Query 028413
Match_columns 209
No_of_seqs 140 out of 1138
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 4.7E-47 1E-51 311.3 18.5 165 4-186 13-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 1.3E-39 2.8E-44 272.5 17.8 168 4-188 28-197 (205)
3 PF03641 Lysine_decarbox: Poss 100.0 8.4E-38 1.8E-42 245.3 15.5 132 35-183 1-133 (133)
4 TIGR00725 conserved hypothetic 100.0 1.9E-35 4.2E-40 238.6 16.8 146 4-183 12-158 (159)
5 TIGR00732 dprA DNA protecting 98.9 3.9E-08 8.4E-13 83.4 15.1 141 11-182 63-219 (220)
6 PF02481 DNA_processg_A: DNA r 98.1 4.7E-05 1E-09 64.2 12.0 128 11-159 63-206 (212)
7 PRK10736 hypothetical protein; 97.4 0.0065 1.4E-07 55.5 14.9 144 11-185 126-285 (374)
8 COG0758 Smf Predicted Rossmann 96.1 0.033 7.1E-07 50.5 8.6 133 6-159 123-272 (350)
9 PF12694 MoCo_carrier: Putativ 92.6 1.6 3.5E-05 34.8 9.4 95 26-141 1-98 (145)
10 PF05014 Nuc_deoxyrib_tr: Nucl 92.0 0.3 6.5E-06 36.5 4.6 44 81-142 51-98 (113)
11 PRK10565 putative carbohydrate 87.3 3.9 8.4E-05 38.9 9.0 36 100-143 321-356 (508)
12 COG1597 LCB5 Sphingosine kinas 78.4 4.7 0.0001 35.6 5.4 46 10-55 46-91 (301)
13 PF13528 Glyco_trans_1_3: Glyc 78.1 43 0.00093 28.7 11.7 64 101-185 252-316 (318)
14 PF06908 DUF1273: Protein of u 72.6 47 0.001 27.2 9.4 97 3-107 19-137 (177)
15 PF04101 Glyco_tran_28_C: Glyc 71.7 3.3 7.1E-05 32.5 2.4 26 101-140 74-99 (167)
16 KOG3614 Ca2+/Mg2+-permeable ca 69.8 46 0.00099 35.4 10.5 54 102-163 271-325 (1381)
17 PF11071 DUF2872: Protein of u 66.5 26 0.00057 27.7 6.3 74 82-184 63-137 (141)
18 PF06258 Mito_fiss_Elm1: Mitoc 61.9 1.2E+02 0.0025 27.0 10.8 51 100-163 229-279 (311)
19 PRK13608 diacylglycerol glucos 61.9 44 0.00095 30.1 8.0 63 101-188 275-337 (391)
20 PRK13609 diacylglycerol glucos 61.4 58 0.0013 28.8 8.6 64 100-188 274-337 (380)
21 COG0707 MurG UDP-N-acetylgluco 56.1 83 0.0018 28.6 8.7 85 76-189 237-324 (357)
22 TIGR03646 YtoQ_fam YtoQ family 54.8 51 0.0011 26.1 6.1 117 36-184 15-140 (144)
23 PRK02645 ppnK inorganic polyph 54.5 21 0.00046 31.6 4.5 50 101-160 59-117 (305)
24 KOG0832 Mitochondrial/chloropl 54.3 35 0.00075 29.5 5.5 45 6-50 91-136 (251)
25 cd00432 Ribosomal_L18_L5e Ribo 54.0 40 0.00087 24.8 5.3 39 8-46 56-102 (103)
26 PF00861 Ribosomal_L18p: Ribos 52.3 54 0.0012 25.0 5.9 41 8-48 70-118 (119)
27 PRK00861 putative lipid kinase 50.2 36 0.00078 29.6 5.3 44 11-55 46-89 (300)
28 KOG3974 Predicted sugar kinase 49.8 1.1E+02 0.0024 27.2 8.0 104 21-145 30-143 (306)
29 PRK13337 putative lipid kinase 49.3 44 0.00096 29.1 5.7 45 11-55 46-91 (304)
30 PF13607 Succ_CoA_lig: Succiny 47.5 1.3E+02 0.0028 23.4 7.5 36 99-141 54-89 (138)
31 TIGR01426 MGT glycosyltransfer 47.3 65 0.0014 28.7 6.6 65 101-188 293-358 (392)
32 CHL00139 rpl18 ribosomal prote 47.1 40 0.00086 25.5 4.4 38 10-47 62-107 (109)
33 PRK13054 lipid kinase; Reviewe 46.8 50 0.0011 28.8 5.6 45 11-55 45-92 (300)
34 TIGR03702 lip_kinase_YegS lipi 46.5 50 0.0011 28.6 5.6 45 11-55 41-88 (293)
35 CHL00200 trpA tryptophan synth 45.5 88 0.0019 27.2 6.9 40 112-159 75-119 (263)
36 PRK13055 putative lipid kinase 45.0 51 0.0011 29.3 5.5 45 11-55 48-93 (334)
37 KOG4175 Tryptophan synthase al 44.7 81 0.0018 27.0 6.2 33 112-151 78-110 (268)
38 COG3967 DltE Short-chain dehyd 44.5 27 0.00058 30.0 3.4 29 22-50 5-33 (245)
39 smart00046 DAGKc Diacylglycero 44.3 24 0.00053 26.6 2.9 34 103-140 52-85 (124)
40 PRK04155 chaperone protein Hch 43.3 25 0.00055 31.0 3.2 33 102-140 149-187 (287)
41 PF01256 Carb_kinase: Carbohyd 43.0 1.3E+02 0.0029 25.7 7.5 126 25-185 2-133 (242)
42 KOG1718 Dual specificity phosp 42.9 25 0.00054 29.1 2.8 32 116-155 124-155 (198)
43 PRK00726 murG undecaprenyldiph 42.3 1.7E+02 0.0036 25.5 8.3 68 100-189 253-324 (357)
44 PF01182 Glucosamine_iso: Gluc 41.7 87 0.0019 25.7 6.0 41 101-145 22-62 (199)
45 cd03785 GT1_MurG MurG is an N- 41.2 2.1E+02 0.0045 24.6 8.7 15 175-189 310-324 (350)
46 TIGR01133 murG undecaprenyldip 40.7 1.2E+02 0.0027 26.0 7.1 69 100-189 251-321 (348)
47 cd03147 GATase1_Ydr533c_like T 40.5 21 0.00046 30.3 2.2 38 103-140 97-134 (231)
48 PRK00025 lpxB lipid-A-disaccha 39.8 67 0.0015 28.2 5.4 17 173-189 325-341 (380)
49 cd03148 GATase1_EcHsp31_like T 39.0 25 0.00054 29.9 2.4 15 102-116 98-112 (232)
50 TIGR03590 PseG pseudaminic aci 38.8 55 0.0012 28.3 4.6 26 101-141 243-268 (279)
51 COG2185 Sbm Methylmalonyl-CoA 38.6 1E+02 0.0022 24.5 5.7 42 11-53 29-70 (143)
52 cd01171 YXKO-related B.subtili 36.9 1.5E+02 0.0033 24.8 6.9 36 101-144 79-114 (254)
53 cd06259 YdcF-like YdcF-like. Y 36.3 1.5E+02 0.0032 22.5 6.3 10 102-111 36-45 (150)
54 PF11834 DUF3354: Domain of un 36.0 78 0.0017 22.0 4.1 33 101-143 19-51 (69)
55 PLN02591 tryptophan synthase 36.0 1.6E+02 0.0034 25.5 6.9 40 112-159 62-106 (250)
56 TIGR01364 serC_1 phosphoserine 35.9 77 0.0017 28.3 5.2 44 7-50 38-84 (349)
57 PF04230 PS_pyruv_trans: Polys 35.7 78 0.0017 25.5 4.9 39 100-141 64-107 (286)
58 KOG1584 Sulfotransferase [Gene 35.3 24 0.00052 31.5 1.7 66 106-195 150-221 (297)
59 PF00106 adh_short: short chai 34.5 60 0.0013 24.6 3.8 30 24-53 2-31 (167)
60 COG3613 Nucleoside 2-deoxyribo 34.3 2E+02 0.0042 23.7 6.8 47 101-157 70-124 (172)
61 cd07025 Peptidase_S66 LD-Carbo 34.1 1.2E+02 0.0025 26.4 5.9 63 81-157 47-109 (282)
62 COG0148 Eno Enolase [Carbohydr 34.1 1.2E+02 0.0026 28.4 6.0 59 100-163 328-386 (423)
63 KOG3349 Predicted glycosyltran 33.8 84 0.0018 25.6 4.5 25 103-140 83-108 (170)
64 PF03492 Methyltransf_7: SAM d 33.6 39 0.00085 30.3 2.9 43 143-185 198-242 (334)
65 PRK05854 short chain dehydroge 33.5 60 0.0013 28.2 4.0 32 22-53 14-45 (313)
66 COG3660 Predicted nucleoside-d 33.3 88 0.0019 27.9 4.9 50 101-163 246-296 (329)
67 PRK08569 rpl18p 50S ribosomal 33.1 1E+02 0.0023 25.8 5.1 41 7-47 78-128 (193)
68 cd00411 Asparaginase Asparagin 33.0 68 0.0015 28.6 4.3 35 100-141 79-113 (323)
69 PRK11096 ansB L-asparaginase I 33.0 72 0.0016 28.9 4.5 36 98-140 99-134 (347)
70 TIGR02153 gatD_arch glutamyl-t 33.0 1.1E+02 0.0023 28.5 5.7 49 100-154 140-193 (404)
71 PF01965 DJ-1_PfpI: DJ-1/PfpI 32.6 56 0.0012 25.1 3.3 36 103-141 40-79 (147)
72 PRK11914 diacylglycerol kinase 32.6 93 0.002 27.0 5.1 45 10-55 52-96 (306)
73 PRK07313 phosphopantothenoylcy 32.2 68 0.0015 26.2 3.9 85 100-188 78-179 (182)
74 cd01170 THZ_kinase 4-methyl-5- 31.2 3.2E+02 0.007 23.0 8.9 30 17-47 3-32 (242)
75 COG0028 IlvB Thiamine pyrophos 31.1 1.6E+02 0.0034 28.5 6.7 20 171-190 502-521 (550)
76 TIGR00060 L18_bact ribosomal p 31.0 1.6E+02 0.0034 22.5 5.4 38 10-47 67-112 (114)
77 PF00290 Trp_syntA: Tryptophan 30.5 1E+02 0.0022 26.8 4.9 32 112-150 70-101 (259)
78 PRK11780 isoprenoid biosynthes 30.4 73 0.0016 26.8 3.9 13 101-114 87-99 (217)
79 PRK13059 putative lipid kinase 29.7 54 0.0012 28.5 3.1 31 101-139 58-88 (295)
80 KOG1322 GDP-mannose pyrophosph 29.5 97 0.0021 28.4 4.6 66 101-186 10-76 (371)
81 cd03786 GT1_UDP-GlcNAc_2-Epime 29.3 2E+02 0.0044 24.8 6.7 61 100-190 278-338 (363)
82 COG0063 Predicted sugar kinase 29.3 4E+02 0.0086 23.5 8.9 101 21-143 32-138 (284)
83 PRK07102 short chain dehydroge 29.1 72 0.0016 26.1 3.6 30 24-53 3-32 (243)
84 PF00483 NTP_transferase: Nucl 29.1 83 0.0018 25.8 4.0 62 104-186 3-68 (248)
85 cd06424 UGGPase UGGPase cataly 29.0 1.7E+02 0.0036 26.3 6.1 11 102-112 2-12 (315)
86 KOG2683 Sirtuin 4 and related 29.0 80 0.0017 27.6 3.8 38 98-142 245-282 (305)
87 TIGR00421 ubiX_pad polyprenyl 28.9 3.2E+02 0.0069 22.2 7.5 78 100-185 76-165 (181)
88 TIGR00196 yjeF_cterm yjeF C-te 28.6 3.7E+02 0.0079 22.8 8.6 35 101-143 94-128 (272)
89 cd03139 GATase1_PfpI_2 Type 1 28.5 2.1E+02 0.0045 22.3 6.1 36 101-141 64-102 (183)
90 PF13278 DUF4066: Putative ami 28.3 1.2E+02 0.0025 23.6 4.5 45 155-206 106-153 (166)
91 PF03501 S10_plectin: Plectin/ 28.2 1E+02 0.0022 22.9 3.8 44 147-191 39-82 (95)
92 PTZ00378 hypothetical protein; 28.2 96 0.0021 29.8 4.6 26 100-125 397-422 (518)
93 PRK07677 short chain dehydroge 27.1 96 0.0021 25.5 4.1 30 24-53 3-32 (252)
94 PLN02668 indole-3-acetate carb 27.0 75 0.0016 29.4 3.6 41 145-185 255-298 (386)
95 PRK15454 ethanol dehydrogenase 26.9 3.2E+02 0.007 25.0 7.8 36 11-46 37-77 (395)
96 cd08189 Fe-ADH5 Iron-containin 26.9 2.4E+02 0.0053 25.3 6.9 35 12-46 15-54 (374)
97 TIGR01832 kduD 2-deoxy-D-gluco 26.9 96 0.0021 25.3 4.0 32 22-53 5-36 (248)
98 PRK04183 glutamyl-tRNA(Gln) am 26.7 1.6E+02 0.0035 27.5 5.8 48 100-154 153-205 (419)
99 PF00781 DAGK_cat: Diacylglyce 26.7 1.4E+02 0.003 22.3 4.5 45 11-55 42-90 (130)
100 PRK00696 sucC succinyl-CoA syn 26.6 4.3E+02 0.0092 23.9 8.5 72 100-186 311-384 (388)
101 PF00627 UBA: UBA/TS-N domain; 26.6 22 0.00048 21.1 0.0 31 152-183 6-37 (37)
102 COG1454 EutG Alcohol dehydroge 26.5 3.8E+02 0.0082 24.7 8.1 35 12-46 18-57 (377)
103 COG1819 Glycosyl transferases, 26.3 5.1E+02 0.011 23.7 11.7 90 25-148 240-333 (406)
104 PRK06029 3-octaprenyl-4-hydrox 26.3 1.3E+02 0.0028 24.8 4.5 79 100-185 79-168 (185)
105 PF00113 Enolase_C: Enolase, C 26.2 68 0.0015 28.5 3.1 26 100-125 201-226 (295)
106 PF00890 FAD_binding_2: FAD bi 26.2 58 0.0013 29.3 2.7 28 24-53 2-29 (417)
107 cd06313 PBP1_ABC_sugar_binding 26.1 3.2E+02 0.0069 22.6 7.1 33 100-141 56-88 (272)
108 cd08186 Fe-ADH8 Iron-containin 26.0 3.8E+02 0.0081 24.2 8.0 20 100-121 85-104 (383)
109 PRK11914 diacylglycerol kinase 25.9 61 0.0013 28.2 2.7 29 101-139 66-94 (306)
110 COG0159 TrpA Tryptophan syntha 25.8 3.1E+02 0.0066 24.1 7.0 41 112-159 77-122 (265)
111 cd03133 GATase1_ES1 Type 1 glu 25.7 1.2E+02 0.0027 25.4 4.5 12 101-113 84-95 (213)
112 PLN02605 monogalactosyldiacylg 25.7 89 0.0019 27.9 3.8 65 100-189 283-347 (382)
113 TIGR00215 lpxB lipid-A-disacch 25.6 1.7E+02 0.0038 26.3 5.7 17 174-190 332-348 (385)
114 COG2242 CobL Precorrin-6B meth 25.6 2E+02 0.0044 23.9 5.6 48 101-160 104-153 (187)
115 COG2515 Acd 1-aminocyclopropan 25.4 2.1E+02 0.0046 25.8 6.0 47 7-53 49-96 (323)
116 KOG3344 40s ribosomal protein 25.4 1E+02 0.0023 24.5 3.6 44 147-191 41-84 (150)
117 TIGR03702 lip_kinase_YegS lipi 25.3 75 0.0016 27.5 3.2 33 103-140 55-87 (293)
118 PRK06180 short chain dehydroge 25.1 1E+02 0.0022 25.9 3.9 31 23-53 5-35 (277)
119 PRK08813 threonine dehydratase 24.7 2.2E+02 0.0047 25.9 6.1 51 5-55 161-213 (349)
120 PRK09461 ansA cytoplasmic aspa 24.7 1.3E+02 0.0028 27.0 4.6 50 99-154 81-135 (335)
121 cd08176 LPO Lactadehyde:propan 24.6 2.7E+02 0.0058 25.1 6.7 35 12-46 17-56 (377)
122 PRK13057 putative lipid kinase 24.6 68 0.0015 27.6 2.8 30 101-140 52-81 (287)
123 cd00897 UGPase_euk Eukaryotic 24.2 2.8E+02 0.006 24.7 6.6 12 101-112 4-15 (300)
124 PRK05593 rplR 50S ribosomal pr 24.2 2.4E+02 0.0052 21.5 5.4 37 11-47 71-115 (117)
125 cd08193 HVD 5-hydroxyvalerate 24.2 3.9E+02 0.0084 24.0 7.7 35 12-46 15-54 (376)
126 PRK13059 putative lipid kinase 23.9 1.8E+02 0.0039 25.2 5.4 42 14-55 48-90 (295)
127 PRK15138 aldehyde reductase; P 23.8 2.5E+02 0.0053 25.6 6.4 31 12-42 20-54 (387)
128 PRK13111 trpA tryptophan synth 23.7 3.3E+02 0.0072 23.5 6.8 42 112-160 72-118 (258)
129 PRK00861 putative lipid kinase 23.5 79 0.0017 27.4 3.0 29 101-139 59-87 (300)
130 PF00162 PGK: Phosphoglycerate 23.5 44 0.00096 30.8 1.4 27 5-31 326-353 (384)
131 PRK10494 hypothetical protein; 23.4 1.7E+02 0.0036 25.3 4.9 10 101-110 80-89 (259)
132 PRK13057 putative lipid kinase 23.4 1.7E+02 0.0037 25.1 5.1 43 11-55 40-82 (287)
133 PRK08217 fabG 3-ketoacyl-(acyl 23.2 1.2E+02 0.0027 24.5 4.0 32 22-53 5-36 (253)
134 KOG2968 Predicted esterase of 23.1 62 0.0014 33.4 2.4 33 12-44 829-862 (1158)
135 COG4671 Predicted glycosyl tra 23.0 3.2E+02 0.0069 25.4 6.7 79 81-189 284-365 (400)
136 TIGR02638 lactal_redase lactal 22.6 4E+02 0.0088 24.0 7.5 35 12-46 18-57 (379)
137 TIGR00035 asp_race aspartate r 22.2 4.6E+02 0.0099 21.7 7.3 79 104-188 4-98 (229)
138 PRK11253 ldcA L,D-carboxypepti 22.1 1.3E+02 0.0029 26.6 4.1 63 81-152 50-112 (305)
139 cd07225 Pat_PNPLA6_PNPLA7 Pata 21.9 1E+02 0.0022 27.3 3.4 43 11-53 4-51 (306)
140 cd04180 UGPase_euk_like Eukary 21.8 1.5E+02 0.0033 25.6 4.4 11 102-112 2-12 (266)
141 PRK12361 hypothetical protein; 21.8 1.8E+02 0.004 27.6 5.3 44 11-55 286-329 (547)
142 KOG1350 F0F1-type ATP synthase 21.8 90 0.0019 28.7 3.0 32 19-50 189-224 (521)
143 PF02016 Peptidase_S66: LD-car 21.8 98 0.0021 27.0 3.2 66 82-161 48-114 (284)
144 PF05159 Capsule_synth: Capsul 21.8 90 0.002 26.5 3.0 31 101-147 201-231 (269)
145 PRK13054 lipid kinase; Reviewe 21.8 1.1E+02 0.0024 26.6 3.5 33 101-139 58-90 (300)
146 cd07062 Peptidase_S66_mccF_lik 21.6 2.6E+02 0.0056 24.6 5.9 68 81-162 51-119 (308)
147 PRK09291 short chain dehydroge 21.3 1.4E+02 0.003 24.4 4.0 30 24-53 4-33 (257)
148 cd07035 TPP_PYR_POX_like Pyrim 21.1 1.7E+02 0.0036 22.4 4.2 73 101-188 60-139 (155)
149 PF14947 HTH_45: Winged helix- 21.0 1E+02 0.0022 21.3 2.6 40 145-186 33-72 (77)
150 cd03784 GT1_Gtf_like This fami 20.9 5.8E+02 0.013 22.4 13.8 66 101-188 306-371 (401)
151 TIGR00519 asnASE_I L-asparagin 20.7 2.3E+02 0.0049 25.5 5.4 35 100-141 78-112 (336)
152 COG2081 Predicted flavoprotein 20.7 74 0.0016 29.7 2.3 27 23-51 5-31 (408)
153 TIGR03405 Phn_Fe-ADH phosphona 20.6 2.1E+02 0.0046 25.6 5.2 19 100-120 81-99 (355)
154 cd08182 HEPD Hydroxyethylphosp 20.6 4.5E+02 0.0097 23.5 7.3 21 100-122 78-98 (367)
155 PLN02830 UDP-sugar pyrophospho 20.5 2E+02 0.0044 28.3 5.3 12 101-112 129-140 (615)
156 PRK06443 chorismate mutase; Va 20.5 1.6E+02 0.0035 24.3 4.0 40 7-50 91-131 (177)
157 PRK12481 2-deoxy-D-gluconate 3 20.4 1.5E+02 0.0033 24.5 4.0 31 22-52 8-38 (251)
158 cd03169 GATase1_PfpI_1 Type 1 20.3 2.9E+02 0.0063 21.7 5.5 34 101-141 78-116 (180)
159 COG3961 Pyruvate decarboxylase 20.3 92 0.002 30.1 2.8 64 112-186 444-520 (557)
160 COG1597 LCB5 Sphingosine kinas 20.2 1.2E+02 0.0026 26.7 3.4 20 103-122 61-80 (301)
161 PRK07062 short chain dehydroge 20.2 1.6E+02 0.0034 24.4 4.1 32 22-53 8-39 (265)
162 PF01704 UDPGP: UTP--glucose-1 20.1 2.7E+02 0.0058 26.0 5.9 12 101-112 57-68 (420)
163 TIGR00147 lipid kinase, YegS/R 20.0 2.7E+02 0.0059 23.8 5.6 39 17-55 52-91 (293)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=4.7e-47 Score=311.33 Aligned_cols=165 Identities=24% Similarity=0.389 Sum_probs=146.0
Q ss_pred CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413 4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82 (209)
Q Consensus 4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~ 82 (209)
.+|.|.+ |++||++||++|+.+|||||.+|+|+|+|+||+++||+|+||+|..-..+ +.+|++++ ..+.+++|+
T Consensus 13 ~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~---~~~~~~~~--~~i~~~~~~ 87 (178)
T TIGR00730 13 GNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSG---EVVHQNLT--ELIEVNGMH 87 (178)
T ss_pred CCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhh---hccCCCCC--ceEEECCHH
Confidence 4666665 89999999999988888888899999999999999999999998532111 23599987 456779999
Q ss_pred HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA 162 (209)
Q Consensus 83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~ 162 (209)
+||.+|++.| ||||+||||+|||+|++++|+|.|++.+ +||++++|.+|||+++++|+++++++||++
T Consensus 88 ~Rk~~m~~~s--------da~I~lPGG~GTL~El~e~~~~~qlg~~----~kPiil~n~~g~~~~l~~~l~~~~~~gfi~ 155 (178)
T TIGR00730 88 ERKAMMAELA--------DAFIAMPGGFGTLEELFEVLTWAQLGIH----QKPIILFNVNGHFDGLVEWLKYSIQEGFIS 155 (178)
T ss_pred HHHHHHHHhC--------CEEEEcCCCcchHHHHHHHHHHHHcCCC----CCCEEEECCcchHHHHHHHHHHHHHCCCCC
Confidence 9999999987 9999999999999999999999999864 799999999999999999999999999999
Q ss_pred hhcccccEEEeCCHHHHHHHHHhh
Q 028413 163 KDEVASLWKICDSNSEALSYLAEF 186 (209)
Q Consensus 163 ~~~~~~~i~~~~~~ee~~~~l~~~ 186 (209)
+++ .+.+.+++|++|++++|++|
T Consensus 156 ~~~-~~~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 156 ESH-LKLIHVVSRPDELIEQVQNY 178 (178)
T ss_pred HHH-cCcEEEcCCHHHHHHHHHhC
Confidence 975 47899999999999999764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=272.53 Aligned_cols=168 Identities=32% Similarity=0.466 Sum_probs=146.2
Q ss_pred CcH-HHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413 4 DHP-HYLQSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82 (209)
Q Consensus 4 ~~p-~y~~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~ 82 (209)
.++ .|+.|++||++||++| .+|||||++|+|||+|+||+++||.|+||+|....... ++|++++ .++++.+|+
T Consensus 28 ~~~~~~~~a~~lg~~la~~g-~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~~e---~~~~~~~--~l~~~~~~~ 101 (205)
T COG1611 28 EPEEYYELARELGRELAKRG-LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHEQE---PPNYEVI--ELITGMDFA 101 (205)
T ss_pred CCHHHHHHHHHHHHHHHhCC-cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchhhc---cCccccc--eeeecCCHH
Confidence 444 6777999999999996 89999999999999999999999999999996543211 2355554 567789999
Q ss_pred HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHH-hHHHcCCC
Q 028413 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLG-DCEDWGTV 161 (209)
Q Consensus 83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~-~~~~~gfi 161 (209)
+||..|+++| ||||++|||+||++|+|++|+|.|++.+. ..+|+++++.++||+++.++++ +++.++++
T Consensus 102 ~Rk~~~~~~a--------da~V~~pGG~GTleEl~e~lt~~q~g~~~--l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i 171 (205)
T COG1611 102 ERKRAMVRSA--------DAFIVLPGGFGTLEELFEALTLGQTGVHA--LTPPPLILNGNGFWEPLLEFLDPHLIVEGLI 171 (205)
T ss_pred HHHHHHHHhC--------CEEEEeCCCcchHHHHHHHHHHhhCCccc--CCCCcEEecchHHHHHHHHHhCHHHHHhhcC
Confidence 9999999998 99999999999999999999999998753 2577778898999999999999 89999999
Q ss_pred ChhcccccEEEeCCHHHHHHHHHhhhc
Q 028413 162 AKDEVASLWKICDSNSEALSYLAEFYD 188 (209)
Q Consensus 162 ~~~~~~~~i~~~~~~ee~~~~l~~~~~ 188 (209)
+++. .+++.+++|++++++.+.+++.
T Consensus 172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~ 197 (205)
T COG1611 172 SEAD-RELLIVVDDAEEAIDAILKYLP 197 (205)
T ss_pred Chhh-hhheeeecCHHHHHHHHHHhcc
Confidence 9864 5888999999999999999854
No 3
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=8.4e-38 Score=245.32 Aligned_cols=132 Identities=39% Similarity=0.604 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCcc-cccccCCCCCCCccceeeccchHHHHHHhHhhhhhcCCCCccEEEEeCCCcccH
Q 028413 35 MDAVTKGAMQAGKPVGGFKVGKEAG-EWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTL 113 (209)
Q Consensus 35 M~ava~ga~~~gG~viGi~~~~~~~-~~~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTL 113 (209)
|+|+|+||+++||+|+||+|..... + +.+|++++ .++++++|++||..|++.| ||||+||||+|||
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~---~~~~~~~~--~~~~~~~~~~Rk~~m~~~s--------da~I~lPGG~GTl 67 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFE---EPPNPYVT--ELIIVDDMFERKEIMIESS--------DAFIALPGGIGTL 67 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTT---TTCCTTSS--EEEEESSHHHHHHHHHHHE--------SEEEEES-SHHHH
T ss_pred CcHHHHHHHHcCCeEEEEecCcccccc---ccCCcccC--ceeEeCChHHHHHHHHHhC--------CEEEEEecCCchH
Confidence 9999999999999999999864322 2 24599987 5677899999999999997 9999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHHHHHH
Q 028413 114 DEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYL 183 (209)
Q Consensus 114 eEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l 183 (209)
+|+|++|+|+|++.+ .++||||+|.+|||+++++++++++++||+++++. +.+.+++|++|++++|
T Consensus 68 ~El~~~~~~~~l~~~---~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~-~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 68 DELFEALTLMQLGRH---NKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDL-DLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHTTSS---TS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHH-CCEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHhhccc---cCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHC-CeEEEeCCHHHHHhhC
Confidence 999999999999875 34599999999999999999999999999999864 7999999999999875
No 4
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=1.9e-35 Score=238.60 Aligned_cols=146 Identities=26% Similarity=0.308 Sum_probs=121.0
Q ss_pred CcHHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchH
Q 028413 4 DHPHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFS 82 (209)
Q Consensus 4 ~~p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~ 82 (209)
.+|.|.+ |++||++||++|+ .|++||+.|+|+++++||+++||+|+||+|.... ..|++++ ..++...++
T Consensus 12 ~~~~~~~~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~gg~viGVlp~~l~------~~~~~~~--~~i~~~~~~ 82 (159)
T TIGR00725 12 KSEELYEIAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAGGLVVGILPDEDF------AGNPYLT--IKVKTGMNF 82 (159)
T ss_pred CChHHHHHHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCCCeEEEECChhhc------cCCCCce--EEEECCCcc
Confidence 4677776 8999999999975 6677999999999999999999999999985321 2477775 445555558
Q ss_pred HHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCC
Q 028413 83 ARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVA 162 (209)
Q Consensus 83 ~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~ 162 (209)
+||++|++.| ||||++|||+|||+|+|++|++ +||++++|.+|||+++++++ ..++++.
T Consensus 83 ~Rk~~m~~~s--------da~IvlpGG~GTL~E~~~a~~~----------~kpv~~l~~~g~~~~~l~~~---~~~~~~~ 141 (159)
T TIGR00725 83 ARNFILVRSA--------DVVVSVGGGYGTAIEILGAYAL----------GGPVVVLRGTGGWTDRLSQV---LIEGVYL 141 (159)
T ss_pred hHHHHHHHHC--------CEEEEcCCchhHHHHHHHHHHc----------CCCEEEEECCCcchHHHHHH---Hhccccc
Confidence 8999999997 9999999999999999999883 58999999999999998865 4445544
Q ss_pred hhcccccEEEeCCHHHHHHHH
Q 028413 163 KDEVASLWKICDSNSEALSYL 183 (209)
Q Consensus 163 ~~~~~~~i~~~~~~ee~~~~l 183 (209)
++ .+.+++|++|+++.+
T Consensus 142 ~~----~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 142 DE----RVIVEITPAEAVKLA 158 (159)
T ss_pred cc----eeEecCCHHHHHHhh
Confidence 42 478999999999864
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=98.94 E-value=3.9e-08 Score=83.42 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---cccc-------ccc---CCCCCCCcccee
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEW-------TAS---NFHPYLPLETYL 76 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~~-------~~~---~~n~~l~~e~~i 76 (209)
|+++++.|+++ ++.|++|+..|++.++.++|+++||.+|+|++. +. |.+. ... ...+|.+... .
T Consensus 63 a~~l~~~l~~~-g~~IVSG~A~GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~-~ 140 (220)
T TIGR00732 63 TRKLAEELAKN-GVTIVSGLALGIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTK-P 140 (220)
T ss_pred HHHHHHHHHhC-CCEEEcCchhhHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCC-C
Confidence 79999999999 568889999999999999999999999999863 21 1100 000 0112222100 1
Q ss_pred eccchHHHHHHhHhhhhhcCCCCccEEEEeCCC--cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHh
Q 028413 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154 (209)
Q Consensus 77 ~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG--~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~ 154 (209)
....|..|++++..+| |++|++-.+ .||+.+.-.++.+ .|||.++- ...+++..+-...
T Consensus 141 ~~~~f~~RNriia~ls--------~~vivve~~~~sGtl~ta~~A~~~----------gr~v~~~p-g~~~~~~~~G~~~ 201 (220)
T TIGR00732 141 IKYNFPKRNRIISGLS--------RAVLVVEAPLKSGALITARYALEQ----------GREVFAYP-GDLNSPESDGCHK 201 (220)
T ss_pred CcccHHHHHHHHHHhc--------CEEEEEECCCCCchHHHHHHHHHh----------CCcEEEEc-CCCCCccchHHHH
Confidence 1235689999999887 999999997 7999887666543 58999884 2355555555566
Q ss_pred HHHcCCCChhcccccEEEeCCHHHHHHH
Q 028413 155 CEDWGTVAKDEVASLWKICDSNSEALSY 182 (209)
Q Consensus 155 ~~~~gfi~~~~~~~~i~~~~~~ee~~~~ 182 (209)
++++|. ..+.+++++++.
T Consensus 202 Li~~GA----------~~i~~~~d~~~~ 219 (220)
T TIGR00732 202 LIEQGA----------ALITSAKDILET 219 (220)
T ss_pred HHHCCC----------EEECCHHHHHHh
Confidence 777662 135677777653
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=98.13 E-value=4.7e-05 Score=64.23 Aligned_cols=128 Identities=21% Similarity=0.176 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---cccc-------ccc---CCCCCCCcccee
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGEW-------TAS---NFHPYLPLETYL 76 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~~-------~~~---~~n~~l~~e~~i 76 (209)
|+++++.|+++ +..|++|+-.|+-.++.++|+++||.+|.|++. ++ |.+. .+. -..+|.+. ...
T Consensus 63 a~~l~~~l~~~-g~~vvSGlA~GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~~~i~~~~glliSe~~p~-~~~ 140 (212)
T PF02481_consen 63 AKKLARELAKA-GIVVVSGLAKGIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELAERILDEGGLLISEYPPG-TKP 140 (212)
T ss_dssp HHHHHHHHHHH-T-EEEE---TTHHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHHHHHHHTT-EEEE-S-TT----
T ss_pred HHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHHHHHHhcCcEEEeCCCCC-CCc
Confidence 79999999999 568999999999999999999999999999862 21 1110 000 01122221 112
Q ss_pred eccchHHHHHHhHhhhhhcCCCCccEEEEeC--CCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHh
Q 028413 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALP--GGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154 (209)
Q Consensus 77 ~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lP--GG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~ 154 (209)
....|.+|++++.-+| |+.|++- =..||+.-+-.++.+ .|||.++. ...+++..+.-..
T Consensus 141 ~~~~f~~RNRiiaaLs--------~~~vvvea~~~sGt~~ta~~A~~~----------gr~v~~vp-~~~~~~~~~G~~~ 201 (212)
T PF02481_consen 141 SRWRFPERNRIIAALS--------DAVVVVEAGEKSGTLHTARFALEQ----------GRPVFAVP-GPIDDPNSEGNNE 201 (212)
T ss_dssp -TTHHHHHHHHHHHH---------S-EEE----TT-THHHHHHHHHHH----------T--EEE-----TT-GGGHHHHH
T ss_pred ccccChHHHHHHHHhC--------CeEEEEecCCCChHHHHHHHHHHc----------CCeEEEEe-CCCCCcccHHHHH
Confidence 2346789999999987 8888875 456788776655543 47998874 3466666666667
Q ss_pred HHHcC
Q 028413 155 CEDWG 159 (209)
Q Consensus 155 ~~~~g 159 (209)
++++|
T Consensus 202 Li~~G 206 (212)
T PF02481_consen 202 LIKEG 206 (212)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 77776
No 7
>PRK10736 hypothetical protein; Provisional
Probab=97.42 E-value=0.0065 Score=55.50 Aligned_cols=144 Identities=16% Similarity=0.046 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEec-CCC---ccc-------cccc---CCCCCCCcccee
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKV-GKE---AGE-------WTAS---NFHPYLPLETYL 76 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~-~~~---~~~-------~~~~---~~n~~l~~e~~i 76 (209)
++++++.||++ +.+|+.|+--|+=.++.++|+++||.+|+|+. ++. |.+ ...+ -..+|.+. .-.
T Consensus 126 ~~~l~~~la~~-g~~IVSGlA~GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~~I~~~~G~liSEyp~~-~~p 203 (374)
T PRK10736 126 GRLFCEELAKN-GLTITSGLARGIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAESIIEQGGALVSEFPLD-TPP 203 (374)
T ss_pred HHHHHHHHHHC-CCEEECcchhhHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHHHHHhcCCEEEECCCCC-CCC
Confidence 79999999999 56888999999999999999999999999974 111 111 0000 00111110 001
Q ss_pred eccchHHHHHHhHhhhhhcCCCCccEEEEeCC--CcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHh
Q 028413 77 TCRFFSARKHGLIDCAVRNDSCDRTAVVALPG--GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGD 154 (209)
Q Consensus 77 ~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPG--G~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~ 154 (209)
...+|..|++++.-+| +++|++-- ..|||.=.-.++.. .|+|..+- ...+++.-+-..+
T Consensus 204 ~~~~Fp~RNRIIagLS--------~~viVvEA~~kSGsliTA~~Al~~----------gR~VfavP-G~i~~~~s~G~n~ 264 (374)
T PRK10736 204 LAANFPRRNRIISGLS--------KGVLVVEAALRSGSLVTARCALEQ----------GRDVFALP-GPIGNPGSEGPHW 264 (374)
T ss_pred ChhhhhHhhhHHHHhC--------CeEEEEEeCCCCchHHHHHHHHHh----------CCeEEEEc-CCCCCccchhHHH
Confidence 1246889999999887 88888743 45676554434332 58988883 3355665556666
Q ss_pred HHHcCCCChhcccccEEEeCCHHHHHHHHHh
Q 028413 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAE 185 (209)
Q Consensus 155 ~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~ 185 (209)
++++|. ..+.+++++++.+..
T Consensus 265 LI~~GA----------~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 265 LIKQGA----------YLVTSPEDILENLQF 285 (374)
T ss_pred HHHCCC----------EEeCCHHHHHHHhhh
Confidence 776652 256788888888743
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=96.08 E-value=0.033 Score=50.52 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=84.6
Q ss_pred HHHHH--HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC-CC---ccc-------cccc--CCCCCC
Q 028413 6 PHYLQ--SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG-KE---AGE-------WTAS--NFHPYL 70 (209)
Q Consensus 6 p~y~~--A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~-~~---~~~-------~~~~--~~n~~l 70 (209)
..|-. ++.|++.|+++ +..|++|+-.|+=.++.++|++++|++|+|+.. .+ |.+ ...+ -.++|.
T Consensus 123 S~~g~~~~~~~a~~L~~~-g~~IvSGlA~GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEyp 201 (350)
T COG0758 123 SKYGLDYTRDLAEYLAQN-GITIVSGLARGIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYP 201 (350)
T ss_pred CHhHHHHHHHHHHHHHhC-CeEEEecCcceecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecC
Confidence 34543 79999999999 568889999999999999999999999999742 11 110 0000 112333
Q ss_pred CccceeeccchHHHHHHhHhhhhhcCCCCccEEEEeCCC--cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHH
Q 028413 71 PLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGG--VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL 148 (209)
Q Consensus 71 ~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG--~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l 148 (209)
+.. -....+|..|+++..-+| +++|+.-.+ .|+|.=.-.++.. .+.|..+- ....++.
T Consensus 202 p~~-~p~~~~Fp~RNRiIagLS--------~gvlVvEA~~kSGSLiTA~~Aleq----------gR~VfavP-g~~~~~~ 261 (350)
T COG0758 202 PDT-EPNKGNFPRRNRLIAGLS--------DGVLVVEAGLKSGSLITAKYALEQ----------GRDVFAVP-GSIDNPR 261 (350)
T ss_pred CCC-CcccccchHHHHHHHHhc--------CceEEEecCcccccHHHHHHHHHc----------CCeeEEcC-CCccccc
Confidence 311 122247899999998887 998888665 5777655544443 35565553 2233443
Q ss_pred HHHHHhHHHcC
Q 028413 149 LDFLGDCEDWG 159 (209)
Q Consensus 149 ~~~l~~~~~~g 159 (209)
-+-...++++|
T Consensus 262 s~G~~~LI~~G 272 (350)
T COG0758 262 SEGCNKLIKEG 272 (350)
T ss_pred ccchHHHHHcc
Confidence 33334456665
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=92.57 E-value=1.6 Score=34.84 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=49.0
Q ss_pred EEccCCccHHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchHHHHHHhHhhhhhcCCCCccEEEE
Q 028413 26 TWSGAGPGLMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVA 105 (209)
Q Consensus 26 V~~GG~~GlM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~ 105 (209)
|++||-.|+=.|+-+.|+++|-..-|-.|.-...|... -+..|-= ......+...|-+..++-| |+-++
T Consensus 1 IiSGGQTGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~-ip~~Y~L--~E~~~~~Y~~RT~~NV~Ds--------DgTlI 69 (145)
T PF12694_consen 1 IISGGQTGVDRAALDAAIAHGIPHGGWCPKGRRAEDGP-IPARYPL--QETPSSGYRQRTEWNVRDS--------DGTLI 69 (145)
T ss_dssp EE----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS---TTS----EE-SS--HHHHHHHHHHTS--------SEEEE
T ss_pred CccCccccHHHHHHHHHHHcCCCccCcCCCCcccccCc-CCccccc--eecCCCCHHHHHHhhhhhc--------CeEEE
Confidence 67999999999999999999987778877321112110 1122311 1233456789999999876 99888
Q ss_pred eCCCc---ccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 106 LPGGV---GTLDEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 106 lPGG~---GTLeEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
|-=|- || ++...++. + +.||+.+++.
T Consensus 70 ~~~g~l~GGt--~lT~~~a~----~----~~KP~l~i~~ 98 (145)
T PF12694_consen 70 FTRGELTGGT--ALTVEFAR----K----HGKPCLHIDL 98 (145)
T ss_dssp EESSS--HHH--HHHHHHHH----H----TT--EEEETS
T ss_pred EecCCCCcHH--HHHHHHHH----H----hCCCEEEEec
Confidence 76443 33 33322222 2 3699988864
No 10
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=92.01 E-value=0.3 Score=36.52 Aligned_cols=44 Identities=27% Similarity=0.212 Sum_probs=33.7
Q ss_pred hHHHHHHhHhhhhhcCCCCccEEEEeCCC----cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCC
Q 028413 81 FSARKHGLIDCAVRNDSCDRTAVVALPGG----VGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142 (209)
Q Consensus 81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG----~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~ 142 (209)
..+|....++.| |++|+.-.+ .||.-|+..+..+ .|||+++..+
T Consensus 51 i~~~d~~~i~~~--------D~via~l~~~~~d~Gt~~ElG~A~al----------gkpv~~~~~d 98 (113)
T PF05014_consen 51 IFERDLEGIREC--------DIVIANLDGFRPDSGTAFELGYAYAL----------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHS--------SEEEEEECSSS--HHHHHHHHHHHHT----------TSEEEEEECC
T ss_pred HHHHHHHHHHHC--------CEEEEECCCCCCCCcHHHHHHHHHHC----------CCEEEEEEcC
Confidence 355666666665 999998877 9999999877654 5899999753
No 11
>PRK10565 putative carbohydrate kinase; Provisional
Probab=87.34 E-value=3.9 Score=38.92 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=22.0
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCc
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g 143 (209)
+|++++=|| .|+-++..+++.. +.. .++|+ +++.++
T Consensus 321 ~~a~viGpG-lg~~~~~~~~~~~--~~~----~~~P~-VLDAda 356 (508)
T PRK10565 321 ADVVVIGPG-LGQQEWGKKALQK--VEN----FRKPM-LWDADA 356 (508)
T ss_pred CCEEEEeCC-CCCCHHHHHHHHH--HHh----cCCCE-EEEchH
Confidence 389888776 7886665444422 211 35786 677666
No 12
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=78.44 E-value=4.7 Score=35.63 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC
Q 028413 10 QSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 55 (209)
Q Consensus 10 ~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~ 55 (209)
+|.++.+.++..+.-+|+.+|+-|....++.|....+...+||+|.
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~LgilP~ 91 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPPLGILPG 91 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCceEEecC
Confidence 5788889988888889999999999999999999999888999984
No 13
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=78.12 E-value=43 Score=28.67 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=38.0
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEE-eCCHHHH
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI-CDSNSEA 179 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~-~~~~ee~ 179 (209)
|++|.- ||.+|+.|. +++ .||++++-..++++....- +.+.+.|.... +.. .-+++.+
T Consensus 252 d~vIs~-~G~~t~~Ea---~~~----------g~P~l~ip~~~~~EQ~~~a-~~l~~~G~~~~------~~~~~~~~~~l 310 (318)
T PF13528_consen 252 DLVISK-GGYTTISEA---LAL----------GKPALVIPRPGQDEQEYNA-RKLEELGLGIV------LSQEDLTPERL 310 (318)
T ss_pred CEEEEC-CCHHHHHHH---HHc----------CCCEEEEeCCCCchHHHHH-HHHHHCCCeEE------cccccCCHHHH
Confidence 777665 889998885 333 5899999766666665431 33444443211 111 1267777
Q ss_pred HHHHHh
Q 028413 180 LSYLAE 185 (209)
Q Consensus 180 ~~~l~~ 185 (209)
.++|++
T Consensus 311 ~~~l~~ 316 (318)
T PF13528_consen 311 AEFLER 316 (318)
T ss_pred HHHHhc
Confidence 777755
No 14
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=72.55 E-value=47 Score=27.21 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCcHHHHH-HHHHH---HHHHHcCCCEEEccCCccHHHHHHHHHHhCCC-----cEEEEecCCCcc-ccccc--------
Q 028413 3 PDHPHYLQ-SFELG---GEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-----PVGGFKVGKEAG-EWTAS-------- 64 (209)
Q Consensus 3 ~~~p~y~~-A~~LG---~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG-----~viGi~~~~~~~-~~~~~-------- 64 (209)
.+||.+.. -..|- ..+-+.|-.-+++||.-|+=--++..|++... +.+-++|-.... .|...
T Consensus 19 ~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~~i 98 (177)
T PF06908_consen 19 EKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQSI 98 (177)
T ss_dssp S--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHHHH
Confidence 45676664 22222 34445688999999999988888888888653 344455632211 11100
Q ss_pred --CCC--CCCCccceeeccchHHHHHHhHhhhhhcCCCCccEEEEeC
Q 028413 65 --NFH--PYLPLETYLTCRFFSARKHGLIDCAVRNDSCDRTAVVALP 107 (209)
Q Consensus 65 --~~n--~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lP 107 (209)
.++ ..++++.+.....|..|++.|++.| |++|++=
T Consensus 99 l~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhs--------d~~iavy 137 (177)
T PF06908_consen 99 LEQADFVVVVSERPYYSPGQLQKRNRFMVDHS--------DGLIAVY 137 (177)
T ss_dssp HHH-SEEEESSSSB---HHHHHHHHHHHHHHS--------SEEEEE-
T ss_pred HHhCCEEEEccCCCCCCHHHHHHHhHHHHhCC--------CeEEEEE
Confidence 000 0010000111134679999999987 9888873
No 15
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=71.74 E-value=3.3 Score=32.51 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=16.2
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEe
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln 140 (209)
| +|+--||.||+.|+. .. .+|.|++-
T Consensus 74 D-lvIs~aG~~Ti~E~l---~~----------g~P~I~ip 99 (167)
T PF04101_consen 74 D-LVISHAGAGTIAEAL---AL----------GKPAIVIP 99 (167)
T ss_dssp S-EEEECS-CHHHHHHH---HC----------T--EEEE-
T ss_pred C-EEEeCCCccHHHHHH---Hc----------CCCeeccC
Confidence 8 677788899988854 22 58988874
No 16
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.80 E-value=46 Score=35.43 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=38.6
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhH-HHcCCCCh
Q 028413 102 AVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC-EDWGTVAK 163 (209)
Q Consensus 102 a~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~-~~~gfi~~ 163 (209)
.++++-||.+|+.=+.+..+. .++.|+|++...|=-.++++++-+. .+.|+++.
T Consensus 271 vc~v~eGg~nti~~I~~~v~~--------~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~ 325 (1381)
T KOG3614|consen 271 VCLVLEGGPNTLAIILDYVTD--------KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSD 325 (1381)
T ss_pred EEEEecCCchHHHHHHHHhcc--------CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccH
Confidence 688999999998776655432 1578999997777788888876553 44555443
No 17
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=66.53 E-value=26 Score=27.67 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=43.9
Q ss_pred HHHHHHhHhhhhhcCCCCccEEEEeCCC-cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCC
Q 028413 82 SARKHGLIDCAVRNDSCDRTAVVALPGG-VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGT 160 (209)
Q Consensus 82 ~~Rk~~m~~~~~~~~~~~sDa~I~lPGG-~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gf 160 (209)
.-|-+.+++.| |.+|+.-|- +=-.+--|.+=.-.-+ .||+|++.....--||.+ .
T Consensus 63 ~iRT~~li~~a--------DvVVvrFGekYKQWNaAfDAg~a~Al-------gKplI~lh~~~~~HpLKE----v----- 118 (141)
T PF11071_consen 63 AIRTRTLIEKA--------DVVVVRFGEKYKQWNAAFDAGYAAAL-------GKPLITLHPEELHHPLKE----V----- 118 (141)
T ss_pred HHHHHHHHhhC--------CEEEEEechHHHHHHHHhhHHHHHHc-------CCCeEEecchhccccHHH----H-----
Confidence 46777788876 999998773 1112223333222222 589999976543333322 1
Q ss_pred CChhcccccEEEeCCHHHHHHHHH
Q 028413 161 VAKDEVASLWKICDSNSEALSYLA 184 (209)
Q Consensus 161 i~~~~~~~~i~~~~~~ee~~~~l~ 184 (209)
+. ....++.+|+.+++.|+
T Consensus 119 -da----~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 119 -DA----AALAVAETPEQVVEILR 137 (141)
T ss_pred -hH----hhHhhhCCHHHHHHHHH
Confidence 11 12347999999999874
No 18
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=61.90 E-value=1.2e+02 Score=27.04 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=34.8
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCCh
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAK 163 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~ 163 (209)
||+||+-+-.+-=+.| +++- .||+.++...+--..+..+++.|.+.|.+++
T Consensus 229 ad~i~VT~DSvSMvsE---A~~t----------G~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~ 279 (311)
T PF06258_consen 229 ADAIVVTEDSVSMVSE---AAAT----------GKPVYVLPLPGRSGRFRRFHQSLEERGAVRP 279 (311)
T ss_pred CCEEEEcCccHHHHHH---HHHc----------CCCEEEecCCCcchHHHHHHHHHHHCCCEEE
Confidence 3999997665544444 4432 4899999876634455566777888888775
No 19
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=61.89 E-value=44 Score=30.13 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=35.1
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHHH
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~ 180 (209)
|++|.-|||. |+.| +++. .+|+|+.++..- .+..+. .-+.+.|+ -..++|++++.
T Consensus 275 Dl~I~k~gg~-tl~E---A~a~----------G~PvI~~~~~pg-qe~~N~-~~~~~~G~---------g~~~~~~~~l~ 329 (391)
T PRK13608 275 QLMITKPGGI-TISE---GLAR----------CIPMIFLNPAPG-QELENA-LYFEEKGF---------GKIADTPEEAI 329 (391)
T ss_pred hEEEeCCchH-HHHH---HHHh----------CCCEEECCCCCC-cchhHH-HHHHhCCc---------EEEeCCHHHHH
Confidence 9999878775 7555 4444 489999974221 111110 01122221 23467888887
Q ss_pred HHHHhhhc
Q 028413 181 SYLAEFYD 188 (209)
Q Consensus 181 ~~l~~~~~ 188 (209)
+.+.+.+.
T Consensus 330 ~~i~~ll~ 337 (391)
T PRK13608 330 KIVASLTN 337 (391)
T ss_pred HHHHHHhc
Confidence 77777643
No 20
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=61.37 E-value=58 Score=28.77 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=35.1
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHH
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~ 179 (209)
||++|.-+|| .|+.| +++. .+|+|+.+..+.... ...+.+.+.|+ ...+.|++++
T Consensus 274 aD~~v~~~gg-~t~~E---A~a~----------g~PvI~~~~~~g~~~--~n~~~~~~~G~---------~~~~~~~~~l 328 (380)
T PRK13609 274 TSCMITKPGG-ITLSE---AAAL----------GVPVILYKPVPGQEK--ENAMYFERKGA---------AVVIRDDEEV 328 (380)
T ss_pred ccEEEeCCCc-hHHHH---HHHh----------CCCEEECCCCCCcch--HHHHHHHhCCc---------EEEECCHHHH
Confidence 3998876665 46555 4444 479988764222111 11111222232 2345788888
Q ss_pred HHHHHhhhc
Q 028413 180 LSYLAEFYD 188 (209)
Q Consensus 180 ~~~l~~~~~ 188 (209)
.+.|.+.+.
T Consensus 329 ~~~i~~ll~ 337 (380)
T PRK13609 329 FAKTEALLQ 337 (380)
T ss_pred HHHHHHHHC
Confidence 888877654
No 21
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=56.12 E-value=83 Score=28.58 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=46.4
Q ss_pred eeccchHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccch--HHHHHHH
Q 028413 76 LTCRFFSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYK--KLLDFLG 153 (209)
Q Consensus 76 i~~~~~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~--~l~~~l~ 153 (209)
+.+..|.......+..| |.+|.=+| ..|+.|+..+ .+|.|++-. .++. +-..--+
T Consensus 237 ~~v~~f~~dm~~~~~~A--------DLvIsRaG-a~Ti~E~~a~-------------g~P~IliP~-p~~~~~~Q~~NA~ 293 (357)
T COG0707 237 VRVLPFIDDMAALLAAA--------DLVISRAG-ALTIAELLAL-------------GVPAILVPY-PPGADGHQEYNAK 293 (357)
T ss_pred EEEeeHHhhHHHHHHhc--------cEEEeCCc-ccHHHHHHHh-------------CCCEEEeCC-CCCccchHHHHHH
Confidence 33455655555555555 88777665 4799997522 479999964 3451 1111112
Q ss_pred hHHHcCCCChhcccccEEEeC-CHHHHHHHHHhhhcC
Q 028413 154 DCEDWGTVAKDEVASLWKICD-SNSEALSYLAEFYDL 189 (209)
Q Consensus 154 ~~~~~gfi~~~~~~~~i~~~~-~~ee~~~~l~~~~~~ 189 (209)
.+.+.|.- ..+.-.+ +++++.+.|.+..+.
T Consensus 294 ~l~~~gaa------~~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 294 FLEKAGAA------LVIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred HHHhCCCE------EEeccccCCHHHHHHHHHHHhcC
Confidence 23444421 1111122 477888888887543
No 22
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=54.80 E-value=51 Score=26.11 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCcEEEEecCCC--cc-----cccccCCCCCCCccceeeccch-HHHHHHhHhhhhhcCCCCccEEEEeC
Q 028413 36 DAVTKGAMQAGKPVGGFKVGKE--AG-----EWTASNFHPYLPLETYLTCRFF-SARKHGLIDCAVRNDSCDRTAVVALP 107 (209)
Q Consensus 36 ~ava~ga~~~gG~viGi~~~~~--~~-----~~~~~~~n~~l~~e~~i~~~~~-~~Rk~~m~~~~~~~~~~~sDa~I~lP 107 (209)
+.+.+||.+.+-.|.-..|.-. .. +..-..+|++-.+. ....+ .-|-+.+++.| |.+|+.-
T Consensus 15 e~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~---k~a~iNaiRT~~li~~a--------DvvVvrF 83 (144)
T TIGR03646 15 EEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDD---AAASINNIRTRKLIEKA--------DVVIALF 83 (144)
T ss_pred HHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCccccccc---cccchhhHHHHHHHhhC--------CEEEEEe
Confidence 5667788877766655544211 10 00001123332111 11222 45777788876 9999987
Q ss_pred CC-cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHHHHHHH
Q 028413 108 GG-VGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLA 184 (209)
Q Consensus 108 GG-~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~ 184 (209)
|- +=-.+--|.+=...-+ .||+|++.....--||.+ . +. ....++.+|+.+++.|+
T Consensus 84 GekYKQWNaAfDAg~aaAl-------gKplI~lh~~~~~HpLKE----v------da----aA~avaetp~Qvv~iL~ 140 (144)
T TIGR03646 84 GEKYKQWNAAFDAGYAAAL-------GKPLIILRPEELIHPLKE----V------DN----KAQAVVETPEQAIETLK 140 (144)
T ss_pred chHHHHHHHHhhHHHHHHc-------CCCeEEecchhccccHHH----H------hH----HHHHHhcCHHHHHHHHH
Confidence 73 1112223333222222 589999976543333322 1 11 12247899999999874
No 23
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.50 E-value=21 Score=31.61 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=32.5
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCC---ccchHH------HHHHHhHHHcCC
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD---SFYKKL------LDFLGDCEDWGT 160 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~---g~w~~l------~~~l~~~~~~gf 160 (209)
|.+|++ ||=||+-+.+..+.- ..+|++-+|.. ||.... .+.++.+.+..+
T Consensus 59 d~vi~~-GGDGT~l~~~~~~~~---------~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~~g~~ 117 (305)
T PRK02645 59 DLAIVL-GGDGTVLAAARHLAP---------HDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQEDRY 117 (305)
T ss_pred CEEEEE-CCcHHHHHHHHHhcc---------CCCCEEEEecCCcceEecCchhhcchHHHHHHHHcCCc
Confidence 777776 999999887655421 36899999862 577653 345555554333
No 24
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=54.33 E-value=35 Score=29.51 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=40.3
Q ss_pred HHHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEE
Q 028413 6 PHYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVG 50 (209)
Q Consensus 6 p~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~vi 50 (209)
..|.. |..+-.-+|.+|+...+-|-..|-|.-+.+.|.+++|..+
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCcee
Confidence 35666 8999999999999899999999999999999999999654
No 25
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=54.01 E-value=40 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcC----CCEEE--ccCCc--cHHHHHHHHHHhCC
Q 028413 8 YLQSFELGGEIARLL----DCTTW--SGAGP--GLMDAVTKGAMQAG 46 (209)
Q Consensus 8 y~~A~~LG~~La~~g----~~~V~--~GG~~--GlM~ava~ga~~~g 46 (209)
+..|+.+|+.||++. ..-|+ -||.. |-+.|+++|+.+.|
T Consensus 56 ~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 56 VEAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 344788888888773 22232 36664 99999999999987
No 26
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=52.31 E-value=54 Score=24.97 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHc----CCCEEEc--cCC--ccHHHHHHHHHHhCCCc
Q 028413 8 YLQSFELGGEIARL----LDCTTWS--GAG--PGLMDAVTKGAMQAGKP 48 (209)
Q Consensus 8 y~~A~~LG~~La~~----g~~~V~~--GG~--~GlM~ava~ga~~~gG~ 48 (209)
+..|+.+|..||++ |...|+- +|. .|-+.|+++|+.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 44467777777665 5444443 443 79999999999998843
No 27
>PRK00861 putative lipid kinase; Reviewed
Probab=50.25 E-value=36 Score=29.57 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~ 55 (209)
|.++.+..++.+..+|+..|+-|-.-.+..|.... +..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGDGTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhcC-CCcEEEEcC
Confidence 66777777776666788899999999999999765 467899984
No 28
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=49.82 E-value=1.1e+02 Score=27.15 Aligned_cols=104 Identities=22% Similarity=0.224 Sum_probs=57.8
Q ss_pred cCCCEEEccCC--ccHHHHHHHHHHhCCCcEEEEecCCCcccc-----cccCCCCCCCccceeeccchHHHHHHhHhhhh
Q 028413 21 LLDCTTWSGAG--PGLMDAVTKGAMQAGKPVGGFKVGKEAGEW-----TASNFHPYLPLETYLTCRFFSARKHGLIDCAV 93 (209)
Q Consensus 21 ~g~~~V~~GG~--~GlM~ava~ga~~~gG~viGi~~~~~~~~~-----~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~ 93 (209)
.|-..|+||.. .|.---+|..|+..|...+=|.-+.+.... ++.-.||+++. .+--++-..++++-
T Consensus 30 ~GrvgViGGc~eYTGAPYFaa~sa~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~------~~av~~i~k~L~Rl- 102 (306)
T KOG3974|consen 30 SGRVGVIGGCLEYTGAPYFAAISALRVGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQ------ENAVDIIEKLLQRL- 102 (306)
T ss_pred ccceEEEcccccccCccHHHHHHHHHhccceeeeeechhHHHHHhhcCCceeecccccC------CchHhHHHHHHhhe-
Confidence 34445555543 799999999999999876655432221110 01112333321 11123333455443
Q ss_pred hcCCCCccEEEEeCC---CcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccc
Q 028413 94 RNDSCDRTAVVALPG---GVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145 (209)
Q Consensus 94 ~~~~~~sDa~I~lPG---G~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w 145 (209)
+|+|+=|| --+++.++..++.+.. + ..+|+|+= .+|.|
T Consensus 103 -------havVIGPGLGRdp~~~k~i~~iley~~----~--~dvP~VID-aDGL~ 143 (306)
T KOG3974|consen 103 -------HAVVIGPGLGRDPAILKEIAKILEYLR----G--KDVPLVID-ADGLW 143 (306)
T ss_pred -------eEEEECCCCCCCHHHHHHHHHHHHHHh----c--CCCcEEEc-CCceE
Confidence 88888776 2345777777776642 2 36898665 47887
No 29
>PRK13337 putative lipid kinase; Reviewed
Probab=49.26 E-value=44 Score=29.13 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCC-cEEEEecC
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG-~viGi~~~ 55 (209)
|.++.+.+++.+..+|+..|+-|-.-.+..|.+..+- ..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 6677777777666678888888999899998876643 47899983
No 30
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=47.45 E-value=1.3e+02 Score=23.45 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=22.6
Q ss_pred CccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 99 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 99 ~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
+..++++.-=|++--.+|++++.-.. .+||||++..
T Consensus 54 ~t~~I~ly~E~~~d~~~f~~~~~~a~-------~~KPVv~lk~ 89 (138)
T PF13607_consen 54 DTRVIVLYLEGIGDGRRFLEAARRAA-------RRKPVVVLKA 89 (138)
T ss_dssp S--EEEEEES--S-HHHHHHHHHHHC-------CCS-EEEEE-
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHh-------cCCCEEEEeC
Confidence 35788888889999999988876532 2599999975
No 31
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=47.26 E-value=65 Score=28.72 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=34.9
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEE-eCCHHHH
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI-CDSNSEA 179 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~-~~~~ee~ 179 (209)
|++ +..||.||+.|. +.. .+|+|++-. ...... ..+.+.+.|.- ..+.. .-+++++
T Consensus 293 ~~~-I~hgG~~t~~Ea---l~~----------G~P~v~~p~-~~dq~~--~a~~l~~~g~g------~~l~~~~~~~~~l 349 (392)
T TIGR01426 293 DAF-ITHGGMNSTMEA---LFN----------GVPMVAVPQ-GADQPM--TARRIAELGLG------RHLPPEEVTAEKL 349 (392)
T ss_pred CEE-EECCCchHHHHH---HHh----------CCCEEecCC-cccHHH--HHHHHHHCCCE------EEeccccCCHHHH
Confidence 755 578899998774 322 589998853 222221 22334443421 11111 2356777
Q ss_pred HHHHHhhhc
Q 028413 180 LSYLAEFYD 188 (209)
Q Consensus 180 ~~~l~~~~~ 188 (209)
.+.+.+.+.
T Consensus 350 ~~ai~~~l~ 358 (392)
T TIGR01426 350 REAVLAVLS 358 (392)
T ss_pred HHHHHHHhc
Confidence 777777654
No 32
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=47.14 E-value=40 Score=25.53 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHc----CCC-EEEc-cCC--ccHHHHHHHHHHhCCC
Q 028413 10 QSFELGGEIARL----LDC-TTWS-GAG--PGLMDAVTKGAMQAGK 47 (209)
Q Consensus 10 ~A~~LG~~La~~----g~~-~V~~-GG~--~GlM~ava~ga~~~gG 47 (209)
.|+.+|..||++ |.. +++- ||. .|-+.|+++||.++|-
T Consensus 62 aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 62 ASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 467778777765 433 3342 443 6999999999999883
No 33
>PRK13054 lipid kinase; Reviewed
Probab=46.84 E-value=50 Score=28.76 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCC-C--cEEEEecC
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-K--PVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~g-G--~viGi~~~ 55 (209)
|.++.+..++.+.-.|+..|+-|-.-.++.|..... + ..+||+|.
T Consensus 45 a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 45 AARYVEEALALGVATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 566666666655567777888887777788877542 2 36899983
No 34
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=46.50 E-value=50 Score=28.65 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCC---cEEEEecC
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGK---PVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG---~viGi~~~ 55 (209)
|.++.+.+++.+...|+-.|+-|-.-.+..|....+- ..+||+|.
T Consensus 41 a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 6778887777765677888889999999999986542 25899983
No 35
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.45 E-value=88 Score=27.18 Aligned_cols=40 Identities=23% Similarity=0.623 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHH-----HHHhHHHcC
Q 028413 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWG 159 (209)
Q Consensus 112 TLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~-----~l~~~~~~g 159 (209)
|++.+|+.+.-.. . ..+.|++++. ||+++.+ +++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r--~---~~~~p~vlm~---Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN--G---EIKAPIVIFT---YYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh--c---CCCCCEEEEe---cccHHHHhCHHHHHHHHHHcC
Confidence 6788877765532 1 1468998884 8887766 566666555
No 36
>PRK13055 putative lipid kinase; Reviewed
Probab=45.02 E-value=51 Score=29.29 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCC-CcEEEEecC
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~g-G~viGi~~~ 55 (209)
|.++.+..+..+.-+|+-.||-|-+-.++.|....+ ...+||+|.
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 556666666665557778888999999999988654 356899984
No 37
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.69 E-value=81 Score=26.98 Aligned_cols=33 Identities=24% Similarity=0.690 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHH
Q 028413 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF 151 (209)
Q Consensus 112 TLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~ 151 (209)
||+-+++++....-. | -..||+|+ |||+|++..
T Consensus 78 tl~~i~emvk~ar~~--g--vt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQ--G--VTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhccc--C--cccceeee---ecccHHHhh
Confidence 899998887765321 2 25899999 499999865
No 38
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=44.51 E-value=27 Score=30.00 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCEEEccCCccHHHHHHHHHHhCCCcEE
Q 028413 22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVG 50 (209)
Q Consensus 22 g~~~V~~GG~~GlM~ava~ga~~~gG~vi 50 (209)
|++++.|||..|+=-+.++-..+.|-.||
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VI 33 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVI 33 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEE
Confidence 67889999999999999999999998874
No 39
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=44.28 E-value=24 Score=26.64 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=21.8
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEe
Q 028413 103 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140 (209)
Q Consensus 103 ~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln 140 (209)
+|+.-||=||+.|+...+.-... ..+..|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~----~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKREL----PLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhccc----ccCCCcEEEeC
Confidence 67789999999999766632111 00115788883
No 40
>PRK04155 chaperone protein HchA; Provisional
Probab=43.33 E-value=25 Score=30.97 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEEeCCCcccHHHH------HHHHHHHHhhhhcCCCCccEEEEe
Q 028413 102 AVVALPGGVGTLDEM------FEILALIQLERIGSELPVPFLVMN 140 (209)
Q Consensus 102 a~I~lPGG~GTLeEl------~e~~t~~ql~~~~~~~~kPiilln 140 (209)
..|++|||.|.+..| .+++.+.. ...|||+.+-
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~------~~~K~VaAIC 187 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWAL------DNDRFIITLC 187 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHH------HcCCEEEEEC
Confidence 456899999987655 33444322 1478887664
No 41
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=42.97 E-value=1.3e+02 Score=25.66 Aligned_cols=126 Identities=22% Similarity=0.197 Sum_probs=58.3
Q ss_pred EEEcc--CCccHHHHHHHHHHhCC-CcEEEEecCCCcccccccCCCCCCCcccee-eccchHHHH--HHhHhhhhhcCCC
Q 028413 25 TTWSG--AGPGLMDAVTKGAMQAG-KPVGGFKVGKEAGEWTASNFHPYLPLETYL-TCRFFSARK--HGLIDCAVRNDSC 98 (209)
Q Consensus 25 ~V~~G--G~~GlM~ava~ga~~~g-G~viGi~~~~~~~~~~~~~~n~~l~~e~~i-~~~~~~~Rk--~~m~~~~~~~~~~ 98 (209)
+|++| +++|.---++++|...| |.|.=+.|....... ..+.+ |..+ ... ..+.. ....+..
T Consensus 2 lvigGS~~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~-----~~~~P-e~m~~~~~-~~~~~~~~~~~~~~------ 68 (242)
T PF01256_consen 2 LVIGGSEGYPGAAILAARAALRSGAGLVTLATPESIAPVI-----ASYSP-EAMVSPLP-SDEDVEILELLEKA------ 68 (242)
T ss_dssp EEEE-BTSSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHH-----HHHTT-TSEEEETT-HCCHHHHHHHHCH-------
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHH-----HhCCc-eeEEeccc-chhhhhhHhhhccC------
Confidence 45555 45666666778888888 566555543211100 11122 2222 212 10111 1122333
Q ss_pred CccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHH
Q 028413 99 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178 (209)
Q Consensus 99 ~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee 178 (209)
|++++=|| +|+-++-.+++... -. ..+| ++++-++.| .+.+.. .+ ....++++..+-|
T Consensus 69 --~av~iGPG-lg~~~~~~~~~~~~--~~----~~~p-~VlDADaL~--------~l~~~~--~~--~~~~~IlTPH~gE 126 (242)
T PF01256_consen 69 --DAVVIGPG-LGRDEETEELLEEL--LE----SDKP-LVLDADALN--------LLAENP--KK--RNAPVILTPHPGE 126 (242)
T ss_dssp --SEEEE-TT--SSSHHHHHHHHHH--HH----HCST-EEEECHHHH--------CHHHCC--CC--SSSCEEEE-BHHH
T ss_pred --CEEEeecC-CCCchhhHHHHHHH--Hh----hcce-EEEehHHHH--------HHHhcc--cc--CCCCEEECCCHHH
Confidence 88888876 56766655444332 11 1578 577754422 122211 11 2345678888888
Q ss_pred HHHHHHh
Q 028413 179 ALSYLAE 185 (209)
Q Consensus 179 ~~~~l~~ 185 (209)
.-+.+..
T Consensus 127 ~~rL~~~ 133 (242)
T PF01256_consen 127 FARLLGK 133 (242)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 8765544
No 42
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=42.88 E-value=25 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhH
Q 028413 116 MFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDC 155 (209)
Q Consensus 116 l~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~ 155 (209)
|.|++.|.+- .+|||==| .|||..|++.=+++
T Consensus 124 LreAy~~vKa-------~RpiIRPN-~GFw~QLi~YE~qL 155 (198)
T KOG1718|consen 124 LREAYHWVKA-------RRPIIRPN-VGFWRQLIDYEQQL 155 (198)
T ss_pred HHHHHHHHHh-------hCceeCCC-ccHHHHHHHHHHHh
Confidence 4456666543 57998888 48999999865554
No 43
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=42.32 E-value=1.7e+02 Score=25.45 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCc--cchHHHHHHHhHHHcCCCChhcccccEEEeCC--
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS--FYKKLLDFLGDCEDWGTVAKDEVASLWKICDS-- 175 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g--~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~-- 175 (209)
||++|. ++|.+|+-| +++. .+|+|.....+ ..+... .-+.+.+.| . -.+.-.++
T Consensus 253 ~d~~i~-~~g~~~~~E---a~~~----------g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~-g~~~~~~~~~ 310 (357)
T PRK00726 253 ADLVIC-RAGASTVAE---LAAA----------GLPAILVPLPHAADDHQTA-NARALVDAG------A-ALLIPQSDLT 310 (357)
T ss_pred CCEEEE-CCCHHHHHH---HHHh----------CCCEEEecCCCCCcCcHHH-HHHHHHHCC------C-EEEEEcccCC
Confidence 399885 556677555 4443 58999886421 111111 012223322 1 11112234
Q ss_pred HHHHHHHHHhhhcC
Q 028413 176 NSEALSYLAEFYDL 189 (209)
Q Consensus 176 ~ee~~~~l~~~~~~ 189 (209)
++++.+.|.+.+..
T Consensus 311 ~~~l~~~i~~ll~~ 324 (357)
T PRK00726 311 PEKLAEKLLELLSD 324 (357)
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888877553
No 44
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=41.69 E-value=87 Score=25.67 Aligned_cols=41 Identities=34% Similarity=0.372 Sum_probs=27.2
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccc
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFY 145 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w 145 (209)
.+.|+|+||. |...+++.|.-..-..+ .-..+.+++.+.+|
T Consensus 22 ~~~i~LsgGs-tp~~~y~~L~~~~~~~i---~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 22 RAVIALSGGS-TPKPLYQELAKLHKERI---DWSRVHFFNVDERV 62 (199)
T ss_dssp SEEEEE--SC-THHHHHHHHHHHHHTCS---CGGGEEEEESEEES
T ss_pred CEEEEEcCCH-HHHHHHHHHhhhccccC---ChhHeEEEeCcccc
Confidence 7999999995 77788888876431111 23568888888887
No 45
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=41.19 E-value=2.1e+02 Score=24.56 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=11.9
Q ss_pred CHHHHHHHHHhhhcC
Q 028413 175 SNSEALSYLAEFYDL 189 (209)
Q Consensus 175 ~~ee~~~~l~~~~~~ 189 (209)
|++++.+.|.+++..
T Consensus 310 ~~~~l~~~i~~ll~~ 324 (350)
T cd03785 310 TPERLAAALLELLSD 324 (350)
T ss_pred CHHHHHHHHHHHhcC
Confidence 789999988887653
No 46
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=40.73 E-value=1.2e+02 Score=25.96 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=34.7
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeC--CHH
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICD--SNS 177 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~--~~e 177 (209)
||++|. ++|..|+-| +++. .+|+|..+..+.-..... ....+.++ .. ..+.-.. +++
T Consensus 251 ad~~v~-~~g~~~l~E---a~~~----------g~Pvv~~~~~~~~~~~~~-~~~~i~~~-----~~-G~~~~~~~~~~~ 309 (348)
T TIGR01133 251 ADLVIS-RAGASTVAE---LAAA----------GVPAILIPYPYAADDQYY-NAKFLEDL-----GA-GLVIRQKELLPE 309 (348)
T ss_pred CCEEEE-CCChhHHHH---HHHc----------CCCEEEeeCCCCccchhh-HHHHHHHC-----CC-EEEEecccCCHH
Confidence 399886 555557555 4433 589998865321111000 00112211 11 1111222 489
Q ss_pred HHHHHHHhhhcC
Q 028413 178 EALSYLAEFYDL 189 (209)
Q Consensus 178 e~~~~l~~~~~~ 189 (209)
++.+.|.+.+..
T Consensus 310 ~l~~~i~~ll~~ 321 (348)
T TIGR01133 310 KLLEALLKLLLD 321 (348)
T ss_pred HHHHHHHHHHcC
Confidence 998888887653
No 47
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=40.53 E-value=21 Score=30.31 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=19.4
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEe
Q 028413 103 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140 (209)
Q Consensus 103 ~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln 140 (209)
.|++|||.|.+..+..--...++-++-....|||..+-
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIC 134 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVC 134 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 45789999976644322111111111111468987764
No 48
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=39.80 E-value=67 Score=28.24 Aligned_cols=17 Identities=6% Similarity=-0.117 Sum_probs=12.2
Q ss_pred eCCHHHHHHHHHhhhcC
Q 028413 173 CDSNSEALSYLAEFYDL 189 (209)
Q Consensus 173 ~~~~ee~~~~l~~~~~~ 189 (209)
..|++++.+.+.+.+..
T Consensus 325 ~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 325 EATPEKLARALLPLLAD 341 (380)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 35688888888887553
No 49
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=39.00 E-value=25 Score=29.89 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=11.3
Q ss_pred EEEEeCCCcccHHHH
Q 028413 102 AVVALPGGVGTLDEM 116 (209)
Q Consensus 102 a~I~lPGG~GTLeEl 116 (209)
..|++|||.|++..|
T Consensus 98 Dav~iPGG~g~~~dl 112 (232)
T cd03148 98 AAVFIPGGHGALIGI 112 (232)
T ss_pred eEEEECCCCCChhhc
Confidence 345899999997654
No 50
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=38.79 E-value=55 Score=28.26 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.8
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
|.+|. +|| +|+-|+. +. .+|.+++-.
T Consensus 243 Dl~Is-~~G-~T~~E~~---a~----------g~P~i~i~~ 268 (279)
T TIGR03590 243 DLAIG-AAG-STSWERC---CL----------GLPSLAICL 268 (279)
T ss_pred CEEEE-CCc-hHHHHHH---Hc----------CCCEEEEEe
Confidence 99988 666 8977753 33 579988854
No 51
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.65 E-value=1e+02 Score=24.55 Aligned_cols=42 Identities=12% Similarity=-0.034 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
|.=+.++|+..|..++++|...-- +.+++.|.+....+|||.
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEE
Confidence 566788999998888887776543 777777899999999996
No 52
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=36.94 E-value=1.5e+02 Score=24.76 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=20.1
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCcc
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF 144 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~ 144 (209)
|++++ .+|+|+-+.+..++.... . +++|+ ++|.++.
T Consensus 79 d~v~i-g~gl~~~~~~~~i~~~~~--~----~~~pv-VlDa~~~ 114 (254)
T cd01171 79 DAVVI-GPGLGRDEEAAEILEKAL--A----KDKPL-VLDADAL 114 (254)
T ss_pred CEEEE-ecCCCCCHHHHHHHHHHH--h----cCCCE-EEEcHHH
Confidence 77776 455888655444443321 1 25685 5776653
No 53
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=36.29 E-value=1.5e+02 Score=22.51 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=4.9
Q ss_pred EEEEeCCCcc
Q 028413 102 AVVALPGGVG 111 (209)
Q Consensus 102 a~I~lPGG~G 111 (209)
..|++.||.+
T Consensus 36 ~~ii~sGg~~ 45 (150)
T cd06259 36 PKLIVSGGQG 45 (150)
T ss_pred CEEEEcCCCC
Confidence 3445555544
No 54
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=35.98 E-value=78 Score=21.97 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=23.4
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCc
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g 143 (209)
--+|.|| +|++||..+.+. +++. .|--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~~-kfg~------~~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIASE-KFGF------SATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHHH-HhCC------CceEEEcCCC
Confidence 5789999 599999988765 5642 2555676554
No 55
>PLN02591 tryptophan synthase
Probab=35.96 E-value=1.6e+02 Score=25.47 Aligned_cols=40 Identities=25% Similarity=0.637 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHH-----HHHhHHHcC
Q 028413 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWG 159 (209)
Q Consensus 112 TLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~-----~l~~~~~~g 159 (209)
|++.+|+.+.-.. . ..++|++++. ||+++.+ +++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r--~---~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA--P---QLSCPIVLFT---YYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh--c---CCCCCEEEEe---cccHHHHhHHHHHHHHHHHcC
Confidence 7888888775432 1 1468998884 8887665 555555555
No 56
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=35.89 E-value=77 Score=28.35 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=27.5
Q ss_pred HHHHH-HHHHHHHHH-cC-CCEEEccCCccHHHHHHHHHHhCCCcEE
Q 028413 7 HYLQS-FELGGEIAR-LL-DCTTWSGAGPGLMDAVTKGAMQAGKPVG 50 (209)
Q Consensus 7 ~y~~A-~~LG~~La~-~g-~~~V~~GG~~GlM~ava~ga~~~gG~vi 50 (209)
.|+++ ..|.+.+.- .. ..+++.|++.+.|+++.......|.++.
T Consensus 38 ~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l 84 (349)
T TIGR01364 38 VANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVAD 84 (349)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEE
Confidence 45555 345554431 22 3455568899999999998876555443
No 57
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=35.72 E-value=78 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=20.5
Q ss_pred ccEEEEeCCC-----cccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 100 RTAVVALPGG-----VGTLDEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 100 sDa~I~lPGG-----~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
+|.+|+.+|| ..+....+..+.+..+-.. .+||+++++.
T Consensus 64 ~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~~~g~ 107 (286)
T PF04230_consen 64 ADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKK---LGKPVIILGQ 107 (286)
T ss_pred CCeEEEECCcccccCCCcchhhHHHHHHHHHHHh---cCCCeEEECc
Confidence 3777777775 2333322112222222221 4799999985
No 58
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=35.26 E-value=24 Score=31.48 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=43.9
Q ss_pred eCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEE------eCCHHHH
Q 028413 106 LPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKI------CDSNSEA 179 (209)
Q Consensus 106 lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~------~~~~ee~ 179 (209)
.-.+.||+||+|+..+- | .++++ -||+.++.+-+ +. .+ +.|.| -.+|...
T Consensus 150 ~~~~~~~~e~~fe~F~~------G------~~~~G--p~~dHVl~~W~-~~-----~~----~~VLFl~YEdmk~dp~~~ 205 (297)
T KOG1584|consen 150 TQPGPGTFEEFFESFCN------G------VVPYG--PWWDHVLGYWE-LE-----DP----KNVLFLKYEDMKADPKGE 205 (297)
T ss_pred cCCCCCcHHHHHHHHhC------C------cCCcC--ChHHHHHHHHH-hc-----CC----CceEEEEHHHhhhCHHHH
Confidence 34567889999998865 2 24555 59999998876 21 11 22222 2568889
Q ss_pred HHHHHhhhcCCCCCcc
Q 028413 180 LSYLAEFYDLSSIDKR 195 (209)
Q Consensus 180 ~~~l~~~~~~~~~~~~ 195 (209)
++.|.+|+-.+...+.
T Consensus 206 ikrlaeFLg~~~~~Ee 221 (297)
T KOG1584|consen 206 IKKLAEFLGCPFTKEE 221 (297)
T ss_pred HHHHHHHhCCCCCHHH
Confidence 9999999876665543
No 59
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=34.48 E-value=60 Score=24.65 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.2
Q ss_pred CEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 24 ~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
+++++||..|+=.++++...+.|+.++-+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEe
Confidence 367899999999999999999988665554
No 60
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=34.31 E-value=2e+02 Score=23.71 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=31.4
Q ss_pred cEEEEeCCC------cccHHHHHHHHHHHHhhhhcCCCCccEEEEeCC--ccchHHHHHHHhHHH
Q 028413 101 TAVVALPGG------VGTLDEMFEILALIQLERIGSELPVPFLVMNYD--SFYKKLLDFLGDCED 157 (209)
Q Consensus 101 Da~I~lPGG------~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~--g~w~~l~~~l~~~~~ 157 (209)
|++|+.-=+ .||.-|+-.++++ .||++.+..+ .|...+-.++.....
T Consensus 70 D~vla~ld~fr~~~DsGTa~E~GYa~Al----------gKPv~~~~~d~~~~~~r~~~~~~~~l~ 124 (172)
T COG3613 70 DIVLANLDPFRPDPDSGTAFELGYAIAL----------GKPVYAYRKDAANYASRLNAHLGEVLG 124 (172)
T ss_pred CEEEEecCCCCCCCCCcchHHHHHHHHc----------CCceEEEeecccchhhHHHHhHHHHhh
Confidence 999988655 7899999888765 5899888543 234444444433333
No 61
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=34.10 E-value=1.2e+02 Score=26.41 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=38.8
Q ss_pred hHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHH
Q 028413 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCED 157 (209)
Q Consensus 81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~ 157 (209)
-.+|-+-|.+.- ...+.|++++.-||.|+. ++..-+.|.++.. .|-++++ |+++-.+.-.+..
T Consensus 47 ~~~Ra~dL~~a~---~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~------~pK~~iG----ySDiTaL~~~l~~ 109 (282)
T cd07025 47 DEERAADLNAAF---ADPEIKAIWCARGGYGAN-RLLPYLDYDLIRA------NPKIFVG----YSDITALHLALYA 109 (282)
T ss_pred HHHHHHHHHHHh---hCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhh------CCeEEEE----ecHHHHHHHHHHH
Confidence 357777665532 123469999999999985 4555677877643 3445665 4555544433433
No 62
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=34.06 E-value=1.2e+02 Score=28.35 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=39.8
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCCh
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAK 163 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~ 163 (209)
++++++-|=-+|||.|.+++..+.+-. | -+|||--....-=|..++-|--....|+|+.
T Consensus 328 aNaiLIK~NQIGTLTEt~~ai~~A~~~--g---y~~viSHRSGETeD~tIAdLAVa~~agqIKT 386 (423)
T COG0148 328 ANAILIKPNQIGTLTETLEAINLAKDA--G---YTAVISHRSGETEDTTIADLAVATNAGQIKT 386 (423)
T ss_pred CceEEEechhcccHHHHHHHHHHHHHC--C---CeEEEecCCCCcccchHHHHHHHhCCCeeec
Confidence 499999999999999999999887653 3 2677665443334455554443445555543
No 63
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=33.82 E-value=84 Score=25.62 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=16.2
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEE-e
Q 028413 103 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM-N 140 (209)
Q Consensus 103 ~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiill-n 140 (209)
+|+--+|.||.-| ++.. .||.|++ |
T Consensus 83 lVIsHAGaGS~le---tL~l----------~KPlivVvN 108 (170)
T KOG3349|consen 83 LVISHAGAGSCLE---TLRL----------GKPLIVVVN 108 (170)
T ss_pred EEEecCCcchHHH---HHHc----------CCCEEEEeC
Confidence 4566789999544 4433 5896655 5
No 64
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=33.62 E-value=39 Score=30.31 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=31.2
Q ss_pred ccchHHHHHHHhHHHcCCCChhcccc--cEEEeCCHHHHHHHHHh
Q 028413 143 SFYKKLLDFLGDCEDWGTVAKDEVAS--LWKICDSNSEALSYLAE 185 (209)
Q Consensus 143 g~w~~l~~~l~~~~~~gfi~~~~~~~--~i~~~~~~ee~~~~l~~ 185 (209)
.+|+.+-+-+..|+.+|.|++++++. +-.++.+++|+.+.+++
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 46888888899999999999987654 23567889999888875
No 65
>PRK05854 short chain dehydrogenase; Provisional
Probab=33.50 E-value=60 Score=28.22 Aligned_cols=32 Identities=22% Similarity=0.052 Sum_probs=27.2
Q ss_pred CCCEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 22 g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
|...|+|||..|+-.++++...+.|-+|+.+.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 45788999999999999999998888877653
No 66
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=33.30 E-value=88 Score=27.91 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=33.5
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCcc-chHHHHHHHhHHHcCCCCh
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSF-YKKLLDFLGDCEDWGTVAK 163 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~-w~~l~~~l~~~~~~gfi~~ 163 (209)
|+||+---.+.-..| +++- .||+.++-.++| -..+.-+++++.+++..++
T Consensus 246 dyii~TaDSinM~sE---AasT----------gkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~ 296 (329)
T COG3660 246 DYIISTADSINMCSE---AAST----------GKPVFILEPPNFNSLKFRIFIEQLVEQKIARP 296 (329)
T ss_pred ceEEEecchhhhhHH---Hhcc----------CCCeEEEecCCcchHHHHHHHHHHHHhhhccc
Confidence 999997777666555 3322 589999987777 4444455677777665444
No 67
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=33.07 E-value=1e+02 Score=25.75 Aligned_cols=41 Identities=20% Similarity=0.055 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHc----CCCEEE--ccCCc----cHHHHHHHHHHhCCC
Q 028413 7 HYLQSFELGGEIARL----LDCTTW--SGAGP----GLMDAVTKGAMQAGK 47 (209)
Q Consensus 7 ~y~~A~~LG~~La~~----g~~~V~--~GG~~----GlM~ava~ga~~~gG 47 (209)
.+..|+.+|.+||++ |..-|+ -||.. |-.-|+++||.++|-
T Consensus 78 N~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL 128 (193)
T PRK08569 78 NTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGL 128 (193)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCC
Confidence 455577888887765 333322 46663 899999999999884
No 68
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=33.03 E-value=68 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=27.4
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
.|+||+.=| .=||+|.+..+++.-- ..|||||-+.
T Consensus 79 ~dGiVVtHG-TDTmeeTA~~L~~~l~------~~kPVVlTGA 113 (323)
T cd00411 79 YDGFVITHG-TDTMEETAYFLSLTLE------NDKPVVLTGS 113 (323)
T ss_pred cCcEEEEcC-cccHHHHHHHHHHHhc------CCCCEEEECC
Confidence 599999875 7899999988876321 2799999864
No 69
>PRK11096 ansB L-asparaginase II; Provisional
Probab=33.02 E-value=72 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEe
Q 028413 98 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140 (209)
Q Consensus 98 ~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln 140 (209)
.+.|+||++-| .=||+|....+++. +. ..|||||.+
T Consensus 99 ~~~dGiVVtHG-TDTme~tA~~Ls~~-~~-----~~kPVVlTG 134 (347)
T PRK11096 99 DKTDGFVITHG-TDTMEETAYFLDLT-VK-----CDKPVVLVG 134 (347)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHh-cc-----CCCCEEEeC
Confidence 34689988764 78999999888874 32 379999997
No 70
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=32.98 E-value=1.1e+02 Score=28.48 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=33.4
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC-----CccchHHHHHHHh
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 154 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~-----~g~w~~l~~~l~~ 154 (209)
.|+||++=| .=||+|-+.+++++--. .+|||||.+. .--.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-----~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-----LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-----CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 599999875 78999999888774221 2799999975 1133455555544
No 71
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=32.60 E-value=56 Score=25.12 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEeCCCcccHHHHH-H---HHHHHHhhhhcCCCCccEEEEeC
Q 028413 103 VVALPGGVGTLDEMF-E---ILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 103 ~I~lPGG~GTLeEl~-e---~~t~~ql~~~~~~~~kPiilln~ 141 (209)
.|++|||.|..+-+. . +..+.+-- +. +.|||...-.
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~-~~--~~k~iaaIC~ 79 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEF-YE--AGKPIAAICH 79 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHH-HH--TT-EEEEETT
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHH-HH--cCCeEEecCC
Confidence 567899999655554 1 22222211 11 4789988753
No 72
>PRK11914 diacylglycerol kinase; Reviewed
Probab=32.58 E-value=93 Score=27.02 Aligned_cols=45 Identities=9% Similarity=-0.082 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC
Q 028413 10 QSFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 55 (209)
Q Consensus 10 ~A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~ 55 (209)
+|.++.+..++.+.-+|+-.|+-|-.-.++.+.... +..+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGDGVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccC-CCcEEEEeC
Confidence 367777777776655777788889888888888654 356899983
No 73
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=32.16 E-value=68 Score=26.23 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=48.2
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHH----HhhhhcCCCCccEEEEeC--CccchH-H-HHHHHhHHHcCCC--Chhccccc
Q 028413 100 RTAVVALPGGVGTLDEMFEILALI----QLERIGSELPVPFLVMNY--DSFYKK-L-LDFLGDCEDWGTV--AKDEVASL 169 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~----ql~~~~~~~~kPiilln~--~g~w~~-l-~~~l~~~~~~gfi--~~~~~~~~ 169 (209)
+|++|+.|=-.+|+.-+..=++-. -.-... .++|+++.=. ...|.. . .+.++.+.+.|+. .|.. ..
T Consensus 78 aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~--~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~--g~ 153 (182)
T PRK07313 78 ADLFLVAPATANTIAKLAHGIADDLVTSVALALP--ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKE--GL 153 (182)
T ss_pred cCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcC--CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCC--Cc
Confidence 499999999999987764211100 000111 3689988832 245653 2 2345556666642 2221 11
Q ss_pred -------EEEeCCHHHHHHHHHhhhc
Q 028413 170 -------WKICDSNSEALSYLAEFYD 188 (209)
Q Consensus 170 -------i~~~~~~ee~~~~l~~~~~ 188 (209)
.---.+++++++++.+++.
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1124678999999988754
No 74
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=31.24 E-value=3.2e+02 Score=23.03 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=22.7
Q ss_pred HHHHcCCCEEEccCCccHHHHHHHHHHhCCC
Q 028413 17 EIARLLDCTTWSGAGPGLMDAVTKGAMQAGK 47 (209)
Q Consensus 17 ~La~~g~~~V~~GG~~GlM~ava~ga~~~gG 47 (209)
.|+++ .-+|++=-.+=-|.-++++++..||
T Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~ 32 (242)
T cd01170 3 KLREK-KPLVHCITNYVVMNFVANVLLAIGA 32 (242)
T ss_pred hhhhC-CCeEEEccchhhHhHHHHHHHHhCC
Confidence 34555 5567666666679999999999998
No 75
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=31.10 E-value=1.6e+02 Score=28.47 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=15.4
Q ss_pred EEeCCHHHHHHHHHhhhcCC
Q 028413 171 KICDSNSEALSYLAEFYDLS 190 (209)
Q Consensus 171 ~~~~~~ee~~~~l~~~~~~~ 190 (209)
..+++++|+.+.|++.+..+
T Consensus 502 ~~v~~~~el~~al~~al~~~ 521 (550)
T COG0028 502 IRVETPEELEEALEEALASD 521 (550)
T ss_pred EEeCCHHHHHHHHHHHHhCC
Confidence 45679999999998876543
No 76
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=31.00 E-value=1.6e+02 Score=22.49 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHc----CCC-EEE-ccCC--ccHHHHHHHHHHhCCC
Q 028413 10 QSFELGGEIARL----LDC-TTW-SGAG--PGLMDAVTKGAMQAGK 47 (209)
Q Consensus 10 ~A~~LG~~La~~----g~~-~V~-~GG~--~GlM~ava~ga~~~gG 47 (209)
.|+.+|..||++ |.. +|+ -||. .|-+.|+++||.++|-
T Consensus 67 aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 67 AAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 367777777766 433 333 3555 6999999999999883
No 77
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=30.52 E-value=1e+02 Score=26.82 Aligned_cols=32 Identities=28% Similarity=0.719 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHH
Q 028413 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD 150 (209)
Q Consensus 112 TLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~ 150 (209)
|++.+|+.+.-.+-. ..++|++++. ||+++..
T Consensus 70 ~~~~~~~~~~~ir~~----~~~~pivlm~---Y~N~i~~ 101 (259)
T PF00290_consen 70 TLEKIFELVKEIRKK----EPDIPIVLMT---YYNPIFQ 101 (259)
T ss_dssp -HHHHHHHHHHHHHH----CTSSEEEEEE----HHHHHH
T ss_pred CHHHHHHHHHHHhcc----CCCCCEEEEe---eccHHhc
Confidence 688888877655421 1479999995 9998764
No 78
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=30.40 E-value=73 Score=26.80 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=9.8
Q ss_pred cEEEEeCCCcccHH
Q 028413 101 TAVVALPGGVGTLD 114 (209)
Q Consensus 101 Da~I~lPGG~GTLe 114 (209)
|+ |++|||.|..+
T Consensus 87 Da-lviPGG~g~~~ 99 (217)
T PRK11780 87 DA-LIVPGGFGAAK 99 (217)
T ss_pred CE-EEECCCCchhh
Confidence 54 57999999753
No 79
>PRK13059 putative lipid kinase; Reviewed
Probab=29.67 E-value=54 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=22.1
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEE
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiill 139 (209)
| .|+.-||=||+.|+...+.. . + .+.|+.++
T Consensus 58 d-~vi~~GGDGTv~evv~gl~~--~---~--~~~~lgvi 88 (295)
T PRK13059 58 K-YILIAGGDGTVDNVVNAMKK--L---N--IDLPIGIL 88 (295)
T ss_pred C-EEEEECCccHHHHHHHHHHh--c---C--CCCcEEEE
Confidence 5 56678999999999876632 1 1 24688887
No 80
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=29.49 E-value=97 Score=28.36 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=38.9
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEe-CCHHHH
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKIC-DSNSEA 179 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~-~~~ee~ 179 (209)
=+-|+|.||+|| .|+ =||+. .+||.|=++ -+.=++-+++.++..|- .+.+..+ -.++++
T Consensus 10 vkaiILvGG~GT--RLr-PLT~t--------~pKPlVpfg---n~pmI~hqieal~nsGi------~~I~la~~y~s~sl 69 (371)
T KOG1322|consen 10 VKAIILVGGYGT--RLR-PLTLT--------RPKPLVPFG---NKPMILHQIEALINSGI------TKIVLATQYNSESL 69 (371)
T ss_pred eeEEEEecCCCc--eee-ceecc--------CCCcccccC---cchhhHHHHHHHHhCCC------cEEEEEEecCcHHH
Confidence 578999999999 232 23331 478888664 24555566777777663 2333333 334546
Q ss_pred HHHHHhh
Q 028413 180 LSYLAEF 186 (209)
Q Consensus 180 ~~~l~~~ 186 (209)
.+.+.+-
T Consensus 70 ~~~~~k~ 76 (371)
T KOG1322|consen 70 NRHLSKA 76 (371)
T ss_pred HHHHHHH
Confidence 6666543
No 81
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=29.33 E-value=2e+02 Score=24.78 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=34.4
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHH
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~ 179 (209)
||+||.=+| |..+|.+ .. .+|+|+.+..+-+. ...+.|. .+.+.++++++
T Consensus 278 ad~~v~~Sg--gi~~Ea~---~~----------g~PvI~~~~~~~~~-------~~~~~g~--------~~~~~~~~~~i 327 (363)
T cd03786 278 ADLVLTDSG--GIQEEAS---FL----------GVPVLNLRDRTERP-------ETVESGT--------NVLVGTDPEAI 327 (363)
T ss_pred CcEEEEcCc--cHHhhhh---hc----------CCCEEeeCCCCccc-------hhhheee--------EEecCCCHHHH
Confidence 399886555 5555532 21 48999986422221 1222231 12233578999
Q ss_pred HHHHHhhhcCC
Q 028413 180 LSYLAEFYDLS 190 (209)
Q Consensus 180 ~~~l~~~~~~~ 190 (209)
.+.+.+.+..+
T Consensus 328 ~~~i~~ll~~~ 338 (363)
T cd03786 328 LAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHhcCc
Confidence 99998876544
No 82
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=29.33 E-value=4e+02 Score=23.49 Aligned_cols=101 Identities=23% Similarity=0.198 Sum_probs=52.2
Q ss_pred cCCCEEEccC--CccHHHHHHHHHHhCCCcEEEE-ecCCCcccccccCCCCCCCccc-eeeccchHHHH-HHhHhhhhhc
Q 028413 21 LLDCTTWSGA--GPGLMDAVTKGAMQAGKPVGGF-KVGKEAGEWTASNFHPYLPLET-YLTCRFFSARK-HGLIDCAVRN 95 (209)
Q Consensus 21 ~g~~~V~~GG--~~GlM~ava~ga~~~gG~viGi-~~~~~~~~~~~~~~n~~l~~e~-~i~~~~~~~Rk-~~m~~~~~~~ 95 (209)
+|..+|++|. +.|---..+.+|...|--.+-+ .|.. .. .....+.| |. ++.+.+...+. ..+.+..
T Consensus 32 ~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~-~~----~~~~s~~P-e~mv~~~~~~~~~~~~~~~~~~--- 102 (284)
T COG0063 32 YGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPE-AA----SALKSYLP-ELMVIEVEGKKLLEERELVERA--- 102 (284)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchh-hh----hhHhhcCc-ceeEeecccchhhHHhhhhccC---
Confidence 4566777765 3688888889999988433333 3321 10 00122333 22 22222222222 2344444
Q ss_pred CCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCC-ccEEEEeCCc
Q 028413 96 DSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELP-VPFLVMNYDS 143 (209)
Q Consensus 96 ~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~-kPiilln~~g 143 (209)
|++++= -|+|.-+|..+++...-. .. +|+|+- -++
T Consensus 103 -----~avviG-pGlG~~~~~~~~~~~~l~------~~~~p~ViD-ADa 138 (284)
T COG0063 103 -----DAVVIG-PGLGRDAEGQEALKELLS------SDLKPLVLD-ADA 138 (284)
T ss_pred -----CEEEEC-CCCCCCHHHHHHHHHHHh------ccCCCEEEe-CcH
Confidence 776654 578988877766654321 12 788654 344
No 83
>PRK07102 short chain dehydrogenase; Provisional
Probab=29.08 E-value=72 Score=26.05 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=25.5
Q ss_pred CEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 24 ~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
..+++||..|+-.++++-..+.|-.|+.+.
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAA 32 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 467899999999999999998888877664
No 84
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=29.07 E-value=83 Score=25.83 Aligned_cols=62 Identities=24% Similarity=0.421 Sum_probs=35.3
Q ss_pred EEeCCCccc-HHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHH-HHhHHHcCCCChhcccccEEEe--CCHHHH
Q 028413 104 VALPGGVGT-LDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDF-LGDCEDWGTVAKDEVASLWKIC--DSNSEA 179 (209)
Q Consensus 104 I~lPGG~GT-LeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~-l~~~~~~gfi~~~~~~~~i~~~--~~~ee~ 179 (209)
|+|-||.|| |..+ ....+||++-+.. .+ |+++. |+.+...|+ .+.+.++ ...+.+
T Consensus 3 vIla~G~GtRl~pl------------t~~~pK~ll~i~g-~~--pli~~~l~~l~~~g~------~~ii~V~~~~~~~~i 61 (248)
T PF00483_consen 3 VILAGGKGTRLRPL------------TDTIPKPLLPIGG-KY--PLIDYVLENLANAGI------KEIIVVVNGYKEEQI 61 (248)
T ss_dssp EEEEESCCGGGTTT------------TTTSSGGGSEETT-EE--EHHHHHHHHHHHTTC------SEEEEEEETTTHHHH
T ss_pred EEECCCCCccCchh------------hhccccccceecC-CC--cchhhhhhhhcccCC------ceEEEEEeecccccc
Confidence 678899999 2221 1124789887752 22 67655 455666664 2323333 345666
Q ss_pred HHHHHhh
Q 028413 180 LSYLAEF 186 (209)
Q Consensus 180 ~~~l~~~ 186 (209)
.+++.+.
T Consensus 62 ~~~~~~~ 68 (248)
T PF00483_consen 62 EEHLGSG 68 (248)
T ss_dssp HHHHTTS
T ss_pred ccccccc
Confidence 6666554
No 85
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=29.00 E-value=1.7e+02 Score=26.34 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=10.4
Q ss_pred EEEEeCCCccc
Q 028413 102 AVVALPGGVGT 112 (209)
Q Consensus 102 a~I~lPGG~GT 112 (209)
|||.|-||.||
T Consensus 2 a~vllaGG~GT 12 (315)
T cd06424 2 VFVLVAGGLGE 12 (315)
T ss_pred EEEEecCCCcc
Confidence 79999999999
No 86
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=28.99 E-value=80 Score=27.63 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=25.2
Q ss_pred CCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCC
Q 028413 98 CDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD 142 (209)
Q Consensus 98 ~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~ 142 (209)
.+||+|++|+-..=+++-+--+..- +. .++||.++|+.
T Consensus 245 ~e~dg~LvlGsSL~v~Sg~r~i~~a-----~~--~k~pi~IvNIG 282 (305)
T KOG2683|consen 245 KECDGFLVLGSSLMVLSGFRFIRHA-----HE--KKKPIAIVNIG 282 (305)
T ss_pred hccCceEEechhHHHHHHHHHHHHH-----Hh--hcCcEEEEecC
Confidence 4579999997666555554433322 11 37999999985
No 87
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=28.87 E-value=3.2e+02 Score=22.22 Aligned_cols=78 Identities=9% Similarity=0.119 Sum_probs=44.9
Q ss_pred ccEEEEeCCCcccHHHHHHHH-----HH---HHhhhhcCCCCccEEEEeCCccchH-HH-HHHHhHHHcCC--CChhccc
Q 028413 100 RTAVVALPGGVGTLDEMFEIL-----AL---IQLERIGSELPVPFLVMNYDSFYKK-LL-DFLGDCEDWGT--VAKDEVA 167 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~-----t~---~ql~~~~~~~~kPiilln~~g~w~~-l~-~~l~~~~~~gf--i~~~~~~ 167 (209)
+|++|+.|=-.+|+.-+..=+ +- .-+. .++|+++.=. ..|.. .. +-++.+.+.|. +.|. .
T Consensus 76 aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~-----~~~pv~i~P~-~m~~~~~~~~Nl~~L~~~G~~ii~P~--~ 147 (181)
T TIGR00421 76 FDGMVVVPCSMKTLSAIANGYADNLITRAADVCLK-----ERRKLVLVPR-ETPLNSIHLENMLRLSRMGAIILPPM--P 147 (181)
T ss_pred hCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHh-----cCCCEEEEeC-CCcCCHHHHHHHHHHHHCCCEEECCC--C
Confidence 499999999999987765311 11 1121 3689988864 34543 22 22444555554 3442 1
Q ss_pred ccEEEeCCHHHHHHHHHh
Q 028413 168 SLWKICDSNSEALSYLAE 185 (209)
Q Consensus 168 ~~i~~~~~~ee~~~~l~~ 185 (209)
..+.--.+++|+++++..
T Consensus 148 g~~~~p~~~~~~~~~i~~ 165 (181)
T TIGR00421 148 AFYTRPKSVEDMIDFIVG 165 (181)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 223334788997776654
No 88
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=28.65 E-value=3.7e+02 Score=22.85 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=19.7
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCc
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS 143 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g 143 (209)
|++++ .||+++-+.+.++..... . ..+|+ +++.++
T Consensus 94 davvi-g~Gl~~~~~~~~l~~~~~--~----~~~pv-VlDa~g 128 (272)
T TIGR00196 94 DVVVI-GPGLGQDPSFKKAVEEVL--E----LDKPV-VLDADA 128 (272)
T ss_pred CEEEE-cCCCCCCHHHHHHHHHHH--h----cCCCE-EEEhHH
Confidence 76666 666999666444443321 1 25785 666654
No 89
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=28.45 E-value=2.1e+02 Score=22.33 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=17.9
Q ss_pred cEEEEeCCCcccHHHH---HHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 101 TAVVALPGGVGTLDEM---FEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl---~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
|++| +|||.+.. ++ -....|.+-- . .+.|||+-+..
T Consensus 64 D~lv-ipgg~~~~-~~~~~~~~~~~l~~~--~-~~~k~i~aic~ 102 (183)
T cd03139 64 DVLL-VPGGGGTR-ALVNDPALLDFIRRQ--A-ARAKYVTSVCT 102 (183)
T ss_pred CEEE-ECCCcchh-hhccCHHHHHHHHHh--c-ccCCEEEEEch
Confidence 7665 67887763 11 1123332211 1 14688877753
No 90
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=28.31 E-value=1.2e+02 Score=23.61 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=24.4
Q ss_pred HHHcCCCChhcccccEEEeCCHHHHHHHHHhhhcCCC---CCccccccccccccc
Q 028413 155 CEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS---IDKRVHEVNLKSTHG 206 (209)
Q Consensus 155 ~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 206 (209)
+.+.|.++.+. +.+.-...+.+++.++... .....+.+++.++.|
T Consensus 106 La~aGlL~g~~-------~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g 153 (166)
T PF13278_consen 106 LAEAGLLDGRR-------ATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGG 153 (166)
T ss_dssp HHHTTTTTTSE-------E---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESS
T ss_pred HhhhhccCccc-------ccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecH
Confidence 46678776531 3444566777877665432 334555666665555
No 91
>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.
Probab=28.23 E-value=1e+02 Score=22.91 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHhHHHcCCCChhcccccEEEeCCHHHHHHHHHhhhcCCC
Q 028413 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191 (209)
Q Consensus 147 ~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~~~~~~~ 191 (209)
..+..++.+.+.|+++..-.-+..+++=| +|-+++|++|+..|+
T Consensus 39 ~V~k~mqSL~SrgyVke~faWrh~Yw~LT-~eGIeyLR~yL~LP~ 82 (95)
T PF03501_consen 39 HVIKAMQSLKSRGYVKEQFAWRHYYWYLT-NEGIEYLREYLHLPA 82 (95)
T ss_dssp HHHHHHHHHHHCTSEEEEECTTEEEEEE--HHHHHHHHHHC-SST
T ss_pred HHHHHHhcccchhhhcCeecceEEEEEEc-chhHHHHHHHhCCCh
Confidence 56677888999999876544344444443 567799999987665
No 92
>PTZ00378 hypothetical protein; Provisional
Probab=28.17 E-value=96 Score=29.84 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.6
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHh
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQL 125 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql 125 (209)
++++++=|.-+||+.|..++..+.+-
T Consensus 397 ~NaiLIK~NQIGTlSEtieav~lA~~ 422 (518)
T PTZ00378 397 TSNIVLNPCAIGTLSDVVEIVRAVGE 422 (518)
T ss_pred CceEEEccccceeHHHHHHHHHHHHH
Confidence 49999999999999999999988754
No 93
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.10 E-value=96 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=25.0
Q ss_pred CEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 24 ~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
..+++||..|+-.++++-..+.|-.|+.+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 567899999999999999988888776653
No 94
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=26.97 E-value=75 Score=29.37 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=31.9
Q ss_pred chH-HHHHHHhHHHcCCCChhcccc--cEEEeCCHHHHHHHHHh
Q 028413 145 YKK-LLDFLGDCEDWGTVAKDEVAS--LWKICDSNSEALSYLAE 185 (209)
Q Consensus 145 w~~-l~~~l~~~~~~gfi~~~~~~~--~i~~~~~~ee~~~~l~~ 185 (209)
|.. +-+-++.|+.+|.|++++++. +..++.+++|+-+.+++
T Consensus 255 ~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~ 298 (386)
T PLN02668 255 FGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEA 298 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhh
Confidence 444 556678899999999987654 44677999999998874
No 95
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=26.95 E-value=3.2e+02 Score=24.96 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcC--CCEEEccCC---ccHHHHHHHHHHhCC
Q 028413 11 SFELGGEIARLL--DCTTWSGAG---PGLMDAVTKGAMQAG 46 (209)
Q Consensus 11 A~~LG~~La~~g--~~~V~~GG~---~GlM~ava~ga~~~g 46 (209)
..+|+..+.+.| ..+|+||+. .|+.+.+.+...++|
T Consensus 37 ~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~g 77 (395)
T PRK15454 37 VSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKG 77 (395)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcC
Confidence 367888887754 345565543 466666666555555
No 96
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=26.90 E-value=2.4e+02 Score=25.34 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=20.4
Q ss_pred HHHHHHHHHcC--CCEEEccCC---ccHHHHHHHHHHhCC
Q 028413 12 FELGGEIARLL--DCTTWSGAG---PGLMDAVTKGAMQAG 46 (209)
Q Consensus 12 ~~LG~~La~~g--~~~V~~GG~---~GlM~ava~ga~~~g 46 (209)
.+|+..+.+.| ..+|++|.. .|+.+.+.+...++|
T Consensus 15 ~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g 54 (374)
T cd08189 15 AQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAG 54 (374)
T ss_pred HHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcC
Confidence 67888887754 456777654 345555554333444
No 97
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=26.89 E-value=96 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.0
Q ss_pred CCCEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 22 g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
+..+++|||..|+=.++++-..+.|-.|+.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 35688899999999999999999987777764
No 98
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=26.72 E-value=1.6e+02 Score=27.47 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=34.2
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC-----CccchHHHHHHHh
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 154 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~-----~g~w~~l~~~l~~ 154 (209)
.|+||++=| .=||+|-+.+++++- + .+|||||.+. .--.|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l-~-----~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML-K-----TPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc-C-----CCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 599999875 689999998888743 2 3799999975 1134555555544
No 99
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=26.67 E-value=1.4e+02 Score=22.34 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCC-CEEEccCCccHHHHHHHHHHhCCC---cEEEEecC
Q 028413 11 SFELGGEIARLLD-CTTWSGAGPGLMDAVTKGAMQAGK---PVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~-~~V~~GG~~GlM~ava~ga~~~gG---~viGi~~~ 55 (209)
+.++.+....... ..|+..|+-|-.-.+..+.+..+. ..+||+|.
T Consensus 42 ~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 42 AEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecC
Confidence 3445553333323 366666777777777777877765 37899883
No 100
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=26.62 E-value=4.3e+02 Score=23.90 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=40.9
Q ss_pred ccEEE-EeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCc-cchHHHHHHHhHHHcCCCChhcccccEEEeCCHH
Q 028413 100 RTAVV-ALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDS-FYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNS 177 (209)
Q Consensus 100 sDa~I-~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g-~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~e 177 (209)
.|+++ .++|++...+++.+.+.-..- .. ..+|||++.. .| ..+.... .+.+.|+ -+.+++|++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~-~~--~~~kPvv~~~-~g~~~~~~~~---~L~~~Gi--------~ip~f~~pe 375 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVK-EV--GVTVPLVVRL-EGTNVELGKK---ILAESGL--------NIIAADTLD 375 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH-hc--CCCCcEEEEe-CCCCHHHHHH---HHHHCCC--------CceecCCHH
Confidence 46665 466777777888777764321 10 1368995543 34 2222221 1222221 145789999
Q ss_pred HHHHHHHhh
Q 028413 178 EALSYLAEF 186 (209)
Q Consensus 178 e~~~~l~~~ 186 (209)
++++.+.+.
T Consensus 376 ~A~~al~~~ 384 (388)
T PRK00696 376 DAAQKAVEA 384 (388)
T ss_pred HHHHHHHHH
Confidence 999998764
No 101
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=26.59 E-value=22 Score=21.08 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=17.4
Q ss_pred HHhHHHcCCCChhcccccEEEe-CCHHHHHHHH
Q 028413 152 LGDCEDWGTVAKDEVASLWKIC-DSNSEALSYL 183 (209)
Q Consensus 152 l~~~~~~gfi~~~~~~~~i~~~-~~~ee~~~~l 183 (209)
++.+.+-||-.. .....+..+ .+++.++++|
T Consensus 6 v~~L~~mGf~~~-~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 6 VQQLMEMGFSRE-QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHTS-HH-HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHcCCCHH-HHHHHHHHcCCCHHHHHHhC
Confidence 445555588443 344444445 4678887765
No 102
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=26.49 E-value=3.8e+02 Score=24.70 Aligned_cols=35 Identities=37% Similarity=0.449 Sum_probs=24.3
Q ss_pred HHHHHHHHHcC--CCEEEccCC---ccHHHHHHHHHHhCC
Q 028413 12 FELGGEIARLL--DCTTWSGAG---PGLMDAVTKGAMQAG 46 (209)
Q Consensus 12 ~~LG~~La~~g--~~~V~~GG~---~GlM~ava~ga~~~g 46 (209)
.+|++.+.+.| ..+|+|+.+ .|+.+.+.+.-.+.|
T Consensus 18 ~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~ 57 (377)
T COG1454 18 KELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAG 57 (377)
T ss_pred HHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcC
Confidence 56777777532 567888776 678888888666655
No 103
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=26.33 E-value=5.1e+02 Score=23.74 Aligned_cols=90 Identities=22% Similarity=0.180 Sum_probs=47.5
Q ss_pred EEEccCCcc----HHHHHHHHHHhCCCcEEEEecCCCcccccccCCCCCCCccceeeccchHHHHHHhHhhhhhcCCCCc
Q 028413 25 TTWSGAGPG----LMDAVTKGAMQAGKPVGGFKVGKEAGEWTASNFHPYLPLETYLTCRFFSARKHGLIDCAVRNDSCDR 100 (209)
Q Consensus 25 ~V~~GG~~G----lM~ava~ga~~~gG~viGi~~~~~~~~~~~~~~n~~l~~e~~i~~~~~~~Rk~~m~~~~~~~~~~~s 100 (209)
+.++=|+.+ +-..+.+.+.+.+.++|=-....... +..++ +..++...... ..++..|
T Consensus 240 vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~~-------~~~~p-~n~~v~~~~p~--~~~l~~a-------- 301 (406)
T COG1819 240 VYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARDT-------LVNVP-DNVIVADYVPQ--LELLPRA-------- 301 (406)
T ss_pred EEEEcCCcccHHHHHHHHHHHHhcCCcEEEEeccccccc-------cccCC-CceEEecCCCH--HHHhhhc--------
Confidence 333445555 55677777777787665333221110 11111 12333333322 2255654
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHH
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL 148 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l 148 (209)
|+ ++-.||.||..|. +. ..+|+|++-. .||..
T Consensus 302 d~-vI~hGG~gtt~ea---L~----------~gvP~vv~P~--~~DQ~ 333 (406)
T COG1819 302 DA-VIHHGGAGTTSEA---LY----------AGVPLVVIPD--GADQP 333 (406)
T ss_pred CE-EEecCCcchHHHH---HH----------cCCCEEEecC--Ccchh
Confidence 55 5579999998774 32 2689999853 25553
No 104
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=26.26 E-value=1.3e+02 Score=24.81 Aligned_cols=79 Identities=8% Similarity=0.012 Sum_probs=47.4
Q ss_pred ccEEEEeCCCcccHHHHHHHHHH-------HHhhhhcCCCCccEEEEeCCccchHHH--HHHHhHHHcCC--CChhcccc
Q 028413 100 RTAVVALPGGVGTLDEMFEILAL-------IQLERIGSELPVPFLVMNYDSFYKKLL--DFLGDCEDWGT--VAKDEVAS 168 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~-------~ql~~~~~~~~kPiilln~~g~w~~l~--~~l~~~~~~gf--i~~~~~~~ 168 (209)
+|++|+.|=-.+|+.-+..=++- ...-. .++|+++.-. ..|..-. +.++.+.+.|+ +.|. ..
T Consensus 79 aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~----~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~--~g 151 (185)
T PRK06029 79 TDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLK----ERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPV--PA 151 (185)
T ss_pred hCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHh----cCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCC--cc
Confidence 49999999999998776531111 01111 3689998864 5665332 34555666564 3342 22
Q ss_pred cEEEeCCHHHHHHHHHh
Q 028413 169 LWKICDSNSEALSYLAE 185 (209)
Q Consensus 169 ~i~~~~~~ee~~~~l~~ 185 (209)
.+.--.|.+++++++..
T Consensus 152 ~~a~p~~~~~~~~~~v~ 168 (185)
T PRK06029 152 FYHRPQTLEDMVDQTVG 168 (185)
T ss_pred cccCCCCHHHHHHHHHH
Confidence 33334788998888753
No 105
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=26.19 E-value=68 Score=28.49 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.4
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHh
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQL 125 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql 125 (209)
|+++++=|.-+||+.|..++..+.|-
T Consensus 201 ~na~llK~NQigTvte~lea~~~a~~ 226 (295)
T PF00113_consen 201 CNALLLKPNQIGTVTETLEAVKLAKS 226 (295)
T ss_dssp -SEEEE-HHHHSSHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 59999999999999999999998865
No 106
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=26.18 E-value=58 Score=29.26 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=20.3
Q ss_pred CEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 24 ~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
.+|+|||..|++-|+ .|.++|-+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 478899999988776 4777888887764
No 107
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.11 E-value=3.2e+02 Score=22.62 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=20.3
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
.|++|+.|.......+..+.+. . ...|+|+++.
T Consensus 56 vdgiii~~~~~~~~~~~i~~~~-----~----~~iPvV~~~~ 88 (272)
T cd06313 56 WDFIAVDPLGIGTLTEAVQKAI-----A----RGIPVIDMGT 88 (272)
T ss_pred CCEEEEcCCChHHhHHHHHHHH-----H----CCCcEEEeCC
Confidence 3999999876554455432221 1 2579998873
No 108
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=25.98 E-value=3.8e+02 Score=24.24 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=13.7
Q ss_pred ccEEEEeCCCcccHHHHHHHHH
Q 028413 100 RTAVVALPGGVGTLDEMFEILA 121 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t 121 (209)
+|++|+++|| +.-.+.-+.+
T Consensus 85 ~D~IIaiGGG--S~iD~aK~ia 104 (383)
T cd08186 85 AQAVIAIGGG--SPIDSAKSAA 104 (383)
T ss_pred CCEEEEeCCc--cHHHHHHHHH
Confidence 5999999998 4444444443
No 109
>PRK11914 diacylglycerol kinase; Reviewed
Probab=25.88 E-value=61 Score=28.19 Aligned_cols=29 Identities=28% Similarity=0.649 Sum_probs=21.5
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEE
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiill 139 (209)
|. |+.-||=||+.|+...+. + .+.|+.++
T Consensus 66 d~-vvv~GGDGTi~evv~~l~-------~--~~~~lgii 94 (306)
T PRK11914 66 DA-LVVVGGDGVISNALQVLA-------G--TDIPLGII 94 (306)
T ss_pred CE-EEEECCchHHHHHhHHhc-------c--CCCcEEEE
Confidence 54 668899999999976652 1 25788887
No 110
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.84 E-value=3.1e+02 Score=24.12 Aligned_cols=41 Identities=29% Similarity=0.649 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHH-----HHHHHhHHHcC
Q 028413 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKL-----LDFLGDCEDWG 159 (209)
Q Consensus 112 TLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l-----~~~l~~~~~~g 159 (209)
|++..++.+....- .+ ..+||+|+. ||+++ ..|++.+.+.|
T Consensus 77 t~~~~lel~~~~r~--~~--~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~G 122 (265)
T COG0159 77 TLEDTLELVEEIRA--KG--VKVPIVLMT---YYNPIFNYGIEKFLRRAKEAG 122 (265)
T ss_pred CHHHHHHHHHHHHh--cC--CCCCEEEEE---eccHHHHhhHHHHHHHHHHcC
Confidence 67777777655431 11 468999995 66664 45555565555
No 111
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=25.73 E-value=1.2e+02 Score=25.42 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.2
Q ss_pred cEEEEeCCCcccH
Q 028413 101 TAVVALPGGVGTL 113 (209)
Q Consensus 101 Da~I~lPGG~GTL 113 (209)
| .|++|||.|..
T Consensus 84 D-alviPGG~~~~ 95 (213)
T cd03133 84 D-ALIFPGGFGAA 95 (213)
T ss_pred C-EEEECCCCchh
Confidence 5 45799999874
No 112
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=25.68 E-value=89 Score=27.88 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=36.6
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHH
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEA 179 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~ 179 (209)
||++|.-+| .+|+.| +++. .+|+|+.+.-. ....-. .+.+.+.|. -.++.|++++
T Consensus 283 aDv~V~~~g-~~ti~E---Ama~----------g~PvI~~~~~p-gqe~gn-~~~i~~~g~---------g~~~~~~~~l 337 (382)
T PLN02605 283 CDCIITKAG-PGTIAE---ALIR----------GLPIILNGYIP-GQEEGN-VPYVVDNGF---------GAFSESPKEI 337 (382)
T ss_pred CCEEEECCC-cchHHH---HHHc----------CCCEEEecCCC-ccchhh-HHHHHhCCc---------eeecCCHHHH
Confidence 399997665 478666 4443 58999987311 000000 112232221 1245889999
Q ss_pred HHHHHhhhcC
Q 028413 180 LSYLAEFYDL 189 (209)
Q Consensus 180 ~~~l~~~~~~ 189 (209)
.+.+.+.+..
T Consensus 338 a~~i~~ll~~ 347 (382)
T PLN02605 338 ARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHcC
Confidence 8888887553
No 113
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.63 E-value=1.7e+02 Score=26.33 Aligned_cols=17 Identities=6% Similarity=-0.146 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHhhhcCC
Q 028413 174 DSNSEALSYLAEFYDLS 190 (209)
Q Consensus 174 ~~~ee~~~~l~~~~~~~ 190 (209)
-+++.+.+.+.+++..+
T Consensus 332 ~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 332 CTPHPLAIALLLLLENG 348 (385)
T ss_pred CCHHHHHHHHHHHhcCC
Confidence 46888888888876543
No 114
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.63 E-value=2e+02 Score=23.92 Aligned_cols=48 Identities=31% Similarity=0.418 Sum_probs=29.0
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCcc--EEEEeCCccchHHHHHHHhHHHcCC
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVP--FLVMNYDSFYKKLLDFLGDCEDWGT 160 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kP--iilln~~g~w~~l~~~l~~~~~~gf 160 (209)
|+ |++.|| |+++|+++++ |..+ || -++.|.- -=+.+...++.+.+.|+
T Consensus 104 da-iFIGGg-~~i~~ile~~-~~~l--------~~ggrlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 104 DA-IFIGGG-GNIEEILEAA-WERL--------KPGGRLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred CE-EEECCC-CCHHHHHHHH-HHHc--------CcCCeEEEEee-cHHHHHHHHHHHHHcCC
Confidence 55 455666 9999999875 4444 34 5677742 12344445556666666
No 115
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=25.43 E-value=2.1e+02 Score=25.81 Aligned_cols=47 Identities=15% Similarity=0.002 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEccCC-ccHHHHHHHHHHhCCCcEEEEe
Q 028413 7 HYLQSFELGGEIARLLDCTTWSGAG-PGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 7 ~y~~A~~LG~~La~~g~~~V~~GG~-~GlM~ava~ga~~~gG~viGi~ 53 (209)
.++..+-|+.++.+.-.++|-.||- .=--.+.+-.|...|=+.+.+.
T Consensus 49 ~RKLefll~eal~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~il 96 (323)
T COG2515 49 IRKLEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLIL 96 (323)
T ss_pred HHHHHHHHhhhhhcCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEE
Confidence 3444678888888764455554554 4567777778888887877775
No 116
>KOG3344 consensus 40s ribosomal protein s10 [Translation, ribosomal structure and biogenesis]
Probab=25.42 E-value=1e+02 Score=24.50 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHcCCCChhcccccEEEeCCHHHHHHHHHhhhcCCC
Q 028413 147 KLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEFYDLSS 191 (209)
Q Consensus 147 ~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~~~~~~~ 191 (209)
.++..++.|.+.|+++..-....+++.-| .|-+++|++|+..|+
T Consensus 41 ~vikaMQSl~SrgYvkeqfaWrH~Yw~LT-neGi~yLR~YLhLP~ 84 (150)
T KOG3344|consen 41 HVIKAMQSLKSRGYVKEQFAWRHFYWYLT-NEGIEYLREYLHLPP 84 (150)
T ss_pred HHHHHHHHHhhhhhHHhhhhhheeeeeec-hhHHHHHHHHhcCCc
Confidence 45677788888888765433333444444 456688999977655
No 117
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=25.31 E-value=75 Score=27.53 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=22.1
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEe
Q 028413 103 VVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140 (209)
Q Consensus 103 ~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln 140 (209)
.|+.-||=||+.|+...+... +...+.|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~~~-----~~~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALAQI-----RDDAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHHhh-----CCCCCCcEEEEc
Confidence 566889999999998776321 111235788773
No 118
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.11 E-value=1e+02 Score=25.90 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=25.9
Q ss_pred CCEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 23 ~~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
..+++|||..|+=.++++-..+.|-+|+.+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEe
Confidence 3578899999999999999888888887764
No 119
>PRK08813 threonine dehydratase; Provisional
Probab=24.75 E-value=2.2e+02 Score=25.85 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=38.5
Q ss_pred cHHHHHH-HHHHHHHHHcC-CCEEEccCCccHHHHHHHHHHhCCCcEEEEecC
Q 028413 5 HPHYLQS-FELGGEIARLL-DCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 55 (209)
Q Consensus 5 ~p~y~~A-~~LG~~La~~g-~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~ 55 (209)
+|...+. ..+|.+|.+.. ..+|+..|+.|+...++++.++.+-+++|+-|.
T Consensus 161 np~~i~G~~Tig~EI~e~~pD~VvvpvGgGGliaGia~~lk~~~~rVigVqpe 213 (349)
T PRK08813 161 DPDVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRVVGAQVE 213 (349)
T ss_pred ChHHHHHHHHHHHHHHcCCCCEEEEEeCccHHHHHHHHHHhcCCCEEEEEEEC
Confidence 4544443 56777777643 567778888899999999999888899999763
No 120
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=24.71 E-value=1.3e+02 Score=27.04 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=34.1
Q ss_pred CccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC-----CccchHHHHHHHh
Q 028413 99 DRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-----DSFYKKLLDFLGD 154 (209)
Q Consensus 99 ~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~-----~g~w~~l~~~l~~ 154 (209)
..|+||+.=| .=||+|-+..+++.--+ .+|||||-+. .--.|...++.+.
T Consensus 81 ~~dG~VVtHG-TDTmeeTA~~L~~~l~~-----~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 81 DYDGFVILHG-TDTMAYTASALSFMLEN-----LGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred cCCeEEEeec-cchHHHHHHHHHHHHhC-----CCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 3599999875 67999998888764221 3799999875 1134555555544
No 121
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=24.60 E-value=2.7e+02 Score=25.12 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred HHHHHHHHHcC--CCEEEccCCc---cHHHHHHHHHHhCC
Q 028413 12 FELGGEIARLL--DCTTWSGAGP---GLMDAVTKGAMQAG 46 (209)
Q Consensus 12 ~~LG~~La~~g--~~~V~~GG~~---GlM~ava~ga~~~g 46 (209)
.+|+..+.+.| ..+|++|... |..+.+.....++|
T Consensus 17 ~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~ 56 (377)
T cd08176 17 KEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAG 56 (377)
T ss_pred HHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcC
Confidence 67788887754 3566666553 55555655554444
No 122
>PRK13057 putative lipid kinase; Reviewed
Probab=24.55 E-value=68 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=21.5
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEe
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMN 140 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln 140 (209)
|. |+.-||=||+.|+...+.- .+.|+.++-
T Consensus 52 d~-iiv~GGDGTv~~v~~~l~~---------~~~~lgiiP 81 (287)
T PRK13057 52 DL-VIVGGGDGTLNAAAPALVE---------TGLPLGILP 81 (287)
T ss_pred CE-EEEECchHHHHHHHHHHhc---------CCCcEEEEC
Confidence 64 5677999999999766531 246888773
No 123
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=24.23 E-value=2.8e+02 Score=24.70 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=10.9
Q ss_pred cEEEEeCCCccc
Q 028413 101 TAVVALPGGVGT 112 (209)
Q Consensus 101 Da~I~lPGG~GT 112 (209)
=|+|.|-||.||
T Consensus 4 vavl~LaGG~GT 15 (300)
T cd00897 4 LVVLKLNGGLGT 15 (300)
T ss_pred EEEEEecCCccc
Confidence 489999999999
No 124
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=24.20 E-value=2.4e+02 Score=21.52 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=26.2
Q ss_pred HHHHHHHHHHc----CCC-EEEc-cCC--ccHHHHHHHHHHhCCC
Q 028413 11 SFELGGEIARL----LDC-TTWS-GAG--PGLMDAVTKGAMQAGK 47 (209)
Q Consensus 11 A~~LG~~La~~----g~~-~V~~-GG~--~GlM~ava~ga~~~gG 47 (209)
|+.+|..||++ |.. +|+- ||. .|-+.|+++||.++|-
T Consensus 71 a~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 71 AKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 57777777766 433 3332 553 6999999999999883
No 125
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=24.18 E-value=3.9e+02 Score=24.02 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=20.8
Q ss_pred HHHHHHHHHcC--CCEEEccCC---ccHHHHHHHHHHhCC
Q 028413 12 FELGGEIARLL--DCTTWSGAG---PGLMDAVTKGAMQAG 46 (209)
Q Consensus 12 ~~LG~~La~~g--~~~V~~GG~---~GlM~ava~ga~~~g 46 (209)
.+|+..+.+.+ ..+|++|.. .|+.+.+.....+.|
T Consensus 15 ~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~ 54 (376)
T cd08193 15 ARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAG 54 (376)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcC
Confidence 67777777642 456777764 456666555444444
No 126
>PRK13059 putative lipid kinase; Reviewed
Probab=23.95 E-value=1.8e+02 Score=25.19 Aligned_cols=42 Identities=12% Similarity=-0.101 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCEEEccCCccHHHHHHHHHHhCC-CcEEEEecC
Q 028413 14 LGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAG-KPVGGFKVG 55 (209)
Q Consensus 14 LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~g-G~viGi~~~ 55 (209)
+.+..++.+.-.|+..|+-|---.++.|.+..+ ...+||+|.
T Consensus 48 ~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 48 NAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 344445555557778888888888888888765 356899983
No 127
>PRK15138 aldehyde reductase; Provisional
Probab=23.82 E-value=2.5e+02 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCEEEccCC----ccHHHHHHHHH
Q 028413 12 FELGGEIARLLDCTTWSGAG----PGLMDAVTKGA 42 (209)
Q Consensus 12 ~~LG~~La~~g~~~V~~GG~----~GlM~ava~ga 42 (209)
.+|+.++.+....+|++|+. .|+...+.+..
T Consensus 20 ~~l~~~l~~~~~~livt~~~~~~~~g~~~~v~~~L 54 (387)
T PRK15138 20 AGLREQIPADARVLITYGGGSVKKTGVLDQVLDAL 54 (387)
T ss_pred HHHHHHHhcCCeEEEECCCchHHhcCcHHHHHHHh
Confidence 67777776533456676643 45555544433
No 128
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.67 E-value=3.3e+02 Score=23.50 Aligned_cols=42 Identities=26% Similarity=0.649 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHH-----HHHhHHHcCC
Q 028413 112 TLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLD-----FLGDCEDWGT 160 (209)
Q Consensus 112 TLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~-----~l~~~~~~gf 160 (209)
|++++|+.+.-..- +..++|++++. ||+++.. +++.+.+.|.
T Consensus 72 ~~~~~~~~~~~~r~----~~~~~p~vlm~---Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIRE----KDPTIPIVLMT---YYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHh----cCCCCCEEEEe---cccHHhhcCHHHHHHHHHHcCC
Confidence 67777777654321 11468998884 8887665 4666665553
No 129
>PRK00861 putative lipid kinase; Reviewed
Probab=23.55 E-value=79 Score=27.40 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=20.8
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEE
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiill 139 (209)
|. |+.-||=||+.|+...+.- ...|+.++
T Consensus 59 d~-vv~~GGDGTl~evv~~l~~---------~~~~lgvi 87 (300)
T PRK00861 59 EL-IIASGGDGTLSAVAGALIG---------TDIPLGII 87 (300)
T ss_pred CE-EEEECChHHHHHHHHHHhc---------CCCcEEEE
Confidence 54 5568999999999766531 24678777
No 130
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=23.54 E-value=44 Score=30.84 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.0
Q ss_pred cHHHHH-HHHHHHHHHHcCCCEEEccCC
Q 028413 5 HPHYLQ-SFELGGEIARLLDCTTWSGAG 31 (209)
Q Consensus 5 ~p~y~~-A~~LG~~La~~g~~~V~~GG~ 31 (209)
+|.|.+ .+++.++||+.+.+.|+|||.
T Consensus 326 ~~~F~~GT~~l~~aia~~~a~sivGGGd 353 (384)
T PF00162_consen 326 IENFAEGTRALAKAIAKSGAFSIVGGGD 353 (384)
T ss_dssp SGGGCHHHHHHHHHHHHHTSEEEEESHH
T ss_pred hhhhhHHHHHHHHHHHhcCCeEEEcccH
Confidence 577888 799999999997778777664
No 131
>PRK10494 hypothetical protein; Provisional
Probab=23.44 E-value=1.7e+02 Score=25.32 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=7.8
Q ss_pred cEEEEeCCCc
Q 028413 101 TAVVALPGGV 110 (209)
Q Consensus 101 Da~I~lPGG~ 110 (209)
|++|+|+||.
T Consensus 80 d~IVVLGgG~ 89 (259)
T PRK10494 80 DYIVVLGGGY 89 (259)
T ss_pred CEEEEcCCCc
Confidence 7888888875
No 132
>PRK13057 putative lipid kinase; Reviewed
Probab=23.36 E-value=1.7e+02 Score=25.12 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~ 55 (209)
|.++.+.+. .+.-.|+..|+-|-...+.++.... +..+||+|.
T Consensus 40 a~~~~~~~~-~~~d~iiv~GGDGTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 40 LSEVIEAYA-DGVDLVIVGGGDGTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHHH-cCCCEEEEECchHHHHHHHHHHhcC-CCcEEEECC
Confidence 556666644 3455788889999999999998765 456899983
No 133
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.16 E-value=1.2e+02 Score=24.45 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=25.8
Q ss_pred CCCEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 22 g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
+..++++||..|+=.++++...+.|-.|+.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34678889999999999999988887776654
No 134
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=23.07 E-value=62 Score=33.37 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCEEEccCC-ccHHHHHHHHHHh
Q 028413 12 FELGGEIARLLDCTTWSGAG-PGLMDAVTKGAMQ 44 (209)
Q Consensus 12 ~~LG~~La~~g~~~V~~GG~-~GlM~ava~ga~~ 44 (209)
.+|+|.|..+-..+|+|||+ .|+--.-..-|++
T Consensus 829 sRLAR~LtGnaIgLVLGGGGARG~ahiGvl~ALe 862 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGGGARGAAHIGVLQALE 862 (1158)
T ss_pred HHHHHHHhCCeEEEEecCcchhhhhHHHHHHHHH
Confidence 57899998887889998886 3554444444444
No 135
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=23.02 E-value=3.2e+02 Score=25.38 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=40.8
Q ss_pred hHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC-CccchHHHHHHH--hHHH
Q 028413 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY-DSFYKKLLDFLG--DCED 157 (209)
Q Consensus 81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~-~g~w~~l~~~l~--~~~~ 157 (209)
|..|-..++.-| +.+|. -||+.|.=| +++. .||-+++-. .+-= .++++ ++.+
T Consensus 284 f~~~~~~ll~gA--------~~vVS-m~GYNTvCe---ILs~----------~k~aLivPr~~p~e---EQliRA~Rl~~ 338 (400)
T COG4671 284 FRNDFESLLAGA--------RLVVS-MGGYNTVCE---ILSF----------GKPALIVPRAAPRE---EQLIRAQRLEE 338 (400)
T ss_pred hhhhHHHHHHhh--------heeee-cccchhhhH---HHhC----------CCceEEeccCCCcH---HHHHHHHHHHh
Confidence 455556666655 66655 578999555 5554 588777742 2211 22332 3444
Q ss_pred cCCCChhcccccEEEeCCHHHHHHHHHhhhcC
Q 028413 158 WGTVAKDEVASLWKICDSNSEALSYLAEFYDL 189 (209)
Q Consensus 158 ~gfi~~~~~~~~i~~~~~~ee~~~~l~~~~~~ 189 (209)
-|.++-= ..+. -+++.+.++|......
T Consensus 339 LGL~dvL-~pe~----lt~~~La~al~~~l~~ 365 (400)
T COG4671 339 LGLVDVL-LPEN----LTPQNLADALKAALAR 365 (400)
T ss_pred cCcceee-Cccc----CChHHHHHHHHhcccC
Confidence 4543210 0011 1367777777665543
No 136
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=22.61 E-value=4e+02 Score=23.99 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=20.0
Q ss_pred HHHHHHHHHcC--CCEEEccCC---ccHHHHHHHHHHhCC
Q 028413 12 FELGGEIARLL--DCTTWSGAG---PGLMDAVTKGAMQAG 46 (209)
Q Consensus 12 ~~LG~~La~~g--~~~V~~GG~---~GlM~ava~ga~~~g 46 (209)
.+|+..+.+.| ..+|++|.+ .|+.+.+.....+.|
T Consensus 18 ~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~ 57 (379)
T TIGR02638 18 EDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAG 57 (379)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCC
Confidence 56777777654 456677654 245555555444444
No 137
>TIGR00035 asp_race aspartate racemase.
Probab=22.24 E-value=4.6e+02 Score=21.75 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=40.8
Q ss_pred EEeCCCcccHH--HHHHHHH---HHHhhhhcCCCCccEEEEeCCcc-----------chHHHHHHHhHHHcCCCChhccc
Q 028413 104 VALPGGVGTLD--EMFEILA---LIQLERIGSELPVPFLVMNYDSF-----------YKKLLDFLGDCEDWGTVAKDEVA 167 (209)
Q Consensus 104 I~lPGG~GTLe--El~e~~t---~~ql~~~~~~~~kPiilln~~g~-----------w~~l~~~l~~~~~~gfi~~~~~~ 167 (209)
|-+-||.|.+. +++.-+. -.+.++ ...|+++++.-.+ |+.....+.+.++ ++.+...+
T Consensus 4 iGiiGGmgp~at~~~~~~i~~~~~a~~d~----~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~--~L~~~g~d 77 (229)
T TIGR00035 4 IGILGGMGPLATAELFRRINEKTKAKRDQ----EHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAV--KLENAGAD 77 (229)
T ss_pred EEEecCcCHHHHHHHHHHHHHHhHHhcCC----CCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHH--HHHHcCCC
Confidence 55669999865 2332222 222222 2467777764222 4433333333322 11122244
Q ss_pred ccEEEeCCHHHHHHHHHhhhc
Q 028413 168 SLWKICDSNSEALSYLAEFYD 188 (209)
Q Consensus 168 ~~i~~~~~~ee~~~~l~~~~~ 188 (209)
-.+.-|+|..-.++.+++.++
T Consensus 78 ~iviaCNTah~~~~~l~~~~~ 98 (229)
T TIGR00035 78 FIIMPCNTAHKFAEDIQKAIG 98 (229)
T ss_pred EEEECCccHHHHHHHHHHhCC
Confidence 456677998888888887543
No 138
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=22.05 E-value=1.3e+02 Score=26.58 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=34.6
Q ss_pred hHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHH
Q 028413 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFL 152 (209)
Q Consensus 81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l 152 (209)
-.+|-+-|.+.-... .. .||+++.-||.|+. ++..-+.|..+....+.+ |=++++ |+++-.+.
T Consensus 50 d~~Ra~dL~~a~a~~-dp-i~aI~~~rGGyg~~-rlLp~Ld~~~i~~~~k~~--PK~~iG----ySDiTaL~ 112 (305)
T PRK11253 50 DGERLADLNSLADLT-TP-NTIVLAVRGGYGAS-RLLAGIDWQGLAARQQDD--PLLIVG----HSDFTAIQ 112 (305)
T ss_pred HHHHHHHHHHHHhcC-CC-ccEEEEecccCCHh-HhhhhCCHHHHhhhhccC--CCEEEE----EcHHHHHH
Confidence 356777665431001 12 58999999999984 355555665554321112 434565 45554443
No 139
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=21.93 E-value=1e+02 Score=27.31 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCEEEccCC-ccHHHHHHHHHHhCCC----cEEEEe
Q 028413 11 SFELGGEIARLLDCTTWSGAG-PGLMDAVTKGAMQAGK----PVGGFK 53 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~-~GlM~ava~ga~~~gG----~viGi~ 53 (209)
-.+|+++|......+|++||+ -|+.-+...-|++.-| .++|..
T Consensus 4 ~~rl~r~l~~~~~gLvL~GGG~RG~ahiGvL~aLee~gi~~d~v~GtS 51 (306)
T cd07225 4 FSRLARVLTGNSIALVLGGGGARGCAHIGVIKALEEAGIPVDMVGGTS 51 (306)
T ss_pred HHHHHHHhcCCCEEEEECChHHHHHHHHHHHHHHHHcCCCCCEEEEEC
Confidence 367899999988888888876 5766666655555544 455553
No 140
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=21.84 E-value=1.5e+02 Score=25.57 Aligned_cols=11 Identities=73% Similarity=1.102 Sum_probs=10.3
Q ss_pred EEEEeCCCccc
Q 028413 102 AVVALPGGVGT 112 (209)
Q Consensus 102 a~I~lPGG~GT 112 (209)
|+|+|-||.||
T Consensus 2 a~viLaGG~Gt 12 (266)
T cd04180 2 AVVLLAGGLGT 12 (266)
T ss_pred EEEEECCCCcc
Confidence 78999999999
No 141
>PRK12361 hypothetical protein; Provisional
Probab=21.84 E-value=1.8e+02 Score=27.63 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEEEEecC
Q 028413 11 SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFKVG 55 (209)
Q Consensus 11 A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~~~ 55 (209)
|.++.+..++.+..+|+..||.|--..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGDGTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHhcC-CCCEEEecC
Confidence 56777776666555677777778777777788754 356899983
No 142
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=21.84 E-value=90 Score=28.70 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=24.7
Q ss_pred HHcCCCEEEccCCcc----HHHHHHHHHHhCCCcEE
Q 028413 19 ARLLDCTTWSGAGPG----LMDAVTKGAMQAGKPVG 50 (209)
Q Consensus 19 a~~g~~~V~~GG~~G----lM~ava~ga~~~gG~vi 50 (209)
|+.|-.-++||.+.| +||-+|.-|+.+||.++
T Consensus 189 akGGKIGLFGGAGVGKTVlImELINNiAKaHGGySV 224 (521)
T KOG1350|consen 189 AKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSV 224 (521)
T ss_pred ccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEE
Confidence 344444567777777 89999999999999776
No 143
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=21.77 E-value=98 Score=27.00 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHc-CC
Q 028413 82 SARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW-GT 160 (209)
Q Consensus 82 ~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~-gf 160 (209)
.+|-.-|.+.- ...+.|+++++-||.|+. ++..-+.|..+.. .|-++++ |+++-.++..+... |.
T Consensus 48 ~~Ra~dL~~a~---~d~~i~aI~~~rGGyg~~-rlL~~ld~~~i~~------~pK~~iG----ySDiTaL~~al~~~~g~ 113 (284)
T PF02016_consen 48 EERAEDLNEAF---ADPEIDAIWCARGGYGAN-RLLPYLDYDAIRK------NPKIFIG----YSDITALHNALYAKTGL 113 (284)
T ss_dssp HHHHHHHHHHH---HSTTEEEEEES--SS-GG-GGGGGCHHHHHHH------SG-EEEE-----GGGHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHh---cCCCCCEEEEeeccccHH-HHHhccccccccc------CCCEEEE----ecchHHHHHHHHHhCCC
Confidence 56766665542 123469999999999994 3555566666643 2546665 45555544444333 44
Q ss_pred C
Q 028413 161 V 161 (209)
Q Consensus 161 i 161 (209)
.
T Consensus 114 ~ 114 (284)
T PF02016_consen 114 V 114 (284)
T ss_dssp E
T ss_pred e
Confidence 3
No 144
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=21.77 E-value=90 Score=26.48 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=23.0
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchH
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKK 147 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~ 147 (209)
|++|.+-+..| +|++.+ .||+++++. .||+.
T Consensus 201 ~~VvtinStvG-----lEAll~----------gkpVi~~G~-~~Y~~ 231 (269)
T PF05159_consen 201 DAVVTINSTVG-----LEALLH----------GKPVIVFGR-AFYAG 231 (269)
T ss_pred CEEEEECCHHH-----HHHHHc----------CCceEEecC-cccCC
Confidence 99999998876 344433 689999984 57764
No 145
>PRK13054 lipid kinase; Reviewed
Probab=21.76 E-value=1.1e+02 Score=26.60 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEE
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVM 139 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiill 139 (209)
| .|+.-||=||+.|+...+...... .+.|+.++
T Consensus 58 d-~vvv~GGDGTl~evv~~l~~~~~~-----~~~~lgii 90 (300)
T PRK13054 58 A-TVIAGGGDGTINEVATALAQLEGD-----ARPALGIL 90 (300)
T ss_pred C-EEEEECCccHHHHHHHHHHhhccC-----CCCcEEEE
Confidence 5 466789999999998776421111 24578777
No 146
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=21.61 E-value=2.6e+02 Score=24.59 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=40.1
Q ss_pred hHHHHHHhHhhhhhcCCCCccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHc-C
Q 028413 81 FSARKHGLIDCAVRNDSCDRTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDW-G 159 (209)
Q Consensus 81 ~~~Rk~~m~~~~~~~~~~~sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~-g 159 (209)
-.+|-+-|.+.- ...+.||+++.-||.|+. ++..-+.+.++.. ++| ++++ |+++-.+.-.+... |
T Consensus 51 ~~~Ra~dL~~a~---~Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~----~PK--~fiG----ySDiTaL~~al~~~~g 116 (308)
T cd07062 51 PEERAEELMAAF---ADPSIKAIIPTIGGDDSN-ELLPYLDYELIKK----NPK--IFIG----YSDITALHLAIYKKTG 116 (308)
T ss_pred HHHHHHHHHHHh---cCCCCCEEEECCcccCHh-hhhhhcCHHHHhh----CCC--EEEe----ccHHHHHHHHHHHhcC
Confidence 356776665542 123359999999999984 4666677777643 245 5555 44544443333333 5
Q ss_pred CCC
Q 028413 160 TVA 162 (209)
Q Consensus 160 fi~ 162 (209)
+++
T Consensus 117 ~~t 119 (308)
T cd07062 117 LVT 119 (308)
T ss_pred CeE
Confidence 543
No 147
>PRK09291 short chain dehydrogenase; Provisional
Probab=21.31 E-value=1.4e+02 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=23.5
Q ss_pred CEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 24 CTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 24 ~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
.+++|||+.|+=.++++-..+.|-.|+.+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 467788888888888888888887777653
No 148
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=21.12 E-value=1.7e+02 Score=22.36 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=39.3
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCC-ccchHH------HHHHHhHHHcCCCChhcccccEEEe
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYD-SFYKKL------LDFLGDCEDWGTVAKDEVASLWKIC 173 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~-g~w~~l------~~~l~~~~~~gfi~~~~~~~~i~~~ 173 (209)
=++++.-.|.|.++=+.-+....+ .+.|++++... +..... .++. .+.. + .......+
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~-------~~~Pll~i~~~~~~~~~~~~~~q~~d~~-~~~~-----~--~~~~~~~i 124 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYL-------DSIPLLVITGQRPTAGEGRGAFQEIDQV-ALFR-----P--ITKWAYRV 124 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHh-------hCCCEEEEeCCCccccccCCcccccCHH-HHHH-----H--HhceEEEc
Confidence 467778878888776654444432 25799988431 111111 1111 1111 1 11223456
Q ss_pred CCHHHHHHHHHhhhc
Q 028413 174 DSNSEALSYLAEFYD 188 (209)
Q Consensus 174 ~~~ee~~~~l~~~~~ 188 (209)
++++++.+.+.+.+.
T Consensus 125 ~~~~~~~~~i~~A~~ 139 (155)
T cd07035 125 TSPEEIPEALRRAFR 139 (155)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877544
No 149
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=21.03 E-value=1e+02 Score=21.29 Aligned_cols=40 Identities=25% Similarity=0.475 Sum_probs=31.3
Q ss_pred chHHHHHHHhHHHcCCCChhcccccEEEeCCHHHHHHHHHhh
Q 028413 145 YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEALSYLAEF 186 (209)
Q Consensus 145 w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~~~l~~~ 186 (209)
|+.+...|+.+.+.|++... ...+.+++.-.++++.+.++
T Consensus 33 ~~~~~~yL~~L~~~gLI~~~--~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKKK--DGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEEE--TTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeCC--CCEEEECccHHHHHHHHHHH
Confidence 67788889999999999652 45677778889999888776
No 150
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.93 E-value=5.8e+02 Score=22.44 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=35.9
Q ss_pred cEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeCCccchHHHHHHHhHHHcCCCChhcccccEEEeCCHHHHH
Q 028413 101 TAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNYDSFYKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSEAL 180 (209)
Q Consensus 101 Da~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~~g~w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee~~ 180 (209)
|+|| --||.||+.|.. .. .+|++++-. +.|.. ...+.+.+.|.-.. ... -.-+++++.
T Consensus 306 d~~I-~hgG~~t~~eal---~~----------GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~--l~~---~~~~~~~l~ 363 (401)
T cd03784 306 AAVV-HHGGAGTTAAAL---RA----------GVPQLVVPF--FGDQP-FWAARVAELGAGPA--LDP---RELTAERLA 363 (401)
T ss_pred heee-ecCCchhHHHHH---Hc----------CCCEEeeCC--CCCcH-HHHHHHHHCCCCCC--CCc---ccCCHHHHH
Confidence 7776 677789988753 22 589999952 23322 22344555553211 100 012677777
Q ss_pred HHHHhhhc
Q 028413 181 SYLAEFYD 188 (209)
Q Consensus 181 ~~l~~~~~ 188 (209)
+.+++.+.
T Consensus 364 ~al~~~l~ 371 (401)
T cd03784 364 AALRRLLD 371 (401)
T ss_pred HHHHHHhC
Confidence 76766543
No 151
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=20.73 E-value=2.3e+02 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=27.4
Q ss_pred ccEEEEeCCCcccHHHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 100 RTAVVALPGGVGTLDEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
.|+||++=| .=||+|-+..+++. + . .+|||||-+.
T Consensus 78 ~dG~VVtHG-TDTme~TA~~Ls~~-l---~--~~kPVVlTGs 112 (336)
T TIGR00519 78 YDGFVITHG-TDTMAYTAAALSFM-L---E--TPKPVVFTGA 112 (336)
T ss_pred CCeEEEccC-CchHHHHHHHHHHH-c---C--CCCCEEEECC
Confidence 599999975 67999998888763 2 1 3799999874
No 152
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=20.70 E-value=74 Score=29.67 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=19.6
Q ss_pred CCEEEccCCccHHHHHHHHHHhCCCcEEE
Q 028413 23 DCTTWSGAGPGLMDAVTKGAMQAGKPVGG 51 (209)
Q Consensus 23 ~~~V~~GG~~GlM~ava~ga~~~gG~viG 51 (209)
..+|+|||-.|+|.|+.-+- +|.+|+=
T Consensus 5 dviIIGgGpAGlMaA~~aa~--~G~~V~l 31 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAK--AGRRVLL 31 (408)
T ss_pred eEEEECCCHHHHHHHHHHhh--cCCEEEE
Confidence 46788888899999887544 5655543
No 153
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=20.59 E-value=2.1e+02 Score=25.63 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=12.9
Q ss_pred ccEEEEeCCCcccHHHHHHHH
Q 028413 100 RTAVVALPGGVGTLDEMFEIL 120 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~ 120 (209)
+|++|+++|| +.-.+.-++
T Consensus 81 ~D~IIaiGGG--SviD~aK~i 99 (355)
T TIGR03405 81 CDLVIALGGG--SVIDTAKVL 99 (355)
T ss_pred CCEEEEeCCc--cHHHHHHHH
Confidence 4999999999 444444333
No 154
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=20.57 E-value=4.5e+02 Score=23.49 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=14.4
Q ss_pred ccEEEEeCCCcccHHHHHHHHHH
Q 028413 100 RTAVVALPGGVGTLDEMFEILAL 122 (209)
Q Consensus 100 sDa~I~lPGG~GTLeEl~e~~t~ 122 (209)
+|++|+++|| +.-.+.-+++.
T Consensus 78 ~D~IIavGGG--s~~D~aK~ia~ 98 (367)
T cd08182 78 PDAVLAVGGG--SVLDTAKALAA 98 (367)
T ss_pred cCEEEEeCCc--HHHHHHHHHHH
Confidence 5999999998 54455544443
No 155
>PLN02830 UDP-sugar pyrophosphorylase
Probab=20.54 E-value=2e+02 Score=28.29 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=11.2
Q ss_pred cEEEEeCCCccc
Q 028413 101 TAVVALPGGVGT 112 (209)
Q Consensus 101 Da~I~lPGG~GT 112 (209)
=|||.|-||.||
T Consensus 129 vavllLaGGlGT 140 (615)
T PLN02830 129 AAFVLVAGGLGE 140 (615)
T ss_pred EEEEEecCCccc
Confidence 589999999999
No 156
>PRK06443 chorismate mutase; Validated
Probab=20.48 E-value=1.6e+02 Score=24.31 Aligned_cols=40 Identities=23% Similarity=0.153 Sum_probs=30.1
Q ss_pred HHHH-HHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHhCCCcEE
Q 028413 7 HYLQ-SFELGGEIARLLDCTTWSGAGPGLMDAVTKGAMQAGKPVG 50 (209)
Q Consensus 7 ~y~~-A~~LG~~La~~g~~~V~~GG~~GlM~ava~ga~~~gG~vi 50 (209)
.|.. |+.||..+...|+.++.+- .-...-.|+..+||+++
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i~~----~~~~~~~~~~~~~~~~~ 131 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYIED----NPDSIEEGCSKAGGHVV 131 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEecc----CchHHHHhhhhcCCeEe
Confidence 4776 8999999999988666664 44455567888899764
No 157
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.35 E-value=1.5e+02 Score=24.49 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.3
Q ss_pred CCCEEEccCCccHHHHHHHHHHhCCCcEEEE
Q 028413 22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGF 52 (209)
Q Consensus 22 g~~~V~~GG~~GlM~ava~ga~~~gG~viGi 52 (209)
+-.+++|||..|+=.++++-..+.|-.|+.+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 4567889999999999999999988888765
No 158
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=20.34 E-value=2.9e+02 Score=21.71 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=17.9
Q ss_pred cEEEEeCCCcccH-----HHHHHHHHHHHhhhhcCCCCccEEEEeC
Q 028413 101 TAVVALPGGVGTL-----DEMFEILALIQLERIGSELPVPFLVMNY 141 (209)
Q Consensus 101 Da~I~lPGG~GTL-----eEl~e~~t~~ql~~~~~~~~kPiilln~ 141 (209)
|+ |++|||.++. .++...+. +... +.|||+-+..
T Consensus 78 D~-liv~GG~~~~~~~~~~~~~~~l~--~~~~----~~k~i~~ic~ 116 (180)
T cd03169 78 DA-LVIPGGRAPEYLRLDEKVLAIVR--HFAE----ANKPVAAICH 116 (180)
T ss_pred CE-EEEcCCCChhhhccCHHHHHHHH--HHHH----cCCEEEEECc
Confidence 65 5667777753 22322222 2222 3689887753
No 159
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=20.33 E-value=92 Score=30.12 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhhhhcCCCCccEEEE-eCCcc------------chHHHHHHHhHHHcCCCChhcccccEEEeCCHHH
Q 028413 112 TLDEMFEILALIQLERIGSELPVPFLVM-NYDSF------------YKKLLDFLGDCEDWGTVAKDEVASLWKICDSNSE 178 (209)
Q Consensus 112 TLeEl~e~~t~~ql~~~~~~~~kPiill-n~~g~------------w~~l~~~l~~~~~~gfi~~~~~~~~i~~~~~~ee 178 (209)
|.+|+...+-| + -+|+|++ |.+|| |+.+..|=-..+-+.|-.+ +. +.-..+.+.++
T Consensus 444 TvQEiStmiR~------g---l~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg~~-~~-~~~~~~~~~~~ 512 (557)
T COG3961 444 TVQEISTMIRW------G---LKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTALPEAFGAK-NG-EAKFRATTGEE 512 (557)
T ss_pred hHHHHHHHHHc------C---CCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhhhhhcCCC-Cc-eEEEeecChHH
Confidence 67788776655 2 4787655 76665 3343333111122233233 22 22245677777
Q ss_pred HHHHHHhh
Q 028413 179 ALSYLAEF 186 (209)
Q Consensus 179 ~~~~l~~~ 186 (209)
+-..++.-
T Consensus 513 l~~~~~~~ 520 (557)
T COG3961 513 LALALDVA 520 (557)
T ss_pred HHHHHHHH
Confidence 66666553
No 160
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=20.20 E-value=1.2e+02 Score=26.75 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=15.3
Q ss_pred EEEeCCCcccHHHHHHHHHH
Q 028413 103 VVALPGGVGTLDEMFEILAL 122 (209)
Q Consensus 103 ~I~lPGG~GTLeEl~e~~t~ 122 (209)
.|+..||=||++|+...+.-
T Consensus 61 ~via~GGDGTv~evingl~~ 80 (301)
T COG1597 61 TVIAAGGDGTVNEVANGLAG 80 (301)
T ss_pred EEEEecCcchHHHHHHHHhc
Confidence 45567899999999877643
No 161
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.15 E-value=1.6e+02 Score=24.35 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=27.1
Q ss_pred CCCEEEccCCccHHHHHHHHHHhCCCcEEEEe
Q 028413 22 LDCTTWSGAGPGLMDAVTKGAMQAGKPVGGFK 53 (209)
Q Consensus 22 g~~~V~~GG~~GlM~ava~ga~~~gG~viGi~ 53 (209)
+...+++||..|+=.++++-..+.|..|+.+.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICG 39 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 35688899999999999999999998887664
No 162
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=20.14 E-value=2.7e+02 Score=25.98 Aligned_cols=12 Identities=58% Similarity=0.988 Sum_probs=11.3
Q ss_pred cEEEEeCCCccc
Q 028413 101 TAVVALPGGVGT 112 (209)
Q Consensus 101 Da~I~lPGG~GT 112 (209)
=|+|.|-||.||
T Consensus 57 vavl~LaGGlGT 68 (420)
T PF01704_consen 57 VAVLKLAGGLGT 68 (420)
T ss_dssp EEEEEEEESBSG
T ss_pred EEEEEEcCcccC
Confidence 699999999999
No 163
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.00 E-value=2.7e+02 Score=23.79 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHHcCCCEEEccCCccHHHHHHHHHHhCCC-cEEEEecC
Q 028413 17 EIARLLDCTTWSGAGPGLMDAVTKGAMQAGK-PVGGFKVG 55 (209)
Q Consensus 17 ~La~~g~~~V~~GG~~GlM~ava~ga~~~gG-~viGi~~~ 55 (209)
..++.+.-+|+.-|+-|-.-.+.++...... ..+|++|.
T Consensus 52 ~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 52 EARKFGVDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred HHHhcCCCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3344444577788889999999998877443 47898873
Done!