 NQWVNLG----------VNFRYFFVRKTMFVKYA--------SGFIVMPGGFGTLDEMFE 176
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
+ L+Q +I P +++ D ++ LL ++ + +E ++ + D+ E
Sbjct: 177 SVTLVQTRKIKR---FPIVLVGAD-YWGGLLKWMRETVLEAGYISEEDPDMFYVADTPEE 232
Query: 179 ALS 181
A+
Sbjct: 233 AVK 235
>gi|357411370|ref|YP_004923106.1| hypothetical protein Sfla_2156 [Streptomyces flavogriseus ATCC
33331]
gi|320008739|gb|ADW03589.1| Conserved hypothetical protein CHP00730 [Streptomyces flavogriseus
ATCC 33331]
Length = 261
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 2 GPDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGK 56
GPD +E G +I + L +G GPG M+A KGA +A G VG G ++
Sbjct: 96 GPD-------YEAGVQIGKALVEAGFAVITGGGPGAMEAANKGAREAKGVSVGLGIELPF 148
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
E+G +P++ + + R+F RK + A V LPGG+GTLDE+
Sbjct: 149 ESG------LNPHV--DIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDEL 192
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
FE L L+Q ++ + P+ V+ +++ L+D+L D G A + L+ + D
Sbjct: 193 FEALTLVQTGKV-TRFPI---VLFGTAYWGGLVDWLRDTVVAGGKASEHDLMLFHVTDDV 248
Query: 177 SEALSYLAE 185
EA+ + +
Sbjct: 249 DEAVRLVTK 257
>gi|254283652|ref|ZP_04958620.1| conserved hypothetical protein TIGR00730 [gamma proteobacterium
NOR51-B]
gi|219679855|gb|EED36204.1| conserved hypothetical protein TIGR00730 [gamma proteobacterium
NOR51-B]
Length = 236
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 14 LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
LGG +AR +G GPG+M+A +GA + G G VG T +PYL
Sbjct: 77 LGGHLARA-GIPVITGGGPGVMEAANRGAHEQG----GVSVGLNIELPTEQQPNPYL--- 128
Query: 74 TYLTC-RFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSEL 132
T++T R+F RK L ++ PGG GT DE+FE+L L ER
Sbjct: 129 THVTSFRYFLTRKFMLTRYSM--------GFAVFPGGFGTADELFELLVLYNTERTERR- 179
Query: 133 PVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
P ++M +F++ ++D++ D + E ++ D EA L
Sbjct: 180 --PLVLMG-TAFWRDVIDWVMDVQGGLGYIDPEDVGFLELTDDPDEAAELL 227
>gi|254458915|ref|ZP_05072338.1| lysine decarboxylase family protein [Sulfurimonas gotlandica GD1]
gi|373868416|ref|ZP_09604814.1| putative lysine decarboxylase [Sulfurimonas gotlandica GD1]
gi|207084186|gb|EDZ61475.1| lysine decarboxylase family protein [Sulfurimonas gotlandica GD1]
gi|372470517|gb|EHP30721.1| putative lysine decarboxylase [Sulfurimonas gotlandica GD1]
Length = 256
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 22/150 (14%)
Query: 5 HPHYLQSFELGGEI-ARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVG-GFKVGKEAGEWT 62
HP+Y ++ +L + +R + T G GPG+M+ KGA++ G + A E T
Sbjct: 57 HPYYKKAQKLSSMLGSRGFNIMT--GGGPGIMEGANKGAIKHHDVESIGLNID-LAFEQT 113
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
A +P+ + L+ +F +RK L+ ++ A V PGG GTLDE+FE L L
Sbjct: 114 A---NPFTTKD--LSFDYFFSRKVMLVKYSI--------AYVIFPGGYGTLDELFEALTL 160
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
IQ ++ V V+ D FYK LLDF+
Sbjct: 161 IQTRKVTG---VKVFVVGVD-FYKPLLDFI 186
>gi|389872700|ref|YP_006380119.1| hypothetical protein TKWG_15790 [Advenella kashmirensis WT001]
gi|388537949|gb|AFK63137.1| hypothetical protein TKWG_15790 [Advenella kashmirensis WT001]
Length = 222
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P+Y ++ E+ G +A+ SG GPG+M+A KG +AG G + E
Sbjct: 45 DSPYYTKTQEISGLLAKA-GFNVISGGGPGIMEAANKGCHEAGGTSIGLNI--ELPHEQK 101
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
N + L ++F +RK + + +PGG GTLDEMFE L LI
Sbjct: 102 DNRYQ----TDSLYFKYFVSRKTTFF--------MNSAGYIIMPGGFGTLDEMFEALTLI 149
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL 152
Q + S+ PV F+ F++ L+D++
Sbjct: 150 QTGK-ASKAPVVFVGTE---FWQGLMDWI 174
>gi|418296806|ref|ZP_12908649.1| hypothetical protein ATCR1_04774 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355538981|gb|EHH08223.1| hypothetical protein ATCR1_04774 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 298
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 26/153 (16%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA AG P G + + A N PY+ E +F+ RK + A
Sbjct: 162 MEAGNRGAADAGGPSIGLNIVLPHEQ--APN--PYVTPELSFNFHYFAIRKMHFLMRA-- 215
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
AVV PGG GTLDE+FE L LIQ +R+ P+P L++ + F++ +++F
Sbjct: 216 ------KAVVIFPGGFGTLDELFEALTLIQTKRME---PIP-LILFGEKFWRSVINF-EF 264
Query: 155 CEDWGTVAKDEVASL---------WKICDSNSE 178
D+GT+A +++ L W+I ++ E
Sbjct: 265 LADFGTIAPEDMNLLHFAETADDAWRIISAHYE 297
>gi|415724098|ref|ZP_11469785.1| hypothetical protein CGSMWGv00703C2mash_03644 [Gardnerella
vaginalis 00703C2mash]
gi|388063032|gb|EIK85630.1| hypothetical protein CGSMWGv00703C2mash_03644 [Gardnerella
vaginalis 00703C2mash]
Length = 284
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 116 PDEPEYNSARIMGKELVKR-GFSVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 174
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 175 NKW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 216
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 217 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 246
>gi|386383469|ref|ZP_10068953.1| hypothetical protein STSU_11240 [Streptomyces tsukubaensis
NRRL18488]
gi|385669075|gb|EIF92334.1| hypothetical protein STSU_11240 [Streptomyces tsukubaensis
NRRL18488]
Length = 249
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 19/182 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y +G + +G GPG M+A +GA +AG G VG
Sbjct: 83 DTPEYEAGIRIGTALVEA-GFAVITGGGPGAMEAANRGAREAG----GVSVGLGIELPFE 137
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+P++ + + R+F RK + A + V LPGG+GTLDE+FE L L+
Sbjct: 138 QGLNPHV--DIGVNFRYFFVRKTMFVKYA--------SGFVVLPGGLGTLDELFEALTLV 187
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++ + P+ V+ +++ L+D+L D A + L+ + D EA++ +
Sbjct: 188 QTGKV-TRFPI---VLFGSAYWSGLVDWLRDTVVAQGKASERDLLLFHVTDDVDEAVALV 243
Query: 184 AE 185
+
Sbjct: 244 TK 245
>gi|218768935|ref|YP_002343447.1| hypothetical protein NMA2204 [Neisseria meningitidis Z2491]
gi|385327650|ref|YP_005881953.1| hypothetical protein NMBB_0313 [Neisseria meningitidis alpha710]
gi|421549841|ref|ZP_15995851.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 69166]
gi|433470571|ref|ZP_20427971.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 68094]
gi|433474762|ref|ZP_20432110.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 88050]
gi|433476860|ref|ZP_20434188.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 70012]
gi|433478936|ref|ZP_20436235.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 63041]
gi|433512646|ref|ZP_20469448.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 63049]
gi|433514654|ref|ZP_20471430.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2004090]
gi|433516873|ref|ZP_20473626.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 96023]
gi|433519063|ref|ZP_20475789.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 65014]
gi|433521074|ref|ZP_20477775.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 61103]
gi|433523207|ref|ZP_20479879.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 97020]
gi|433525187|ref|ZP_20481833.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 69096]
gi|433527452|ref|ZP_20484065.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM3652]
gi|433529545|ref|ZP_20486144.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM3642]
gi|433531663|ref|ZP_20488232.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2007056]
gi|433533641|ref|ZP_20490190.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2001212]
gi|433538044|ref|ZP_20494531.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 70030]
gi|433540218|ref|ZP_20496675.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 63006]
gi|121052943|emb|CAM09297.1| hypothetical protein NMA2204 [Neisseria meningitidis Z2491]
gi|308388502|gb|ADO30822.1| hypothetical protein NMBB_0313 [Neisseria meningitidis alpha710]
gi|402331792|gb|EJU67124.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 69166]
gi|432212004|gb|ELK67948.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 68094]
gi|432212822|gb|ELK68757.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 88050]
gi|432218013|gb|ELK73878.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 70012]
gi|432218910|gb|ELK74762.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 63041]
gi|432250401|gb|ELL05796.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 63049]
gi|432256087|gb|ELL11412.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 96023]
gi|432256318|gb|ELL11641.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2004090]
gi|432256804|gb|ELL12118.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 65014]
gi|432262540|gb|ELL17778.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 61103]
gi|432262663|gb|ELL17899.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 97020]
gi|432263335|gb|ELL18555.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 69096]
gi|432267521|gb|ELL22699.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM3652]
gi|432269683|gb|ELL24840.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2007056]
gi|432269796|gb|ELL24949.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM3642]
gi|432274194|gb|ELL29287.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2001212]
gi|432276184|gb|ELL31246.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 70030]
gi|432278199|gb|ELL33243.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 63006]
Length = 210
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A KGA AGK V VG +PY + L F+ RK
Sbjct: 65 SGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPHEQKPNPYQ--DIALRFSRFAERKAV 118
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A V +PGG GTLDE+FEIL L+Q G P P +++ +F+
Sbjct: 119 FFRYS--------QAYVVMPGGFGTLDELFEILTLVQ---TGKVPPRPIVLVG-KAFWSG 166
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L +++ + + ASL+ I D E ++YL+E
Sbjct: 167 LAEWINAQLLARGLISEGAASLFAISDDEDEIVAYLSE 204
>gi|309813196|ref|ZP_07706917.1| TIGR00730 family protein [Dermacoccus sp. Ellin185]
gi|308432792|gb|EFP56703.1| TIGR00730 family protein [Dermacoccus sp. Ellin185]
Length = 302
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 43/204 (21%)
Query: 4 DHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+HP Y +G ++ R L +G GPG M+A KGA ++G G +
Sbjct: 126 EHPAYA----VGEQVGRALVKEGFAVVTGGGPGAMEAANKGAFESGGTSVGLGI------ 175
Query: 61 WTASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
LP ET L R+F RK + + LPGGVGT
Sbjct: 176 --------ELPFETGLNRFVNLGVNFRYFFVRKTVFVKYT--------QGAIVLPGGVGT 219
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWK 171
LDEMFE + L+Q +++ + P+ V+ +F+ L ++L G +++ +V +
Sbjct: 220 LDEMFEAITLVQTQKV-THYPI---VLVGTAFWSPLREWLRATVLAEGMISERDVDRM-V 274
Query: 172 ICDSNSEALSYLAEFYDLSSIDKR 195
I D+ EA++++ + + + +R
Sbjct: 275 IVDTAEEAIAFIRDAHRAARAGER 298
>gi|163756142|ref|ZP_02163258.1| hypothetical protein KAOT1_09761 [Kordia algicida OT-1]
gi|161324016|gb|EDP95349.1| hypothetical protein KAOT1_09761 [Kordia algicida OT-1]
Length = 229
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 26/190 (13%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD+ +Y +L +IA + +G GPG+M+A KGA G G VG
Sbjct: 52 PDNKYY----KLAQKIAHTIVDHGYGVITGGGPGIMEAGNKGAHLGG----GTSVGLNIV 103
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ +PY+ + + +F RK + + V +PGG GTLDE+FE
Sbjct: 104 LPFEQHDNPYIDPDKSINFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEA 155
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNS 177
+ LIQ ++I + P+ ++ F+ L+D++ + +G ++ ++ L I D +
Sbjct: 156 ITLIQTKKI-DKFPI---ILVGTEFWSGLMDWVKATLLDKFGNISPGDL-DLIHIVDDET 210
Query: 178 EALSYLAEFY 187
E L+ L FY
Sbjct: 211 EVLAILDAFY 220
>gi|300703618|ref|YP_003745220.1| hypothetical protein RCFBP_11302 [Ralstonia solanacearum CFBP2957]
gi|299071281|emb|CBJ42599.1| conserved protein of unknown function [Ralstonia solanacearum
CFBP2957]
Length = 194
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
Query: 6 PHYLQS-FELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK----VGKEAGE 60
P Y S LG E+A + G GLM V +QAG PV G V KE G
Sbjct: 16 PEYKASAIALGNEMAGRGLTLVYGGGNVGLMGIVADAVLQAGSPVIGIIPESLVRKEVGH 75
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ H RK + D A A +A+PGG+GT +E+FE
Sbjct: 76 KDLTELH---------IVDSMHQRKQMMADRA--------DAFIAMPGGIGTYEELFETF 118
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
+QL G P ++N FY KLL F+ D G + + A L + D + AL
Sbjct: 119 TWLQLGYHGK----PIGLLNVAGFYDKLLAFIDHAVDEGFLMRHH-ADLLHVSD-DPGAL 172
Query: 181 SYLAEFYDLSSIDK 194
L E ++DK
Sbjct: 173 IDLLERAPREAVDK 186
>gi|225026564|ref|ZP_03715756.1| hypothetical protein EUBHAL_00814 [Eubacterium hallii DSM 3353]
gi|224956113|gb|EEG37322.1| TIGR00730 family protein [Eubacterium hallii DSM 3353]
Length = 199
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 8 YLQSFE-LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
Y+ + E LG EIA+ + G GLM A G ++ G V G +
Sbjct: 35 YINAAEALGKEIAKRHHKLIYGGGASGLMGACANGVLENGGEVTGV---------VPTFM 85
Query: 67 HPYLPLETYLT----CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ + P+++ T S RK V ++ D A V PGG+GT DE F+IL L
Sbjct: 86 NKFEPIKSECTEIVRTETMSLRKE------VMEENAD--AFVIAPGGIGTFDEFFQILTL 137
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+L R P +V N FY + + G + ++ V SL+ +C++ E L+
Sbjct: 138 TELGRSAK----PIIVYNVSGFYDDTIAIIDKLIGMGFI-RESVKSLFSVCETPEEVLNA 192
Query: 183 L 183
+
Sbjct: 193 I 193
>gi|15606913|ref|NP_214294.1| hypothetical protein aq_1884 [Aquifex aeolicus VF5]
gi|2984162|gb|AAC07696.1| hypothetical protein aq_1884 [Aquifex aeolicus VF5]
Length = 250
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH 67
Y +F LG L T +G GPG+M+A +GA +G G + ++
Sbjct: 62 YETAFNLGK-----LGFTIITGGGPGIMEAANRGAYDSGTESIGLNIDIPREQF------ 110
Query: 68 PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLER 127
P L ++F RK L+ A+ A V PGG GT DE+FE L LIQ
Sbjct: 111 PNKYQTKNLKFKYFFVRKVMLLKYAM--------AYVIFPGGFGTFDELFEALTLIQ--- 159
Query: 128 IGSELPVPFLVMNYDSFYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEALSYL 183
G P L++ +Y LL F+ + +GT+ K+++ +L + D + + ++
Sbjct: 160 TGKSHKFP-LILFGSEYYSHLLKFMEEVMVKFGTIDKEDI-NLMVLVDDPRDVVKHI 214
>gi|416168004|ref|ZP_11607834.1| hypothetical protein TIGR00730 [Neisseria meningitidis OX99.30304]
gi|416186311|ref|ZP_11613672.1| hypothetical protein TIGR00730 [Neisseria meningitidis M0579]
gi|418287501|ref|ZP_12900094.1| hypothetical protein TIGR00730 [Neisseria meningitidis NM233]
gi|418289749|ref|ZP_12901996.1| hypothetical protein TIGR00730 [Neisseria meningitidis NM220]
gi|433504159|ref|ZP_20461104.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 9506]
gi|433535939|ref|ZP_20492458.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 77221]
gi|325131010|gb|EGC53737.1| hypothetical protein TIGR00730 [Neisseria meningitidis OX99.30304]
gi|325137110|gb|EGC59706.1| hypothetical protein TIGR00730 [Neisseria meningitidis M0579]
gi|372203010|gb|EHP16751.1| hypothetical protein TIGR00730 [Neisseria meningitidis NM220]
gi|372203703|gb|EHP17321.1| hypothetical protein TIGR00730 [Neisseria meningitidis NM233]
gi|432243542|gb|ELK99053.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 9506]
gi|432276360|gb|ELL31418.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 77221]
Length = 210
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHADYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + ASL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPIVLVG-KAFWSGLAEWINAQLLARGLISEGAASLFAISDDEDEIVAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|254381837|ref|ZP_04997200.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194340745|gb|EDX21711.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 252
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 27/186 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG 59
D P Y +G L+D +G GPG M+A KGA +A G VG G ++ E G
Sbjct: 86 DSPEYEAGVRIG---HALVDAGFAVITGGGPGAMEAANKGAREANGVSVGLGIELPFEQG 142
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
N H ++ L R+F RK + + V LPGG+GTLDEMFE
Sbjct: 143 ----LNQH----VDLGLNFRYFFVRKTMFVKYS--------QGFVVLPGGLGTLDEMFEA 186
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L+Q ++I + P+ V+ ++ L+D+L + A + L+ + D EA
Sbjct: 187 LTLVQTQKI-TRFPI---VLFGTEYWGGLIDWLKNTVIAQGKASERDLYLFHVTDDVDEA 242
Query: 180 LSYLAE 185
++ + +
Sbjct: 243 IALVTK 248
>gi|386817339|ref|ZP_10104557.1| hypothetical protein Thini_3233 [Thiothrix nivea DSM 5205]
gi|386421915|gb|EIJ35750.1| hypothetical protein Thini_3233 [Thiothrix nivea DSM 5205]
Length = 241
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PD P Y L +IA L + SG GPGLM+A KGA Q P G + +
Sbjct: 58 PDDPLY----RLTEDIAHKLSNAGFAVVSGGGPGLMEAANKGAQQGKSPSIGLNI-QLPH 112
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
E + + + L R F +RK + A +A V +PGG GTLDE+ EI
Sbjct: 113 EQHGNAYQ-----DISLYFRHFFSRKVMFVKHA--------SAYVVMPGGFGTLDELAEI 159
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q + +P+ ++ + F++ L++ F GT++ ++ L+ + D
Sbjct: 160 LTLVQTAKT-RRIPI---ILVHSPFWEGLVEWFRNTLVKQGTISPKDL-DLFVMLDEADA 214
Query: 179 ALSYLAEFYD 188
+ ++ +Y+
Sbjct: 215 IVGHIFAYYE 224
>gi|145219231|ref|YP_001129940.1| hypothetical protein Cvib_0416 [Chlorobium phaeovibrioides DSM 265]
gi|145205395|gb|ABP36438.1| conserved hypothetical protein 730 [Chlorobium phaeovibrioides DSM
265]
Length = 243
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 14 LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE 73
LGG +AR + +G GPG+M+ +GA +AG GF + K + A+ Y+ ++
Sbjct: 78 LGGMLARE-GFSVITGGGPGVMEGANRGAQEAGGVSIGFNI-KLPNQQAANR---YIDVD 132
Query: 74 TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP 133
++ ++F RK + + A +ALPGG GTLDE+ E + LIQ + P
Sbjct: 133 KLVSFQYFFVRKVMFLKYS--------QAFIALPGGFGTLDEVSEAMTLIQTGK-SERFP 183
Query: 134 VPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
V + +Y + FY+ + + + ++ G ++ ++ ++ + D E +S + +FY
Sbjct: 184 VILVGKSYWEGFYRWVQESM--LQENGFISPPDLGFIY-LEDDPEEVISIIKKFY 235
>gi|319943200|ref|ZP_08017483.1| methionyl-tRNA formyltransferase [Lautropia mirabilis ATCC 51599]
gi|319743742|gb|EFV96146.1| methionyl-tRNA formyltransferase [Lautropia mirabilis ATCC 51599]
Length = 249
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ PDH Y ++ L +++ SG GPGLM+A KGA G +
Sbjct: 64 IKPDHRWYKETETLARKLSDA-GFAVISGGGPGLMEAANKGAFAGASASVGLNMELP--- 119
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ +PY + L R F RK + A VA PGG GTLDE+ E+L
Sbjct: 120 -NEQHDNPYQ--DVSLHFRHFFPRKV--------AFAKYAAAFVAAPGGWGTLDELMEVL 168
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEA 179
LIQ R+G +PV ++ +F+K LLD++ D GTV+ ++ L ++ D E
Sbjct: 169 TLIQ-TRVGRRIPV---ILVGSTFWKGLLDWMNDTLVAHGTVSAADM-ELIRVIDDPDEV 223
Query: 180 LSYLAEFYD 188
++ + +FY
Sbjct: 224 VNAIFDFYQ 232
>gi|398383347|ref|ZP_10541418.1| TIGR00730 family protein [Sphingobium sp. AP49]
gi|397724949|gb|EJK85408.1| TIGR00730 family protein [Sphingobium sp. AP49]
Length = 292
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 20/161 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA+ G+ G + + A N ++ E +F+ RK H
Sbjct: 142 SGGGPSIMEAANRGAVDVGQTTIGMNIVLPHEQ--APNL--FVTPELSFQFHYFALRKMH 197
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GT DEMFE+L LIQ G P+P L+ D F+
Sbjct: 198 FLLRA---------RALAVFPGGFGTFDEMFELLTLIQ---TGKMKPIPILLFGKD-FWN 244
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFY 187
K++DF D G ++ ++ +L ++ +A + + FY
Sbjct: 245 KVVDFEA-LADEGVISHADL-NLLTWVETAEDAWAAVQAFY 283
>gi|300781499|ref|ZP_07091353.1| Rossmann fold nucleotide-binding protein [Corynebacterium
genitalium ATCC 33030]
gi|300533206|gb|EFK54267.1| Rossmann fold nucleotide-binding protein [Corynebacterium
genitalium ATCC 33030]
Length = 265
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 33/204 (16%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDC--TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGK 56
+G P Y Q+ ELG L+D +G GPGLM+ +GA +A G VG G ++
Sbjct: 83 LGEGTPEYEQARELG---KALVDAGYAVITGGGPGLMEGPNRGAHEAEGMSVGLGIELPF 139
Query: 57 EAG--EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
E G +W ++ L R+F ARK + + ++LPGG GT+D
Sbjct: 140 EQGLNDW----------VDLGLNFRYFFARKTMFLKYS--------QGFISLPGGYGTMD 181
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKIC 173
E+FE+L +IQ ++ + P +V+ F+ L+D++ G G ++ + L+ +
Sbjct: 182 EVFEVLCMIQTGKV-TNFP---MVLLGTEFWSGLVDWIRGQQLARGLISPGD-DELFLVT 236
Query: 174 DSNSEALSYLAEFYDLSSIDKRVH 197
DS EA+ Y+ + + + +H
Sbjct: 237 DSVEEAVEYICASHREMTDPRNIH 260
>gi|374600330|ref|ZP_09673332.1| Conserved hypothetical protein CHP00730 [Myroides odoratus DSM
2801]
gi|423326071|ref|ZP_17303911.1| TIGR00730 family protein [Myroides odoratimimus CIP 103059]
gi|373911800|gb|EHQ43649.1| Conserved hypothetical protein CHP00730 [Myroides odoratus DSM
2801]
gi|404604739|gb|EKB04356.1| TIGR00730 family protein [Myroides odoratimimus CIP 103059]
Length = 240
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ P+Y + E+ ++++ +G GPG+M+A KGA G+ G VG
Sbjct: 64 EDPYYKLAEEIAFKVSKA-GYGVITGGGPGIMEAGNKGA-HLGQ---GVSVGLNIELPFE 118
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+F+PY+ + + +F RK + + V +PGG GTLDE+FE + LI
Sbjct: 119 QHFNPYIDSDKNIQFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITLI 170
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALS 181
Q ++I P +++ D F+ +L+++ + + T++ +++ +L ++ D+ E +
Sbjct: 171 QTKKIAK---FPIILVGTD-FWGGMLEWVKNVLLAKYSTISPEDM-NLIQLVDTADEVVE 225
Query: 182 YLAEFY 187
+ FY
Sbjct: 226 RIDAFY 231
>gi|407799064|ref|ZP_11145966.1| hypothetical protein OCGS_1039 [Oceaniovalibus guishaninsula
JLT2003]
gi|407059070|gb|EKE45004.1| hypothetical protein OCGS_1039 [Oceaniovalibus guishaninsula
JLT2003]
Length = 287
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 34/164 (20%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKV----GKEAGEWTAS----NFHPYLPLETYLTCR 79
+G GPG+M+A +GA +AG G V + E+ NFH
Sbjct: 128 TGGGPGVMEAGNRGAAEAGGRSIGLNVVLPHEQAPNEYVTPGLCFNFH------------ 175
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F+ RK + A A+ PGG GTLDE+FE L LIQ R+ VP L+
Sbjct: 176 YFAIRKMHFLMRA--------RAICVFPGGFGTLDELFETLTLIQTGRMER---VPVLLF 224
Query: 140 NYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
D F++ ++++ D GT+A D++ L++ ++ +EAL +
Sbjct: 225 GGD-FWRDIVNWQA-LADAGTIAPDDLG-LFRFVETAAEALEAI 265
>gi|261400515|ref|ZP_05986640.1| methionyl-tRNA formyltransferase [Neisseria lactamica ATCC 23970]
gi|421862636|ref|ZP_16294341.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|269209777|gb|EEZ76232.1| methionyl-tRNA formyltransferase [Neisseria lactamica ATCC 23970]
gi|309379760|emb|CBX21536.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 210
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHADYTFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + ASL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGLISEGAASLFAISDDEDEIVAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|338210535|ref|YP_004654584.1| hypothetical protein [Runella slithyformis DSM 19594]
gi|336304350|gb|AEI47452.1| Conserved hypothetical protein CHP00730 [Runella slithyformis DSM
19594]
Length = 195
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 27/187 (14%)
Query: 5 HPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKEAG 59
P YLQ + E+G +A+ + G GLM AV G + G V G F E
Sbjct: 15 RPEYLQLATEVGLAMAKRGINLVYGGGNLGLMRAVADGTLAGGAQVTGIIPNFLAELEVA 74
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
T + H RK ++ + V+ LPGG GTLDEMFEI
Sbjct: 75 HQTLTEIH---------FVDTMHERKAKMVSLS--------DGVINLPGGYGTLDEMFEI 117
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
LA QL+ P ++NY+ FY LL + + G + K E L + D+ E
Sbjct: 118 LAWAQLKIFHG----PVGLLNYNGFYNNLLAHMEVMVEEGFL-KPENRDLLIVADNIEEL 172
Query: 180 LSYLAEF 186
L + F
Sbjct: 173 LDKMQAF 179
>gi|319778282|ref|YP_004129195.1| hypothetical protein TEQUI_0096 [Taylorella equigenitalis MCE9]
gi|397662062|ref|YP_006502762.1| hypothetical protein KUI_1090 [Taylorella equigenitalis ATCC 35865]
gi|317108306|gb|ADU91052.1| hypothetical protein TEQUI_0096 [Taylorella equigenitalis MCE9]
gi|394350241|gb|AFN36155.1| hypothetical protein KUI_1090 [Taylorella equigenitalis ATCC 35865]
gi|399114739|emb|CCG17534.1| conserved hypothetical protein [Taylorella equigenitalis 14/56]
Length = 222
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 21/186 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y+ + ++ ++A T SG GPG+M+A KGA + V G +G
Sbjct: 45 DDPFYILTTDISRKLASA-GFTIISGGGPGIMEAANKGAHE----VNGNSIGLNIKLPNE 99
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ +P+ Y ++F +RK + A + +PGG GT+DE+FE L L+
Sbjct: 100 TTNNPFQSQSIYF--KYFVSRKTTFF--------MNSWAYIIMPGGFGTMDELFEALTLV 149
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q + + P+ V+ SF+ L++F+ + G ++ ++ L + D L
Sbjct: 150 QTGK-ANRAPI---VLVGTSFWTGLIEFIKNNLLGNGYISAKDI-DLISVTDDADLVLDI 204
Query: 183 LAEFYD 188
++ +YD
Sbjct: 205 VSTYYD 210
>gi|192289496|ref|YP_001990101.1| hypothetical protein Rpal_1077 [Rhodopseudomonas palustris TIE-1]
gi|192283245|gb|ACE99625.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
Length = 276
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 21 LLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRF 80
+ D +G GPG+M+A +GA A P GF + + P L + +
Sbjct: 107 IRDNVIATGGGPGIMEAANRGANDASAPSIGFNITLPHEQQPNRYSTPELTFRFH----Y 162
Query: 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140
F+ RK L A+R + A+VA PGG GTLDE+FEIL L Q ++ P +V+
Sbjct: 163 FAMRKMHL---AMRAN-----ALVAFPGGFGTLDELFEILTLRQTKKS----PAIPIVLF 210
Query: 141 YDSFYKKLLDF 151
+ +++ +++F
Sbjct: 211 DEQYWRSVVNF 221
>gi|415720900|ref|ZP_11468144.1| hypothetical protein CGSMWGv00703Bmash_01679 [Gardnerella vaginalis
00703Bmash]
gi|388061161|gb|EIK83818.1| hypothetical protein CGSMWGv00703Bmash_01679 [Gardnerella vaginalis
00703Bmash]
Length = 278
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 110 PDEPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 168
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 169 NKW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 210
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 211 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 240
>gi|415703232|ref|ZP_11459110.1| hypothetical protein CGSMWGv284V_03327 [Gardnerella vaginalis 284V]
gi|388052692|gb|EIK75707.1| hypothetical protein CGSMWGv284V_03327 [Gardnerella vaginalis 284V]
Length = 284
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 116 PDDPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 174
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 175 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 216
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 217 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 246
>gi|333983508|ref|YP_004512718.1| hypothetical protein [Methylomonas methanica MC09]
gi|333807549|gb|AEG00219.1| Conserved hypothetical protein CHP00730 [Methylomonas methanica
MC09]
Length = 325
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 23 DCT--TWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRF 80
DC +G GPG+M+A +GA G G + ++ +PY+ + +
Sbjct: 164 DCRLLVMTGGGPGMMEAANRGAFDVGAKTVGLNITLPHEQFP----NPYVTPDLCFRFHY 219
Query: 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140
F+ RK + A A+V PGG GT DE+FE L LIQ I P+P +++
Sbjct: 220 FAMRKMHFLLRA--------KALVVFPGGYGTFDELFETLTLIQTRTIK---PLPIVLVG 268
Query: 141 YDSFYKKL-LDFL 152
D + K +DFL
Sbjct: 269 RDYWRKAFDVDFL 281
>gi|399926811|ref|ZP_10784169.1| hypothetical protein MinjM_07276 [Myroides injenensis M09-0166]
Length = 242
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ P+Y + E+ ++++ +G GPG+M+A KGA G+ G VG
Sbjct: 66 EDPYYKLAEEIAFKVSKA-GYGVITGGGPGIMEAGNKGA-HLGE---GISVGLNIELPFE 120
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+F+PY+ + + +F RK + + V +PGG GTLDE+FE + LI
Sbjct: 121 QHFNPYIDNDKNMQFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAITLI 172
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC--EDWGTVAKDEVASLWKICDSNSEALS 181
Q ++I P +++ D F+ L+D++ E + +++ L K+ D+ E +
Sbjct: 173 QTKKIAK---FPIVLVGTD-FWGGLIDWIKSTLLEKHNNICAEDM-DLIKLVDTADEVIE 227
Query: 182 YLAEFY 187
+ FY
Sbjct: 228 VIDAFY 233
>gi|415705141|ref|ZP_11460412.1| hypothetical protein CGSMWGv75712_03390 [Gardnerella vaginalis
75712]
gi|388051863|gb|EIK74887.1| hypothetical protein CGSMWGv75712_03390 [Gardnerella vaginalis
75712]
Length = 289
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 121 PDDPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 179
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 180 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 221
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 222 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 251
>gi|345851200|ref|ZP_08804181.1| hypothetical protein SZN_15648 [Streptomyces zinciresistens K42]
gi|345637354|gb|EGX58880.1| hypothetical protein SZN_15648 [Streptomyces zinciresistens K42]
Length = 252
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG M+A KGA +AG G VG + Y+ + L R+F RK
Sbjct: 109 TGGGPGAMEAANKGACEAG----GISVGLGIELPFEQGLNSYV--DIGLNFRYFFVRKMM 162
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A V LPGG+GTLDE+FE L L+Q +++ + P+ V+ +++
Sbjct: 163 FVKYA--------QGFVVLPGGLGTLDELFEALTLVQTQKV-TRFPI---VLFGAAYWGG 210
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L+D+L D A ++ L+ + D EA++ +++
Sbjct: 211 LVDWLKDTLVAEGKASEKDLLLFHVTDDVDEAVALVSK 248
>gi|294631231|ref|ZP_06709791.1| decarboxylase [Streptomyces sp. e14]
gi|292834564|gb|EFF92913.1| decarboxylase [Streptomyces sp. e14]
Length = 252
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 27/186 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P Y LG + +G GPG M+A KGA +AG G VG
Sbjct: 86 DSPEYEAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGACEAG----GTSVGLGIELPFE 140
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + L R+F RK + A V LPGG+GTLDE+FE L L+
Sbjct: 141 QGLNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALTLV 190
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVA----SLWKICDSNSEA 179
Q +++ + P+ V+ ++ L+++L + +A+ + A +L+ + D EA
Sbjct: 191 QTKKV-TRFPI---VLFGTKYWGGLVNWLENT----LIAEGKAAAADLTLFHVTDDVEEA 242
Query: 180 LSYLAE 185
++ +++
Sbjct: 243 VALMSK 248
>gi|308235193|ref|ZP_07665930.1| hypothetical protein GvagA14_03028 [Gardnerella vaginalis ATCC
14018 = JCM 11026]
gi|311114849|ref|YP_003986070.1| methionyl-tRNA formyltransferase [Gardnerella vaginalis ATCC 14019]
gi|310946343|gb|ADP39047.1| methionyl-tRNA formyltransferase [Gardnerella vaginalis ATCC 14019]
Length = 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 121 PDDPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 179
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 180 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 221
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 222 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 251
>gi|213964576|ref|ZP_03392776.1| lysine decarboxylase family protein [Corynebacterium amycolatum
SK46]
gi|213952769|gb|EEB64151.1| lysine decarboxylase family protein [Corynebacterium amycolatum
SK46]
Length = 275
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 27/184 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA--G 59
D P+Y F+LG +A T +G GPG+M+A +G A G +G G ++ E
Sbjct: 85 DSPYYQWGFDLGKALAEA-GYATITGGGPGIMEAANRGCYDADGLSIGLGIELPHEQHLN 143
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+W ++ + R+F RK + + A + LPGG GTLDE+FE
Sbjct: 144 DW----------VDLGMNFRYFFVRKTMFLKYS--------QAFICLPGGFGTLDELFES 185
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L ++Q E++ + P +++ + F+ L+D++ + + L+ + DS EA
Sbjct: 186 LVMVQTEKVENH---PIVLLGTE-FWSGLVDWMREKLVAMELISPTDMDLFLVTDSIEEA 241
Query: 180 LSYL 183
+ Y+
Sbjct: 242 VEYI 245
>gi|29829666|ref|NP_824300.1| hypothetical protein SAV_3124 [Streptomyces avermitilis MA-4680]
gi|29606774|dbj|BAC70835.1| hypothetical protein SAV_3124 [Streptomyces avermitilis MA-4680]
Length = 252
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 29/187 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEA 58
D P Y E G + R L W +G GPG M+A KGA +A G VG G ++ E
Sbjct: 86 DSPEY----EAGVRLGRGLVEAGWAVITGGGPGAMEAANKGACEAKGISVGLGIELPFEQ 141
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
G +PY+ + L R+F RK + A V LPGG+GTLDE FE
Sbjct: 142 G------LNPYV--DIGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDEFFE 185
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q +++ + P+ V+ ++ L+D+L A ++ L+ + D E
Sbjct: 186 ALTLVQTQKV-TRFPI---VLFGTEYWGGLVDWLKHTLVGQGKAAEKDLLLFHLTDDVDE 241
Query: 179 ALSYLAE 185
A+ +++
Sbjct: 242 AVGLVSK 248
>gi|83746275|ref|ZP_00943328.1| Lysine decarboxylase family [Ralstonia solanacearum UW551]
gi|207742709|ref|YP_002259101.1| hypothetical protein 730 [Ralstonia solanacearum IPO1609]
gi|386333013|ref|YP_006029182.1| hypothetical protein RSPO_c01346 [Ralstonia solanacearum Po82]
gi|421897848|ref|ZP_16328215.1| conserved hypothetical protein 730 [Ralstonia solanacearum MolK2]
gi|83727025|gb|EAP74150.1| Lysine decarboxylase family [Ralstonia solanacearum UW551]
gi|206589054|emb|CAQ36016.1| conserved hypothetical protein 730 [Ralstonia solanacearum MolK2]
gi|206594103|emb|CAQ61030.1| conserved hypothetical protein 730 [Ralstonia solanacearum IPO1609]
gi|334195461|gb|AEG68646.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
Length = 194
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK----VGKEAGEWTASNF 66
+ LG E+A + G GLM V +QAG+PV G V KE G +
Sbjct: 22 AIALGNEMAGRGLTLVYGGGNVGLMGIVADAVLQAGRPVIGIIPESLVRKEVGHKDLTEL 81
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
H RK + D A A +A+PGG+GT +E+FE +QL
Sbjct: 82 H---------IVDSMHQRKQMMADRA--------DAFIAMPGGIGTYEELFETFTWLQLG 124
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
G P ++N FY KL+ F+ D G + + A L + D + AL L E
Sbjct: 125 YHGK----PIGLLNVAGFYDKLIAFIDHAVDEGFLMRHH-ADLLHVSD-DPGALIDLLER 178
Query: 187 YDLSSIDK 194
++DK
Sbjct: 179 APRDAVDK 186
>gi|419796229|ref|ZP_14321785.1| TIGR00730 family protein [Neisseria sicca VK64]
gi|385699696|gb|EIG29977.1| TIGR00730 family protein [Neisseria sicca VK64]
Length = 242
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 27/189 (14%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+HP Y E +AR L + SG GPG+M+A KGA P G + +
Sbjct: 60 NHPDY----EFTLRLARKLSDAGFSVISGGGPGIMEAANKGAFAGASPAVGLNIVLPHEQ 115
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY L + + F RK + AV A V +PGG GTLDE+FE L
Sbjct: 116 ----KANPYQDLS--IKFQHFFPRKVMFVKHAV--------AYVVMPGGFGTLDELFESL 161
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G P +++ D F+ LLD++ + G +A+ ++ L ++ DS E
Sbjct: 162 TLVQ---TGKTPDRPIILVGKD-FWSGLLDWIRKELLGRGLIAEADM-DLIRLIDSEDEI 216
Query: 180 LSYLAEFYD 188
+ + Y+
Sbjct: 217 IEEIFAHYE 225
>gi|421537321|ref|ZP_15983509.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 93003]
gi|421558317|ref|ZP_16004200.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 92045]
gi|402319798|gb|EJU55303.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 93003]
gi|402338499|gb|EJU73732.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 92045]
Length = 210
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHADYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + ASL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGLISEGAASLFAISDDEDEIVAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|417556663|ref|ZP_12207720.1| TIGR00730 family protein [Gardnerella vaginalis 315-A]
gi|333602351|gb|EGL13781.1| TIGR00730 family protein [Gardnerella vaginalis 315-A]
Length = 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 121 PDDPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 179
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 180 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 221
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 222 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 251
>gi|390956389|ref|YP_006420146.1| hypothetical protein Terro_0469 [Terriglobus roseus DSM 18391]
gi|390411307|gb|AFL86811.1| TIGR00730 family protein [Terriglobus roseus DSM 18391]
Length = 321
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A +GA +AG G +G +PY+ +F RK
Sbjct: 145 SGGGPGIMEAANRGAFEAG----GKTIGLNIALPFEQRPNPYITPALNFQFHYFFMRKFW 200
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
A A+V PGG GTLDEMFE+L L Q ++ ++ + V+ +++
Sbjct: 201 FAYLA--------KALVVFPGGFGTLDEMFELLTLAQTHKMAKDMTI---VIYGSDYWRG 249
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+++ E KD+ L++ D+ A + L E
Sbjct: 250 VINLDLLAEKGAIAMKDK--DLFRFADTPEAAFAILRE 285
>gi|424851411|ref|ZP_18275808.1| lysine decarboxylase [Rhodococcus opacus PD630]
gi|356666076|gb|EHI46147.1| lysine decarboxylase [Rhodococcus opacus PD630]
Length = 266
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA ++G G+ +G + ++ L + R+F ARK
Sbjct: 110 TGGGPGVMEAANRGASESG----GYSIGLGIELPFEEGLNEWVDLG--INFRYFFARKTM 163
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ + A + LPGG GTLDE+FE L L+Q ++ + P+ Y +
Sbjct: 164 FVKYS--------QAFICLPGGFGTLDELFEALTLVQTRKV-TRFPIVLFGTEY---WSG 211
Query: 148 LLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
L+D+L G + G +++ +V +L + DS EA+ +
Sbjct: 212 LVDWLRGTLQRSGKISEGDV-NLLHVTDSVEEAVQIV 247
>gi|46201741|ref|ZP_00054438.2| COG1611: Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magnetotacticum MS-1]
Length = 298
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82
D +G GPG+M+A +GA +GG +G + Y+ E +F+
Sbjct: 148 DFVVKTGGGPGIMEAANRGA----DDLGGKSIGLNIVLPMEQEPNSYITPELCFRFHYFA 203
Query: 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142
RK + + A+V PGG GTLDE+FE LIQ +I P+P L+ +
Sbjct: 204 IRKMHFLTRS--------KALVVFPGGFGTLDELFEAATLIQTGKIE---PIPILLFGRE 252
Query: 143 SFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++++++ + A+D+ ++ ++ EA + +A+FY L
Sbjct: 253 -YWERVINIDAMISEGMVAAEDK--DIFTFVETAEEAWNCIADFYRL 296
>gi|296123882|ref|YP_003631660.1| hypothetical protein Plim_3649 [Planctomyces limnophilus DSM 3776]
gi|296016222|gb|ADG69461.1| conserved hypothetical protein [Planctomyces limnophilus DSM 3776]
Length = 359
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 33/193 (17%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVG---GFKVGKE 57
+HP YL S E G RL+ W +GAG G+M+ GA G P+ + E
Sbjct: 90 NHPDYLSSVEFG----RLMARNNWMVLTGAGSGIMEGAHVGA---GLPMSMGVNILLPFE 142
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ + P L +T RFF RK + + A+V PGG GTLDE+F
Sbjct: 143 QQANSVIDGDPKL-----VTFRFFFTRKLMFVK--------EVHAIVVYPGGFGTLDELF 189
Query: 118 EILALIQLERIGSELPVPFLVMNYD--SFYKKLLDFLG-DCEDWGTVAKDEVASLWKICD 174
E L LIQ G +P ++++ +++ L DF+ + G ++ ++ SL++I
Sbjct: 190 ETLTLIQ---TGKRDMLPIVLVDQPDCNYWCALQDFIRHQLLERGLISPADL-SLYRIVH 245
Query: 175 SNSEALSYLAEFY 187
S + A+S + FY
Sbjct: 246 SPAAAVSEVLSFY 258
>gi|427712648|ref|YP_007061272.1| Rossmann fold nucleotide-binding protein [Synechococcus sp. PCC
6312]
gi|427376777|gb|AFY60729.1| putative Rossmann fold nucleotide-binding protein [Synechococcus
sp. PCC 6312]
Length = 362
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+GAGPG+M+A KGA ++ E G + P L + ++F RK
Sbjct: 111 TGAGPGIMEAGNKGAAPGHSFGLNIELPFEPGANSFIEGDPRL-----IHFKYFFTRKLF 165
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD--SFY 145
L+ + AV PGG GTLDE FE L L Q G P+P ++++ +++
Sbjct: 166 LLK--------ESDAVAIFPGGFGTLDEAFECLTLCQ---TGKSPPIPMVLVDRPGGTYW 214
Query: 146 KKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSIDKRVHE 198
+ D++ + DE L+ I DS +AL+ L FY + + V+E
Sbjct: 215 QNWHDYIQRELKGNGLISDEDDQLYTITDSVEQALTNLGNFYRVYHSCRYVNE 267
>gi|149196232|ref|ZP_01873287.1| hypothetical protein LNTAR_13782 [Lentisphaera araneosa HTCC2155]
gi|149140493|gb|EDM28891.1| hypothetical protein LNTAR_13782 [Lentisphaera araneosa HTCC2155]
Length = 273
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 80/198 (40%), Gaps = 34/198 (17%)
Query: 12 FELGGEIARLLDCTTWS-----------GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+E E+A +L T WS G GPG+M+A GA + G +G
Sbjct: 93 YEDAAELAEML--TKWSIENDFGYYICSGGGPGIMEAANLGATRVED---GQSIGLNISL 147
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY+ E +F RK A A+V PGG GT DE FEIL
Sbjct: 148 PFEQEPNPYISSELNFEFNYFFIRKFWFTYLA--------KAIVVFPGGFGTFDEFFEIL 199
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
LIQ + +P+ V+ F+ +++F E KD +W DS E
Sbjct: 200 TLIQTGKTTKTIPI---VLYGKEFWSNIVNFDYLVEAGVICEKDLDLFIW--ADSPKEVF 254
Query: 181 SYL-AEFYDLSSIDKRVH 197
YL AE + +R+H
Sbjct: 255 DYLTAEL----KLQRRLH 268
>gi|415708755|ref|ZP_11462769.1| hypothetical protein CGSMWGv6420LIT_05378 [Gardnerella vaginalis
6420LIT]
gi|415709149|ref|ZP_11462882.1| hypothetical protein CGSMWGv6420B_00525 [Gardnerella vaginalis
6420B]
gi|388054654|gb|EIK77592.1| hypothetical protein CGSMWGv6420LIT_05378 [Gardnerella vaginalis
6420LIT]
gi|388056563|gb|EIK79426.1| hypothetical protein CGSMWGv6420B_00525 [Gardnerella vaginalis
6420B]
Length = 268
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 23/151 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
D P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 104 DDPEYSLARTMGSELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQG-- 160
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ L + R+F RK + + + ++ PGG GT+DEMFE L
Sbjct: 161 ----LNKWINLG--MQFRYFFVRKTMFMKYS--------SGIIVCPGGFGTMDEMFEALT 206
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++ + +PV V+ S++ L+D+L
Sbjct: 207 LVQTHKV-ARVPV---VLFGTSYWNGLIDWL 233
>gi|407648333|ref|YP_006812092.1| hypothetical protein O3I_035855 [Nocardia brasiliensis ATCC 700358]
gi|407311217|gb|AFU05118.1| hypothetical protein O3I_035855 [Nocardia brasiliensis ATCC 700358]
Length = 269
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 19/153 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHP Y +G +AR +G GPG M+AV +GA +AG G+ +G
Sbjct: 89 PDHPEYQAGLAIGAALARA-GFAVITGGGPGAMEAVNRGACEAG----GYSIGLGIELPF 143
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ + ++ L + R+F RK + + A + LPGG GTLDE+FE L L
Sbjct: 144 EQSLNEWVDLG--INFRYFFVRKTMFVKYS--------EAFICLPGGFGTLDELFEALTL 193
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
+Q +I + P+ ++ ++ L+D++ D
Sbjct: 194 VQTRKI-TRFPI---ILFGSRYWAGLVDWMRDS 222
>gi|385801556|ref|YP_005837959.1| hypothetical protein HMPREF9231_0610 [Gardnerella vaginalis
HMP9231]
gi|333393475|gb|AEF31393.1| TIGR00730 family protein [Gardnerella vaginalis HMP9231]
Length = 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 121 PDAPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 179
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 180 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 221
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 222 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 251
>gi|415717576|ref|ZP_11466939.1| hypothetical protein CGSMWGv1500E_01733 [Gardnerella vaginalis
1500E]
gi|388060923|gb|EIK83598.1| hypothetical protein CGSMWGv1500E_01733 [Gardnerella vaginalis
1500E]
Length = 267
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 27/152 (17%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG--E 60
P Y+ + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G +
Sbjct: 104 EPEYMAALTMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGLNQ 162
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
W + + R+F RK + + + ++ PGG GT+DEMFE L
Sbjct: 163 W----------INLGMQFRYFFVRKTMFMKYS--------SGIIVCPGGFGTMDEMFEAL 204
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++ + +PV V+ ++K L+++L
Sbjct: 205 TLVQTHKV-ARVPV---VLFGTEYWKGLINWL 232
>gi|386852563|ref|YP_006270576.1| hypothetical protein ACPL_7628 [Actinoplanes sp. SE50/110]
gi|359840067|gb|AEV88508.1| hypothetical protein ACPL_7628 [Actinoplanes sp. SE50/110]
Length = 255
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 37/190 (19%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PD P + LG +A +G GPG+M+A +GA +AG G VG
Sbjct: 84 PDSPECELATRLGAALAEA-GYAVITGGGPGVMEAANRGATEAG----GMSVG------- 131
Query: 63 ASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
LP E L R+F RK + A A V LPGG GTLD
Sbjct: 132 ---LGIELPFEQGLNDWVDIGIDFRYFFVRKTMFVKYA--------QAFVVLPGGFGTLD 180
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCEDWGTVAKDEVASLWKIC 173
E+FE + L+Q ++ P ++M D ++ LLD++ D G +++ ++ L ++
Sbjct: 181 ELFEAITLVQTRKVTR---FPVILMGVD-YWSGLLDWIKRRMLDDGKISEADLG-LIQVT 235
Query: 174 DSNSEALSYL 183
D +EA+ +
Sbjct: 236 DDVTEAVRII 245
>gi|415707075|ref|ZP_11461922.1| hypothetical protein CGSMWGv0288E_04421 [Gardnerella vaginalis
0288E]
gi|388054075|gb|EIK77020.1| hypothetical protein CGSMWGv0288E_04421 [Gardnerella vaginalis
0288E]
Length = 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 121 PDAPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 179
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 180 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 221
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 222 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 251
>gi|254674147|emb|CBA09931.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 210
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHADYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAAFFSYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + SL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLVRGLISEGAVSLFAISDDEDEIVAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|421737316|ref|ZP_16175949.1| lysine decarboxylase family protein, partial [Bifidobacterium
bifidum IPLA 20015]
gi|407295399|gb|EKF15148.1| lysine decarboxylase family protein, partial [Bifidobacterium
bifidum IPLA 20015]
Length = 185
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EW 61
P Y + +G IA+ +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 21 PDYKAARRMGRGIAKH-GVAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW 79
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ R+F RK + + + V+ PGG GT DEMFE+L
Sbjct: 80 ----------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTFDEMFELLT 121
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ S +P+ V+ +++ L ++L +D G ++ + SL I D EA+
Sbjct: 122 LVQTHKVMS-MPI---VLYGTEYWRGLFEWLTSTVQDHGMISPLD-PSLVLITDDPDEAV 176
>gi|372221127|ref|ZP_09499548.1| hypothetical protein MzeaS_02347 [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 193
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 21/194 (10%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQ-AGKPVGGFKVGKEAGE 60
G D+ L++ ELG ++A + GA GLM AV G+++ +G+ +G
Sbjct: 13 GTDNEFELKAIELGKKLAHQNIELVYGGANVGLMGAVANGSLKNSGRVIGVLP------R 66
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ S + L + RK + N+ CD V+ALPGG GT++E+FE+L
Sbjct: 67 FLKSKEIAHNELTELILVNSMHERKTKM------NELCD--GVIALPGGFGTIEELFEML 118
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
QL P ++N + FY L+ FL D G + E+ + N + L
Sbjct: 119 TWGQL----GLHKKPIGILNINGFYDNLIAFLDDMVTKGLL--KEINRKMVLISDNIDEL 172
Query: 181 SYLAEFYDLSSIDK 194
+ Y +I K
Sbjct: 173 IIKMKAYQAPTIGK 186
>gi|163781758|ref|ZP_02176758.1| hypothetical protein HG1285_02708 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882978|gb|EDP76482.1| hypothetical protein HG1285_02708 [Hydrogenivirga sp. 128-5-R1-1]
Length = 252
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 25/179 (13%)
Query: 8 YLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFH 67
Y +F LG L +G GPG+M+A +GA +G G + H
Sbjct: 62 YETAFNLGK-----LGYAIITGGGPGIMEAANRGAHDSGTLSVGLNIE------IPREQH 110
Query: 68 PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLER 127
P L +F RK LI ++ A V PGG GT DE+FE L LIQ
Sbjct: 111 PNKYQNLSLKFDYFFVRKVMLIKYSL--------AYVIFPGGFGTFDELFEALTLIQ--- 159
Query: 128 IGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
G P ++ F+ LL ++ D +GT+ ++++ +L + D SE + + E
Sbjct: 160 TGKSYRFPLILFG-SEFWNPLLRYMEDKMVGFGTIDREDI-NLMSVADDPSEVVDIVYE 216
>gi|406836170|ref|ZP_11095764.1| hypothetical protein SpalD1_31164 [Schlesneria paludicola DSM
18645]
Length = 216
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 21/181 (11%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGP-GLMDAVTKGAM-QAGKPVGGFKVGKEAGEWT 62
HP Y ++ GE+ C+ G G G M AV GA+ + GK VG EW
Sbjct: 38 HPQYHEAAYRLGELLAENGCSIVYGGGAVGSMGAVADGALSKQGKVVGVIPEFMVKLEWE 97
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
L +E T RKH ++ AVVALPGG GTL+E+FE
Sbjct: 98 HPGVTELLRVEDMRT------RKHLMLS--------KSHAVVALPGGTGTLEELFEA--- 140
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
I L+R+G L P +++N FY L++ L D ++ A++W++ + E S
Sbjct: 141 ITLKRLGLYLH-PIVLLNTRGFYDPLIELL-DRAITERFLGEKHATMWQVVNEPEEVFSA 198
Query: 183 L 183
+
Sbjct: 199 I 199
>gi|415715468|ref|ZP_11465922.1| hypothetical protein CGSMWGv1400E_03598 [Gardnerella vaginalis
1400E]
gi|388058388|gb|EIK81183.1| hypothetical protein CGSMWGv1400E_03598 [Gardnerella vaginalis
1400E]
Length = 289
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 121 PDAPEYSSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQGL 179
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 180 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 221
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 222 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 251
>gi|415712923|ref|ZP_11465034.1| hypothetical protein CGSMWGv55152_05783 [Gardnerella vaginalis
55152]
gi|388056523|gb|EIK79387.1| hypothetical protein CGSMWGv55152_05783 [Gardnerella vaginalis
55152]
Length = 283
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVG-GFKVGKEAG- 59
PD P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 115 PDEPEYNSARIMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGISVGLGIELPHEQGL 173
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W + + R+F RK + + + ++ PGG GT+DE+FE
Sbjct: 174 NQW----------VNLGMQFRYFFVRKTMFLKYS--------SGIIVCPGGFGTMDELFE 215
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L L+Q ++ S++PV V+ ++K L++++
Sbjct: 216 SLTLVQTHKV-SKIPV---VLFGSEYWKGLMNWI 245
>gi|401410432|ref|XP_003884664.1| putative lysine decarboxylase domain-containing protein [Neospora
caninum Liverpool]
gi|325119082|emb|CBZ54634.1| putative lysine decarboxylase domain-containing protein [Neospora
caninum Liverpool]
Length = 395
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 28 SGAGPGLMDAVTKGA--MQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSAR 84
+G GPG+M+A GA + G+ +G G + EAG +P++ +F R
Sbjct: 204 TGGGPGMMEAGNCGAASVAGGRSMGMGISLPFEAG------LNPFVDDGLAFEFHYFFTR 257
Query: 85 KHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144
K ++ A+ V+ PGGVGTLDE+ E+L L Q ++ ++P+ V+ F
Sbjct: 258 KFWMVYTAL--------GVIVAPGGVGTLDELMEVLTLKQSGKMKRDIPI---VLFGKKF 306
Query: 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+K ++ F E +G VA+ + L+ D +EA YL +F
Sbjct: 307 WKDVVCFEKLVE-YGVVAEKDRDQLF-YTDDETEAFEYLKQF 346
>gi|378550217|ref|ZP_09825433.1| hypothetical protein CCH26_09021 [Citricoccus sp. CH26A]
Length = 297
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 29/186 (15%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAG- 59
P Y QS E+G +A T +G GPG+M+A +GA + G VG G ++ E G
Sbjct: 92 PGEADYEQSREVGRRLAEA-GFTVITGGGPGVMEAANRGAKEGGGHSVGLGIELPHEQGL 150
Query: 60 -EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+W ++ + R+F RK + + V PGG+GTLDE+FE
Sbjct: 151 NDW----------VDLGIDFRYFFVRKVMFVKFS--------QGFVVAPGGMGTLDELFE 192
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNS 177
L L+Q ++ + PV L Y + L+ ++ D G +A+D+V L ++ D+
Sbjct: 193 ALTLVQTGKV-TAFPVVLLDREY---WTPLVAWIRDTLVARGMIAEDDV-DLLRVADTPE 247
Query: 178 EALSYL 183
EA+ +
Sbjct: 248 EAVELV 253
>gi|320451388|ref|YP_004203484.1| hypothetical protein TSC_c23330 [Thermus scotoductus SA-01]
gi|320151557|gb|ADW22935.1| conserved hypothetical protein [Thermus scotoductus SA-01]
Length = 214
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
G HP Y + LG +A G G G+M+AV +GA +AG G VG
Sbjct: 48 FGEGHPAYTLGYRLGRALAEAGFGVVTGGGG-GVMEAVNRGAFEAG----GVSVGLNIEL 102
Query: 61 WTASNFHPYLPLETY-LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+PY +T+ LT R+F RK + A A V LPGG GTLDE+ E+
Sbjct: 103 PHEQKPNPY---QTHTLTLRYFFVRKVLFVRYA--------HAFVFLPGGFGTLDELSEV 151
Query: 120 LALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L LIQ E++ PF V D +++ LL ++ ++ G + ++A L + DS E
Sbjct: 152 LVLIQTEKVH-----PFPVFALDRGYWQGLLSWMESLKEQGAIDPKDLALLTPL-DSPEE 205
Query: 179 ALSYL 183
+ L
Sbjct: 206 VVQAL 210
>gi|423711975|ref|ZP_17686280.1| TIGR00730 family protein [Bartonella washoensis Sb944nv]
gi|395412823|gb|EJF79303.1| TIGR00730 family protein [Bartonella washoensis Sb944nv]
Length = 279
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
+G GPG+M+A +GA G P G V + +PY+ + RK H
Sbjct: 135 TGGGPGIMEAGNRGAADIGAPTIGLNVVLPHEQEP----NPYVTPHLCFNFHYLGMRKMH 190
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GTLDE+FE L L+Q R+ VP L+ + F+
Sbjct: 191 FLVRA---------KALAIFPGGFGTLDELFETLTLMQTGRMKK---VPILMFGKE-FWN 237
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++F GT+++ ++ L D+ +EA ++ FY L
Sbjct: 238 NVVNF-DYLSAQGTISRSDM-DLVTFVDTAAEAFEHIRVFYKL 278
>gi|161870780|ref|YP_001599953.1| hypothetical protein NMCC_1862 [Neisseria meningitidis 053442]
gi|161596333|gb|ABX73993.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 204
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A KGA AGK V VG +PY + L F+ RK
Sbjct: 59 SGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPHEQKPNPYQ--DIALRFSRFAERKAV 112
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A V +PGG GTLDE+FEIL L+Q G P P +++ +F+
Sbjct: 113 FFRYS--------QAYVVMPGGFGTLDELFEILTLVQ---TGKVPPRPIVLVG-KAFWSG 160
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L +++ + + ASL+ I D E + YL+E
Sbjct: 161 LAEWINAQLLARGLISEGAASLFAISDDEDEIVEYLSE 198
>gi|335425026|ref|ZP_08554017.1| hypothetical protein SSPSH_20026 [Salinisphaera shabanensis E1L3A]
gi|334886702|gb|EGM25049.1| hypothetical protein SSPSH_20026 [Salinisphaera shabanensis E1L3A]
Length = 246
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 19/159 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKH 86
+G GPG+M+A +GA + + G+ + E +N Y+ ++F RK
Sbjct: 92 TGGGPGIMEAANRGAADVNRELSMGYNI--ELPHEQGAN--AYISDALNFEFKYFFMRKF 147
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
++ A A++ PGG GT+DE+FE+L LIQ G + +P +V+ +F++
Sbjct: 148 WFMNVA--------KALIIFPGGFGTMDELFEMLTLIQ---TGKQPRIP-VVLYGKNFWE 195
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+L++F E G +A+ ++ ++ DS EA +L +
Sbjct: 196 RLINFDVFVE-MGLIAERDIDLFYR-ADSVDEAFDFLTD 232
>gi|313669246|ref|YP_004049530.1| hypothetical protein NLA_19800 [Neisseria lactamica 020-06]
gi|313006708|emb|CBN88178.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 210
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHADYTFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A + +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYIVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + ASL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPVVLVG-KAFWSGLAEWINAQLLARGLISEGAASLFAISDDEDEIVAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|397669916|ref|YP_006511451.1| hypothetical protein HMPREF9154_1175 [Propionibacterium propionicum
F0230a]
gi|395141977|gb|AFN46084.1| TIGR00730 family protein [Propionibacterium propionicum F0230a]
Length = 240
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 24/160 (15%)
Query: 28 SGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK 85
+G GPG+M+A KGA +AG VG G ++ E G +PY+ L + R+F ARK
Sbjct: 97 TGGGPGIMEAGNKGASEAGGTSVGLGIELPHEQG------LNPYVGLG--INFRYFFARK 148
Query: 86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145
+ + +A+PGG GTLDE+FE L LIQ ++ + PV V+ F+
Sbjct: 149 TMFLKYS--------RGFIAMPGGFGTLDELFESLTLIQTGKV-THFPV---VLFGSRFW 196
Query: 146 KKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184
LLD++ + E G ++ ++ L + D EA++ +
Sbjct: 197 GPLLDWIEREVEACGFISPGDLG-LITLTDDVGEAVAAMG 235
>gi|262203203|ref|YP_003274411.1| hypothetical protein Gbro_3314 [Gordonia bronchialis DSM 43247]
gi|262086550|gb|ACY22518.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247]
Length = 270
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEA 58
PD Y LG E+ R L + +G GPG M A +GA +AG G +
Sbjct: 93 APDSDEY----RLGVEVGRALGEAGYAVITGGGPGAMQAANEGARRAGAQSIGLNIELPF 148
Query: 59 GEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFE 118
+ + +P++ L + R+F RK + A A V LPGG+GTLDEMFE
Sbjct: 149 EQ----HLNPWVDL--GMNFRYFFVRKTMFVKYA--------QAFVCLPGGLGTLDEMFE 194
Query: 119 ILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178
L L+Q +++ + P +++ D + L+D++ + + E L I D +E
Sbjct: 195 ALTLVQTKKV---VRFPIVLVGRDH-WGPLVDWMREVLLTKRMISPEDLDLLSIVDDPAE 250
Query: 179 ALSYL 183
+ +
Sbjct: 251 VVEVI 255
>gi|94496036|ref|ZP_01302615.1| hypothetical protein SKA58_15677 [Sphingomonas sp. SKA58]
gi|94424728|gb|EAT09750.1| hypothetical protein SKA58_15677 [Sphingomonas sp. SKA58]
Length = 301
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G+ G + + P L + + +F+ RK H
Sbjct: 152 SGGGPSIMEAANRGAQDVGQTTIGMNIVLPHEQAPNRFVTPELSFQFH----YFALRKMH 207
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GT DEMFE+L LIQ G P+P L+ D F+
Sbjct: 208 FLLRA---------RALAVFPGGFGTFDEMFELLTLIQ---TGKMKPIPILLYGRD-FWN 254
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLS 190
+++DF D G ++ ++ L ++ E + FY+ S
Sbjct: 255 RVVDFEA-LADEGVISHKDL-DLLTWVENAQEGWDAVQRFYEDS 296
>gi|395782230|ref|ZP_10462634.1| TIGR00730 family protein [Bartonella rattimassiliensis 15908]
gi|395419169|gb|EJF85470.1| TIGR00730 family protein [Bartonella rattimassiliensis 15908]
Length = 285
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLE-TYLTCRFFSARKH 86
+G GPG+M+A +GA G P G + + S P+L YL R + H
Sbjct: 141 TGGGPGIMEAGNRGACDVGAPTIGLNIILPHEQEPNSYVSPHLCFNFHYLGMR----KMH 196
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GTLDE+FE L L+Q R+ VP L+ + F+
Sbjct: 197 FLLRA---------KALAIFPGGFGTLDELFETLTLVQTGRMQQ---VPILLFGRE-FWS 243
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
++F GT++ +V + K ++ +EA + FY L
Sbjct: 244 NTINF-EYLSAQGTISPTDV-NFMKFVNTAAEAFEEIRSFYKL 284
>gi|313681610|ref|YP_004059348.1| hypothetical protein Sulku_0481 [Sulfuricurvum kujiense DSM 16994]
gi|313154470|gb|ADR33148.1| Conserved hypothetical protein CHP00730 [Sulfuricurvum kujiense DSM
16994]
Length = 262
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP+Y Q+ L + +G GPG+M+A +GA + + V + E T
Sbjct: 60 NHPYYTQAMTLANMLGEK-GYNVITGGGPGIMEAANRGAYEV-ETVESIGLNIELA--TE 115
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ + +F +RK L+ ++ A V PGG GTLDEMFE L LI
Sbjct: 116 QQPNPYITKGQ--SFDYFFSRKVMLVKYSM--------AYVIFPGGFGTLDEMFEALTLI 165
Query: 124 QLERI-GSELPVPFLVMNYDSFYKKLLDFLGD 154
Q ++ G L F+V FY LL F+ D
Sbjct: 166 QTRKVWGVRL---FVVGT--EFYAPLLQFIED 192
>gi|78213067|ref|YP_381846.1| hypothetical protein Syncc9605_1542 [Synechococcus sp. CC9605]
gi|78197526|gb|ABB35291.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 304
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA + VG +G + +PY+ + +FS RK
Sbjct: 151 TGGGPGIMEAANRGAFE----VGCRSIGLNITLPFEQHPNPYITPDLCFKFNYFSLRKFH 206
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ ++ + PGG GTLDE+FE+L L Q+ GS +P+ V+ F+++
Sbjct: 207 FVMRSI--------GAILFPGGFGTLDELFELLTLRQVGTKGS-MPI---VLFGTEFWRR 254
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
L+DF + G ++ D++ L DS EA ++
Sbjct: 255 LVDF-DYLAETGLISDDDL-DLIHFSDSADEAWEFI 288
>gi|311064592|ref|YP_003971317.1| lysine decarboxylase family [Bifidobacterium bifidum PRL2010]
gi|310866911|gb|ADP36280.1| Lysine decarboxylase family [Bifidobacterium bifidum PRL2010]
Length = 313
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EW 61
P Y + +G IA+ +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 149 PDYKAARRMGRGIAKH-GVAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW 207
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ R+F RK + + + V+ PGG GT DEMFE+L
Sbjct: 208 ----------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTFDEMFELLT 249
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ S +P+ V+ +++ L ++L +D G ++ + SL I D EA+
Sbjct: 250 LVQTHKVMS-MPI---VLYGTEYWRGLFEWLTSTVQDHGMISPLD-PSLVLITDDPDEAV 304
>gi|297243346|ref|ZP_06927279.1| Rossmann fold nucleotide-binding protein [Gardnerella vaginalis
AMD]
gi|296888593|gb|EFH27332.1| Rossmann fold nucleotide-binding protein [Gardnerella vaginalis
AMD]
Length = 268
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 23/151 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
D P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 104 DDPEYSLARTMGSELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQG-- 160
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ L + R+F RK + + + ++ PGG GT+DEMFE L
Sbjct: 161 ----LNKWINLG--MQFRYFFVRKTMFMKYS--------SGIIVCPGGFGTMDEMFEALT 206
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++ VP ++ S++ L+D+L
Sbjct: 207 LVQTHKVAR---VPIILFG-TSYWNGLIDWL 233
>gi|291453963|ref|ZP_06593353.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291356912|gb|EFE83814.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 215
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
GP+ Y ELG + +G GPG M+A KGA +AG G +G E
Sbjct: 81 GPESFEYQTGVELGKALVEA-GFAVITGGGPGAMEAANKGAREAGGVSVG--LGIELPFE 137
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
N H ++ + R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 138 QGLNRH----VDIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELFEALT 185
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
L+Q ++ + P+ V+ ++ L+D+L D
Sbjct: 186 LVQTRKV-TRFPI---VLFGREYWSGLVDWLRDT 215
>gi|310287694|ref|YP_003938952.1| hypothetical protein BBIF_1173 [Bifidobacterium bifidum S17]
gi|313140476|ref|ZP_07802669.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|390937072|ref|YP_006394631.1| putative Rossmann fold nucleotide-binding protein [Bifidobacterium
bifidum BGN4]
gi|421734827|ref|ZP_16173879.1| putative Rossmann fold nucleotide-binding protein [Bifidobacterium
bifidum LMG 13195]
gi|309251630|gb|ADO53378.1| conserved hypothetical protein [Bifidobacterium bifidum S17]
gi|313132986|gb|EFR50603.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|389890685|gb|AFL04752.1| putative Rossmann fold nucleotide-binding protein [Bifidobacterium
bifidum BGN4]
gi|407077257|gb|EKE50111.1| putative Rossmann fold nucleotide-binding protein [Bifidobacterium
bifidum LMG 13195]
Length = 313
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGA-MQAGKPVG-GFKVGKEAG--EW 61
P Y + +G IA+ +G GPG+M+A +GA + GK VG G ++ E G +W
Sbjct: 149 PDYKAARRMGRGIAKH-GVAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQW 207
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ ++ R+F RK + + + V+ PGG GT DEMFE+L
Sbjct: 208 ----------VNLGMSFRYFFVRKTMFVKYS--------SGVIVCPGGFGTFDEMFELLT 249
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ S +P+ V+ +++ L ++L +D G ++ + SL I D EA+
Sbjct: 250 LVQTHKVMS-MPI---VLYGTEYWRGLFEWLTSTVQDHGMISPLD-PSLVLITDDPDEAV 304
>gi|220913265|ref|YP_002488574.1| hypothetical protein Achl_2520 [Arthrobacter chlorophenolicus A6]
gi|219860143|gb|ACL40485.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6]
Length = 260
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 31/180 (17%)
Query: 12 FELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAG--EWTAS 64
+E+G E+ R L +G GPG M+A +G ++ G VG G ++ E G +W
Sbjct: 88 YEMGVEVGRKLAEAGVAVITGGGPGSMEAANRGTVEGNGVSVGLGIELPFEQGLNQW--- 144
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
++ + R+F ARK + A + LPGG+GTLDE+FE + L+Q
Sbjct: 145 -------VDLGINFRYFFARKTMFVKYA--------QGFIVLPGGLGTLDELFEAMVLVQ 189
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++ S P +++ + F+ ++D++ G G V++ ++ L ++ DS +EA+ +
Sbjct: 190 TRKVTS---FPIVLLGVE-FWGPMIDWIRGTLVAEGMVSEKDL-DLIQVVDSPAEAVERV 244
>gi|379710671|ref|YP_005265876.1| hypothetical protein NOCYR_4486 [Nocardia cyriacigeorgica GUH-2]
gi|374848170|emb|CCF65242.1| conserved protein of unknown function [Nocardia cyriacigeorgica
GUH-2]
Length = 245
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 19/152 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
DHP Y + +G +A +G GPG M+A +GA +AG G+ +G
Sbjct: 66 DHPEYEAARAIGSALAHA-GFAVITGGGPGAMEAANRGACEAG----GYSIGLGIELPFE 120
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ ++ L + R+F RK + + A V LPGG GT+DE+FE L L+
Sbjct: 121 QGLNEWVDLG--INFRYFFVRKTMFVKYS--------QAFVCLPGGFGTMDELFEALTLV 170
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
Q +I + P+ ++ F+ L+D++ D
Sbjct: 171 QTRKI-TRFPI---ILFGTRFWGGLVDWIRDS 198
>gi|347526506|ref|YP_004833253.1| hypothetical protein SLG_01210 [Sphingobium sp. SYK-6]
gi|345135187|dbj|BAK64796.1| hypothetical protein SLG_01210 [Sphingobium sp. SYK-6]
Length = 293
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GP +M+A +GA G G + + N +PY+ + +F+ RK
Sbjct: 143 SGGGPSIMEAANRGAADVGAQTIGLNIVLPHEQ----NPNPYVTPDLSFQFHYFALRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A+ PGG GT DE FE+L L+Q G P+P L+ + F+ +
Sbjct: 199 F--------TLRARALAVFPGGFGTFDEFFELLTLVQ---TGKMKPIPILLFGRE-FWTR 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
+++F E+ G ++ ++ L ++ EA + EFY S D
Sbjct: 247 VVNFDALAEE-GVISPHDL-DLINWVETAEEAWRVVDEFYGESGAD 290
>gi|377568132|ref|ZP_09797328.1| hypothetical protein GOTRE_018_00200 [Gordonia terrae NBRC 100016]
gi|377534619|dbj|GAB42493.1| hypothetical protein GOTRE_018_00200 [Gordonia terrae NBRC 100016]
Length = 259
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ P+ P Y LG + R L + +G GPG M+A +GA QA G +
Sbjct: 91 LAPESPEY----ALGVRVGRALGEAGYAVITGGGPGAMEAANQGARQAAAQSIGLNIELP 146
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
+ +P++ L + R+F RK + A A V LPGG+GTLDE+F
Sbjct: 147 FEQ----GLNPWVDLG--MNFRYFFVRKTMFVKYA--------QAFVCLPGGMGTLDELF 192
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
E L L+Q +++ + P +++ D F+ LL ++ D
Sbjct: 193 EALTLVQTKKV---VRFPIVLVGSD-FWGGLLAWMRDV 226
>gi|32470511|ref|NP_863501.1| hypothetical protein [Mycobacterium avium]
gi|16555328|gb|AAL23622.1| hypothetical protein [Mycobacterium avium]
Length = 257
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 3 PDHPHYLQSFELGGEIARL-LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
PDHP+Y + L + L D T G G G+M+A +GA +AG G + + E
Sbjct: 80 PDHPYYQLARTLAARLGALGFDIIT--GGGAGIMEAANRGAREAGVRSIGLVI-ELPYEQ 136
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
++F ++ L ++F RK L+ A +A V PGG GTLDE+FE L
Sbjct: 137 RMNSF-----VDLSLEFKYFFVRKLMLVRYA--------SAFVVFPGGFGTLDELFEALT 183
Query: 122 LIQLERI 128
LIQ ++I
Sbjct: 184 LIQTQKI 190
>gi|345009124|ref|YP_004811478.1| hypothetical protein [Streptomyces violaceusniger Tu 4113]
gi|344035473|gb|AEM81198.1| Conserved hypothetical protein CHP00730 [Streptomyces
violaceusniger Tu 4113]
Length = 249
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 6 PHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P +E G I R L + +G GPG M+A +GA +AG G VG
Sbjct: 81 PEGSPEYEAGVRIGRALVEAGFGVITGGGPGAMEAANRGATEAG----GVSVGLGIELPF 136
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY+ + + R+F RK + A V LPGG+GTLDE FE L L
Sbjct: 137 EQGLNPYV--DIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDECFEALTL 186
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
+Q +++ + P+ V+ +++K L+D+L
Sbjct: 187 VQTKKV-TRFPI---VLFGSAYWKGLVDWL 212
>gi|78186245|ref|YP_374288.1| hypothetical protein Plut_0357 [Chlorobium luteolum DSM 273]
gi|78166147|gb|ABB23245.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 245
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 7 HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNF 66
Y Q+ +G +A +G GPG+M+A +GA +AG GF + K + T ++
Sbjct: 73 EYRQARRMGSLLAEE-GLAVVTGGGPGVMEAANRGAQEAGGSSIGFNI-KLPNQQTPNS- 129
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
Y+ + ++F RK + + A VALPGG GTLDE+ E + LIQ
Sbjct: 130 --YIDPGRLVGFQYFFVRKVMFLKYS--------QAFVALPGGFGTLDEVSEAITLIQTG 179
Query: 127 RIGSELPVPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
+ + PV + +Y D Y+ + D + D G ++ ++ ++ + D+ E L +
Sbjct: 180 K-SARFPVILVGKSYWDGLYRWICDTM--LRDHGFISPPDLGFIY-LVDTPEEVLPIIRT 235
Query: 186 FY 187
FY
Sbjct: 236 FY 237
>gi|395791608|ref|ZP_10471064.1| TIGR00730 family protein [Bartonella alsatica IBS 382]
gi|395407911|gb|EJF74531.1| TIGR00730 family protein [Bartonella alsatica IBS 382]
Length = 287
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G V + +PY+ + RK
Sbjct: 143 TGGGPGIMEAGNRGAADIGAPTIGLNVVLPHEQEP----NPYVTPHLCFNFHYLGVRKMH 198
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE+FE L L+Q R+ VP L+ + F+
Sbjct: 199 FLMRA--------KALAIFPGGFGTLDELFETLTLMQTGRMKK---VPVLMFGKE-FWNN 246
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+++F GT++ +V L D+ +EA + FY L
Sbjct: 247 VVNF-DYLSAQGTISPSDV-DLVTFVDTAAEAFEQIRSFYKL 286
>gi|336321639|ref|YP_004601607.1| Conserved hypothetical protein CHP00730 [[Cellvibrio] gilvus ATCC
13127]
gi|336105220|gb|AEI13039.1| Conserved hypothetical protein CHP00730 [[Cellvibrio] gilvus ATCC
13127]
Length = 277
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
Query: 19 ARLLDC--TTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYL 76
ARL++ +G GPG+M+A KGA QAG G VG + ++ L +
Sbjct: 95 ARLVEAGYAVITGGGPGIMEAANKGAKQAG----GVSVGLGIELPFEQGMNDFVDLG--V 148
Query: 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPF 136
R+F ARK + + V LPGG GTLDE+FE L L+Q ++ + P+
Sbjct: 149 NFRYFFARKTMFVKYS--------EGFVVLPGGFGTLDELFEALTLVQTHKV-IQFPI-- 197
Query: 137 LVMNYDSFYKKLLDFLG 153
V+ ++++ LLD++G
Sbjct: 198 -VLVGRAYWQGLLDWIG 213
>gi|260062819|ref|YP_003195899.1| hypothetical protein RB2501_14554 [Robiginitalea biformata
HTCC2501]
gi|88784387|gb|EAR15557.1| hypothetical protein RB2501_14554 [Robiginitalea biformata
HTCC2501]
Length = 228
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 19/186 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
PDHP+Y ++ + +++ +G GPG+M+A +GA +AG G VG
Sbjct: 52 PDHPYYQEAVDTARKLSEAGYGII-TGGGPGIMEAGNRGANEAG----GTSVGLNIDLPF 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY+ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 107 EQHDNPYIDPDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAMTL 158
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALS 181
IQ E+IG P+ V+ F+ LLD++ G + G ++ ++ L ++ D+ E +
Sbjct: 159 IQTEKIG-RFPI---VLFGTKFWGGLLDWIKGTMLEAGNISPTDL-DLIQLVDTPEEVVE 213
Query: 182 YLAEFY 187
+ FY
Sbjct: 214 IIDGFY 219
>gi|56698166|ref|YP_168538.1| decarboxylase [Ruegeria pomeroyi DSS-3]
gi|56679903|gb|AAV96569.1| decarboxylase family protein [Ruegeria pomeroyi DSS-3]
Length = 291
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA AG G + + A N ++ E +F+ RK
Sbjct: 139 TGGGPGVMEAGNRGAKDAGGCSIGLNIVLPHEQ--APNL--FVTPELSFNFHYFAIRKMH 194
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A A+ PGG GTLDE+FE L LIQ R+ VPFL+ + F+++
Sbjct: 195 FLMRA--------RAITIFPGGFGTLDELFESLTLIQTGRMER---VPFLLFGRE-FWER 242
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++++ D GT++ +++ L++ D+ EA+ +
Sbjct: 243 VINWRA-LADAGTISAEDL-DLFRFVDTAQEAVEII 276
>gi|121999200|ref|YP_001003987.1| hypothetical protein Hhal_2422 [Halorhodospira halophila SL1]
gi|121590605|gb|ABM63185.1| conserved hypothetical protein 730 [Halorhodospira halophila SL1]
Length = 241
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 1 MGPDHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKE 57
+ PDHP+Y +L ++AR + + SG G G+M+A KGA P G + +
Sbjct: 56 VAPDHPYY----QLAEQVAREVSDAGFSVVSGGGGGIMEAANKGAQAGKSPSVGLNI-QL 110
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
E A+ + + L R F +RK + A +A V LPGG GTLDE+
Sbjct: 111 PKEQEANPYQ-----DIALHFRHFFSRKVMFVKYA--------SAYVVLPGGFGTLDELA 157
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177
EIL L+Q G +P +++ + F++KL+++ + + L+K+ D+
Sbjct: 158 EILTLVQ---TGKTPKIP-IILVHSPFWEKLVEWFQERLVAEAAIDADDMHLFKVVDTPE 213
Query: 178 EALSYLAEFYD 188
E ++ + + Y+
Sbjct: 214 EVVAAIFDHYE 224
>gi|171463346|ref|YP_001797459.1| hypothetical protein Pnec_0590 [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192884|gb|ACB43845.1| conserved hypothetical protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 175
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 23/134 (17%)
Query: 20 RLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCR 79
+L CT G GP +M+A +GA +AG GF + + HP + L+ R
Sbjct: 36 KLHICT---GGGPEIMEAANRGAFEAGDKTIGFNISLPREQ------HPNEYITPGLSFR 86
Query: 80 F--FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFL 137
F F+ RK + A A+VA GG G+ DE+FE+L LIQ +++ +P+P +
Sbjct: 87 FHYFALRKMHFMLRA--------RAIVAYSGGFGSFDELFEVLTLIQTKKV---VPIPVI 135
Query: 138 VMNYDSFYKKLLDF 151
++ +++ ++++F
Sbjct: 136 LVG-KAYWNEMVNF 148
>gi|139439031|ref|ZP_01772483.1| Hypothetical protein COLAER_01489 [Collinsella aerofaciens ATCC
25986]
gi|133775378|gb|EBA39198.1| TIGR00730 family protein [Collinsella aerofaciens ATCC 25986]
Length = 252
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 25/178 (14%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTA 63
P Y + +G +IA+ +G GPG+M+A +GA GK VG G ++ E G
Sbjct: 89 PLYKAARTVGRKIAQR-GVAVITGGGPGIMEAANRGAASVNGKSVGLGIELPHEQG---- 143
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ Y+ L + R+F RK + + + + PGG GTLDEMFE+L L+
Sbjct: 144 --LNKYVNLG--MNFRYFFVRKTMFVKYS--------SGAIVFPGGFGTLDEMFEVLTLV 191
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEAL 180
Q ++ +P LV+ +++ L D+L G G ++ + L I D +EA+
Sbjct: 192 QTHKV-KRMP---LVLVGSEYWQGLFDWLNGPVMSAGMISPLD-PDLVHITDDLNEAV 244
>gi|189500968|ref|YP_001960438.1| hypothetical protein Cphamn1_2047 [Chlorobium phaeobacteroides BS1]
gi|189496409|gb|ACE04957.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
Length = 245
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 24/186 (12%)
Query: 6 PHYLQSFELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P Y+ L + RLL +S G GPG M+A KGA +AG GF + E
Sbjct: 72 PDYI----LAERMGRLLAEEGFSVITGGGPGAMEAANKGAQEAGGVSIGFNI--ELPNQQ 125
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ N Y+ + LT ++F RK + + A + LPGG GT+DE FE +
Sbjct: 126 SPNL--YIDRDRILTFQYFFVRKVMFLKYS--------QAFIVLPGGFGTMDEFFEAATI 175
Query: 123 IQLERIGSELPVPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
IQ + S PV + +Y + FY + + + C++ ++ E+ L+ + D +
Sbjct: 176 IQTGK-SSRFPVILMGSDYWEGFYTWMQEKM--CKEKKYISNKELDILF-MEDDPDRVIG 231
Query: 182 YLAEFY 187
+ FY
Sbjct: 232 IIKSFY 237
>gi|51245545|ref|YP_065429.1| hypothetical protein DP1693 [Desulfotalea psychrophila LSv54]
gi|50876582|emb|CAG36422.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 212
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P HY + L ++A +G GPG+M+A KGA +AG G V + +
Sbjct: 44 PADKHYKDAVILAEKVADA-GWAVITGGGPGIMEAANKGAYEAGGLSAGLNVDLPHEQES 102
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PYL L ++F RK L+ + + +PGG G++DE+FE L L
Sbjct: 103 ----NPYL--NYALHFKYFFVRKVMLVKYS--------RGFICMPGGFGSMDELFEALTL 148
Query: 123 IQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCE-DWGTVAKDEVASLWKICDSNSEAL 180
+Q RI PF ++ Y S F+ L++++ D G + ++ + + + D E +
Sbjct: 149 VQTNRI-----APFPIVLYGSAFWGGLVEWMRDAMLSHGNIDAADLDA-FVVLDDPDEVI 202
Query: 181 SYLAE 185
+YL +
Sbjct: 203 TYLKK 207
>gi|379058253|ref|ZP_09848779.1| hypothetical protein SproM1_09278 [Serinicoccus profundi MCCC
1A05965]
Length = 251
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 41/160 (25%)
Query: 4 DHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP+Y LG + R L +G GPG M+A KGA AG
Sbjct: 76 DHPYY----ALGERVGRALVEAGYAVITGGGPGAMEAANKGASAAGG------------- 118
Query: 61 WTASNFHPYLPLETYLT--------CRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGT 112
T+ LP ET L R+F RK + + V LPGGVGT
Sbjct: 119 -TSVGLGIELPFETGLNDFVDLGVNFRYFFVRKTMFVKYS--------EGFVVLPGGVGT 169
Query: 113 LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
LDE+FE + LIQ ++ + P +++ D ++ LLD+L
Sbjct: 170 LDELFEAVTLIQTGKVTN---FPIVLVGRD-YWAPLLDWL 205
>gi|110596923|ref|ZP_01385213.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
gi|110341610|gb|EAT60070.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
Length = 245
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
P YL + +LG +A +G GPG+M+A +GA AG G +G N
Sbjct: 72 PEYLLAEKLGTLLA-AEGFAVITGGGPGVMEAANRGAQSAG----GVSIGFNIKLPNQQN 126
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
+ Y+ + ++ ++F RK + A A +ALPGG GTLDE+ E + LIQ
Sbjct: 127 PNRYIDQDKLVSFQYFFVRKVMFLKYA--------QAFIALPGGFGTLDEVSEAITLIQT 178
Query: 126 ERIGSELPVPFLVMNY-DSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184
+ PV + +Y D FY+ + + + ++ G ++++++ ++ + +S + +
Sbjct: 179 GK-SERFPVILMGKSYWDGFYRWIKETM--LQEKGYISEEDLGFIY-LEESPEAVVEIIK 234
Query: 185 EFY 187
FY
Sbjct: 235 GFY 237
>gi|407802174|ref|ZP_11149016.1| hypothetical protein S7S_01249 [Alcanivorax sp. W11-5]
gi|407023849|gb|EKE35594.1| hypothetical protein S7S_01249 [Alcanivorax sp. W11-5]
Length = 211
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 1 MGPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+G +Y ++ EL + + +G GPG+M+ +GA G G + E
Sbjct: 29 LGEQSDYYKKAEELAAKFSEA-GLNVLTGGGPGIMEGANRGAHGKGACSIGLNISLPF-E 86
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+A+ + + + R+F RK + AV V PGG GT+DE+FE L
Sbjct: 87 ESANRYQ-----DLSINFRYFFVRKLMFVKHAV--------GFVVFPGGFGTMDELFEAL 133
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD-CEDWGTVAKDEVASLWKICDSNSEA 179
L+Q +I S P+ V+ +S++ L+D+LG + G + ++ L ++ DS +A
Sbjct: 134 TLVQTGKIAS-FPI---VLFGESYWSGLVDWLGQRMLEEGCIGPADM-KLIQVTDSVDQA 188
Query: 180 LSYLAEFYDLSSIDKR 195
+ Y D+R
Sbjct: 189 FRTVVRSYRKQPDDRR 204
>gi|31789442|gb|AAP58556.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 254
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 27/186 (14%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
D P+Y ++ E +++ +G GPG+M+A +GA++AG G +G
Sbjct: 69 DDPYYKEAQETAALLSQA-GFAVITGGGPGIMEAANRGALEAG----GQSIGCNIELPFE 123
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+ YL L L ++F RK + ++ + PGG GTLDE+FE L LI
Sbjct: 124 QKSNDYLTLG--LKFKYFFVRKMMFVKYSL--------GFIIFPGGFGTLDELFEALTLI 173
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW----GTVAKDEVASLWKICDSNSEA 179
Q +I PV V+ ++K +LD++ DW G V + ++ L + DS +E
Sbjct: 174 QTGKI-RNFPV---VLYGSDYWKGMLDWI---RDWAMKEGKVTEADL-KLLHLTDSPAEV 225
Query: 180 LSYLAE 185
+ +++
Sbjct: 226 VKIISD 231
>gi|415729483|ref|ZP_11472509.1| hypothetical protein CGSMWGv6119V5_05281 [Gardnerella vaginalis
6119V5]
gi|388064517|gb|EIK87051.1| hypothetical protein CGSMWGv6119V5_05281 [Gardnerella vaginalis
6119V5]
Length = 267
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 23/150 (15%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEWT 62
P Y+ + +G E+ + +G GPG+M+A +GA +AG VG G ++ E G
Sbjct: 104 EPEYVDALTMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPHEQG--- 159
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ ++ L + R+F RK + + + ++ PGG GT+DEMFE L L
Sbjct: 160 ---LNKWINLG--MQFRYFFVRKTMFMKYS--------SGIIVCPGGFGTMDEMFEALTL 206
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
+Q ++ + +PV V+ ++K L+++L
Sbjct: 207 VQTHKV-ARVPV---VLFGTEYWKGLINWL 232
>gi|415727022|ref|ZP_11471250.1| hypothetical protein CGSMWGv00703Dmash_04794 [Gardnerella vaginalis
00703Dmash]
gi|388062751|gb|EIK85356.1| hypothetical protein CGSMWGv00703Dmash_04794 [Gardnerella vaginalis
00703Dmash]
Length = 267
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 23/150 (15%)
Query: 5 HPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEWT 62
P Y + +G E+ + +G GPG+M+A +GA +AG VG G ++ +E G
Sbjct: 104 EPEYEAALTMGKELVKR-GFAVITGGGPGIMEAANRGAAEAGGTSVGLGIELPREQG--- 159
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ ++ L + R+F RK + + + ++ PGG GT+DEMFE L L
Sbjct: 160 ---LNKWINLG--MQFRYFFVRKTMFMKYS--------SGIIVCPGGFGTMDEMFEALTL 206
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
+Q ++ + +PV V+ ++K L+++L
Sbjct: 207 VQTHKV-ARVPV---VLFGTEYWKGLINWL 232
>gi|254527155|ref|ZP_05139207.1| decarboxylase family protein [Prochlorococcus marinus str. MIT
9202]
gi|221538579|gb|EEE41032.1| decarboxylase family protein [Prochlorococcus marinus str. MIT
9202]
Length = 298
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 31/189 (16%)
Query: 7 HYLQSFELGGEIARL--LDCTTWS--------GAGPGLMDAVTKGAMQAGKPVGGFKVGK 56
HY S E+++L LD T S G GPG+M+A +GA AG G +
Sbjct: 126 HYYSS---ARELSKLISLDSKTKSPNSHVIVTGGGPGIMEAANRGAFDAGCKSIGLNISL 182
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
+ S P L + +F+ RK + T+ V PGG GTLDE+
Sbjct: 183 PNEQHPNSFITPGLCFK----FNYFAMRKFHFV--------MRSTSAVFFPGGFGTLDEL 230
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
FE+L L Q G +P ++ S+++K+++F D G + ++++ S+++ D+
Sbjct: 231 FELLTLRQTNMKGK---IPIILFG-KSYWEKVINF-QFLSDMGLIGENDL-SIFQYADTA 284
Query: 177 SEALSYLAE 185
+EA + + +
Sbjct: 285 NEAWNLIKQ 293
>gi|390562701|ref|ZP_10244880.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390172726|emb|CCF84192.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 312
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 6 PHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASN 65
P Y + ++G +A+ T +G GPG+M+A +GA++A GG VG
Sbjct: 94 PMYAAAQKVGQLLAKA-GFATITGGGPGIMEAANRGAIEA----GGISVGVNIELPAEQG 148
Query: 66 FHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQL 125
+ Y + L R+F RK + A + PGG GTLDE+F L L+Q
Sbjct: 149 INKY--VNVPLNFRYFFVRKTMFVKYA--------EGFIIFPGGFGTLDELFGALTLMQT 198
Query: 126 ERIGSELPVPFLVMNYDSFYKKLLDFL 152
++ + P+ V+ +F++KLLD+L
Sbjct: 199 GKL-ANFPI---VLFGSAFWEKLLDWL 221
>gi|256825751|ref|YP_003149711.1| hypothetical protein Ksed_19460 [Kytococcus sedentarius DSM 20547]
gi|256689144|gb|ACV06946.1| conserved hypothetical protein, DprA/Smf-related, family 2
[Kytococcus sedentarius DSM 20547]
Length = 288
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 23/151 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
D P Y E+G ++ +G GPG M+A +GA +AG +G G ++ EAG
Sbjct: 114 DSPAYAYGLEVGRQLVEA-GYAVITGGGPGTMEAANRGAQEAGGDSIGLGIELPFEAG-- 170
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
++F ++ + R+F RK + A + + LPGG GTLDE+FE L
Sbjct: 171 -LNDF-----VDLGVNFRYFFVRKTMFVKYA--------SGFIVLPGGFGTLDELFEALT 216
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L+Q ++ + P+ V+ F++ LLD+L
Sbjct: 217 LVQTGKV-THFPI---VLIGTDFWQPLLDWL 243
>gi|372209711|ref|ZP_09497513.1| hypothetical protein FbacS_06331 [Flavobacteriaceae bacterium S85]
Length = 242
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 19/156 (12%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A KGA + G VG N +P++ + + +F RK + +
Sbjct: 96 MEAGNKGANKGH----GTSVGLNIDLPFEQNNNPWIDRDKNINFDYFFVRKVMFVKYS-- 149
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
V +PGG GTLDE+FE + LIQ ++IG P+ V+ ++ LLD++ +
Sbjct: 150 ------QGFVVMPGGFGTLDELFEAITLIQTKKIG-RFPI---VLVGKRYWSGLLDWIKE 199
Query: 155 --CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++ T++ +++ +L+++ DS EA+ +L FY+
Sbjct: 200 RLLDEYKTISPEDL-NLFRLVDSADEAVEHLNNFYN 234
>gi|85704745|ref|ZP_01035846.1| decarboxylase family protein [Roseovarius sp. 217]
gi|85670563|gb|EAQ25423.1| decarboxylase family protein [Roseovarius sp. 217]
Length = 271
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 34/169 (20%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV----GKEAGEWTAS----NFHPYLPLET 74
D +G GPG+M+A +GA AG G + + E+ NFH
Sbjct: 123 DYVIATGGGPGVMEAGNRGAADAGGASIGLNIVLPHEQAPNEYVTPGLCFNFH------- 175
Query: 75 YLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPV 134
+F+ RK + A A+ PGG GTLDEMFE L LIQ +R+ V
Sbjct: 176 -----YFAIRKMHFLMRA--------RAICVFPGGFGTLDEMFEALTLIQTDRMKR---V 219
Query: 135 PFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
PFL+ +F++ ++++ E GT++ +++ L++ ++ EA+ +
Sbjct: 220 PFLLFGA-AFWQTIINWAALSE-AGTISAEDL-ELFQFVETADEAMQII 265
>gi|168702603|ref|ZP_02734880.1| hypothetical protein GobsU_23947 [Gemmata obscuriglobus UQM 2246]
Length = 270
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 20/178 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
H +Y + + G +A T +G GPG+M+A +GA K V G +G
Sbjct: 77 QHRYYQMARQAGRYLAES-GFTVMTGGGPGIMEAANRGA----KDVQGRSIGCNIVLPHE 131
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
+PY+ ++++ +F RK L+ + A + LPGG GTLDE+FE+ LI
Sbjct: 132 QKPNPYV--DSWIDFEYFFVRKLMLVKYSY--------AFIVLPGGFGTLDELFEVATLI 181
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
Q ++ + PV + ++Y +K L+D L + T+ +++ L + D E +S
Sbjct: 182 QTGKL-EQFPVALMGVDY---WKPLVDQLRLMVNEKTINSEDLDQL-IVSDDPGEVVS 234
>gi|23005092|ref|ZP_00048089.1| COG1611: Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magnetotacticum MS-1]
Length = 207
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 3 PDHPHYLQSFELGGEIARLL---DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
PDH Y L ++ RLL +G GPG+M+A KGA +AG G +G
Sbjct: 93 PDHADY----ALAEDVGRLLVDEGFAVITGGGPGIMEAANKGASEAG----GLSIGLGIE 144
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ Y+ L + R+F ARK + A V LPGG GT DE+FE
Sbjct: 145 LPFEQGMNRYVNLG--VNFRYFFARKTMFVKYA--------QGFVVLPGGFGTFDELFEA 194
Query: 120 LALIQLERI 128
L L+Q +I
Sbjct: 195 LTLVQTHKI 203
>gi|372220939|ref|ZP_09499360.1| hypothetical protein MzeaS_01405 [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 228
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P P Y + + +IA +G GPG+M+A KGA AG G VG
Sbjct: 52 PGAPFYELAVDTAKKIAEA-GYGVITGGGPGIMEAGNKGANLAG----GTSVGLNIDLPF 106
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +P++ + L +F RK + + V +PGG GTLDE+FE + L
Sbjct: 107 EQHDNPFIDPDKSLDFDYFFVRKVMFVKYS--------QGFVVMPGGFGTLDELFEAMTL 158
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
IQ +I P +++ D F+ L+D++ + + L K+ D+ E +
Sbjct: 159 IQTNKIHK---FPIILVGTD-FWSGLVDWIKNTMLTVKNISPQDLDLIKVVDTADEVVEI 214
Query: 183 LAEFY 187
+ FY
Sbjct: 215 IDAFY 219
>gi|291615289|ref|YP_003525446.1| hypothetical protein Slit_2834 [Sideroxydans lithotrophicus ES-1]
gi|291585401|gb|ADE13059.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1]
Length = 238
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 4 DHPHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
DHP+Y +L EIARLL + SG GPG+M+A KGA G + +
Sbjct: 56 DHPYY----KLTEEIARLLSDAGFSVISGGGPGIMEAANKGAFYGKSSSVGLNIQLPHEQ 111
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + T F RK + A +A V +PGG GT+DE+ E L
Sbjct: 112 HN----NPYQNISQ--TFHHFFTRKVMFVKFA--------SAYVVMPGGFGTMDELMEAL 157
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G +P +++ F+ +++ F + +A ++ L K+ D +
Sbjct: 158 TLVQ---TGKTRKMPIILVG-SKFWGGMVEWFKTSLLEEQMIAPGDM-ELIKVIDEPEQV 212
Query: 180 LSYLAEFYDLSSIDKRVHEVNLK 202
++ + + Y+ + + E+ ++
Sbjct: 213 VAAIFKHYETRGFEPSIAELEMQ 235
>gi|410995329|gb|AFV96794.1| hypothetical protein B649_02400 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 261
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 18/151 (11%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+HP+Y Q+ L G +A +G GPG+M+A +GA + V + E
Sbjct: 60 NHPYYQQAMSLSGMLAER-GYNIITGGGPGIMEAANRGAYDF-EDVESIGLNIELPAEQQ 117
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
N PY+ + +F +RK L+ ++ A V PGG GTLDEMFE L LI
Sbjct: 118 PN--PYITKGR--SFDYFFSRKVMLVKYSM--------AYVIFPGGFGTLDEMFEALTLI 165
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
Q ++ V V+ + FY L+ F+ D
Sbjct: 166 QTRKVWG---VRLFVIGTE-FYAPLMQFIQD 192
>gi|421562504|ref|ZP_16008331.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM2795]
gi|402343160|gb|EJU78315.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM2795]
Length = 210
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
SG GPG+M+A KGA AGK V VG +PY + L F+ RK
Sbjct: 65 SGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPHEQKPNPYQ--DIALRFSRFAERKAV 118
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A V +PGG GTLDE+FEIL L+Q G P P +++ +F+
Sbjct: 119 FFRYS--------QAYVVMPGGFGTLDELFEILTLVQ---TGKVPPRPIVLVG-KAFWSG 166
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L +++ + + SL+ I D E ++YL+E
Sbjct: 167 LAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSE 204
>gi|302542736|ref|ZP_07295078.1| putative Lysine decarboxylase [Streptomyces hygroscopicus ATCC
53653]
gi|302460354|gb|EFL23447.1| putative Lysine decarboxylase [Streptomyces himastatinicus ATCC
53653]
Length = 249
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P +E G +I R L + +G GPG M+A +GA +AG G VG
Sbjct: 82 PEGSPEYEAGVKIGRALAEAGFGVITGGGPGAMEAANRGASEAG----GVSVGLGIELPY 137
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY+ + + R+F RK + A V LPGG+GTLDE FE L L
Sbjct: 138 EQGLNPYVDIG--VNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDECFEALTL 187
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q +++ + P+ V+ S++ L+D+L + A + L+ + D E +
Sbjct: 188 VQTKKV-TRFPI---VLFGSSYWGGLVDWLENTLIAQGKASQQDLELFHLTDDIDEVVDL 243
Query: 183 LAE 185
+ +
Sbjct: 244 VTK 246
>gi|15676207|ref|NP_273339.1| hypothetical protein NMB0283 [Neisseria meningitidis MC58]
gi|121634162|ref|YP_974407.1| hypothetical protein NMC0289 [Neisseria meningitidis FAM18]
gi|254805675|ref|YP_003083896.1| putative nucl protein [Neisseria meningitidis alpha14]
gi|304389113|ref|ZP_07371155.1| methionyl-tRNA formyltransferase [Neisseria meningitidis ATCC
13091]
gi|385323427|ref|YP_005877866.1| hypothetical protein NMV_0309 [Neisseria meningitidis 8013]
gi|385338819|ref|YP_005892692.1| hypothetical protein NMAA_1697 [Neisseria meningitidis WUE 2594]
gi|385339324|ref|YP_005893196.1| hypothetical protein NMBG2136_0284 [Neisseria meningitidis G2136]
gi|385342683|ref|YP_005896554.1| hypothetical protein NMBM01240149_1803 [Neisseria meningitidis
M01-240149]
gi|385850545|ref|YP_005897060.1| hypothetical protein NMBM04240196_0290 [Neisseria meningitidis
M04-240196]
gi|385852483|ref|YP_005898997.1| hypothetical protein NMBH4476_0278 [Neisseria meningitidis H44/76]
gi|385856423|ref|YP_005902935.1| hypothetical protein NMBNZ0533_0285 [Neisseria meningitidis
NZ-05/33]
gi|416159370|ref|ZP_11605833.1| hypothetical protein TIGR00730 [Neisseria meningitidis N1568]
gi|416179710|ref|ZP_11611146.1| hypothetical protein TIGR00730 [Neisseria meningitidis M6190]
gi|416190115|ref|ZP_11615595.1| hypothetical protein TIGR00730 [Neisseria meningitidis ES14902]
gi|416194995|ref|ZP_11617576.1| hypothetical protein TIGR00730 [Neisseria meningitidis CU385]
gi|416211861|ref|ZP_11621563.1| hypothetical protein TIGR00730 [Neisseria meningitidis M01-240013]
gi|421539481|ref|ZP_15985642.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 93004]
gi|421541626|ref|ZP_15987743.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM255]
gi|421543684|ref|ZP_15989775.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM140]
gi|421545745|ref|ZP_15991805.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM183]
gi|421547812|ref|ZP_15993844.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM2781]
gi|421552024|ref|ZP_15998005.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM576]
gi|421554030|ref|ZP_15999981.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 98008]
gi|421556278|ref|ZP_16002195.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 80179]
gi|421560444|ref|ZP_16006303.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM2657]
gi|421564496|ref|ZP_16010295.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM3081]
gi|421566713|ref|ZP_16012455.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM3001]
gi|427827019|ref|ZP_18994064.1| possible lysine decarboxylase family protein [Neisseria
meningitidis H44/76]
gi|433466397|ref|ZP_20423860.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 87255]
gi|433468518|ref|ZP_20425955.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 98080]
gi|433472663|ref|ZP_20430033.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 97021]
gi|433481087|ref|ZP_20438359.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2006087]
gi|433483209|ref|ZP_20440447.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2002038]
gi|433485310|ref|ZP_20442516.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 97014]
gi|433491790|ref|ZP_20448891.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM586]
gi|433493877|ref|ZP_20450953.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM762]
gi|433495994|ref|ZP_20453043.1| putative lysine decarboxylase family protein [Neisseria
meningitidis M7089]
gi|433498089|ref|ZP_20455105.1| putative lysine decarboxylase family protein [Neisseria
meningitidis M7124]
gi|433500070|ref|ZP_20457061.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM174]
gi|433503610|ref|ZP_20460565.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM126]
gi|433506326|ref|ZP_20463245.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 9757]
gi|433508360|ref|ZP_20465246.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 12888]
gi|433510543|ref|ZP_20467386.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 4119]
gi|7225508|gb|AAF40736.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|120865868|emb|CAM09601.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254669217|emb|CBA08031.1| putative nucl protein [Neisseria meningitidis alpha14]
gi|254671552|emb|CBA09183.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|261391814|emb|CAX49269.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|304336912|gb|EFM03104.1| methionyl-tRNA formyltransferase [Neisseria meningitidis ATCC
13091]
gi|316985220|gb|EFV64172.1| possible lysine decarboxylase family protein [Neisseria
meningitidis H44/76]
gi|319411233|emb|CBY91640.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|325128993|gb|EGC51844.1| hypothetical protein TIGR00730 [Neisseria meningitidis N1568]
gi|325131572|gb|EGC54279.1| hypothetical protein TIGR00730 [Neisseria meningitidis M6190]
gi|325139173|gb|EGC61719.1| hypothetical protein TIGR00730 [Neisseria meningitidis ES14902]
gi|325141120|gb|EGC63623.1| hypothetical protein TIGR00730 [Neisseria meningitidis CU385]
gi|325145222|gb|EGC67502.1| hypothetical protein TIGR00730 [Neisseria meningitidis M01-240013]
gi|325197568|gb|ADY93024.1| conserved hypothetical protein TIGR00730 [Neisseria meningitidis
G2136]
gi|325199487|gb|ADY94942.1| conserved hypothetical protein TIGR00730 [Neisseria meningitidis
H44/76]
gi|325202889|gb|ADY98343.1| conserved hypothetical protein TIGR00730 [Neisseria meningitidis
M01-240149]
gi|325205368|gb|ADZ00821.1| conserved hypothetical protein TIGR00730 [Neisseria meningitidis
M04-240196]
gi|325207312|gb|ADZ02764.1| conserved hypothetical protein TIGR00730 [Neisseria meningitidis
NZ-05/33]
gi|389604919|emb|CCA43845.1| UPF0717 protein yvdD [Neisseria meningitidis alpha522]
gi|402319995|gb|EJU55499.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM255]
gi|402321466|gb|EJU56940.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 93004]
gi|402325973|gb|EJU61380.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM183]
gi|402326526|gb|EJU61928.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM140]
gi|402327832|gb|EJU63219.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM2781]
gi|402332940|gb|EJU68258.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM576]
gi|402334066|gb|EJU69361.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 98008]
gi|402338131|gb|EJU73370.1| methionyl-tRNA formyltransferase [Neisseria meningitidis 80179]
gi|402340617|gb|EJU75817.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM2657]
gi|402344913|gb|EJU80044.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM3001]
gi|402346093|gb|EJU81197.1| methionyl-tRNA formyltransferase [Neisseria meningitidis NM3081]
gi|432205185|gb|ELK61216.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 87255]
gi|432206604|gb|ELK62611.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 98080]
gi|432212547|gb|ELK68485.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 97021]
gi|432219440|gb|ELK75287.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2006087]
gi|432223655|gb|ELK79435.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 2002038]
gi|432224770|gb|ELK80533.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 97014]
gi|432230671|gb|ELK86345.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM586]
gi|432232055|gb|ELK87710.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM762]
gi|432236856|gb|ELK92460.1| putative lysine decarboxylase family protein [Neisseria
meningitidis M7124]
gi|432237636|gb|ELK93229.1| putative lysine decarboxylase family protein [Neisseria
meningitidis M7089]
gi|432237782|gb|ELK93373.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM174]
gi|432238812|gb|ELK94375.1| putative lysine decarboxylase family protein [Neisseria
meningitidis NM126]
gi|432244342|gb|ELK99837.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 9757]
gi|432250011|gb|ELL05409.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 12888]
gi|432250611|gb|ELL06004.1| putative lysine decarboxylase family protein [Neisseria
meningitidis 4119]
Length = 210
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 6 PHYLQSFELGGEIARLLD---CTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P + +AR L SG GPG+M+A KGA AGK V VG
Sbjct: 40 PQNHADYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAF-AGKSV---SVGLNIVLPH 95
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+PY + L F+ RK + A V +PGG GTLDE+FEIL L
Sbjct: 96 EQKPNPYQ--DIALRFSRFAERKAVFFRYS--------QAYVVMPGGFGTLDELFEILTL 145
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G P P +++ +F+ L +++ + + SL+ I D E ++Y
Sbjct: 146 VQ---TGKVPPRPIVLVG-KAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAY 201
Query: 183 LAE 185
L+E
Sbjct: 202 LSE 204
>gi|89069845|ref|ZP_01157180.1| decarboxylase family protein [Oceanicola granulosus HTCC2516]
gi|89044646|gb|EAR50762.1| decarboxylase family protein [Oceanicola granulosus HTCC2516]
Length = 283
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA+ AG G +G + Y+ E +F+ RK
Sbjct: 130 TGGGPGVMEAGNRGAVDAG----GRSIGLNIVLPHEQQPNAYVTPELCFNFHYFAIRKMH 185
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AV PGG GTLDE FE L LIQ R+ VP L+ + F+++
Sbjct: 186 FLMRA--------RAVCVFPGGFGTLDETFECLTLIQTGRMQM---VPVLLFGRE-FWER 233
Query: 148 LLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++D+ E+ GT++ ++ L++ ++ EAL +
Sbjct: 234 IVDWKA-LEEAGTISPADL-DLFRFVETAEEALEAI 267
>gi|359774734|ref|ZP_09278090.1| hypothetical protein GOEFS_132_00990 [Gordonia effusa NBRC 100432]
gi|359308217|dbj|GAB20868.1| hypothetical protein GOEFS_132_00990 [Gordonia effusa NBRC 100432]
Length = 271
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 12 FELGGEIARLLDCTTWS---GAGPGLMDAVTKGAMQAGKPVGGFKVG----KEAGEWTAS 64
++LG ++ L +S G GPG M++ KGA QAG G + + EW
Sbjct: 101 YQLGVDVGEALGRAGFSVITGGGPGAMESANKGAYQAGAQSIGLGIELPFEQRLNEW--- 157
Query: 65 NFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQ 124
++ L R+F ARK + A V LPGG GTLDE+FE L L+Q
Sbjct: 158 -------VDVGLNFRYFFARKTMFVKYA--------QGFVCLPGGFGTLDELFEALTLVQ 202
Query: 125 LERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
+I + P+ V+ F+ LL+++ +
Sbjct: 203 TNKI-TRFPI---VLVGQEFWSGLLEWIKNV 229
>gi|222823280|ref|YP_002574853.1| lysine decarboxylase [Campylobacter lari RM2100]
gi|222538501|gb|ACM63602.1| lysine decarboxylase family protein [Campylobacter lari RM2100]
Length = 211
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 33/183 (18%)
Query: 22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLP--------LE 73
L + SG G G+M A GAMQ+ +A + F+ +LP LE
Sbjct: 50 LGYSIISGGGAGIMQAANYGAMQS-----------QASHLKSFGFNIHLPFEQKANDFLE 98
Query: 74 TYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP 133
+T + + RK LI ++ A V PGG GTLDE FEIL L QL +
Sbjct: 99 YNITFKSLAIRKMALIQKSL--------AFVIFPGGFGTLDEFFEILTLKQL---SFKKN 147
Query: 134 VPFLVMNYDSFYKKLLDFLG-DCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSI 192
VP +++ F++ L +F+ GT++K++ + I D E + + E + SS
Sbjct: 148 VPIILVG-QKFWQSLDEFIKTSLLGLGTISKNDELK-YSISDDLDEIIRMIKENDENSSC 205
Query: 193 DKR 195
++R
Sbjct: 206 NER 208
>gi|393775969|ref|ZP_10364266.1| hypothetical protein MW7_0936 [Ralstonia sp. PBA]
gi|392716912|gb|EIZ04489.1| hypothetical protein MW7_0936 [Ralstonia sp. PBA]
Length = 315
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 27/197 (13%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGE 60
+ P+Y ++ + IARL + SG GPG+M+A KGA AGK VG
Sbjct: 133 ESPYYAKTVD----IARLFSDAGFAVISGGGPGIMEAANKGA-HAGKSAS---VGLNIEL 184
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+PY + + R F RK + + A + +PGG GTLDE+ E+L
Sbjct: 185 PHEQRGNPYQ--DISMRFRHFFTRKVSFVK--------NSDAFIVMPGGFGTLDELAEVL 234
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L+Q G VP +VM +F+ LL+ F G ++ ++ + K+ D +A
Sbjct: 235 TLVQ---TGKSRHVP-IVMVGSTFWHGLLEWFRHTLLPMGVISPGDL-DIMKVVDDPHDA 289
Query: 180 LSYLAEFYDLSSIDKRV 196
L + FY+ D +
Sbjct: 290 LEAVYAFYETRETDAAI 306
>gi|329939597|ref|ZP_08288898.1| hypothetical protein SGM_4390 [Streptomyces griseoaurantiacus M045]
gi|329301167|gb|EGG45062.1| hypothetical protein SGM_4390 [Streptomyces griseoaurantiacus M045]
Length = 252
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 23/184 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEW 61
D P Y LG + +G GPG M+A KGA +A G VG G ++ E G
Sbjct: 86 DSPEYDAGVRLGRGLVEA-GFAVITGGGPGAMEAANKGACEANGTSVGLGIELPFEQG-- 142
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ + L R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 143 ----LNQYV--DVGLNFRYFFVRKMMFVKYA--------QGFVVLPGGLGTLDELFEALT 188
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALS 181
L+Q +++ + P+ V+ +++ L+D+L + A +L+ + D EA++
Sbjct: 189 LVQTKKV-TRFPI---VLFGSAYWGGLVDWLENTLIAQGKAAQSDLTLFHVTDDVDEAVA 244
Query: 182 YLAE 185
+++
Sbjct: 245 LVSK 248
>gi|311105000|ref|YP_003977853.1| lysine decarboxylase [Achromobacter xylosoxidans A8]
gi|310759689|gb|ADP15138.1| possible lysine decarboxylase family protein [Achromobacter
xylosoxidans A8]
Length = 230
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ PHY + + +A +G GPG+M+A KGA +AG G +G
Sbjct: 51 NSPHYETTIAISAALADA-GFAVIAGGGPGIMEAANKGAFEAG----GTSIGLNISLPHE 105
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
++ + Y + L+ +F +RK A VA+PGG GTLDE+FE L LI
Sbjct: 106 AHNNEYQTIS--LSFEYFFSRKATFF--------MHSFAYVAMPGGFGTLDELFEALTLI 155
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLG 153
Q ++ P P +++ + ++ L+++LG
Sbjct: 156 QTGKVP---PAPIVLVGSE-YWSGLVEWLG 181
>gi|359798524|ref|ZP_09301095.1| lysine decarboxylase [Achromobacter arsenitoxydans SY8]
gi|359363346|gb|EHK65072.1| lysine decarboxylase [Achromobacter arsenitoxydans SY8]
Length = 220
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ P+Y + + +A +G GPG+M+A KGA +AG G VG
Sbjct: 41 NSPYYETTIAISAALAEA-GFAVIAGGGPGIMEAANKGAFEAG----GTSVGLNISLPHE 95
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
++ + Y + L+ +F RK A VA+PGG GTLDE+FE L LI
Sbjct: 96 AHNNEYQTIS--LSFEYFFPRKAAFF--------MHSFAYVAMPGGFGTLDELFEALTLI 145
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
Q ++ P P +++ + ++ L ++LGD + L+ I D + + +
Sbjct: 146 QTGKVP---PAPIVLVGSE-YWSGLAEWLGDQVLGNGMIGAHDLDLFIIEDDPVKVVRKV 201
Query: 184 AEFYD 188
EF++
Sbjct: 202 VEFHE 206
>gi|190891098|ref|YP_001977640.1| hypothetical protein RHECIAT_CH0001483 [Rhizobium etli CIAT 652]
gi|190696377|gb|ACE90462.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 207
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 70/162 (43%), Gaps = 22/162 (13%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGG----FKVGKE 57
G D H LG EIA + G G+M AV G + G V G F + E
Sbjct: 20 GRDPSHMAAGRALGREIAEYGLRLVYGGGTKGIMGAVASGVLSGGGQVTGIIPDFLIDME 79
Query: 58 AGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMF 117
A H L + ARKH + + R+D A VALPGG+GTL+E+
Sbjct: 80 A------TRHSLGQLNELIVTPDMHARKHTMFE---RSD-----AFVALPGGIGTLEEIV 125
Query: 118 EILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG 159
EI+ QL R E P+ F N + F+ +++ L D G
Sbjct: 126 EIMTWAQLGR--HEKPMVF--ANINGFWDPMMELLRHMTDEG 163
>gi|423301004|ref|ZP_17279028.1| TIGR00730 family protein [Bacteroides finegoldii CL09T03C10]
gi|408472339|gb|EKJ90867.1| TIGR00730 family protein [Bacteroides finegoldii CL09T03C10]
Length = 195
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 39/198 (19%)
Query: 5 HPHYLQSFE-LGGEIA----RLLDCTTWSGAGP-GLMDAVTKGAMQAGKPVGG----FKV 54
+P Y ++ E LGG +A RL++ GAG GLM AV ++ G V G F V
Sbjct: 18 NPVYFKAAEELGGLLAEHHVRLIN-----GAGSIGLMRAVADAVLKNGGEVTGVIPRFMV 72
Query: 55 GKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLD 114
+ W + + +E+ RK + + + ++ALPGG GTL+
Sbjct: 73 EQN---WQHTGLTELIEVES------MHERKQKMANLS--------DGIIALPGGCGTLE 115
Query: 115 EMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD 174
E+ EI+ QL G L P +++N + F+ LL+ LG D + + +WK+
Sbjct: 116 ELLEIITWKQL---GLYLN-PIIILNVNGFFDPLLEMLGKAID-ENFMRQQHGDIWKVAQ 170
Query: 175 SNSEALSYLAE--FYDLS 190
+ EAL L E +D+S
Sbjct: 171 TPEEALRLLYETPIWDIS 188
>gi|399031013|ref|ZP_10731192.1| TIGR00730 family protein [Flavobacterium sp. CF136]
gi|398070689|gb|EJL61977.1| TIGR00730 family protein [Flavobacterium sp. CF136]
Length = 193
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 2 GPDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEW 61
G D + Q+ LG +A+ + GA GLM AV G + G V G ++
Sbjct: 13 GTDEIYKEQAALLGQTLAKQNIELVYGGANVGLMGAVADGCLNEGGKVIGV-----LPDF 67
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
S + L + RK + ND CD V+ALPGG GTLDE+FE++
Sbjct: 68 LRSKEIAHTGLTELILVESMHERKTKM------NDLCD--GVIALPGGFGTLDELFEMIT 119
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWG 159
QL P ++N + FY LL+ + D G
Sbjct: 120 WAQL----GLHKKPIAILNINGFYDSLLELMQTMTDKG 153
>gi|123969153|ref|YP_001010011.1| dehydrogenase [Prochlorococcus marinus str. AS9601]
gi|123199263|gb|ABM70904.1| Predicted dehydrogenase [Prochlorococcus marinus str. AS9601]
Length = 288
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 7 HYLQSFELGGEIARL----LDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAG 59
HY QS ++A + +C + +G GPG+M+A +GA +A G +
Sbjct: 116 HYYQSAREFSKLASINNQNKNCNSHVIVTGGGPGIMEAANRGAFEANCKSIGLNISLPNE 175
Query: 60 EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEI 119
+ + P L + +F+ RK + +V A V PGG GTLDE+FE+
Sbjct: 176 QIPNAFITPGLCFK----FNYFALRKIHFVMRSV--------AAVFFPGGFGTLDELFEL 223
Query: 120 LALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
L L Q G + +P ++ + ++ K+++F D G + +DE +L++ D+ SEA
Sbjct: 224 LTLCQ---TGMKTKIPIILFGRE-YWNKIINF-EYLADLGLI-EDEHLNLFQYADTASEA 277
>gi|399023606|ref|ZP_10725663.1| TIGR00730 family protein [Chryseobacterium sp. CF314]
gi|398082519|gb|EJL73267.1| TIGR00730 family protein [Chryseobacterium sp. CF314]
Length = 250
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A KGA A G +G +F+PY+ + +F RK + +
Sbjct: 105 MEAGNKGAFNAN----GRSIGLNIDLPFEQHFNPYINKSYSMNFDYFFVRKVMFVKYS-- 158
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-FLG 153
+ +PGG GTLDE+ E + LIQ +IG + P+ V+ F+ LLD F
Sbjct: 159 ------QGFIVMPGGFGTLDELTEAITLIQTNKIG-KFPI---VLVGSEFWGGLLDWFKT 208
Query: 154 DCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSSID 193
G +A+ ++ L+++ D+ EA++++ FYD S++
Sbjct: 209 TLLKEGMIAEHDL-DLYRVVDTADEAVAHIKAFYDKYSVN 247
>gi|254467978|ref|ZP_05081384.1| conserved hypothetical protein TIGR00730 [beta proteobacterium
KB13]
gi|207086788|gb|EDZ64071.1| conserved hypothetical protein TIGR00730 [beta proteobacterium
KB13]
Length = 242
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 12 FELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQAGKPVGGFKV--GKEAGEWTASNF 66
++L EIA L + + +G GPGLM+A +KGA G + KE N
Sbjct: 64 YKLSEEIAFKLSESGFNIITGGGPGLMEAASKGAFNGKSKSIGLNIILPKE------QNP 117
Query: 67 HPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLE 126
+PY + + ++F RK + A A V PGG GTLDE E+L LIQ
Sbjct: 118 NPYQDIS--INFKYFFMRKVMFVKYAF--------AYVVAPGGFGTLDEFSEVLTLIQTN 167
Query: 127 RIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186
+ VP +++ D F++ L D+ + A E S++KI + + ++++ +
Sbjct: 168 K---SKKVPVILVGVD-FWQGLQDWFQNKIIQEKFADQEDLSIFKISNDPDDIVNFIFDC 223
Query: 187 Y 187
Y
Sbjct: 224 Y 224
>gi|17988615|ref|NP_541248.1| 3-isopropylmalate dehydrogenase [Brucella melitensis bv. 1 str.
16M]
gi|62317856|ref|YP_223709.1| hypothetical protein BruAb2_0967 [Brucella abortus bv. 1 str.
9-941]
gi|83269835|ref|YP_419126.1| hypothetical protein BAB2_0990 [Brucella melitensis biovar Abortus
2308]
gi|225686782|ref|YP_002734754.1| hypothetical protein BMEA_B1013 [Brucella melitensis ATCC 23457]
gi|256015786|ref|YP_003105795.1| hypothetical protein BMI_II1021 [Brucella microti CCM 4915]
gi|340792789|ref|YP_004758253.1| hypothetical protein BPI_II1083 [Brucella pinnipedialis B2/94]
gi|17984417|gb|AAL53512.1| 3-isopropylmalate dehydrogenase [Brucella melitensis bv. 1 str.
16M]
gi|62198049|gb|AAX76348.1| conserved hypothetical protein TIGR00730, hypothetical [Brucella
abortus bv. 1 str. 9-941]
gi|82940109|emb|CAJ13156.1| Conserved hypothetical protein 730 [Brucella melitensis biovar
Abortus 2308]
gi|225642887|gb|ACO02800.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|255998446|gb|ACU50133.1| hypothetical protein BMI_II1021 [Brucella microti CCM 4915]
gi|340561248|gb|AEK56485.1| hypothetical protein BPI_II1083 [Brucella pinnipedialis B2/94]
Length = 276
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ + +F+ RK
Sbjct: 133 TGGGPGVMEAGNRGAADVGAPTIGLNIVLPHEQ--APN--AYVTPDLCFNFHYFAIRKMH 188
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AV PGG GT+DE+FE + LIQ R+ +P ++ + + K
Sbjct: 189 FLMRA--------KAVCVFPGGFGTMDELFEAMTLIQTNRMER---MPLILFGKEFWTKA 237
Query: 148 L-LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ ++FL + GT++ ++ L ++ EA ++ +FY L
Sbjct: 238 INIEFLA---EQGTISPADI-ELLNFVETADEAWGHIKDFYKL 276
>gi|408829456|ref|ZP_11214346.1| hypothetical protein SsomD4_19834 [Streptomyces somaliensis DSM
40738]
Length = 251
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 6 PHYLQSFELGGEIARLLDCTTW---SGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGE 60
P +E G I R L + +G GPG M+A +GA +A G VG G ++ E G
Sbjct: 83 PAGTPEYEAGVRIGRALAEAGFAVVTGGGPGAMEAANRGAREAKGVSVGLGIELPFEQG- 141
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
N H ++ + R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 142 ---LNQH----VDIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELFEAL 186
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ + P+ V+ ++ L+D+L D A + L+ + D EA+
Sbjct: 187 TLVQTRKV-TRFPI---VLFGTEYWSGLVDWLRDTVVAQGKASEHDLMLFHVTDDVDEAV 242
Query: 181 SYLAE 185
+ +++
Sbjct: 243 ALVSK 247
>gi|326330889|ref|ZP_08197190.1| methionyl-tRNA formyltransferase [Nocardioidaceae bacterium
Broad-1]
gi|325951419|gb|EGD43458.1| methionyl-tRNA formyltransferase [Nocardioidaceae bacterium
Broad-1]
Length = 239
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 23/151 (15%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVG-GFKVGKEAGEW 61
DHP Y Q+ +G +A +G GPG M+A KGA++AG + +G G ++ EA
Sbjct: 74 DHPTYAQAEAVGRGLAEA-GFVVITGGGPGTMEAANKGALEAGGESIGLGIELPFEA--- 129
Query: 62 TASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILA 121
+ Y+ L R+F RK + + V +PGG+GT+DE+FE +
Sbjct: 130 ---RLNDYVSFG--LNFRYFFVRKMMFVKYS--------QGYVVMPGGLGTMDELFEAMT 176
Query: 122 LIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152
L Q ++I ++ P+ + + + ++ LLD++
Sbjct: 177 LSQTKKI-TQFPIVLMGVKH---WEGLLDWM 203
>gi|365860428|ref|ZP_09400238.1| hypothetical protein SPW_0540 [Streptomyces sp. W007]
gi|364010158|gb|EHM31088.1| hypothetical protein SPW_0540 [Streptomyces sp. W007]
Length = 261
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 25/180 (13%)
Query: 6 PHYLQSFELGGEIAR-LLDC--TTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGE 60
P +E G +I + L+D +G GPG M+A KGA +A G VG G ++ E+G
Sbjct: 93 PDGSPEYEAGVQIGKALVDAGFAVITGGGPGAMEAANKGAREAKGVSVGLGIELPFESG- 151
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+P++ + + R+F RK + A V LPGG+GTLDE+FE L
Sbjct: 152 -----LNPHV--DIGVNFRYFFVRKTMFVKYA--------QGFVVLPGGLGTLDELFEAL 196
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180
L+Q ++ + P+ V+ +++ L+D+L D A ++ L+ + D EA+
Sbjct: 197 TLVQTGKV-TRFPI---VLFGTAYWGGLIDWLRDTVVAQGKASEKDLMLFHVTDDVEEAV 252
>gi|441165220|ref|ZP_20968550.1| hypothetical protein SRIM_31360 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440616106|gb|ELQ79261.1| hypothetical protein SRIM_31360 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 250
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 22/160 (13%)
Query: 28 SGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK 85
+G GPG+M+A +GA +A G VG G ++ E G +P++ + + R+F RK
Sbjct: 107 TGGGPGVMEAANRGAREAKGVSVGLGIELPFEQG------MNPHV--DIGVNFRYFFVRK 158
Query: 86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145
+ A V LPGG+GTLDE+FE L L+Q ++ + P+ V+ ++
Sbjct: 159 TMFVKYA--------QGFVVLPGGMGTLDELFEALTLVQTRKV-TRFPI---VLFGTEYW 206
Query: 146 KKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAE 185
L+D+L D A + L+ + D EA++ +++
Sbjct: 207 SGLVDWLRDTVVAQGKASEHDLLLFHVTDDVDEAVALVSK 246
>gi|340783453|ref|YP_004750060.1| hypothetical protein Atc_2711 [Acidithiobacillus caldus SM-1]
gi|340557604|gb|AEK59358.1| conserved hypothetical protein [Acidithiobacillus caldus SM-1]
Length = 245
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+HP Y ++ E+ +++ + SG GPG+M+A KGA + G+ +G
Sbjct: 62 PEHPWYRKTQEIATKLSNA-GFSVISGGGPGVMEAANKGAFRGT----GYSIGLNIELPH 116
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY + L+ F +RK + A A V +PGG GTLDE+ E L L
Sbjct: 117 EQHSNPYQDIS--LSFEHFYSRKVMFMKYA--------AAYVVMPGGFGTLDELAECLTL 166
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G +P +++ SF+ L+ + D G E L + D ++
Sbjct: 167 VQ---TGKTRRMPIILVE-SSFWNGLIQWWRDVLLAGGTINAEDLDLVTVIDDADAVVAA 222
Query: 183 LAEFYD 188
+ + Y+
Sbjct: 223 IFDHYE 228
>gi|295836676|ref|ZP_06823609.1| decarboxylase [Streptomyces sp. SPB74]
gi|333024614|ref|ZP_08452678.1| putative decarboxylase [Streptomyces sp. Tu6071]
gi|197699709|gb|EDY46642.1| decarboxylase [Streptomyces sp. SPB74]
gi|332744466|gb|EGJ74907.1| putative decarboxylase [Streptomyces sp. Tu6071]
Length = 249
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQA-GKPVG-GFKVGKEAGE 60
PD P Y LG + +G GPG M+A +GA +A G VG G ++ E G
Sbjct: 82 PDSPEYALGVRLGRALTEA-GYAVITGGGPGAMEAANRGAWEAQGTSVGLGIELPFEQG- 139
Query: 61 WTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEIL 120
+ Y+ + + R+F RK + A V LPGG GTLDE+FE L
Sbjct: 140 -----VNKYV--DIAVNFRYFFVRKVMFVKYA--------RGFVVLPGGFGTLDELFEAL 184
Query: 121 ALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155
L+Q +++ + P+ V+ +++ L+D+L D
Sbjct: 185 TLVQTQKV-TRFPI---VLFGTAYWGGLVDWLRDT 215
>gi|294010173|ref|YP_003543633.1| putative nucleotide-binding protein [Sphingobium japonicum UT26S]
gi|390167566|ref|ZP_10219550.1| putative nucleotide-binding protein [Sphingobium indicum B90A]
gi|292673503|dbj|BAI95021.1| putative nucleotide-binding protein [Sphingobium japonicum UT26S]
gi|389589835|gb|EIM67846.1| putative nucleotide-binding protein [Sphingobium indicum B90A]
Length = 292
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARK-H 86
SG GP +M+A +GA G+ G + + P L + + +F+ RK H
Sbjct: 142 SGGGPSIMEAANRGAADVGQTTIGMNIVLPHEQSPNRFVTPELSFQFH----YFALRKMH 197
Query: 87 GLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK 146
L+ A+ PGG GT DEMFE+L LIQ G P+P L+ + F+
Sbjct: 198 FLLRA---------RALAVFPGGFGTFDEMFELLTLIQ---TGKMKPIPVLLFGRE-FWT 244
Query: 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
+++DF D G ++ ++ +L ++ +A + FY+
Sbjct: 245 RVVDFEA-LADEGVISPSDL-NLLTWVETAEDAWEAVQRFYE 284
>gi|149201026|ref|ZP_01878001.1| decarboxylase family protein [Roseovarius sp. TM1035]
gi|149145359|gb|EDM33385.1| decarboxylase family protein [Roseovarius sp. TM1035]
Length = 271
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 34/169 (20%)
Query: 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV----GKEAGEWTAS----NFHPYLPLET 74
D +G GPG+M+A +GA AG G + + E+ NFH
Sbjct: 123 DYVIATGGGPGVMEAGNRGAADAGGASIGLNIVLPHEQAPNEYVTPGLCFNFH------- 175
Query: 75 YLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPV 134
+F+ RK + A A+ PGG GTLDEMFE L LIQ +R+ V
Sbjct: 176 -----YFAIRKMHFLMRA--------RAICVFPGGFGTLDEMFEALTLIQTDRMKR---V 219
Query: 135 PFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
PFL+ +F++ ++++ E GT++ +++ L++ ++ EA+ +
Sbjct: 220 PFLLFGA-TFWQSIINWEALSE-AGTISAEDL-DLFQFVETADEAMQII 265
>gi|72382301|ref|YP_291656.1| dape gene and orf2 [Prochlorococcus marinus str. NATL2A]
gi|72002151|gb|AAZ57953.1| putative dape gene and orf2 [Prochlorococcus marinus str. NATL2A]
Length = 282
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRF--FSARK 85
+G GPG+M+A +GA A G + + HP + L +F F+ RK
Sbjct: 143 TGGGPGIMEAANRGAFDADCKSIGLNIS------LPNEQHPNAYITPGLCFKFNYFALRK 196
Query: 86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145
+ +V A V PGG GT DE+FE+L L Q G + +P ++ D ++
Sbjct: 197 FHFVMRSV--------AAVFFPGGFGTFDELFELLTLRQ---TGMKTEIPIILFGRD-YW 244
Query: 146 KKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179
K+++F D G ++ DE L++ DS SEA
Sbjct: 245 SKVINFQF-LSDHGLIS-DEHMKLFQYADSASEA 276
>gi|23500750|ref|NP_700190.1| hypothetical protein BRA1027 [Brucella suis 1330]
gi|161621075|ref|YP_001594961.1| hypothetical protein BCAN_B1048 [Brucella canis ATCC 23365]
gi|163845141|ref|YP_001622796.1| hypothetical protein BSUIS_B1023 [Brucella suis ATCC 23445]
gi|376278972|ref|YP_005109005.1| hypothetical protein BSVBI22_B1018 [Brucella suis VBI22]
gi|384223532|ref|YP_005614697.1| hypothetical protein BS1330_II1019 [Brucella suis 1330]
gi|23464404|gb|AAN34195.1| conserved hypothetical protein TIGR00730, putative [Brucella suis
1330]
gi|161337886|gb|ABX64190.1| Hypothetical protein BCAN_B1048 [Brucella canis ATCC 23365]
gi|163675864|gb|ABY39974.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|343384980|gb|AEM20471.1| hypothetical protein BS1330_II1019 [Brucella suis 1330]
gi|358260410|gb|AEU08143.1| hypothetical protein BSVBI22_B1018 [Brucella suis VBI22]
Length = 276
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ + +F+ RK
Sbjct: 133 TGGGPGVMEAGNRGAADVGAPTIGLNIVLPHEQ--APN--AYVTPDLCFNFHYFAIRKMH 188
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AV PGG GT+DE+FE + LIQ R+ +P ++ + + K
Sbjct: 189 FLMRA--------KAVCVFPGGFGTMDELFEAMTLIQTNRMER---MPLILFGKEFWTKA 237
Query: 148 L-LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ ++FL + GT++ ++ L ++ EA ++ +FY L
Sbjct: 238 INIEFLA---EQGTISPADI-ELLNFVETADEAWGHIKDFYKL 276
>gi|255020062|ref|ZP_05292134.1| hypothetical protein ACA_2334 [Acidithiobacillus caldus ATCC 51756]
gi|254970489|gb|EET27979.1| hypothetical protein ACA_2334 [Acidithiobacillus caldus ATCC 51756]
Length = 239
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 3 PDHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWT 62
P+HP Y ++ E+ +++ + SG GPG+M+A KGA + G+ +G
Sbjct: 56 PEHPWYRKTQEIATKLSNA-GFSVISGGGPGVMEAANKGAFRGT----GYSIGLNIELPH 110
Query: 63 ASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILAL 122
+ +PY + L+ F +RK + A A V +PGG GTLDE+ E L L
Sbjct: 111 EQHSNPYQDIS--LSFEHFYSRKVMFMKYA--------AAYVVMPGGFGTLDELAECLTL 160
Query: 123 IQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSY 182
+Q G +P +++ SF+ L+ + D G E L + D ++
Sbjct: 161 VQ---TGKTRRMPIILVE-SSFWNGLIQWWRDVLLAGGTINAEDLDLVTVIDDADAVVAA 216
Query: 183 LAEFYD 188
+ + Y+
Sbjct: 217 IFDHYE 222
>gi|222084715|ref|YP_002543244.1| hypothetical protein Arad_0687 [Agrobacterium radiobacter K84]
gi|398379654|ref|ZP_10537774.1| putative Rossmann fold nucleotide-binding protein [Rhizobium sp.
AP16]
gi|221722163|gb|ACM25319.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
gi|397722286|gb|EJK82830.1| putative Rossmann fold nucleotide-binding protein [Rhizobium sp.
AP16]
Length = 290
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 35 MDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVR 94
M+A +GA + G P G + + A N Y+ E +F+ RK + A
Sbjct: 150 MEAGNRGASEEGAPSIGLNIVLPHEQ--APNV--YVTPELSFNFHYFAIRKMHFMVRA-- 203
Query: 95 NDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154
A+ PGG GTLDE+FE L LIQ R+ LP L++ + F++ +++F
Sbjct: 204 ------KAIAVFPGGFGTLDELFECLTLIQTGRM-ERLP---LILFGEKFWRDIINFDAL 253
Query: 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYD 188
E +GT+A D+V L D+ +A +++FY+
Sbjct: 254 AE-FGTIAPDDV-KLISFVDTAEDAWKIVSDFYE 285
>gi|421484078|ref|ZP_15931650.1| lysine decarboxylase [Achromobacter piechaudii HLE]
gi|400197785|gb|EJO30749.1| lysine decarboxylase [Achromobacter piechaudii HLE]
Length = 208
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 21/193 (10%)
Query: 4 DHPHYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTA 63
+ PHY + + +A +G GPG+M+A KGA +AG G +G
Sbjct: 29 NSPHYETTVAISAALAGA-GFAVIAGGGPGIMEAANKGAFEAG----GTSIGLNISLPHE 83
Query: 64 SNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALI 123
++ + Y + L+ +F +RK A VA+PGG GTLDE+FE L LI
Sbjct: 84 AHNNEYQTIS--LSFEYFFSRKATFF--------MHSFAYVAMPGGFGTLDELFEALTLI 133
Query: 124 QLERIGSELPVPFLVMNYDSFYKKLLDFL-GDCEDWGTVAKDEVASLWKICDSNSEALSY 182
Q ++ P P +++ + ++ L+++L G G + ++ L+ I D + +
Sbjct: 134 QTGKVP---PAPIVLVGSE-YWSGLVEWLGGQVLANGMIGAHDL-DLFIIEDDPVKVVRR 188
Query: 183 LAEFYDLSSIDKR 195
+ EF++ + D +
Sbjct: 189 VVEFHEKVNSDAQ 201
>gi|260434374|ref|ZP_05788344.1| decarboxylase family protein [Synechococcus sp. WH 8109]
gi|260412248|gb|EEX05544.1| decarboxylase family protein [Synechococcus sp. WH 8109]
Length = 294
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 22/158 (13%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHP--YLPLETYLTCRFFSARK 85
+G GPG+M+A +GA +AG G + + HP ++ + +FS RK
Sbjct: 146 TGGGPGIMEAANRGAFEAGCRSIGLNITLPFEQ------HPNHFITPDLCFKFNYFSLRK 199
Query: 86 HGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145
+ ++ + PGG GTLDE+FE+L L Q +G++ +P ++ + F+
Sbjct: 200 FHFVMRSI--------GAILFPGGFGTLDELFELLTLRQ---VGTKGSMPIVLFGTE-FW 247
Query: 146 KKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183
++L+DF + G ++ D++ L DS EA ++
Sbjct: 248 RRLVDF-NYLAEMGLISDDDL-DLIHFSDSAEEAWDFI 283
>gi|261753973|ref|ZP_05997682.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261743726|gb|EEY31652.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
Length = 282
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ + +F+ RK
Sbjct: 139 TGGGPGVMEAGNRGAADVGAPTIGLNIVLPHEQ--APN--AYVTPDLCFNFHYFAIRKMH 194
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AV PGG GT+DE+FE + LIQ R+ +P ++ + + K
Sbjct: 195 FLMRA--------KAVCVFPGGFGTMDELFEAMTLIQTNRMER---MPLILFGKEFWTKA 243
Query: 148 L-LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ ++FL + GT++ ++ L ++ EA ++ +FY L
Sbjct: 244 INIEFLA---EQGTISPADI-ELLNFVETADEAWGHIKDFYKL 282
>gi|260567727|ref|ZP_05838196.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376277463|ref|YP_005153524.1| hypothetical protein BCA52141_II1527 [Brucella canis HSK A52141]
gi|260154392|gb|EEW89473.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363405837|gb|AEW16131.1| hypothetical protein BCA52141_II1527 [Brucella canis HSK A52141]
Length = 279
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ + +F+ RK
Sbjct: 136 TGGGPGVMEAGNRGAADVGAPTIGLNIVLPHEQ--APN--AYVTPDLCFNFHYFAIRKMH 191
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AV PGG GT+DE+FE + LIQ R+ +P ++ + + K
Sbjct: 192 FLMRA--------KAVCVFPGGFGTMDELFEAMTLIQTNRMER---MPLILFGKEFWTKA 240
Query: 148 L-LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ ++FL + GT++ ++ L ++ EA ++ +FY L
Sbjct: 241 INIEFLA---EQGTISPADI-ELLNFVETADEAWGHIKDFYKL 279
>gi|157413971|ref|YP_001484837.1| Rossmann fold nucleotide-binding protein [Prochlorococcus marinus
str. MIT 9215]
gi|157388546|gb|ABV51251.1| Predicted Rossmann fold nucleotide-binding protein [Prochlorococcus
marinus str. MIT 9215]
Length = 294
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 31/189 (16%)
Query: 7 HYLQSFELGGEIARL--LDCTTWS--------GAGPGLMDAVTKGAMQAGKPVGGFKVGK 56
HY S E+++L LD T S G GPG+M+A +GA AG G +
Sbjct: 122 HYYSS---ARELSKLISLDSKTKSSNSHVIVTGGGPGIMEAANRGAFDAGCKSIGLNISL 178
Query: 57 EAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEM 116
+ S P L + +F+ RK + T+ V PGG GTLDE+
Sbjct: 179 PNEQHPNSFITPGLCFK----FNYFAMRKFHFV--------MRSTSAVFFPGGFGTLDEL 226
Query: 117 FEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSN 176
FE+L L Q G +P ++ S+++K+++F D G + ++++ S+++ D+
Sbjct: 227 FELLTLRQTNMKG---KIPIILFGR-SYWEKVINF-QFLSDMGLIGENDL-SIFQYADTA 280
Query: 177 SEALSYLAE 185
+EA + + +
Sbjct: 281 NEAWNLIKQ 289
>gi|312138864|ref|YP_004006200.1| lysine decarboxylase [Rhodococcus equi 103S]
gi|311888203|emb|CBH47515.1| putative lysine decarboxylase [Rhodococcus equi 103S]
Length = 268
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 36/167 (21%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLT--------CR 79
+G GPG+M+A +GA + G G+ +G LP E L R
Sbjct: 112 TGGGPGVMEAANRGASENG----GYSIG----------LGIELPFEQRLNDWVDLGINFR 157
Query: 80 FFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139
+F ARK + + A + LPGG GTLDE+FE L L+Q +I + P+ V+
Sbjct: 158 YFFARKTMFVKYS--------QAFICLPGGFGTLDELFEALTLVQTRKI-TRFPI---VL 205
Query: 140 NYDSFYKKLLDFLGDC-EDWGTVAKDEVASLWKICDSNSEALSYLAE 185
F+ L+D+L E G ++ ++ L + DS E + + E
Sbjct: 206 VGTEFWSGLMDWLRSALERSGKISPGDI-DLIHVTDSIDEVVRIVVE 251
>gi|148558260|ref|YP_001257938.1| hypothetical protein BOV_A0968 [Brucella ovis ATCC 25840]
gi|189023106|ref|YP_001932847.1| hypothetical protein BAbS19_II09160 [Brucella abortus S19]
gi|256262084|ref|ZP_05464616.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|260545091|ref|ZP_05820912.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260565072|ref|ZP_05835557.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|261757215|ref|ZP_06000924.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|297249208|ref|ZP_06932909.1| hypothetical protein BAYG_01947 [Brucella abortus bv. 5 str. B3196]
gi|306839549|ref|ZP_07472356.1| 3-isopropylmalate dehydrogenase [Brucella sp. NF 2653]
gi|376271525|ref|YP_005114570.1| Rossmann fold nucleotide-binding protein [Brucella abortus A13334]
gi|384213541|ref|YP_005602624.1| hypothetical protein BM590_B1003 [Brucella melitensis M5-90]
gi|384410643|ref|YP_005599263.1| hypothetical protein BM28_B1005 [Brucella melitensis M28]
gi|384447140|ref|YP_005661358.1| hypothetical protein [Brucella melitensis NI]
gi|423168239|ref|ZP_17154941.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI435a]
gi|423172326|ref|ZP_17159000.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI474]
gi|423173943|ref|ZP_17160613.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI486]
gi|423175819|ref|ZP_17162485.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI488]
gi|423181755|ref|ZP_17168395.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI010]
gi|423184888|ref|ZP_17171524.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI016]
gi|423188041|ref|ZP_17174654.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI021]
gi|423190458|ref|ZP_17177067.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI259]
gi|148369545|gb|ABQ62417.1| putative conserved hypothetical protein TIGR00730 [Brucella ovis
ATCC 25840]
gi|189021680|gb|ACD74401.1| Conserved hypothetical protein 730 [Brucella abortus S19]
gi|260098362|gb|EEW82236.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260152715|gb|EEW87808.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|261737199|gb|EEY25195.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|263091773|gb|EEZ16104.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|297173077|gb|EFH32441.1| hypothetical protein BAYG_01947 [Brucella abortus bv. 5 str. B3196]
gi|306405381|gb|EFM61653.1| 3-isopropylmalate dehydrogenase [Brucella sp. NF 2653]
gi|326411190|gb|ADZ68254.1| conserved hypothetical protein [Brucella melitensis M28]
gi|326554481|gb|ADZ89120.1| conserved hypothetical protein [Brucella melitensis M5-90]
gi|349745137|gb|AEQ10679.1| hypothetical protein BMNI_II0969 [Brucella melitensis NI]
gi|363402697|gb|AEW19666.1| putative Rossmann fold nucleotide-binding protein [Brucella abortus
A13334]
gi|374536748|gb|EHR08268.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI474]
gi|374538732|gb|EHR10239.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI435a]
gi|374539944|gb|EHR11446.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI486]
gi|374546345|gb|EHR17805.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI010]
gi|374547188|gb|EHR18647.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI016]
gi|374554221|gb|EHR25634.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI021]
gi|374556498|gb|EHR27903.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI259]
gi|374556619|gb|EHR28023.1| TIGR00730 family protein [Brucella abortus bv. 1 str. NI488]
Length = 279
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 20/163 (12%)
Query: 28 SGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHG 87
+G GPG+M+A +GA G P G + + A N Y+ + +F+ RK
Sbjct: 136 TGGGPGVMEAGNRGAADVGAPTIGLNIVLPHEQ--APN--AYVTPDLCFNFHYFAIRKMH 191
Query: 88 LIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147
+ A AV PGG GT+DE+FE + LIQ R+ +P ++ + + K
Sbjct: 192 FLMRA--------KAVCVFPGGFGTMDELFEAMTLIQTNRMER---MPLILFGKEFWTKA 240
Query: 148 L-LDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189
+ ++FL + GT++ ++ L ++ EA ++ +FY L
Sbjct: 241 INIEFLA---EQGTISPADI-ELLNFVETADEAWGHIKDFYKL 279
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,460,487,236
Number of Sequences: 23463169
Number of extensions: 140837843
Number of successful extensions: 314373
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 2314
Number of HSP's that attempted gapping in prelim test: 311112
Number of HSP's gapped (non-prelim): 3373
length of query: 209
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 73
effective length of database: 9,168,204,383
effective search space: 669278919959
effective search space used: 669278919959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)